Query 018882
Match_columns 349
No_of_seqs 701 out of 1382
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 04:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.3E-59 7.2E-64 420.8 42.8 336 2-338 447-784 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.6E-58 1.2E-62 412.9 42.5 336 2-338 380-749 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.8E-52 1.2E-56 370.7 34.7 318 2-332 133-486 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.2E-52 9.1E-57 371.6 32.7 323 2-339 168-525 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 8.1E-51 1.8E-55 371.5 34.0 217 2-227 232-448 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 7.4E-50 1.6E-54 365.2 35.9 324 2-334 263-651 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-24 3.2E-29 202.5 39.2 320 4-335 579-898 (899)
8 PRK11788 tetratricopeptide rep 99.9 2.6E-24 5.5E-29 181.5 32.4 295 34-336 42-346 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2E-23 4.4E-28 194.9 40.1 324 4-337 443-799 (899)
10 PRK11788 tetratricopeptide rep 99.9 3.4E-23 7.3E-28 174.7 36.6 309 3-324 46-363 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.9E-21 4.1E-26 172.0 39.2 328 3-341 53-385 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 6.7E-20 1.5E-24 162.6 40.0 329 3-340 138-574 (615)
13 PRK15174 Vi polysaccharide exp 99.9 1.7E-19 3.8E-24 159.7 38.3 292 3-303 87-382 (656)
14 PRK11447 cellulose synthase su 99.9 2.5E-18 5.5E-23 162.3 39.4 328 3-337 280-700 (1157)
15 PRK11447 cellulose synthase su 99.9 6.5E-18 1.4E-22 159.5 39.2 321 3-336 362-739 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-17 4.6E-22 146.8 37.6 304 29-340 129-499 (615)
17 KOG4626 O-linked N-acetylgluco 99.9 1.1E-18 2.4E-23 143.5 24.4 326 3-340 127-488 (966)
18 PRK10049 pgaA outer membrane p 99.8 8.5E-17 1.8E-21 145.6 38.3 327 3-338 60-457 (765)
19 PRK10049 pgaA outer membrane p 99.8 1.9E-16 4.2E-21 143.3 38.5 330 3-340 26-425 (765)
20 KOG4626 O-linked N-acetylgluco 99.8 3.8E-18 8.2E-23 140.5 24.3 310 4-325 196-507 (966)
21 PRK14574 hmsH outer membrane p 99.8 3.7E-15 8.1E-20 133.1 38.9 168 2-178 44-213 (822)
22 PRK09782 bacteriophage N4 rece 99.8 6E-15 1.3E-19 134.5 37.9 267 62-340 476-743 (987)
23 PRK14574 hmsH outer membrane p 99.8 8.5E-15 1.9E-19 130.9 36.9 328 4-338 114-514 (822)
24 PRK10747 putative protoheme IX 99.8 8.4E-15 1.8E-19 122.8 33.8 287 39-339 96-392 (398)
25 KOG4422 Uncharacterized conser 99.8 7.4E-15 1.6E-19 116.2 30.9 309 24-337 204-590 (625)
26 PRK09782 bacteriophage N4 rece 99.8 3.6E-14 7.7E-19 129.5 39.5 325 5-340 355-709 (987)
27 PRK10747 putative protoheme IX 99.8 8.2E-15 1.8E-19 122.9 33.0 283 5-301 97-389 (398)
28 PF13429 TPR_15: Tetratricopep 99.8 5.8E-18 1.3E-22 135.7 12.4 263 32-301 13-276 (280)
29 TIGR00540 hemY_coli hemY prote 99.8 1.1E-14 2.4E-19 122.8 32.5 291 37-336 94-398 (409)
30 PF13429 TPR_15: Tetratricopep 99.8 8.6E-18 1.9E-22 134.7 12.6 262 68-336 13-276 (280)
31 TIGR00540 hemY_coli hemY prote 99.8 2.1E-14 4.6E-19 121.1 32.9 291 4-301 96-398 (409)
32 KOG4422 Uncharacterized conser 99.8 1.3E-14 2.8E-19 114.8 29.0 315 4-322 127-482 (625)
33 COG2956 Predicted N-acetylgluc 99.8 4.5E-14 9.9E-19 107.7 30.0 294 39-340 47-347 (389)
34 KOG2076 RNA polymerase III tra 99.7 1.9E-13 4.2E-18 117.6 33.6 324 5-335 152-510 (895)
35 COG3071 HemY Uncharacterized e 99.7 3E-13 6.5E-18 106.3 31.9 293 40-343 97-396 (400)
36 COG2956 Predicted N-acetylgluc 99.7 2.4E-13 5.1E-18 103.9 28.9 291 5-302 48-347 (389)
37 KOG1126 DNA-binding cell divis 99.7 1.5E-14 3.2E-19 120.5 24.5 289 42-343 334-626 (638)
38 COG3071 HemY Uncharacterized e 99.7 6.9E-13 1.5E-17 104.3 32.3 293 4-307 96-395 (400)
39 KOG1126 DNA-binding cell divis 99.7 1.3E-14 2.9E-19 120.7 23.1 291 7-307 334-625 (638)
40 KOG1155 Anaphase-promoting com 99.7 9.5E-13 2.1E-17 105.4 29.0 256 37-301 237-494 (559)
41 KOG1155 Anaphase-promoting com 99.7 1E-12 2.2E-17 105.2 29.1 259 71-337 235-495 (559)
42 KOG2076 RNA polymerase III tra 99.6 3.6E-12 7.8E-17 110.0 31.5 303 35-342 147-483 (895)
43 KOG2003 TPR repeat-containing 99.6 4.4E-12 9.6E-17 101.7 28.3 312 2-322 286-708 (840)
44 KOG2002 TPR-containing nuclear 99.6 3.3E-12 7.1E-17 111.1 28.5 330 2-337 317-709 (1018)
45 PRK12370 invasion protein regu 99.6 3.1E-12 6.7E-17 112.1 27.6 249 44-303 278-536 (553)
46 KOG0495 HAT repeat protein [RN 99.6 4.3E-11 9.2E-16 100.2 31.7 326 4-339 528-882 (913)
47 PF12569 NARP1: NMDA receptor- 99.6 3E-11 6.5E-16 102.7 31.4 289 2-301 14-333 (517)
48 KOG1915 Cell cycle control pro 99.6 1.1E-10 2.4E-15 94.2 32.4 324 5-338 154-537 (677)
49 TIGR02521 type_IV_pilW type IV 99.6 8E-12 1.7E-16 97.8 25.5 201 133-337 31-232 (234)
50 KOG0547 Translocase of outer m 99.6 5.4E-11 1.2E-15 96.2 29.5 328 2-340 125-569 (606)
51 PRK12370 invasion protein regu 99.6 1.6E-11 3.4E-16 107.7 29.0 267 60-336 253-534 (553)
52 KOG4318 Bicoid mRNA stability 99.6 7.6E-13 1.6E-17 113.8 19.6 252 13-288 11-286 (1088)
53 TIGR02521 type_IV_pilW type IV 99.6 1.2E-11 2.6E-16 96.8 25.2 200 63-266 31-231 (234)
54 KOG1129 TPR repeat-containing 99.6 6.6E-13 1.4E-17 101.8 16.9 237 60-302 220-458 (478)
55 KOG1129 TPR repeat-containing 99.6 1.2E-12 2.5E-17 100.5 18.0 240 95-340 220-461 (478)
56 PF12569 NARP1: NMDA receptor- 99.5 1.4E-10 3E-15 98.8 31.8 296 33-338 10-335 (517)
57 KOG1840 Kinesin light chain [C 99.5 8.5E-12 1.8E-16 104.8 24.1 252 97-348 198-490 (508)
58 KOG2002 TPR-containing nuclear 99.5 4.7E-10 1E-14 98.1 33.6 242 97-341 269-529 (1018)
59 KOG1173 Anaphase-promoting com 99.5 1.1E-10 2.3E-15 96.1 28.1 288 25-321 242-535 (611)
60 KOG0495 HAT repeat protein [RN 99.5 6.2E-10 1.4E-14 93.4 31.6 327 4-339 491-848 (913)
61 KOG2003 TPR repeat-containing 99.5 1.2E-10 2.7E-15 93.6 26.1 278 2-288 429-709 (840)
62 PF13041 PPR_2: PPR repeat fam 99.5 2.2E-13 4.8E-18 77.5 6.5 50 271-320 1-50 (50)
63 PF13041 PPR_2: PPR repeat fam 99.5 2.9E-13 6.2E-18 77.1 6.6 50 61-110 1-50 (50)
64 KOG1915 Cell cycle control pro 99.4 4.6E-09 9.9E-14 85.1 31.1 322 5-339 86-468 (677)
65 KOG0547 Translocase of outer m 99.4 1.5E-09 3.3E-14 88.1 26.1 303 29-340 117-494 (606)
66 COG3063 PilF Tfp pilus assembl 99.4 1.4E-09 3E-14 79.8 22.7 200 136-339 38-238 (250)
67 KOG1840 Kinesin light chain [C 99.4 5.5E-10 1.2E-14 94.1 23.6 238 63-300 199-477 (508)
68 PRK11189 lipoprotein NlpI; Pro 99.4 2.3E-09 5.1E-14 86.4 26.1 222 39-269 38-267 (296)
69 KOG1173 Anaphase-promoting com 99.4 2.1E-09 4.6E-14 88.7 25.7 272 4-284 256-533 (611)
70 PRK11189 lipoprotein NlpI; Pro 99.3 6.3E-09 1.4E-13 83.9 27.0 227 77-313 40-275 (296)
71 KOG1174 Anaphase-promoting com 99.3 1.2E-08 2.6E-13 81.4 27.2 291 40-339 209-502 (564)
72 cd05804 StaR_like StaR_like; a 99.3 7.6E-08 1.6E-12 80.5 34.2 308 27-338 6-337 (355)
73 COG3063 PilF Tfp pilus assembl 99.3 7.1E-09 1.5E-13 76.2 23.5 198 101-302 38-236 (250)
74 KOG4162 Predicted calmodulin-b 99.3 5.3E-08 1.1E-12 83.6 31.8 333 4-341 335-787 (799)
75 KOG1174 Anaphase-promoting com 99.3 2.2E-08 4.8E-13 79.9 27.6 271 23-303 228-501 (564)
76 cd05804 StaR_like StaR_like; a 99.3 7.7E-08 1.7E-12 80.4 30.8 291 5-302 19-336 (355)
77 KOG1156 N-terminal acetyltrans 99.3 3E-07 6.4E-12 77.7 33.2 192 2-198 51-249 (700)
78 KOG3785 Uncharacterized conser 99.3 1.9E-08 4.2E-13 78.7 23.6 98 243-344 398-497 (557)
79 PF04733 Coatomer_E: Coatomer 99.2 5.4E-09 1.2E-13 83.1 21.0 251 35-302 9-265 (290)
80 PF04733 Coatomer_E: Coatomer 99.2 1.3E-09 2.8E-14 86.6 17.2 253 71-339 9-267 (290)
81 KOG4318 Bicoid mRNA stability 99.2 8.9E-10 1.9E-14 95.5 16.8 259 49-330 12-293 (1088)
82 KOG2376 Signal recognition par 99.2 1E-06 2.2E-11 73.8 31.1 50 2-52 22-71 (652)
83 KOG1156 N-terminal acetyltrans 99.2 1.3E-06 2.7E-11 74.0 31.2 327 5-341 20-438 (700)
84 KOG4340 Uncharacterized conser 99.1 1.6E-07 3.4E-12 72.0 23.1 281 6-299 24-336 (459)
85 PRK04841 transcriptional regul 99.1 9.6E-07 2.1E-11 83.3 33.8 334 5-338 387-761 (903)
86 KOG1125 TPR repeat-containing 99.1 3.6E-08 7.7E-13 81.9 20.8 253 35-295 293-564 (579)
87 KOG2047 mRNA splicing factor [ 99.1 2.6E-06 5.7E-11 72.2 31.4 199 135-335 389-613 (835)
88 KOG4340 Uncharacterized conser 99.1 8.1E-08 1.8E-12 73.5 20.5 294 28-332 11-334 (459)
89 KOG1128 Uncharacterized conser 99.1 7.4E-08 1.6E-12 82.3 21.8 225 100-345 400-624 (777)
90 PLN02789 farnesyltranstransfer 99.1 7.5E-07 1.6E-11 72.0 25.6 215 65-285 39-267 (320)
91 KOG0548 Molecular co-chaperone 99.0 4.6E-06 1E-10 69.2 28.8 328 3-340 13-458 (539)
92 KOG1070 rRNA processing protei 99.0 6.5E-07 1.4E-11 82.0 25.7 205 27-235 1458-1666(1710)
93 KOG1125 TPR repeat-containing 99.0 1.8E-07 4E-12 77.8 20.7 254 71-330 293-564 (579)
94 KOG2047 mRNA splicing factor [ 99.0 9.4E-06 2E-10 69.0 31.0 152 4-162 114-277 (835)
95 KOG1070 rRNA processing protei 99.0 1.4E-06 2.9E-11 80.0 26.8 249 86-339 1447-1702(1710)
96 PLN02789 farnesyltranstransfer 99.0 2.4E-06 5.2E-11 69.1 26.0 215 29-250 39-267 (320)
97 KOG0624 dsRNA-activated protei 99.0 6.1E-06 1.3E-10 64.8 28.4 305 26-340 37-373 (504)
98 KOG4162 Predicted calmodulin-b 99.0 1.9E-06 4.2E-11 74.4 26.2 285 9-302 461-783 (799)
99 KOG3785 Uncharacterized conser 98.9 4.1E-06 8.9E-11 66.0 23.9 292 7-311 166-497 (557)
100 KOG1128 Uncharacterized conser 98.9 3.2E-07 6.9E-12 78.6 18.6 220 25-266 396-615 (777)
101 KOG1914 mRNA cleavage and poly 98.9 2.4E-05 5.1E-10 65.3 31.4 132 203-336 366-500 (656)
102 PF12854 PPR_1: PPR repeat 98.9 3.2E-09 7E-14 54.2 3.8 32 268-299 2-33 (34)
103 TIGR03302 OM_YfiO outer membra 98.9 9.8E-07 2.1E-11 69.1 19.7 186 26-232 32-232 (235)
104 KOG2376 Signal recognition par 98.9 3.4E-05 7.3E-10 65.1 30.9 287 34-330 86-513 (652)
105 PRK10370 formate-dependent nit 98.9 2.1E-06 4.5E-11 64.7 20.0 120 111-233 52-174 (198)
106 PRK04841 transcriptional regul 98.9 2.3E-05 4.9E-10 74.2 31.7 299 4-303 421-761 (903)
107 COG5010 TadD Flp pilus assembl 98.9 2.4E-06 5.2E-11 64.5 19.8 119 139-260 106-224 (257)
108 PF12854 PPR_1: PPR repeat 98.9 5E-09 1.1E-13 53.5 4.0 32 163-194 2-33 (34)
109 COG5010 TadD Flp pilus assembl 98.8 2.4E-06 5.1E-11 64.5 19.4 160 137-300 70-229 (257)
110 KOG0624 dsRNA-activated protei 98.8 2.4E-05 5.1E-10 61.6 28.0 288 4-303 50-371 (504)
111 PRK10370 formate-dependent nit 98.8 4.4E-07 9.6E-12 68.3 15.7 132 40-177 52-186 (198)
112 TIGR03302 OM_YfiO outer membra 98.8 2.3E-06 5.1E-11 67.0 19.9 186 131-337 31-232 (235)
113 PRK14720 transcript cleavage f 98.8 1.2E-05 2.6E-10 72.8 26.2 148 26-197 30-178 (906)
114 PRK15179 Vi polysaccharide bio 98.8 2.4E-05 5.3E-10 70.0 26.4 146 130-279 83-228 (694)
115 KOG0548 Molecular co-chaperone 98.8 4.1E-05 9E-10 63.8 25.4 297 35-340 10-424 (539)
116 KOG3081 Vesicle coat complex C 98.7 3.6E-05 7.9E-10 58.4 23.9 250 35-302 16-271 (299)
117 KOG3081 Vesicle coat complex C 98.7 2.7E-05 5.9E-10 59.1 22.2 251 71-338 16-272 (299)
118 PRK15359 type III secretion sy 98.7 1.5E-06 3.2E-11 61.9 15.2 109 12-127 13-121 (144)
119 KOG0985 Vesicle coat protein c 98.7 6.4E-05 1.4E-09 67.5 27.1 289 13-333 968-1304(1666)
120 KOG0985 Vesicle coat protein c 98.7 6.2E-05 1.3E-09 67.6 26.8 157 41-228 1089-1245(1666)
121 KOG3617 WD40 and TPR repeat-co 98.7 5.8E-05 1.3E-09 66.3 26.1 302 2-339 738-1111(1416)
122 KOG3060 Uncharacterized conser 98.7 4.9E-05 1.1E-09 57.3 22.0 188 77-268 26-221 (289)
123 PRK15359 type III secretion sy 98.7 3.3E-06 7.1E-11 60.2 15.6 59 135-194 60-118 (144)
124 PRK14720 transcript cleavage f 98.7 8.6E-06 1.9E-10 73.7 21.2 251 60-339 28-285 (906)
125 PRK15179 Vi polysaccharide bio 98.7 1.9E-05 4.2E-10 70.6 23.0 148 164-315 82-229 (694)
126 KOG3060 Uncharacterized conser 98.6 6.8E-05 1.5E-09 56.6 21.2 190 40-233 25-221 (289)
127 COG4783 Putative Zn-dependent 98.6 9.8E-05 2.1E-09 61.0 24.0 182 114-302 253-437 (484)
128 TIGR02552 LcrH_SycD type III s 98.6 4.4E-06 9.5E-11 59.1 13.5 99 26-127 16-114 (135)
129 COG4783 Putative Zn-dependent 98.6 0.00016 3.5E-09 59.8 23.4 119 143-264 316-434 (484)
130 TIGR02552 LcrH_SycD type III s 98.6 7.7E-06 1.7E-10 57.8 14.3 96 205-302 19-114 (135)
131 KOG1127 TPR repeat-containing 98.5 5E-05 1.1E-09 68.0 20.9 82 256-340 801-882 (1238)
132 KOG3617 WD40 and TPR repeat-co 98.5 4.2E-05 9.1E-10 67.2 19.8 240 26-300 725-994 (1416)
133 KOG2053 Mitochondrial inherita 98.4 0.001 2.2E-08 59.3 30.1 222 4-233 21-256 (932)
134 PF09976 TPR_21: Tetratricopep 98.4 4.2E-05 9.1E-10 54.7 15.8 116 181-298 24-143 (145)
135 TIGR00756 PPR pentatricopeptid 98.4 4.9E-07 1.1E-11 46.9 4.3 33 275-307 2-34 (35)
136 KOG2053 Mitochondrial inherita 98.4 0.0011 2.5E-08 59.0 29.1 225 37-269 19-257 (932)
137 KOG3616 Selective LIM binding 98.4 0.00011 2.5E-09 63.9 19.9 107 143-262 742-848 (1636)
138 PF13812 PPR_3: Pentatricopept 98.4 5.8E-07 1.3E-11 46.2 4.1 33 274-306 2-34 (34)
139 PF10037 MRP-S27: Mitochondria 98.4 9E-06 2E-10 67.6 13.0 119 202-320 65-185 (429)
140 PF09976 TPR_21: Tetratricopep 98.4 4.3E-05 9.3E-10 54.7 15.0 127 203-333 12-143 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.7E-05 5.8E-10 64.5 15.2 127 98-230 169-295 (395)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.1E-05 6.7E-10 64.2 15.4 124 136-265 172-295 (395)
143 KOG3616 Selective LIM binding 98.4 0.0002 4.4E-09 62.4 20.1 137 175-333 739-875 (1636)
144 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.8E-11 45.2 4.2 33 65-97 2-34 (35)
145 PF13812 PPR_3: Pentatricopept 98.3 1.5E-06 3.2E-11 44.6 4.1 32 65-96 3-34 (34)
146 KOG1127 TPR repeat-containing 98.3 0.00045 9.8E-09 62.2 21.3 216 113-334 473-697 (1238)
147 PF10037 MRP-S27: Mitochondria 98.3 3E-05 6.6E-10 64.6 13.0 124 93-216 61-186 (429)
148 PF08579 RPM2: Mitochondrial r 98.2 2.3E-05 5.1E-10 51.2 9.4 74 70-143 32-114 (120)
149 PF08579 RPM2: Mitochondrial r 98.2 3.3E-05 7.2E-10 50.5 9.5 76 245-320 32-116 (120)
150 PF05843 Suf: Suppressor of fo 98.1 0.00017 3.7E-09 57.7 14.3 129 100-231 3-135 (280)
151 cd00189 TPR Tetratricopeptide 98.1 8.4E-05 1.8E-09 48.5 10.7 94 30-126 3-96 (100)
152 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00014 3E-09 50.0 12.1 99 29-127 4-105 (119)
153 PF12895 Apc3: Anaphase-promot 98.1 8.9E-06 1.9E-10 52.0 5.5 81 5-88 2-83 (84)
154 PF05843 Suf: Suppressor of fo 98.1 0.00035 7.5E-09 56.0 15.3 129 135-266 3-135 (280)
155 PF01535 PPR: PPR repeat; Int 98.1 7.1E-06 1.5E-10 41.0 3.5 30 275-304 2-31 (31)
156 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00043 9.3E-09 47.5 13.6 20 175-194 46-65 (119)
157 cd00189 TPR Tetratricopeptide 98.0 0.00017 3.7E-09 47.0 11.1 24 276-299 71-94 (100)
158 PF06239 ECSIT: Evolutionarily 98.0 0.0002 4.3E-09 53.1 11.6 103 201-322 45-152 (228)
159 PRK15363 pathogenicity island 98.0 0.00033 7.2E-09 49.5 12.2 98 203-302 35-132 (157)
160 KOG1914 mRNA cleavage and poly 98.0 0.0066 1.4E-07 51.4 31.8 159 169-329 367-531 (656)
161 PRK02603 photosystem I assembl 98.0 0.00076 1.7E-08 49.8 14.9 87 169-256 36-124 (172)
162 PLN03088 SGT1, suppressor of 98.0 0.00017 3.6E-09 60.0 12.5 86 4-92 14-99 (356)
163 PLN03088 SGT1, suppressor of 98.0 0.00036 7.8E-09 58.0 14.4 87 178-266 12-98 (356)
164 PRK15363 pathogenicity island 98.0 0.00041 8.9E-09 49.0 12.3 98 168-267 35-132 (157)
165 PRK10866 outer membrane biogen 98.0 0.0046 9.9E-08 48.4 20.2 177 139-335 38-239 (243)
166 PF12895 Apc3: Anaphase-promot 98.0 4E-05 8.7E-10 48.9 6.6 20 174-193 31-50 (84)
167 PRK02603 photosystem I assembl 98.0 0.001 2.3E-08 49.1 14.8 61 66-126 38-100 (172)
168 PF14938 SNAP: Soluble NSF att 97.9 0.0015 3.2E-08 52.6 16.5 129 135-265 116-261 (282)
169 PF01535 PPR: PPR repeat; Int 97.9 1.5E-05 3.3E-10 39.7 3.4 26 206-231 3-28 (31)
170 PF14559 TPR_19: Tetratricopep 97.9 2.5E-05 5.5E-10 47.6 4.9 62 4-69 3-64 (68)
171 COG4235 Cytochrome c biogenesi 97.9 0.0016 3.5E-08 50.9 15.3 121 191-316 145-268 (287)
172 PF06239 ECSIT: Evolutionarily 97.9 0.00026 5.5E-09 52.6 10.4 115 47-183 34-153 (228)
173 CHL00033 ycf3 photosystem I as 97.9 0.0005 1.1E-08 50.6 11.9 62 170-231 37-100 (168)
174 KOG0550 Molecular chaperone (D 97.9 0.0073 1.6E-07 49.4 18.8 52 215-266 261-315 (486)
175 CHL00033 ycf3 photosystem I as 97.9 0.00064 1.4E-08 50.1 12.4 60 66-125 38-99 (168)
176 PRK10866 outer membrane biogen 97.9 0.0076 1.6E-07 47.2 20.1 58 69-127 38-98 (243)
177 PF14938 SNAP: Soluble NSF att 97.9 0.006 1.3E-07 49.2 18.6 148 139-301 100-265 (282)
178 PRK10153 DNA-binding transcrip 97.8 0.0026 5.7E-08 55.5 17.4 142 164-310 333-488 (517)
179 KOG0553 TPR repeat-containing 97.8 0.00054 1.2E-08 53.3 11.4 98 176-277 89-186 (304)
180 PF13414 TPR_11: TPR repeat; P 97.8 0.00022 4.7E-09 43.5 7.1 65 273-338 3-68 (69)
181 PRK10153 DNA-binding transcrip 97.7 0.0029 6.3E-08 55.2 16.0 140 198-340 332-485 (517)
182 KOG2041 WD40 repeat protein [G 97.7 0.027 5.8E-07 49.5 23.3 241 64-331 797-1080(1189)
183 KOG0553 TPR repeat-containing 97.7 0.0012 2.5E-08 51.5 11.9 151 141-301 89-244 (304)
184 PF12688 TPR_5: Tetratrico pep 97.7 0.0064 1.4E-07 41.4 14.1 88 212-299 10-101 (120)
185 PF14559 TPR_19: Tetratricopep 97.7 0.00013 2.7E-09 44.4 5.4 52 39-92 3-54 (68)
186 PF13432 TPR_16: Tetratricopep 97.6 0.00049 1.1E-08 41.3 7.3 56 246-302 5-60 (65)
187 KOG0550 Molecular chaperone (D 97.6 0.014 3E-07 47.9 17.0 259 71-340 57-353 (486)
188 PF13432 TPR_16: Tetratricopep 97.6 0.0004 8.8E-09 41.7 6.5 61 279-340 3-63 (65)
189 PF04840 Vps16_C: Vps16, C-ter 97.6 0.028 6.1E-07 45.8 26.1 106 205-330 179-284 (319)
190 COG4700 Uncharacterized protei 97.6 0.014 3.1E-07 42.3 18.3 128 95-224 86-214 (251)
191 KOG2796 Uncharacterized conser 97.6 0.02 4.4E-07 44.0 16.5 140 170-312 179-323 (366)
192 PF12688 TPR_5: Tetratrico pep 97.6 0.01 2.2E-07 40.4 14.0 56 176-231 9-66 (120)
193 KOG1130 Predicted G-alpha GTPa 97.6 0.0018 3.9E-08 52.8 11.2 263 2-265 27-342 (639)
194 KOG2796 Uncharacterized conser 97.5 0.013 2.7E-07 45.1 14.7 178 4-198 134-316 (366)
195 COG4235 Cytochrome c biogenesi 97.5 0.0077 1.7E-07 47.3 13.9 101 60-162 153-256 (287)
196 PF13414 TPR_11: TPR repeat; P 97.5 0.0005 1.1E-08 41.9 5.9 63 27-91 3-66 (69)
197 PF13525 YfiO: Outer membrane 97.5 0.027 5.9E-07 42.8 17.7 22 210-231 148-169 (203)
198 PF13525 YfiO: Outer membrane 97.5 0.028 6E-07 42.8 19.2 180 140-328 12-198 (203)
199 PF12921 ATP13: Mitochondrial 97.4 0.01 2.2E-07 40.9 11.8 98 203-320 2-100 (126)
200 PRK10803 tol-pal system protei 97.3 0.0048 1E-07 48.7 11.2 97 64-162 144-246 (263)
201 KOG1130 Predicted G-alpha GTPa 97.3 0.0073 1.6E-07 49.4 11.8 133 205-337 197-344 (639)
202 PF03704 BTAD: Bacterial trans 97.3 0.0016 3.5E-08 46.6 7.7 72 64-136 63-139 (146)
203 PF03704 BTAD: Bacterial trans 97.3 0.0022 4.9E-08 45.9 8.3 71 240-311 64-139 (146)
204 PF13371 TPR_9: Tetratricopept 97.3 0.00076 1.6E-08 41.6 5.1 53 3-56 6-58 (73)
205 PRK10803 tol-pal system protei 97.3 0.0081 1.8E-07 47.4 11.8 97 204-302 144-246 (263)
206 PRK15331 chaperone protein Sic 97.3 0.018 3.9E-07 41.2 12.0 90 211-302 45-134 (165)
207 PF13424 TPR_12: Tetratricopep 97.2 0.0016 3.5E-08 40.7 6.4 66 274-339 6-77 (78)
208 KOG1538 Uncharacterized conser 97.2 0.077 1.7E-06 46.4 17.6 252 27-302 556-846 (1081)
209 COG4700 Uncharacterized protei 97.2 0.049 1.1E-06 39.7 17.9 126 165-294 86-214 (251)
210 PF12921 ATP13: Mitochondrial 97.1 0.013 2.9E-07 40.3 10.3 28 26-53 1-28 (126)
211 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.13 2.9E-06 43.0 28.8 130 204-336 398-530 (660)
212 PF13281 DUF4071: Domain of un 97.1 0.13 2.7E-06 42.7 19.5 31 202-232 304-334 (374)
213 PF13371 TPR_9: Tetratricopept 97.1 0.0049 1.1E-07 37.9 7.3 56 35-92 3-58 (73)
214 PF04840 Vps16_C: Vps16, C-ter 97.0 0.13 2.9E-06 42.0 24.7 124 169-318 178-301 (319)
215 PRK15331 chaperone protein Sic 97.0 0.073 1.6E-06 38.2 14.0 92 174-267 43-134 (165)
216 COG1729 Uncharacterized protei 96.9 0.015 3.3E-07 45.1 10.0 99 28-127 143-244 (262)
217 PF13424 TPR_12: Tetratricopep 96.9 0.0028 6.1E-08 39.7 5.2 63 28-90 6-73 (78)
218 PF09205 DUF1955: Domain of un 96.9 0.069 1.5E-06 36.5 11.4 68 97-165 85-152 (161)
219 PF10300 DUF3808: Protein of u 96.8 0.21 4.5E-06 43.5 17.1 178 45-230 175-374 (468)
220 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.076 1.6E-06 44.7 13.0 65 25-92 73-141 (453)
221 KOG2280 Vacuolar assembly/sort 96.7 0.43 9.3E-06 42.7 21.6 110 202-330 683-792 (829)
222 PF10300 DUF3808: Protein of u 96.7 0.38 8.2E-06 41.9 17.7 181 153-340 177-379 (468)
223 PF13281 DUF4071: Domain of un 96.5 0.37 8E-06 40.0 21.0 164 137-302 145-334 (374)
224 KOG0543 FKBP-type peptidyl-pro 96.5 0.096 2.1E-06 43.1 12.0 125 176-302 216-355 (397)
225 KOG2041 WD40 repeat protein [G 96.5 0.57 1.2E-05 41.8 22.0 187 24-228 689-903 (1189)
226 KOG2280 Vacuolar assembly/sort 96.5 0.6 1.3E-05 41.9 21.2 114 166-298 682-795 (829)
227 PF04053 Coatomer_WDAD: Coatom 96.5 0.077 1.7E-06 45.5 12.0 157 37-228 271-427 (443)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.057 1.2E-06 45.4 10.8 97 202-304 74-176 (453)
229 KOG2610 Uncharacterized conser 96.5 0.14 3.1E-06 41.1 12.3 154 37-193 113-272 (491)
230 KOG1538 Uncharacterized conser 96.4 0.27 5.8E-06 43.2 14.8 256 60-335 553-844 (1081)
231 KOG3941 Intermediate in Toll s 96.4 0.053 1.2E-06 42.3 9.6 103 202-323 66-173 (406)
232 KOG4555 TPR repeat-containing 96.4 0.11 2.4E-06 35.5 9.7 90 36-127 52-144 (175)
233 KOG0543 FKBP-type peptidyl-pro 96.3 0.085 1.8E-06 43.4 10.7 121 2-126 218-354 (397)
234 KOG2114 Vacuolar assembly/sort 96.2 0.49 1.1E-05 43.0 15.4 179 66-265 337-517 (933)
235 COG4649 Uncharacterized protei 96.1 0.32 7E-06 35.2 12.8 123 39-161 70-195 (221)
236 PF09205 DUF1955: Domain of un 96.0 0.28 6E-06 33.7 14.6 141 143-305 12-152 (161)
237 PF13374 TPR_10: Tetratricopep 96.0 0.019 4.1E-07 30.5 4.2 40 309-348 3-42 (42)
238 PF08631 SPO22: Meiosis protei 95.9 0.68 1.5E-05 37.3 25.2 63 99-162 85-150 (278)
239 KOG1941 Acetylcholine receptor 95.9 0.69 1.5E-05 37.8 13.8 226 4-229 18-272 (518)
240 KOG2610 Uncharacterized conser 95.9 0.56 1.2E-05 37.9 13.2 152 4-159 115-273 (491)
241 COG3898 Uncharacterized membra 95.9 0.79 1.7E-05 37.9 30.0 249 39-302 132-392 (531)
242 PF04053 Coatomer_WDAD: Coatom 95.9 0.35 7.5E-06 41.6 13.1 97 179-296 329-425 (443)
243 KOG3941 Intermediate in Toll s 95.8 0.13 2.9E-06 40.2 9.3 52 60-111 64-120 (406)
244 KOG1585 Protein required for f 95.8 0.63 1.4E-05 35.8 15.4 19 280-298 197-215 (308)
245 PF13428 TPR_14: Tetratricopep 95.7 0.041 8.9E-07 29.8 4.7 28 29-56 3-30 (44)
246 PF13428 TPR_14: Tetratricopep 95.7 0.059 1.3E-06 29.1 5.3 28 275-302 3-30 (44)
247 COG3629 DnrI DNA-binding trans 95.6 0.2 4.4E-06 39.7 9.9 78 64-142 154-236 (280)
248 PF07079 DUF1347: Protein of u 95.6 1.2 2.6E-05 37.7 25.6 42 138-179 133-178 (549)
249 COG3629 DnrI DNA-binding trans 95.6 0.24 5.2E-06 39.3 10.0 62 203-265 153-214 (280)
250 COG3118 Thioredoxin domain-con 95.5 0.97 2.1E-05 35.9 16.3 145 72-220 143-289 (304)
251 KOG2114 Vacuolar assembly/sort 95.4 0.33 7.1E-06 44.0 11.4 177 100-299 336-516 (933)
252 PF07035 Mic1: Colon cancer-as 95.4 0.68 1.5E-05 33.7 16.0 131 191-336 17-148 (167)
253 PF13512 TPR_18: Tetratricopep 95.4 0.61 1.3E-05 32.8 11.4 52 180-231 22-75 (142)
254 COG1729 Uncharacterized protei 95.2 0.94 2E-05 35.5 12.1 86 77-162 155-244 (262)
255 KOG4570 Uncharacterized conser 95.2 0.2 4.3E-06 39.9 8.4 105 22-128 59-165 (418)
256 COG5107 RNA14 Pre-mRNA 3'-end 95.2 1.7 3.7E-05 36.8 21.3 145 99-248 398-545 (660)
257 smart00299 CLH Clathrin heavy 95.1 0.75 1.6E-05 32.5 15.7 42 139-181 13-54 (140)
258 smart00299 CLH Clathrin heavy 95.1 0.77 1.7E-05 32.5 15.5 127 171-320 10-137 (140)
259 KOG4555 TPR repeat-containing 95.0 0.73 1.6E-05 31.7 10.8 91 177-268 52-145 (175)
260 PRK11906 transcriptional regul 95.0 2 4.4E-05 36.7 14.8 79 81-161 322-400 (458)
261 PF10602 RPN7: 26S proteasome 94.9 0.48 1E-05 35.1 9.6 97 28-125 37-140 (177)
262 PF10602 RPN7: 26S proteasome 94.9 0.51 1.1E-05 35.0 9.7 62 100-161 38-101 (177)
263 COG4105 ComL DNA uptake lipopr 94.9 1.4 3E-05 34.3 20.5 70 144-213 45-116 (254)
264 COG0457 NrfG FOG: TPR repeat [ 94.9 1.3 2.8E-05 34.0 28.5 224 76-302 36-265 (291)
265 PF08631 SPO22: Meiosis protei 94.9 1.6 3.6E-05 35.1 24.9 163 169-334 85-272 (278)
266 KOG1920 IkappaB kinase complex 94.9 3.8 8.3E-05 39.2 21.1 135 139-299 914-1052(1265)
267 PF13929 mRNA_stabil: mRNA sta 94.9 1.6 3.4E-05 34.8 16.2 63 130-192 199-262 (292)
268 COG4105 ComL DNA uptake lipopr 94.8 1.5 3.2E-05 34.2 19.1 57 210-266 174-232 (254)
269 COG3118 Thioredoxin domain-con 94.7 1.7 3.8E-05 34.6 18.4 146 176-325 142-289 (304)
270 PF13176 TPR_7: Tetratricopept 94.6 0.11 2.3E-06 26.6 4.1 28 311-338 2-29 (36)
271 PF04184 ST7: ST7 protein; In 94.3 3.2 6.8E-05 35.8 16.3 64 239-302 260-324 (539)
272 KOG1550 Extracellular protein 94.2 4 8.6E-05 36.7 22.8 244 43-303 228-505 (552)
273 PF13176 TPR_7: Tetratricopept 94.2 0.15 3.2E-06 26.1 4.0 26 275-300 1-26 (36)
274 PF13170 DUF4003: Protein of u 94.2 2.6 5.6E-05 34.3 21.7 130 150-282 79-226 (297)
275 KOG1941 Acetylcholine receptor 94.1 2.8 6.1E-05 34.5 13.8 229 37-266 16-274 (518)
276 PRK11906 transcriptional regul 94.1 3.4 7.3E-05 35.4 17.1 146 149-297 274-431 (458)
277 PF07079 DUF1347: Protein of u 93.9 3.6 7.7E-05 35.0 32.1 80 254-335 437-522 (549)
278 PF13512 TPR_18: Tetratricopep 93.9 1.5 3.3E-05 30.8 11.5 19 142-160 56-74 (142)
279 KOG4570 Uncharacterized conser 93.9 0.84 1.8E-05 36.6 9.1 103 163-267 59-164 (418)
280 COG3898 Uncharacterized membra 93.8 3.4 7.3E-05 34.5 29.9 290 29-334 84-389 (531)
281 PF13431 TPR_17: Tetratricopep 93.8 0.082 1.8E-06 26.7 2.5 24 24-47 10-33 (34)
282 PF09613 HrpB1_HrpK: Bacterial 93.8 1.8 3.9E-05 31.1 12.2 52 39-92 22-73 (160)
283 PF07035 Mic1: Colon cancer-as 93.7 2 4.3E-05 31.3 15.6 132 13-159 15-146 (167)
284 COG4649 Uncharacterized protei 93.7 2 4.3E-05 31.3 13.9 140 61-201 57-200 (221)
285 COG0457 NrfG FOG: TPR repeat [ 93.6 2.6 5.6E-05 32.3 28.6 227 40-268 36-266 (291)
286 KOG1464 COP9 signalosome, subu 93.5 3 6.5E-05 32.8 15.3 49 112-160 41-92 (440)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 93.5 0.89 1.9E-05 29.3 7.1 44 257-300 26-69 (103)
288 PF02259 FAT: FAT domain; Int 93.4 4.1 8.8E-05 34.1 20.8 66 201-266 144-212 (352)
289 KOG1585 Protein required for f 93.4 3 6.4E-05 32.4 17.9 90 171-261 153-250 (308)
290 PF09613 HrpB1_HrpK: Bacterial 93.3 2.2 4.8E-05 30.7 12.7 50 180-231 22-72 (160)
291 PF13170 DUF4003: Protein of u 93.2 3.9 8.6E-05 33.2 21.6 130 80-211 79-225 (297)
292 PF00515 TPR_1: Tetratricopept 93.0 0.3 6.5E-06 24.4 3.9 28 275-302 3-30 (34)
293 COG4785 NlpI Lipoprotein NlpI, 92.9 3.2 7E-05 31.6 14.7 186 37-234 75-268 (297)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 92.8 1.4 3.1E-05 28.4 7.3 44 152-195 26-69 (103)
295 PF02284 COX5A: Cytochrome c o 92.7 1.2 2.6E-05 29.0 6.9 30 129-158 41-70 (108)
296 PF11207 DUF2989: Protein of u 92.7 2.7 5.9E-05 31.5 9.7 79 73-153 117-198 (203)
297 PF02284 COX5A: Cytochrome c o 92.7 1.9 4.1E-05 28.2 9.3 47 256-302 28-74 (108)
298 PF04184 ST7: ST7 protein; In 92.6 6.4 0.00014 34.1 20.2 58 173-230 264-322 (539)
299 KOG1550 Extracellular protein 92.3 8.2 0.00018 34.8 22.5 151 3-163 260-427 (552)
300 PF00515 TPR_1: Tetratricopept 92.2 0.27 5.9E-06 24.5 3.2 28 29-56 3-30 (34)
301 PF13431 TPR_17: Tetratricopep 92.1 0.29 6.4E-06 24.6 3.1 21 202-222 12-32 (34)
302 PF07719 TPR_2: Tetratricopept 92.1 0.58 1.3E-05 23.2 4.4 28 275-302 3-30 (34)
303 KOG1920 IkappaB kinase complex 92.1 12 0.00026 36.1 22.4 87 206-302 942-1028(1265)
304 PF04097 Nic96: Nup93/Nic96; 92.0 9.5 0.00021 34.9 19.3 89 244-334 420-531 (613)
305 PF07719 TPR_2: Tetratricopept 91.9 0.49 1.1E-05 23.5 3.9 32 309-340 2-33 (34)
306 KOG1258 mRNA processing protei 91.8 8.8 0.00019 34.0 32.8 88 4-92 91-180 (577)
307 TIGR02561 HrpB1_HrpK type III 91.4 3.9 8.4E-05 29.0 11.2 51 40-92 23-73 (153)
308 PF13374 TPR_10: Tetratricopep 91.0 0.77 1.7E-05 24.0 4.3 29 274-302 3-31 (42)
309 PF11207 DUF2989: Protein of u 90.8 3.8 8.3E-05 30.8 8.8 72 220-292 123-197 (203)
310 KOG4234 TPR repeat-containing 90.5 4.4 9.4E-05 30.4 8.7 90 211-302 103-197 (271)
311 PRK15180 Vi polysaccharide bio 90.4 11 0.00024 32.6 13.8 95 137-233 327-421 (831)
312 PF13181 TPR_8: Tetratricopept 90.4 0.93 2E-05 22.4 4.1 30 310-339 3-32 (34)
313 TIGR02561 HrpB1_HrpK type III 90.3 5 0.00011 28.5 10.7 51 5-57 23-74 (153)
314 PRK11619 lytic murein transgly 90.2 15 0.00032 33.8 28.6 252 67-335 103-373 (644)
315 PRK15180 Vi polysaccharide bio 90.0 12 0.00026 32.3 12.4 90 36-128 332-421 (831)
316 COG3947 Response regulator con 89.7 9.2 0.0002 30.7 16.7 58 136-194 282-339 (361)
317 PF02259 FAT: FAT domain; Int 89.6 11 0.00024 31.5 23.3 67 166-232 144-213 (352)
318 PF00637 Clathrin: Region in C 89.5 0.23 4.9E-06 35.3 1.7 87 208-301 12-98 (143)
319 COG2976 Uncharacterized protei 89.1 7.8 0.00017 29.0 13.5 55 246-302 134-188 (207)
320 KOG0276 Vesicle coat complex C 89.0 5.7 0.00012 35.2 9.6 97 110-227 649-745 (794)
321 COG4455 ImpE Protein of avirul 88.9 4.4 9.4E-05 30.9 7.8 76 30-107 4-81 (273)
322 TIGR03504 FimV_Cterm FimV C-te 88.7 1.3 2.9E-05 23.9 3.9 24 279-302 5-28 (44)
323 PF07163 Pex26: Pex26 protein; 88.6 9.1 0.0002 30.5 9.7 87 105-191 90-181 (309)
324 PF00637 Clathrin: Region in C 88.6 0.2 4.4E-06 35.6 0.9 82 140-228 14-95 (143)
325 COG2976 Uncharacterized protei 88.5 8.7 0.00019 28.8 15.2 93 244-338 95-189 (207)
326 PF13174 TPR_6: Tetratricopept 87.9 0.42 9.2E-06 23.5 1.6 24 33-56 6-29 (33)
327 PF04097 Nic96: Nup93/Nic96; 87.6 23 0.00049 32.6 19.4 89 174-267 264-356 (613)
328 PF13174 TPR_6: Tetratricopept 87.6 1.3 2.9E-05 21.5 3.4 24 279-302 6-29 (33)
329 PRK09687 putative lyase; Provi 87.5 14 0.0003 29.9 27.8 235 60-319 34-278 (280)
330 PF13181 TPR_8: Tetratricopept 87.4 2.2 4.9E-05 21.0 4.3 29 274-302 2-30 (34)
331 COG4455 ImpE Protein of avirul 87.2 7.1 0.00015 29.8 8.0 52 70-122 8-59 (273)
332 PF07721 TPR_4: Tetratricopept 87.1 1.1 2.5E-05 20.7 2.7 18 279-296 7-24 (26)
333 PF13929 mRNA_stabil: mRNA sta 87.0 14 0.00031 29.6 20.1 85 234-318 198-288 (292)
334 KOG0276 Vesicle coat complex C 85.9 18 0.00039 32.4 10.8 101 178-299 647-747 (794)
335 KOG0890 Protein kinase of the 85.8 52 0.0011 35.0 24.2 144 5-157 1396-1542(2382)
336 KOG4077 Cytochrome c oxidase, 84.4 11 0.00023 26.0 7.1 41 261-301 72-112 (149)
337 TIGR03504 FimV_Cterm FimV C-te 84.1 3.1 6.7E-05 22.5 3.8 13 145-157 11-23 (44)
338 KOG1258 mRNA processing protei 83.8 32 0.00069 30.7 25.8 122 202-328 296-420 (577)
339 KOG4648 Uncharacterized conser 83.2 2.6 5.5E-05 34.4 4.6 95 211-309 105-199 (536)
340 PF13762 MNE1: Mitochondrial s 83.2 14 0.00031 26.2 9.2 49 97-145 78-127 (145)
341 PF13934 ELYS: Nuclear pore co 82.6 21 0.00045 27.8 9.6 103 30-144 79-183 (226)
342 PF06552 TOM20_plant: Plant sp 82.6 17 0.00038 26.9 8.8 13 305-317 110-122 (186)
343 COG1747 Uncharacterized N-term 82.5 34 0.00073 30.1 24.6 165 132-303 65-235 (711)
344 KOG4077 Cytochrome c oxidase, 82.3 13 0.00028 25.6 6.8 32 128-159 79-110 (149)
345 PF07163 Pex26: Pex26 protein; 82.2 24 0.00052 28.3 10.0 91 136-226 86-181 (309)
346 KOG4648 Uncharacterized conser 81.7 14 0.00031 30.4 8.1 92 175-268 104-195 (536)
347 PF10579 Rapsyn_N: Rapsyn N-te 81.7 10 0.00022 23.6 6.4 46 285-330 18-65 (80)
348 KOG0687 26S proteasome regulat 81.5 28 0.00061 28.6 11.6 112 204-317 105-225 (393)
349 smart00028 TPR Tetratricopepti 81.1 3.1 6.7E-05 19.4 3.2 27 29-55 3-29 (34)
350 PF09477 Type_III_YscG: Bacter 81.0 14 0.0003 24.6 8.9 87 41-136 20-106 (116)
351 cd00280 TRFH Telomeric Repeat 80.8 16 0.00035 27.1 7.4 20 72-91 120-139 (200)
352 PF06552 TOM20_plant: Plant sp 80.4 21 0.00046 26.4 8.0 95 8-108 7-123 (186)
353 PF14689 SPOB_a: Sensor_kinase 80.1 5.9 0.00013 23.3 4.4 29 307-335 22-50 (62)
354 PF11846 DUF3366: Domain of un 79.0 15 0.00033 27.7 7.5 53 250-302 120-173 (193)
355 PF12862 Apc5: Anaphase-promot 78.9 8.2 0.00018 25.0 5.2 52 4-55 10-69 (94)
356 TIGR02508 type_III_yscG type I 78.7 16 0.00034 24.0 8.1 53 70-128 46-98 (115)
357 COG3947 Response regulator con 78.6 34 0.00073 27.7 17.3 69 275-344 281-349 (361)
358 cd00280 TRFH Telomeric Repeat 78.5 25 0.00054 26.2 7.8 41 280-323 118-158 (200)
359 PF11846 DUF3366: Domain of un 77.7 12 0.00027 28.2 6.6 33 95-127 141-173 (193)
360 PF11848 DUF3368: Domain of un 77.5 9.8 0.00021 21.0 5.0 33 284-316 13-45 (48)
361 PF10345 Cohesin_load: Cohesin 77.1 61 0.0013 29.9 30.3 184 9-194 38-251 (608)
362 KOG2471 TPR repeat-containing 76.9 51 0.0011 28.9 13.8 108 212-321 249-382 (696)
363 PF10579 Rapsyn_N: Rapsyn N-te 76.2 11 0.00024 23.4 4.8 46 250-295 18-65 (80)
364 TIGR02508 type_III_yscG type I 76.1 19 0.00042 23.6 9.0 86 7-103 20-107 (115)
365 cd08819 CARD_MDA5_2 Caspase ac 76.0 17 0.00038 23.1 6.5 64 258-327 22-85 (88)
366 COG0735 Fur Fe2+/Zn2+ uptake r 75.9 24 0.00052 25.2 7.2 61 192-253 10-70 (145)
367 PF11848 DUF3368: Domain of un 75.8 11 0.00024 20.7 5.0 34 73-106 12-45 (48)
368 PRK10564 maltose regulon perip 75.5 10 0.00022 30.7 5.6 44 59-102 252-296 (303)
369 PF14689 SPOB_a: Sensor_kinase 75.3 7.9 0.00017 22.8 3.9 26 29-54 25-50 (62)
370 KOG4507 Uncharacterized conser 75.1 25 0.00054 31.5 8.2 90 213-303 617-706 (886)
371 COG4785 NlpI Lipoprotein NlpI, 75.0 36 0.00078 26.2 15.4 181 77-269 79-268 (297)
372 PF13762 MNE1: Mitochondrial s 74.5 28 0.00061 24.8 11.2 81 171-251 42-128 (145)
373 KOG3677 RNA polymerase I-assoc 74.3 55 0.0012 28.0 10.0 60 66-125 238-299 (525)
374 KOG2297 Predicted translation 73.8 48 0.001 27.1 20.4 17 275-291 323-339 (412)
375 PRK10564 maltose regulon perip 72.8 12 0.00026 30.3 5.4 37 275-311 259-295 (303)
376 PHA02875 ankyrin repeat protei 72.2 64 0.0014 27.8 14.5 211 36-273 8-230 (413)
377 PF08424 NRDE-2: NRDE-2, neces 72.1 56 0.0012 27.1 17.0 98 165-264 16-128 (321)
378 KOG2063 Vacuolar assembly/sort 71.1 1E+02 0.0022 29.7 17.5 187 135-321 506-745 (877)
379 PF07575 Nucleopor_Nup85: Nup8 70.9 73 0.0016 29.1 10.7 31 286-316 508-538 (566)
380 COG0735 Fur Fe2+/Zn2+ uptake r 69.8 35 0.00076 24.4 6.9 50 225-275 8-57 (145)
381 PRK10941 hypothetical protein; 69.8 35 0.00075 27.5 7.5 79 29-109 183-262 (269)
382 COG5108 RPO41 Mitochondrial DN 69.7 56 0.0012 29.9 9.2 91 32-125 33-130 (1117)
383 COG5159 RPN6 26S proteasome re 69.6 58 0.0013 26.3 11.8 34 277-310 129-166 (421)
384 PF11817 Foie-gras_1: Foie gra 68.8 33 0.00071 27.2 7.3 79 44-125 162-245 (247)
385 KOG0687 26S proteasome regulat 68.7 66 0.0014 26.6 12.1 143 50-196 57-209 (393)
386 KOG3807 Predicted membrane pro 68.4 17 0.00038 29.7 5.5 105 8-128 232-341 (556)
387 PF11663 Toxin_YhaV: Toxin wit 68.2 6.7 0.00015 27.2 2.8 31 145-177 107-137 (140)
388 COG2909 MalT ATP-dependent tra 67.8 1.2E+02 0.0025 29.0 27.7 224 109-332 426-683 (894)
389 COG5187 RPN7 26S proteasome re 67.7 65 0.0014 26.1 13.5 28 62-89 114-141 (412)
390 COG5108 RPO41 Mitochondrial DN 66.9 75 0.0016 29.2 9.4 75 208-285 33-115 (1117)
391 KOG4507 Uncharacterized conser 66.8 57 0.0012 29.4 8.5 58 139-197 648-705 (886)
392 PF11817 Foie-gras_1: Foie gra 66.8 44 0.00095 26.5 7.6 62 99-160 179-245 (247)
393 KOG1308 Hsp70-interacting prot 65.5 5.6 0.00012 32.6 2.4 117 37-159 124-241 (377)
394 PF11838 ERAP1_C: ERAP1-like C 63.9 83 0.0018 26.0 13.5 87 39-128 142-231 (324)
395 KOG4234 TPR repeat-containing 63.4 65 0.0014 24.6 12.4 94 175-269 102-199 (271)
396 smart00386 HAT HAT (Half-A-TPR 62.6 16 0.00034 17.3 4.1 29 6-35 1-29 (33)
397 PRK09687 putative lyase; Provi 62.2 84 0.0018 25.5 28.2 234 25-284 35-278 (280)
398 PRK11639 zinc uptake transcrip 62.0 56 0.0012 24.1 6.9 62 229-291 17-78 (169)
399 cd07153 Fur_like Ferric uptake 61.6 28 0.00061 23.5 5.1 47 244-290 6-52 (116)
400 KOG0686 COP9 signalosome, subu 61.5 1E+02 0.0023 26.4 14.2 160 99-266 151-332 (466)
401 PF07064 RIC1: RIC1; InterPro 61.4 83 0.0018 25.2 16.9 44 29-75 84-127 (258)
402 KOG1308 Hsp70-interacting prot 61.4 16 0.00034 30.1 4.1 93 215-309 126-218 (377)
403 PF08311 Mad3_BUB1_I: Mad3/BUB 61.3 52 0.0011 22.8 7.8 43 81-123 81-124 (126)
404 cd08819 CARD_MDA5_2 Caspase ac 60.8 41 0.00089 21.5 6.9 14 182-195 50-63 (88)
405 PF09477 Type_III_YscG: Bacter 60.6 48 0.001 22.2 9.8 79 78-163 21-99 (116)
406 COG2909 MalT ATP-dependent tra 60.5 1.6E+02 0.0035 28.2 24.6 199 143-341 425-651 (894)
407 KOG0991 Replication factor C, 60.3 82 0.0018 24.8 13.0 101 178-282 169-281 (333)
408 KOG0376 Serine-threonine phosp 60.3 33 0.00071 29.8 6.0 101 3-109 15-116 (476)
409 PRK11619 lytic murein transgly 60.2 1.5E+02 0.0032 27.7 25.6 229 60-300 126-373 (644)
410 PF09454 Vps23_core: Vps23 cor 59.6 35 0.00077 20.3 4.5 50 271-321 6-55 (65)
411 smart00804 TAP_C C-terminal do 59.0 8.7 0.00019 22.7 1.8 24 40-63 38-61 (63)
412 PF01475 FUR: Ferric uptake re 58.7 26 0.00057 23.9 4.5 46 278-323 12-57 (120)
413 KOG1464 COP9 signalosome, subu 57.9 98 0.0021 24.9 24.8 81 7-87 42-129 (440)
414 KOG2066 Vacuolar assembly/sort 56.7 1.8E+02 0.0038 27.5 13.4 26 241-266 508-533 (846)
415 PF07575 Nucleopor_Nup85: Nup8 56.7 1.6E+02 0.0035 27.0 18.1 63 236-300 403-465 (566)
416 PF09454 Vps23_core: Vps23 cor 56.6 28 0.00062 20.7 3.7 23 69-91 14-36 (65)
417 PF00244 14-3-3: 14-3-3 protei 55.8 1E+02 0.0022 24.3 10.5 40 69-108 7-46 (236)
418 KOG2063 Vacuolar assembly/sort 55.5 2E+02 0.0044 27.8 16.7 26 66-91 507-532 (877)
419 PRK10941 hypothetical protein; 55.1 1.1E+02 0.0024 24.7 10.3 77 241-318 184-261 (269)
420 PF09670 Cas_Cas02710: CRISPR- 54.9 1.4E+02 0.003 25.7 10.6 56 106-162 139-198 (379)
421 PF12926 MOZART2: Mitotic-spin 54.8 53 0.0012 20.9 6.3 43 48-91 29-71 (88)
422 cd07153 Fur_like Ferric uptake 54.8 46 0.00099 22.4 5.2 47 209-255 6-52 (116)
423 KOG0686 COP9 signalosome, subu 54.6 1.4E+02 0.003 25.7 14.3 160 64-231 151-332 (466)
424 PF08424 NRDE-2: NRDE-2, neces 54.5 1.3E+02 0.0027 25.1 17.6 26 174-199 160-185 (321)
425 COG1747 Uncharacterized N-term 53.8 1.6E+02 0.0036 26.2 25.0 166 61-233 64-235 (711)
426 PF03943 TAP_C: TAP C-terminal 53.8 10 0.00022 21.3 1.5 24 40-63 26-49 (51)
427 PRK11639 zinc uptake transcrip 53.5 89 0.0019 23.0 7.5 60 195-255 18-77 (169)
428 KOG2297 Predicted translation 53.5 1.3E+02 0.0027 24.8 15.2 32 24-55 162-195 (412)
429 PF14561 TPR_20: Tetratricopep 53.2 59 0.0013 20.9 9.1 55 24-78 19-73 (90)
430 PRK09462 fur ferric uptake reg 52.9 82 0.0018 22.5 7.3 63 227-290 6-69 (148)
431 PF10345 Cohesin_load: Cohesin 52.6 1.9E+02 0.0042 26.7 31.5 196 25-230 28-252 (608)
432 PHA02875 ankyrin repeat protei 52.1 1.6E+02 0.0034 25.5 15.6 199 13-238 16-230 (413)
433 PF02184 HAT: HAT (Half-A-TPR) 52.1 28 0.00061 17.3 2.7 24 7-32 2-25 (32)
434 KOG2034 Vacuolar sorting prote 51.5 2.3E+02 0.005 27.2 23.2 132 140-290 511-645 (911)
435 KOG4567 GTPase-activating prot 51.2 1.4E+02 0.003 24.6 8.3 72 47-124 263-344 (370)
436 PRK13342 recombination factor 50.5 1.7E+02 0.0037 25.4 19.9 32 252-283 244-275 (413)
437 PF11663 Toxin_YhaV: Toxin wit 50.2 22 0.00048 24.8 2.9 28 217-246 109-136 (140)
438 PF01475 FUR: Ferric uptake re 49.7 43 0.00093 22.8 4.4 46 67-112 11-56 (120)
439 PF04762 IKI3: IKI3 family; I 49.6 2.7E+02 0.0058 27.5 13.2 127 33-162 700-843 (928)
440 KOG4567 GTPase-activating prot 49.3 1.5E+02 0.0032 24.4 9.2 70 223-297 263-342 (370)
441 KOG0376 Serine-threonine phosp 49.2 62 0.0014 28.2 5.9 102 176-282 12-114 (476)
442 PF10475 DUF2450: Protein of u 48.2 1.5E+02 0.0033 24.2 9.3 110 139-259 104-218 (291)
443 PRK09462 fur ferric uptake reg 48.1 1E+02 0.0022 22.1 7.5 60 194-254 8-68 (148)
444 PF07064 RIC1: RIC1; InterPro 47.8 1.5E+02 0.0031 23.9 15.3 66 279-344 185-256 (258)
445 COG5187 RPN7 26S proteasome re 47.8 1.5E+02 0.0033 24.1 13.9 26 203-228 115-140 (412)
446 PF04090 RNA_pol_I_TF: RNA pol 47.5 1.2E+02 0.0027 23.1 6.6 30 28-57 42-71 (199)
447 PF02847 MA3: MA3 domain; Int 47.2 84 0.0018 21.0 7.3 21 174-194 8-28 (113)
448 PF12926 MOZART2: Mitotic-spin 47.2 74 0.0016 20.3 7.9 42 154-195 29-70 (88)
449 COG0790 FOG: TPR repeat, SEL1 46.7 1.6E+02 0.0034 23.9 21.9 84 39-129 53-144 (292)
450 KOG3364 Membrane protein invol 46.6 1E+02 0.0022 21.8 10.0 68 235-302 29-100 (149)
451 PF11123 DNA_Packaging_2: DNA 46.5 67 0.0015 19.6 4.7 32 8-40 13-44 (82)
452 PRK12798 chemotaxis protein; R 46.1 2E+02 0.0043 24.9 21.5 152 111-267 125-286 (421)
453 PF12862 Apc5: Anaphase-promot 46.0 80 0.0017 20.4 7.0 54 249-302 9-70 (94)
454 KOG2066 Vacuolar assembly/sort 45.6 2.7E+02 0.0059 26.4 25.7 18 306-323 688-705 (846)
455 PF14853 Fis1_TPR_C: Fis1 C-te 45.5 57 0.0012 18.5 6.1 29 279-309 7-35 (53)
456 PF09670 Cas_Cas02710: CRISPR- 45.2 2E+02 0.0043 24.7 12.0 53 143-196 141-197 (379)
457 KOG4521 Nuclear pore complex, 44.3 3.5E+02 0.0075 27.2 14.5 55 101-155 986-1043(1480)
458 KOG2396 HAT (Half-A-TPR) repea 44.0 2.4E+02 0.0051 25.2 22.8 239 84-337 303-559 (568)
459 PF10366 Vps39_1: Vacuolar sor 44.0 98 0.0021 20.8 8.1 27 275-301 41-67 (108)
460 PF09986 DUF2225: Uncharacteri 43.8 1.5E+02 0.0033 22.9 12.5 49 80-128 142-195 (214)
461 KOG4642 Chaperone-dependent E3 43.5 1.6E+02 0.0036 23.3 11.0 118 178-299 20-143 (284)
462 KOG0292 Vesicle coat complex C 43.1 2.5E+02 0.0055 27.1 8.9 140 178-348 653-792 (1202)
463 KOG2396 HAT (Half-A-TPR) repea 42.6 2.5E+02 0.0054 25.1 31.4 195 130-335 312-523 (568)
464 COG4976 Predicted methyltransf 42.4 95 0.0021 24.3 5.4 55 2-57 5-59 (287)
465 PF10475 DUF2450: Protein of u 42.3 1.9E+02 0.0041 23.7 9.7 24 201-224 195-218 (291)
466 COG4259 Uncharacterized protei 42.3 99 0.0022 20.4 6.4 19 72-90 81-99 (121)
467 KOG1586 Protein required for f 41.3 1.8E+02 0.0039 23.0 17.7 58 64-121 55-116 (288)
468 PF03745 DUF309: Domain of unk 41.2 75 0.0016 18.7 5.6 46 284-329 10-60 (62)
469 PF07678 A2M_comp: A-macroglob 41.1 1.8E+02 0.0039 23.0 10.5 30 167-196 131-160 (246)
470 PRK09857 putative transposase; 40.6 2E+02 0.0044 23.5 9.2 66 241-307 209-274 (292)
471 KOG2659 LisH motif-containing 40.3 1.8E+02 0.0039 22.7 9.4 119 37-158 3-128 (228)
472 PF05664 DUF810: Protein of un 39.7 2.1E+02 0.0046 26.8 8.2 33 233-265 212-248 (677)
473 PF02847 MA3: MA3 domain; Int 39.6 1.1E+02 0.0025 20.3 7.6 18 71-88 10-27 (113)
474 PRK09857 putative transposase; 39.1 2.2E+02 0.0047 23.4 9.5 24 246-269 248-271 (292)
475 PF10366 Vps39_1: Vacuolar sor 39.1 1.2E+02 0.0026 20.4 7.9 27 100-126 41-67 (108)
476 KOG0989 Replication factor C, 38.9 2.3E+02 0.0049 23.6 9.1 22 144-165 266-287 (346)
477 PF04090 RNA_pol_I_TF: RNA pol 38.4 1.8E+02 0.0039 22.2 8.8 31 203-233 41-71 (199)
478 COG0790 FOG: TPR repeat, SEL1 38.3 2.1E+02 0.0047 23.1 23.8 151 4-164 53-222 (292)
479 KOG0508 Ankyrin repeat protein 38.2 1.3E+02 0.0028 26.4 6.1 106 35-152 89-199 (615)
480 COG2812 DnaX DNA polymerase II 37.4 3.1E+02 0.0068 24.7 9.8 85 44-133 181-280 (515)
481 cd08326 CARD_CASP9 Caspase act 37.0 89 0.0019 19.8 4.0 63 11-82 18-80 (84)
482 KOG2168 Cullins [Cell cycle co 36.6 3.9E+02 0.0086 25.7 13.7 313 2-334 335-661 (835)
483 KOG1839 Uncharacterized protei 36.5 4.8E+02 0.01 26.6 13.0 134 202-335 972-1126(1236)
484 KOG4642 Chaperone-dependent E3 36.2 2.2E+02 0.0048 22.6 11.2 116 38-158 21-142 (284)
485 COG0819 TenA Putative transcri 36.2 2.1E+02 0.0045 22.3 7.8 101 227-327 98-209 (218)
486 PRK14956 DNA polymerase III su 36.1 3.2E+02 0.0069 24.4 12.2 32 92-125 196-227 (484)
487 PF08780 NTase_sub_bind: Nucle 35.2 1.5E+02 0.0033 20.5 6.7 79 7-88 5-84 (124)
488 COG2405 Predicted nucleic acid 35.2 1.1E+02 0.0023 21.7 4.3 33 110-142 121-153 (157)
489 PF02607 B12-binding_2: B12 bi 35.1 71 0.0015 19.6 3.4 36 75-110 13-48 (79)
490 PF04910 Tcf25: Transcriptiona 34.5 2.9E+02 0.0063 23.5 20.9 49 72-125 19-67 (360)
491 PF11838 ERAP1_C: ERAP1-like C 34.0 2.7E+02 0.0058 22.9 21.7 82 184-268 146-231 (324)
492 KOG1586 Protein required for f 33.8 2.4E+02 0.0052 22.4 20.7 171 10-199 3-185 (288)
493 KOG2908 26S proteasome regulat 32.5 3E+02 0.0066 23.1 10.2 90 135-224 77-178 (380)
494 PRK13341 recombination factor 32.4 4.5E+02 0.0098 25.1 18.8 46 237-283 258-303 (725)
495 PRK13342 recombination factor 31.8 3.5E+02 0.0075 23.6 19.6 36 181-216 243-278 (413)
496 KOG1839 Uncharacterized protei 31.8 5.7E+02 0.012 26.1 12.2 154 143-296 942-1122(1236)
497 PF11768 DUF3312: Protein of u 31.7 4E+02 0.0086 24.2 11.1 24 31-54 412-435 (545)
498 PF04124 Dor1: Dor1-like famil 31.6 2.2E+02 0.0047 24.0 6.6 27 66-92 109-135 (338)
499 PF10255 Paf67: RNA polymerase 31.6 3.5E+02 0.0076 23.5 14.4 60 136-195 125-191 (404)
500 PF08870 DUF1832: Domain of un 30.8 1.8E+02 0.0038 19.8 6.2 89 80-182 6-96 (113)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-59 Score=420.79 Aligned_cols=336 Identities=21% Similarity=0.330 Sum_probs=327.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. ++.||..+|+.+|.+|++.|++++
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHH
Confidence 6789999999999999999999999999999999999999999999999999987 679999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhc--cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS--EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018882 160 QSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (349)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 319 (349)
+|+.++.+|++.|++++|.++|+.|.+.++.||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhhHHHHHHHHHHh
Q 018882 320 TNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~ 338 (349)
+.|+.+.|.++++.+.+..
T Consensus 766 k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcC
Confidence 9999999999999887654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-58 Score=412.91 Aligned_cols=336 Identities=23% Similarity=0.340 Sum_probs=321.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCC--------------------------------CChhhHHHHHHHHHcCCChhHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCD--------------------------------ANTQSFTALLSAYGRSGLFDKAFSL 49 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~ 49 (349)
|++.|++++|+++|++|.+.|+. |+..+|+.++.+|++.|+++.|.++
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34678888888888888877643 6888999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCC
Q 018882 50 LEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129 (349)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 129 (349)
|+.|.+. ++.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 460 f~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 460 LRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 9999987 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 018882 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS--AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (349)
.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.++.|+..+|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999986 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 288 CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 288 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++++.|.+.+
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999887543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.8e-52 Score=370.74 Aligned_cols=318 Identities=16% Similarity=0.264 Sum_probs=182.4
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++
T Consensus 133 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~ 207 (697)
T PLN03081 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYRE 207 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHH
Confidence 34556666666666666666666666677777777777777777777776664 3566677777777777777777
Q ss_pred HHHHHHHHHhcCCCCchHHH-----------------------------------HHHHHHHhccCcHHHHHHHHHHHhc
Q 018882 82 VQALLSDMSTQGIRPNTVTY-----------------------------------NTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
|.++|++|.+.|+.|+..+| +.|+.+|++.|++++|.++|++|.
T Consensus 208 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 286 (697)
T PLN03081 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP- 286 (697)
T ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-
Confidence 77777777666655555554 444445555555555555555543
Q ss_pred cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 018882 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|
T Consensus 287 ---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 287 ---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred ---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 23445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 286 (349)
+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 555555555555555555555553 2444555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 287 KCFAEMKGVLEVMQQ-RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 287 g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
|..++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|+.++|.++++
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 555555555555543 3555555555555555555555555555443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-52 Score=371.62 Aligned_cols=323 Identities=19% Similarity=0.294 Sum_probs=292.1
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCC------------------------
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP------------------------ 57 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------ 57 (349)
|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 5677777777777777743 577777777777777777777777777776542
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 58 ----------DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 58 ----------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
++.||..+|+.++.+|++.|++++|.++|++|. .+|..+||.++.+|++.|++++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 334566667888889999999999999999986 458999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 018882 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207 (349)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (349)
|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ ||..+||
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999964 6899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHhc
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~ 286 (349)
.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .++.|+..+|+.++.+|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999975 69999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 287 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
|++++|.+++++| ++.|+..+|++++.+|...|+.+.|.++++.+.++.+
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 9999999998765 6789999999999999999999999999998876654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.1e-51 Score=371.48 Aligned_cols=217 Identities=18% Similarity=0.250 Sum_probs=120.4
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
|+++|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|... ++.||..+|+.++.+|++.|+.+.
T Consensus 232 y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHH
Confidence 4556666666666666542 45566666666666666666666666666554 446666666666666666666666
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666655555555555555553 34445555555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|+
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555555555555555555555444444444444444444444444444444444333
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.4e-50 Score=365.20 Aligned_cols=324 Identities=19% Similarity=0.215 Sum_probs=235.8
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|+++.|.+++..+.+. |+.||..+|+.++.+|++.|++++
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHH
Confidence 5678889999999999988888888888888888888888888888888888776 567888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 888888775 3577788888888888888888888888887777788888888888888888888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh----------
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS---------- 231 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 231 (349)
.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|..
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~ 493 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI 493 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHH
Confidence 77777777777777777777777777777766643 2333444444444444444333333333321
Q ss_pred ------------------------CC------------------------------CCCcHHHHHHHHHHHHhcCChhhH
Q 018882 232 ------------------------ER------------------------------IKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 232 ------------------------~~------------------------------~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
.| ..||..+|+.+|.+|++.|+.++|
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHH
Confidence 11 134566777777777777777777
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHH
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ-QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
.++|++|.+.|+.||..+|+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.++++.+
T Consensus 574 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 7777777777777777777777777777777777777777776 4567777777777777777777777777666654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.5e-24 Score=202.47 Aligned_cols=320 Identities=13% Similarity=0.014 Sum_probs=198.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
+.|++++|.++++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+..++.+.|++++|.
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555555555432 3345555555555666666666666665555432 334445555555555566666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
..++++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.+..+.+.+
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 6666555542 2245555556666666666666666666665543 3444555556666666666666666666666543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
|+..++..+..++.+.|++++|...++.+.+..+ .+...+..+...+...|++++|...|+++.+.. +.+..++..
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3335555566666666777777666666665543 356666666677777777777777777776554 455666677
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
+...+...|+ ++|...++.+.+... -++.++..+...+...|++++|..+++++.+.+.. +..++..+..++.+.|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 7777777777 667777776665432 24556666777777778888888888887776543 67777777778888888
Q ss_pred hhhhHHHHHHHH
Q 018882 324 KNHAKEFQDLVE 335 (349)
Q Consensus 324 ~~~a~~~~~~~~ 335 (349)
+++|.++++.+.
T Consensus 887 ~~~A~~~~~~~~ 898 (899)
T TIGR02917 887 KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHh
Confidence 888877777653
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2.6e-24 Score=181.52 Aligned_cols=295 Identities=11% Similarity=0.054 Sum_probs=179.4
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhc
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN---TVTYNTLIDAYGR 110 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 110 (349)
...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334556666777777777776652 34455666666666777777777777776665432111 2345666666677
Q ss_pred cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHH
Q 018882 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 186 (349)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777766542 34455666666777777777777777777665542221 1234455556666777777
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
|...++++.+.... +...+..+...+.+.|++++|..+++++.+.+......++..++.++...|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777766654322 34556666666677777777777777766543222234556666667777777777777776665
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCchhhhHHHHHHHHH
Q 018882 267 SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST---NGMKNHAKEFQDLVEK 336 (349)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 336 (349)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++...++.+.+
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 43 34444566666677777777777777766654 4666666666655543 3455566655555544
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2e-23 Score=194.88 Aligned_cols=324 Identities=14% Similarity=-0.001 Sum_probs=143.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
+.|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.
T Consensus 443 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred hcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555555443 23344455555555555555555555555544432 223333444444444444444444
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC---------------------------------CC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---------------------------------CE 130 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~ 130 (349)
+.++++...+ +.+..++..+...+.+.|+.++|...++++...+ .+
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 4444444332 1233333333344434444444444433333221 12
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
.+...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+..++..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 233344444444444444444444444444332 22333344444444444444444444444443321 1334444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+.... |+..++..++..+.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 44444444444444444444332 2333444444444455555555555555444432 22233444444555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 291 EMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 291 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
+|.+.++.+.+.. +.+...+..+...|...|++++|.+.++.+.+.
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 5555555544432 224444555555555555555555555555443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=3.4e-23 Score=174.71 Aligned_cols=309 Identities=17% Similarity=0.136 Sum_probs=257.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChh
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~ 80 (349)
...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+...+ ....+..+...+.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 45789999999999999874 45677899999999999999999999999987632111 1256788899999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc----hhhHHHHHHHHHccCCHHHHHHHH
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD----VWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
+|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++|.+.+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998863 45778999999999999999999999999987653332 224556777888999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (349)
+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|++++|...++.+.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9998864 34566788889999999999999999999987654434567889999999999999999999999876 45
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018882 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR---LKCFAEMKGVLEVMQQRGCKPDKVTYRT 313 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 313 (349)
+...+..++..+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---- 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR---- 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC----
Confidence 6667788999999999999999999998876 4788888888887775 568999999999999988888776
Q ss_pred HHHHHHhcCch
Q 018882 314 MVRAYSTNGMK 324 (349)
Q Consensus 314 l~~~~~~~g~~ 324 (349)
..|.++|..
T Consensus 355 --~~c~~cg~~ 363 (389)
T PRK11788 355 --YRCRNCGFT 363 (389)
T ss_pred --EECCCCCCC
Confidence 346666643
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.9e-21 Score=172.03 Aligned_cols=328 Identities=9% Similarity=-0.025 Sum_probs=269.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|..+++...... +-+...+..++.+....|+++.|.+.|+++.... |.+...+..+...+...|++++|
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999998863 4456677777788888999999999999999874 55677888889999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
...++++.... +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+.
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 99999998863 346778888999999999999999999988765422 23333333 3478899999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCcH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ----MEYLFRLMRSERIKPSC 238 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~ 238 (349)
...++...+..+...+...|++++|...++++...... +...+..+...+...|++++ |...++...+.. +.+.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~ 284 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNV 284 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCH
Confidence 43344555566678889999999999999999887643 67888889999999999986 899999988764 4567
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHH
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK-VTYRTMVRA 317 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~ 317 (349)
..+..+...+...|++++|...++.+....+. +...+..+..++.+.|++++|...++++... .|+. ..+..+..+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~a 361 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 88999999999999999999999999887643 5667888999999999999999999999876 3444 334445678
Q ss_pred HHhcCchhhhHHHHHHHHHHhhhh
Q 018882 318 YSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
+...|+.++|...++...+..+..
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhh
Confidence 899999999999999888776543
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=6.7e-20 Score=162.61 Aligned_cols=329 Identities=10% Similarity=-0.019 Sum_probs=215.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|
T Consensus 138 ~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 138 YRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 4578888888888888775 4677778888888888888888888888887763 44566777777777777777777
Q ss_pred HHHHHHH-------------------------------------------------------------------------
Q 018882 83 QALLSDM------------------------------------------------------------------------- 89 (349)
Q Consensus 83 ~~~~~~~------------------------------------------------------------------------- 89 (349)
...|...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 5433222
Q ss_pred ---------------------------HhcC-CCC-chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHH
Q 018882 90 ---------------------------STQG-IRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTL 140 (349)
Q Consensus 90 ---------------------------~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (349)
...+ ..| ....++.+...+...|++++|...+++..... +.....|..+.
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la 372 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRA 372 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence 1111 011 12234444445555666666666666666442 22244556666
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (349)
..+...|++++|...++++.+.. +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|+++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHH
Confidence 66667777777777777766653 335566666777777777777777777777665432 4556666677777777777
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH------HHHHHHHHHHHhcCCHHHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT------VFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~ 294 (349)
+|...++...... +.+...++.+...+...|++++|...++.........+. ..++..+..+...|++++|..
T Consensus 451 eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 451 SSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 7777777766542 344566777777777778888888777776654322111 112222223344578888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 295 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
++++....+. .+...+..+...+.+.|++++|.++++...++.++
T Consensus 530 ~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 530 LCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 8887776542 24456788888899999999999988888776553
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.7e-19 Score=159.66 Aligned_cols=292 Identities=10% Similarity=0.014 Sum_probs=241.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
...|++++|++.|+++.+.. |.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 87 l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHH
Confidence 45899999999999999874 5567889999999999999999999999998863 45677888999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
...++.+...... +...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++++.+.
T Consensus 164 ~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988776432 33344333 347889999999999999887653344455556677889999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEK----MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
. +.+...+..+...+...|++++ |...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+.
T Consensus 242 ~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~ 318 (656)
T PRK15174 242 G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP 318 (656)
T ss_pred C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 5 4467888889999999999986 89999999887644 77889999999999999999999999998765 4456
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
..+..+..++...|++++|...++.+...... +...+..+..++...|++++|...|++..+..
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 67788899999999999999999999876432 23344556778999999999999999998763
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=2.5e-18 Score=162.27 Aligned_cols=328 Identities=13% Similarity=0.045 Sum_probs=212.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH------------HHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS------------ILI 70 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~ll 70 (349)
...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.....++...|. ...
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 45799999999999998864 45788899999999999999999999999887632122222221 223
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHH------------
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC------------ 138 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 138 (349)
..+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 46678899999999999998874 3466677788899999999999999999988653 122222222
Q ss_pred ------------------------------HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018882 139 ------------------------------TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 139 ------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (349)
+...+...|++++|.+.+++..+.. +-+...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2233456788888999888888764 335667778888899999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC------------------------------------
Q 018882 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE------------------------------------ 232 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------ 232 (349)
..++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 516 ~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999888764422 2322222222222333333333332221100
Q ss_pred ---CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018882 233 ---RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 233 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 309 (349)
..+.+...+..+...+...|++++|...++.+.+..+ .+...+..++..|...|++++|.+.++...... +.+..
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 0123334455556666666666666666666665543 245566666666666666666666666555432 11344
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 310 TYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
.+..+..++...|++++|.++++.+.+.
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 4555555666666666666666665544
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=6.5e-18 Score=159.54 Aligned_cols=321 Identities=12% Similarity=0.051 Sum_probs=215.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++.++|
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHH
Confidence 46799999999999999874 4567788889999999999999999999998763 344555555544442 2344555
Q ss_pred HHHHHHHHhcCCC--------CchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018882 83 QALLSDMSTQGIR--------PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 83 ~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 154 (349)
..+++.+...... .....+..+...+...|++++|.+.+++..+.. +-+...+..+...+.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5444433221000 001122333444444555555555555554432 2233344444445555555555555
Q ss_pred HHHHHHhcCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHHHH
Q 018882 155 CYEKFQSAGIQPSINTFN--------------------------------------------ILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~~~~~~~~~a~~~ 190 (349)
.++++.+.. +.+...+. .+...+...|+.++|..+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 555544332 11222221 234445566666666666
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018882 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
++. .+.+...+..+...+.+.|++++|...|+...+.. +.+...+..++..+...|++++|...++.+.+...
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p- 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN- 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-
Confidence 651 23456677788899999999999999999998765 55778899999999999999999999998877543
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C---CHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK--P---DKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.+...+..+..++...|++++|.++++.+...... | +...+..+...+...|++++|.+.++....
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666777888999999999999999999876322 2 224566677889999999999999998754
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.1e-17 Score=146.79 Aligned_cols=304 Identities=13% Similarity=-0.015 Sum_probs=242.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
.+......+.+.|++++|+..|++.... .|+...|..+..++.+.|++++|+..++...+.. +.+...|..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3556777899999999999999999876 5788889999999999999999999999998874 33667888899999
Q ss_pred hccCcHHHHHHHHHHHhccCC-----------------------------CcchhhHHHHHH------------------
Q 018882 109 GRAKMFAEMELTLVKMLSEDC-----------------------------EPDVWTMNCTLR------------------ 141 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~------------------ 141 (349)
...|++++|+..+......+. +++...+..+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999876544321110 000000000000
Q ss_pred ------------H------HHccCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018882 142 ------------A------FGNSGQIDTMEKCYEKFQSAG-I-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 142 ------------~------~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
. ....+++++|.+.|+...+.+ . +.....+..+...+...|++++|...+++..+..+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~- 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR- 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence 0 012357888999999988764 2 234567888888889999999999999999886533
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
....|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+... .+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence 46788888999999999999999999998764 45678899999999999999999999999988764 36777888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
++.+.|++++|...|++..... +.+...+..+..++...|++++|.+.++...++.+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999998763 235788899999999999999999999998887653
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-18 Score=143.49 Aligned_cols=326 Identities=12% Similarity=0.094 Sum_probs=226.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH-HHHHHHHhcCChhH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS-ILIKSCLKAFAFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~ 81 (349)
-..|++++|+..++.+.+.. +..+..|..+..++...|+.+.|.+.|....+. .|+..... .+...+...|+..+
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccch
Confidence 35688999999999998873 446788989999999999999888888887765 34433322 22222333455555
Q ss_pred HHHHHHHHHhcC--------------------------------CCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 82 VQALLSDMSTQG--------------------------------IRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 82 a~~~~~~~~~~~--------------------------------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
|...+.+.++.. +.|+ ...|-.|...|...+.+++|...|.+.....
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 555544444331 1121 2344455555555555555555555554432
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
+.....+..+...|...|.++.|+..|++.++.. +.=...|+.|..++-..|++.+|.+.+.+.....+. ...+.+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 2234455555555667777777777777777653 223567888888888888888888888888776543 5677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-HHHHHHHHHHHHhcC
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-TVFFNCLVDAYGRLK 287 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 287 (349)
|...+...|.++.|..+|....+.. +--....+.|...|-+.|++++|...+++..+.. |+ ...|+.+...|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhh
Confidence 8888888888888888888877642 2234567888888888888888888888887643 43 457888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 288 CFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 288 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+.+.|...+.+.+.. .|. ...++.|...|..+|+..+|+..++...++++.
T Consensus 437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 888888888888765 343 567888888899999999999888888777653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=8.5e-17 Score=145.64 Aligned_cols=327 Identities=10% Similarity=-0.012 Sum_probs=179.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|.++|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|
T Consensus 60 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~A 135 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDE 135 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHH
Confidence 34566666666666666542 3345555566666666666666666666665542 33444 55566666666666666
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHH----------------------------------------
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV---------------------------------------- 122 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------- 122 (349)
...++++.+.. +-+...+..+..++...+..+.|++.++
T Consensus 136 l~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 136 LRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 66666666653 2233333444444444444433333222
Q ss_pred ------HHhcc-CCCcchh-hHH----HHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 018882 123 ------KMLSE-DCEPDVW-TMN----CTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 123 ------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+. ....+...+...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 22211 0011110 000 0022334556667777777776665421 221 11224556666777777777
Q ss_pred HHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCc---HHHHHHHHHHHHhcC
Q 018882 190 VMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-----------KPS---CVTLCSLVRAYGHAG 252 (349)
Q Consensus 190 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~ 252 (349)
.|+.+.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 777665433211 123344555566677777777777776654321 112 123345556666777
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCchhhhHHHH
Q 018882 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
++++|+..++.+....+ .+...+..+...+...|++++|++.+++..... |+ ...+......+...|++++|...+
T Consensus 374 ~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 374 DLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777777665543 356666777777777777777777777776653 33 455555556667777777777777
Q ss_pred HHHHHHh
Q 018882 332 DLVEKMD 338 (349)
Q Consensus 332 ~~~~~~~ 338 (349)
+.+.+..
T Consensus 451 ~~ll~~~ 457 (765)
T PRK10049 451 DDVVARE 457 (765)
T ss_pred HHHHHhC
Confidence 7666544
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.9e-16 Score=143.33 Aligned_cols=330 Identities=9% Similarity=0.008 Sum_probs=246.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
...|+.++|++++....... +.+...+..+...+...|++++|.++|++..... +.+...+..+...+...|++++|
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45799999999999998742 4556679999999999999999999999988763 55677788888999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH--------
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK-------- 154 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-------- 154 (349)
...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|++
T Consensus 103 ~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 103 LVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 99999998873 44556 8888899999999999999999999874 3344444555556655555554443
Q ss_pred --------------------------------------HHHHHHhc-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHH
Q 018882 155 --------------------------------------CYEKFQSA-GIQPSIN-TFN----ILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 155 --------------------------------------~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~ 190 (349)
.++.+.+. ...|+.. .+. ..+..+...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33343322 1122211 111 113345677899999999
Q ss_pred HHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 191 MEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
|+.+.+.+.+ |+. ....+..++...|++++|...|+.+.+..... .......+..++...|++++|...++.+..
T Consensus 260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 9999877532 322 22225678899999999999999987643111 134566677788999999999999998876
Q ss_pred CCC-----------Cch---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 267 SDI-----------MLD---TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 267 ~~~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
..+ .|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 532 122 2355677888999999999999999998873 3367888899999999999999999999
Q ss_pred HHHHHhhh
Q 018882 333 LVEKMDET 340 (349)
Q Consensus 333 ~~~~~~~~ 340 (349)
...++.+.
T Consensus 418 ~al~l~Pd 425 (765)
T PRK10049 418 KAEVLEPR 425 (765)
T ss_pred HHHhhCCC
Confidence 98887654
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=3.8e-18 Score=140.46 Aligned_cols=310 Identities=14% Similarity=0.093 Sum_probs=257.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|++++|...+-+..+.. +--..+|..|...+-.+|++..|+..|++..+.. +.-...|-.|...|...+.+++|.
T Consensus 196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHH
Confidence 4688888888888877753 2336789999999999999999999999998873 233578999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
..+.+..... +-....+..+...|...|..+-|+..|++.++.. +.-...|+.+..++-..|+..+|.+.|.+.....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999988763 3356788888899999999999999999999764 3336789999999999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHH
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLC 242 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 242 (349)
+.-....+.|...+...|.+++|..+|....+.... -....+.|...|-+.|++++|+..+++.... .|+ ...|+
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~ 426 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALS 426 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHH
Confidence 335677899999999999999999999998876533 4678899999999999999999999998764 555 57899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhc
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTN 321 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 321 (349)
.+...|-..|+.+.|.+.+.+.+..++. =...++.|...|-..|+..+|+.-++...+. +|| +..|..++.+.---
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHH
Confidence 9999999999999999999999876532 3567888999999999999999999999876 566 45666666665333
Q ss_pred Cchh
Q 018882 322 GMKN 325 (349)
Q Consensus 322 g~~~ 325 (349)
.++.
T Consensus 504 cdw~ 507 (966)
T KOG4626|consen 504 CDWT 507 (966)
T ss_pred hccc
Confidence 3333
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=3.7e-15 Score=133.13 Aligned_cols=168 Identities=10% Similarity=0.029 Sum_probs=114.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANT--QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 79 (349)
..+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.... .+........+...+...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCH
Confidence 357899999999999988763 443 233 7777888889999999999888721 133344444446678888999
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
++|.++|+++.+.. +-++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999988874 335667777788888888888898888888765 455555544444444455665588888887
Q ss_pred HhcCCCCCHHHHHHHHHHH
Q 018882 160 QSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~ 178 (349)
.+.. +-+...+..++.++
T Consensus 196 l~~~-P~n~e~~~~~~~~l 213 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEIL 213 (822)
T ss_pred HHhC-CCCHHHHHHHHHHH
Confidence 7653 22343433333333
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=6e-15 Score=134.48 Aligned_cols=267 Identities=9% Similarity=-0.048 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44555555555544 5555666655555544 244333333333444566666666666665433 233333444455
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
.+.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 5566666666666666665543 2222222223333334466666666666665543 345556666666666666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
|...+++..+.. +.+...+..+..++...|++++|+..++...+..+ -+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666665543 33445555555666666666666666666655443 2455566666666666666666666666665
Q ss_pred cCCCCCH-HHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 302 RGCKPDK-VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 302 ~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.. |+. .+.........+..+++.+.+.+++...+...
T Consensus 706 l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 706 DI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred cC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 42 322 33334444444555555555555555554443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=8.5e-15 Score=130.86 Aligned_cols=328 Identities=11% Similarity=0.035 Sum_probs=193.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHH
Confidence 4567777777777776653 334555666666666777777777777776655 344444433333333344554577
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHH-----------------------------------------
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV----------------------------------------- 122 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------------- 122 (349)
+.++++.+.. +-+...+..+..++.+.|-...|.++..
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 7777776653 2244444555555544443333332222
Q ss_pred -------HHhcc-CCCcch-----hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018882 123 -------KMLSE-DCEPDV-----WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 123 -------~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
.+... +..|.. ....-.+.++...++..++++.|+.+...+.+....+-..+.++|...+++++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 11110 001211 11112344556667777777777777776655455566777777777777777777
Q ss_pred HHHHHHhcCC-----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------CCcH-HHHHHHHHHHHh
Q 018882 190 VMEYMQKYHY-----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-------------KPSC-VTLCSLVRAYGH 250 (349)
Q Consensus 190 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~ 250 (349)
+++.+..... .++......|..++...+++++|..+++.+.+... .||- ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 7777754321 22333345677777777777777777777765211 1111 123344566677
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
.|+..+|++.++.+....+ -|......+...+...|.+..|...++...... +-+..+......++...|++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 7777777777777766543 477777777777777777777777776666552 12455566666677777777777777
Q ss_pred HHHHHHHh
Q 018882 331 QDLVEKMD 338 (349)
Q Consensus 331 ~~~~~~~~ 338 (349)
.+.+....
T Consensus 507 ~~~l~~~~ 514 (822)
T PRK14574 507 TDDVISRS 514 (822)
T ss_pred HHHHHhhC
Confidence 66654443
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=8.4e-15 Score=122.81 Aligned_cols=287 Identities=10% Similarity=0.027 Sum_probs=221.2
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHH--HHHHHHhccCcHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNT-YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN--TLIDAYGRAKMFA 115 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 115 (349)
..|+++.|.+.+....+.. ++... |.....+..+.|+++.+...+.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 3699999998888766542 22333 334455558899999999999999875 45554333 3367888999999
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI-------NTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 188 (349)
.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999998876 556778888999999999999999999999988654322 12333344444455566667
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
++++.+.+.- +.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++++++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777664432 347888889999999999999999999998873 4555332 2334445699999999999988765
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+ -|+..+..+...+.+.+++++|.+.|+...+. .|+..++..+..++.+.|+.++|.++++.-..+..
T Consensus 325 P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 325 G-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4 47778889999999999999999999999986 68999999999999999999999999987765543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=7.4e-15 Score=116.19 Aligned_cols=309 Identities=13% Similarity=0.155 Sum_probs=190.9
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 018882 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT 103 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (349)
+.+..++..+|.++++--..++|.+++++.....+ +.+..+||.+|.+-.-..+ .+++.+|....+.||..|||+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 44677888899998888888999999988877644 7788888888866543322 678888888888888888888
Q ss_pred HHHHHhccCcHHH----HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH-HHHHHHHHHhc----CCC----CCHHH
Q 018882 104 LIDAYGRAKMFAE----MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT-MEKCYEKFQSA----GIQ----PSINT 170 (349)
Q Consensus 104 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~~~~ 170 (349)
++++..+.|+++. |.+++.+|.+.|+.|+..+|..+|..+++.++..+ +..++.++... .++ .|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 8888888887665 45667778888888888888888888888877644 44444443321 122 23444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYH----YSWT---IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|..|+-.-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 5556666666666666655544332210 1111 12233334444444444445555555544444444444444
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCC------------------------------------------------------C
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSD------------------------------------------------------I 269 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------------------------------~ 269 (349)
++++....|.++-.-++|..++..| .
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 5554444444444444443333222 1
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC----KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
.......+.+.-.+.+.|+.++|.++|..+.+.+- .|......-++..-.+......|..+++.+...
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 12344556666677788888888888887755432 233333445556667777777787777776443
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=3.6e-14 Score=129.50 Aligned_cols=325 Identities=14% Similarity=0.049 Sum_probs=244.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcCC---hh
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT-PDCQPDVNTYSILIKSCLKAFA---FD 80 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~---~~ 80 (349)
.+...++.+.+..|.+.. +-+......+.-...+.|+.++|..+|+..... +...++.....-++..+.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 456667777777777652 346677777777788999999999999988763 2223344445567777776655 22
Q ss_pred HHHHH----------------------HHHHHhc-CC-CC--chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchh
Q 018882 81 KVQAL----------------------LSDMSTQ-GI-RP--NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW 134 (349)
Q Consensus 81 ~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 134 (349)
++..+ ....... +. ++ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 1121111 11 33 56778888888876 8888999988888765 45554
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
....+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...++...+..+. +...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence 4444455567899999999999998664 445555667788889999999999999999876522 3333444444455
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..|++++|...+++..+. .|+...+..+..++.+.|++++|...++......+ .+...++.+..++...|++++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999875 45688899999999999999999999999998764 367888899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 295 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+++..+... -+...+..+..++...|++++|...++...+..+.
T Consensus 665 ~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 665 MLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999998743 36788999999999999999999999999887753
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=8.2e-15 Score=122.87 Aligned_cols=283 Identities=10% Similarity=0.014 Sum_probs=221.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHhcCChhH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTAL-LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS--ILIKSCLKAFAFDK 81 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~ 81 (349)
.|++++|.+.+....+.. +++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence 699999998888776642 233333333 44457999999999999999876 46654333 33678889999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcch-------hhHHHHHHHHHccCCHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV-------WTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 154 (349)
|...++++.+.. +-++.....+...|.+.|++++|.+++..+.+....++. ..|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999885 447788889999999999999999999999987644322 233344444445556677777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018882 155 CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
+++.+.+. .+.+......+...+...|+.++|..++++..+.. |+.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 77776544 35578888999999999999999999999988743 444322 3344446699999999999988664
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
+-|...+..+.+.|...+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|..++++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677889999999999999999999999885 47888888999999999999999999997754
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=5.8e-18 Score=135.72 Aligned_cols=263 Identities=15% Similarity=0.084 Sum_probs=111.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Q 018882 32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA 111 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (349)
.+...+.+.|++++|+++++........+.|...|..+...+...++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 5577888999999999999654433211345555666667777889999999999999887533 66677777777 788
Q ss_pred CcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 112 KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPSINTFNILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (349)
+++++|.+++....+. .++...+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998887665 3566677788888999999999999999977543 345777888889999999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018882 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
+++..+..+. +....+.++..+...|+.+++..++....... +.++..+..+..++...|++++|...++...+...
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p- 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP- 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence 9999887643 67888889999999999999888888876654 45667788899999999999999999999887653
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
.|+.....+..++...|+.++|.++.++...
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4888888999999999999999998876643
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=1.1e-14 Score=122.75 Aligned_cols=291 Identities=10% Similarity=-0.018 Sum_probs=212.2
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch--HHHHHHHHHHhccCc
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKM 113 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~ 113 (349)
....|+++.|.+.+.+..+. .|+ ...+-....+..+.|+++.|.+.+.+..+.. |+. .........+...|+
T Consensus 94 a~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCC
Confidence 33679999999999888765 344 3444555677888899999999999987653 444 334445788889999
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHH
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY---GKAGHFEKMSAV 190 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~ 190 (349)
++.|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+...+.
T Consensus 169 ~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 169 LHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999876 4466788899999999999999999999999987543332212111221 222333333345
Q ss_pred HHHHHhcCC---CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH---HHHHHHHHHhcCChhhHHHHHHHH
Q 018882 191 MEYMQKYHY---SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT---LCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 191 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
+..+.+..+ +.++..+..+...+...|+.++|.+++++..+.. |+... .....-.....++.+.+.+.++..
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 544444332 1378888899999999999999999999998764 33321 111112223457788888888887
Q ss_pred hhCCCCchH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 265 DNSDIMLDT--VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 265 ~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.+..+ -|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76543 245 677789999999999999999999644444578999899999999999999999999987533
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=8.6e-18 Score=134.75 Aligned_cols=262 Identities=14% Similarity=0.106 Sum_probs=109.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-CCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018882 68 ILIKSCLKAFAFDKVQALLSDMSTQG-IRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 68 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
.+...+.+.|++++|.++++...... .+.+...|..+...+...++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45777888999999999996655443 23355555566667777889999999999998765 3355566677766 688
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHH
Q 018882 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYL 225 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 225 (349)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999888776654 3466667788888899999999999998876533 345778888888899999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018882 226 FRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 305 (349)
+++..+.. +.|......++..+...|+.+++..+++...+.. +.|+..+..+..+|...|+.++|...|++..... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99988764 3457778888999999999999888888877654 3466778889999999999999999999988763 2
Q ss_pred CCHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 306 PDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.|+.....+..++...|+.++|.++.+.+.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3788888899999999999999988876654
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=2.1e-14 Score=121.06 Aligned_cols=291 Identities=11% Similarity=-0.021 Sum_probs=212.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANT-QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFD 80 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~ 80 (349)
..|+++.|.+.+.+..+. .|+. ..+-....+..+.|+++.|.+.+.+..+. .|+. .........+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHH
Confidence 579999999999988776 3543 33444566788899999999999998765 3443 33444578888999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH---HccCCHHHHHHHHH
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF---GNSGQIDTMEKCYE 157 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~ 157 (349)
.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+.+.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999985 3367788899999999999999999999999886443332211111111 22222233333444
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH-HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 158 KFQSAGI---QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY-NIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 158 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
.+.+... +.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4444321 237888999999999999999999999999887543221111 222222344578888888888877653
Q ss_pred CCCcH--HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 234 IKPSC--VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 234 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344 567789999999999999999999654444567888888999999999999999999997643
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.3e-14 Score=114.83 Aligned_cols=315 Identities=13% Similarity=0.161 Sum_probs=225.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--cCCChh-HHHHHHHHhhcCC------------------CCCCC
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG--RSGLFD-KAFSLLEHMKNTP------------------DCQPD 62 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~a~~~~~~~~~~~------------------~~~~~ 62 (349)
.+|.+..+.-+++.|.+.|++.+...-..|+..-+ .+.++- .-++.|-.|.+.+ ..+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 46778888889999999988878777666665422 222221 2233333343321 12456
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
..+|.++|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-... .+++.+|.+....||..|+|+++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 678899999999998899999999988887778889999998876543322 6788888888889999999999999
Q ss_pred HHccCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----cCCCC----chhhHHHH
Q 018882 143 FGNSGQIDT----MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK-MSAVMEYMQK----YHYSW----TIVTYNIV 209 (349)
Q Consensus 143 ~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l 209 (349)
..+.|+++. |.+++.+|++.|+.|+..+|..+|..+++.++..+ +..++.++.. ..++| |...|...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 999997765 56778888899999999999999998888887644 3444444432 22222 34556667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSE----RIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
+..|.+..+.+-|..+..-+... -+.|+. .-|..+....+.....+.....++.+.-.-.-|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 77777888888888877665432 123332 33556667777778888888888888877667888888888898
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
..-.|.++-..++|.+++..|..-+...-..++..+++..
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 8889999999999998888875555555555555555544
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=4.5e-14 Score=107.73 Aligned_cols=294 Identities=14% Similarity=0.081 Sum_probs=223.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCc--hHHHHHHHHHHhccCcHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG-IRPN--TVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~ 115 (349)
-+++.++|.++|-+|.+.+ +.+..+--+|.+.+-+.|..+.|+.+.+.+.++. .+-+ ....-.|..-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3567899999999998863 4556667788899999999999999999988762 1111 123344667788899999
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
.|+++|..+.+.+ ..-......++..|-...+|++|+++-.++.+.+..+. ...|.-+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999998865 44455678899999999999999999999988765543 345667777777788999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018882 192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (349)
.+..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|++++...++..+.+....
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g- 281 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG- 281 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence 999887644 566666777888999999999999999998876666778889999999999999999999988876433
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
...-..+...-....-.+.|..++.+-... +|+...+..++..-...+....+.+-+..+++|-..
T Consensus 282 -~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 -ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333334444444444556666666555554 689999999999877665554566666666666543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=1.9e-13 Score=117.59 Aligned_cols=324 Identities=15% Similarity=0.133 Sum_probs=251.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++++|..++.++.+.. +.+...|..|...|-+.|+.+++...+-...... +.|...|..+.....+.|++++|.-
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHH
Confidence 499999999999999874 6678899999999999999999999987776653 6778899999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhh----HHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWT----MNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+|.+.++.. +++...+-.-...|-+.|+...|...|.++.+...+.|..- ....++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999884 45666666677889999999999999999998753333322 2334566777788888998888876
Q ss_pred hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCchhhHHHHHHH
Q 018882 161 SA-GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---------------------------SWTIVTYNIVIDA 212 (349)
Q Consensus 161 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~ 212 (349)
.. +-..+...++.++..+.+...++.+......+..... .++.... -++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 63 2244666788899999999999999888877765211 1222221 22233
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSER--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
+......+....+........ +.-+...|..+..++...|++.+|..++..+......-+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 344444455555555555555 344567889999999999999999999999988766667889999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 291 EMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 291 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
+|.+.|+..... .| +...-..|...+.+.|+.++|.+.++.+.
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999876 33 34455667777899999999999887654
No 35
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=3e-13 Score=106.29 Aligned_cols=293 Identities=14% Similarity=0.115 Sum_probs=197.4
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 119 (349)
.|++.+|.++..+-.+.+ ......|..-..+.-+.|+.+.+-.++.+..+..-.++....-.........|+...|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 577777777777766553 233445556666667777777777777777765334555566666667777777777777
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI-------NTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
-++++...+ +...........+|.+.|++.....++..+.+.|.--+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 777777665 445566677777777777777777777777777654432 356666666665555555555555
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch
Q 018882 193 YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (349)
..... .+-++..-..++.-+.+.|+.++|.++..+..+.+..|+ ... .-.+.+.++++.-.+..+.-.+... -+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~-~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHP-ED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCC-CC
Confidence 55433 233566666777777888888888888887777665554 222 2235566777766666666544322 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhc
Q 018882 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (349)
+..+.+|...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.+..+....+-.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 577778888888888888888888866654 678888888888888888888888887777655544443
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.4e-13 Score=103.89 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=223.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a 82 (349)
..+.++|+++|-+|.+.. +.+..+.-+|...|.+.|..++|+.+.+.+.++++..-+. .+...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 568899999999999853 4556777889999999999999999999998875432222 2344567778889999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc----hhhHHHHHHHHHccCCHHHHHHHHHH
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD----VWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
+++|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999998652 3556778899999999999999999998887654433 23456666777778899999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018882 159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
..+.+. .....--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+....+
T Consensus 206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-- 282 (389)
T COG2956 206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-- 282 (389)
T ss_pred HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--
Confidence 888752 24445556778889999999999999999998866667889999999999999999999999988764333
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR---LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 302 (349)
..-..+.+......-.+.|...+.+-... +|+...+..+|..... .|...+.+.+++.|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33444444444445566666666554443 4899999999988755 34566777778887654
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.5e-14 Score=120.47 Aligned_cols=289 Identities=12% Similarity=0.103 Sum_probs=190.7
Q ss_pred ChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccCcHHHHH
Q 018882 42 LFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQG--IRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
+.++|+..|+++... .+| ......+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+--+-+.- +--
T Consensus 334 ~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHH
Confidence 356777777775554 233 3445566777888888888888888777652 1124556666554332211 111
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
-+-+.+.+.. +-.+.+|..+..+|.-.++.+.|++.|++..+.. +-...+|+.+..-+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 1222333222 4456778888888888888888888888877653 2256677777777777778888888887776543
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018882 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
.. +...|--+...|.+.++++.|+-.|+.+.+.+ +-+......+...+-+.|+.++|+++++++.....+ |+..--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 32 44555556677778888888888888777655 445566667777777788888888888887766543 5555455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhc
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (349)
.+..+...+++++|+..++++++. .| +...+..+...|.+.|+.+.|..-+..+.++++.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 666677778888888888888775 34 4556677777788888888888877777777765543
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=6.9e-13 Score=104.27 Aligned_cols=293 Identities=12% Similarity=0.042 Sum_probs=235.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
-.|+|.+|+++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+..+ .++...+-+........|+.+.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHH
Confidence 369999999999998888633 344566666777889999999999999988744 567777888888999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcch-------hhHHHHHHHHHccCCHHHHHHHH
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV-------WTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
.-++++.+.+ +-++........+|.+.|++.+...++.++.+.+.-.+. .+|..++.-....+..+.-...|
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999886 347788899999999999999999999999999865543 46777777777777777767777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (349)
+..... ...++..-..++.-+.++|+.++|.++..+..+.+..|. ... .-.+.+-++...-.+..+.-.+.. +-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 776554 355677788889999999999999999999998887665 222 223456777777777776654432 44
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
++..+..+...|.+.+.+.+|...|+...+. .|+...|+.+..+|.+.|+..+|.++.++....-..|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 5588899999999999999999999987765 57999999999999999999999999988775433443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.3e-14 Score=120.73 Aligned_cols=291 Identities=12% Similarity=0.015 Sum_probs=228.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChhHHHHH
Q 018882 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~ 85 (349)
+..+|...|..+.++ +..+..+...+..+|...+++++|.++|+.+++.... ..+...|.+.+.-+-+.-.. -.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L---s~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL---SYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH---HHH
Confidence 457889999996665 3344567778899999999999999999999886432 23677888887654432211 122
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018882 86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
-+.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+....+++.|...|...+... +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 33344432 4478899999999999999999999999999774 3478889999888999999999999999887542 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
-+-..|.-+.-.|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+++++++.... +.|+..--.-+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 23444555677899999999999999999988755 77778888889999999999999999998765 34444444556
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
..+...+++++|...++++++.-+ -+...+..+...|.+.|+.+.|+.-|--+.+...++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 677889999999999999998643 3667788899999999999999999988887754443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.5e-13 Score=105.38 Aligned_cols=256 Identities=8% Similarity=0.033 Sum_probs=127.3
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCchHHHHHHHHHHhccCcH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 114 (349)
+-...+.+++..-.+..... |.+-+...-+....+.....++++|+.+|+++.+... --|..+|..++-. +...-
T Consensus 237 ~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 33344555555555555444 2222222223333334445566666666666655411 0134444444422 22111
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
.-+ -+-......+ +-.+.|+..+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|....+...|..-++..
T Consensus 314 kLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 100 0111111111 2223445555555555566666666666655553 224445555555566666666666666666
Q ss_pred HhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH
Q 018882 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (349)
.+.++. |...|-.+.++|.-.+.+.-|+-.|++..+.. +-|...|..|.++|.+.++.++|++.|......+- .+..
T Consensus 391 vdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~ 467 (559)
T KOG1155|consen 391 VDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGS 467 (559)
T ss_pred HhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchH
Confidence 555433 55666666666666666666666666555443 34555566666666666666666666665555442 2445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
.+..|.+.|-+.++..+|...|+...+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555566666666666666555554443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1e-12 Score=105.19 Aligned_cols=259 Identities=11% Similarity=0.049 Sum_probs=205.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCC--CcchhhHHHHHHHHHccCC
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 148 (349)
.++-.....+++.+-...+...|++-+...-+....+.....++++|+.+|+++.+... --|..+|..++-+-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444456666777777777778776666666666677778899999999999988742 1256677766544332222
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
. ..+.+-...--+--+.|+..+.+-|+-.++.++|...|+...+.+.. ....|+.+..-|....+...|.+.++.
T Consensus 315 L----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 315 L----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2 22222221111334567888999999999999999999999998755 678899999999999999999999999
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 018882 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 308 (349)
+++.. +.|...|-.|.++|.-.+.+.-|+-.|++.....+ -|+..|.+|..+|.+.++.++|++.|.+....|-. +.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 99876 67889999999999999999999999999998764 58999999999999999999999999999987633 67
Q ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
..+..+...|.+.++.++|..++++..+.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88999999999999999999999887663
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=3.6e-12 Score=109.98 Aligned_cols=303 Identities=12% Similarity=0.107 Sum_probs=234.4
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
..+...|++++|.+++.++.+.. +.+...|.+|...|-..|+.+++...+-...... +-|...|..+.......|++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33445599999999999999875 6788999999999999999999998876665553 44778899999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcCCHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF----NILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~ 190 (349)
++|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+ ..++..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999876 556666666778899999999999999999987543333333 3345666777778999998
Q ss_pred HHHHHhc-CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCCcHHHHH
Q 018882 191 MEYMQKY-HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER---------------------------IKPSCVTLC 242 (349)
Q Consensus 191 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~ 242 (349)
++..... +-..+...++.++..+.+...++.+......+.... ..++..+ .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8877652 233467788899999999999999998887776511 1222222 1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNSD--IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
.+.-++.+....+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+.++|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334555555565666666665555 3345678999999999999999999999999987555567799999999999
Q ss_pred cCchhhhHHHHHHHHHHhhhhh
Q 018882 321 NGMKNHAKEFQDLVEKMDETCL 342 (349)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~ 342 (349)
.|.+++|.++++++....+...
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCch
Confidence 9999999999999988776543
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=4.4e-12 Score=101.68 Aligned_cols=312 Identities=14% Similarity=0.093 Sum_probs=160.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-----------CCCHHHHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-----------QPDVNTYSILI 70 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~ll 70 (349)
|.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|...++. .|+....+-.+
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 45778888888888888775 477655545555566678888888888888765431 22222222211
Q ss_pred -----HHHHhcCChhHHHHHH---HHHHhcCCCCchH-------------HHH--------HHHHHHhccCcHHHHHHHH
Q 018882 71 -----KSCLKAFAFDKVQALL---SDMSTQGIRPNTV-------------TYN--------TLIDAYGRAKMFAEMELTL 121 (349)
Q Consensus 71 -----~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~-------------~~~--------~l~~~~~~~~~~~~a~~~~ 121 (349)
+-.-+.+. ..|++.. -+++.--+.|+-. .+. .-..-+.+.|+++.|++++
T Consensus 364 ~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11111111 1111111 1111111112110 000 0112356778888888777
Q ss_pred HHHhccCCCc---------------------chh----------hHHHHH-----HHHHccCCHHHHHHHHHHHHhcCCC
Q 018882 122 VKMLSEDCEP---------------------DVW----------TMNCTL-----RAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 122 ~~~~~~~~~~---------------------~~~----------~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+-..+..-+. +.. -||.-. ......|++++|.+.|.+...+...
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 6654432111 011 111100 1122456778888888877765433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
-....|++- -.+-..|++++|++.|-++...- ..+....-.+...|....+...|++++.+.... ++.|+.+++.|.
T Consensus 523 c~ealfnig-lt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFNIG-LTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 233333332 23556777788777776654321 124555566666666666666676666555332 344556666666
Q ss_pred HHHHhcCChhhHHHHH----------------------------------HHHhhCCCCchHHHHHHHHHHH-HhcCCHH
Q 018882 246 RAYGHAGKPEKLGSVL----------------------------------RFIDNSDIMLDTVFFNCLVDAY-GRLKCFA 290 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~----------------------------------~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 290 (349)
..|-+.|+-..|.+.+ +... -+.|+..-|..++..| .+.|++.
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHH
Confidence 6666666655554433 3222 1345555565554443 3356666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 291 EMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 291 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
.|.+++++..+. ++.|.....-|++.+...|
T Consensus 678 ka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 678 KAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 666666665543 3335555555555555544
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=3.3e-12 Score=111.05 Aligned_cols=330 Identities=13% Similarity=0.058 Sum_probs=179.4
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF---- 77 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---- 77 (349)
|...|++++|...|....+..-...+..+..|.+.+.+.|+++.+...|+.+.+.. +.+..+...+...|...+
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhH
Confidence 34567777777776666554311113344556666777777777777777666552 334445555555555443
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHh----ccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML----SEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
..+.|..++.+..+.- +.|...|-.+...+-...-+.. +.+|.... ..+..+.+...|.+...+...|++..|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 3344555554444432 3355555555555544433322 44444332 2333455667777777777778888887
Q ss_pred HHHHHHHhc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------------------
Q 018882 154 KCYEKFQSA---GIQPSI------NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS------------------------ 200 (349)
Q Consensus 154 ~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------------ 200 (349)
..|...... ...++. .+-..+...+-..++.+.|.+.|..+.+..+.
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHH
Confidence 777776544 111222 12223444444555666666666655543311
Q ss_pred ---------CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHh------------cCChhhHH
Q 018882 201 ---------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKPSCVTLCSLVRAYGH------------AGKPEKLG 258 (349)
Q Consensus 201 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~ 258 (349)
.++..++.+...+.....+..|.+-|...... ...+|..+...|...|.. .+..++|+
T Consensus 553 lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl 632 (1018)
T KOG2002|consen 553 LKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL 632 (1018)
T ss_pred HHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence 12333333333444333333333322222211 112344444444443331 23356677
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
++|..+.+..+ .|...-|-+.-+++..|++.+|..+|.+..+... -...+|..+..+|..+|++..|++.|+...+.
T Consensus 633 q~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 633 QLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776654 3666667777777777888888888877777643 24556777777777777777777777766554
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=3.1e-12 Score=112.07 Aligned_cols=249 Identities=10% Similarity=-0.022 Sum_probs=143.9
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCL---------KAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
++|...|++..+.. +.+...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|++
T Consensus 278 ~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 56777777776653 233445554444333 1234677777777777663 23556666666677777777
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...++++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 77777777777664 334556666777777777777777777777765422 2223333344455667777777777776
Q ss_pred HhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCchH
Q 018882 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-IMLDT 273 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 273 (349)
.....+-++..+..+..++...|+.++|...+.++.... +.+....+.+...+...| +.|...++.+.+.. ..+..
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 654322244456666667777777777777777764432 222333444445555555 35666555544321 11111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
..+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 111 33344555665555554 6666553
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=4.3e-11 Score=100.19 Aligned_cols=326 Identities=10% Similarity=0.024 Sum_probs=184.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
+.+.++-|..+|....+- ++-+...|......--..|..++...+|++.... ++.....|....+..-..|++..|.
T Consensus 528 k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 445555666666665554 2334455555555555556666666666665553 1333344444445555556666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
.++....+.. +-+...|-.-+..-..+..++.|..+|.+.... .|+...|..-+..---.++.++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 6666655543 224455555555555666666666666655543 344445544444444555556666655555543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++.-...|-.+...+-+.++.+.|...|..-.+.- +-.+..|-.+...--+.|.+-.|..+++...-.+ +.+...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 12223334444445555555555555554433332 2234444444444444455555555555544333 334445555
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhC-----------------------------CCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNS-----------------------------DIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.|+.-.+.|+.+.|..+....... .+.-|+++.-.+...|....+++.|.+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~ 838 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKARE 838 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444332211 123467777788888999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 295 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.|.+....+.. +..+|..+..-+.++|.-++-.+++.++..-++
T Consensus 839 Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 839 WFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 99999987533 568899999999999998888888888766544
No 47
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=3e-11 Score=102.74 Aligned_cols=289 Identities=15% Similarity=0.137 Sum_probs=204.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH-HHHHHHHHhc----
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY-SILIKSCLKA---- 76 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~---- 76 (349)
+...|++++|++.++.-... +.............+.+.|+.++|..+|..+... .|+...| ..+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccc
Confidence 45689999999999886654 3444566777888899999999999999999987 3555554 4555544222
Q ss_pred -CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHH-HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018882 77 -FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA-EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 77 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 154 (349)
.+.+....+++++... -|.......+.-.+.....|. .+...+..+...|+++ +|+.+-..|.......-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 3567778888888766 244444444433333333443 3455666777777544 56666666666655555566
Q ss_pred HHHHHHhc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 155 CYEKFQSA----G----------IQPSI--NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 155 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
++...... + -+|+. .++..+...|...|++++|...++...++.+. .+..|..-...+-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 66555432 1 13344 34466678888999999999999999887643 47888888999999999
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH------HH--HHHHHHHHhcCCHH
Q 018882 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV------FF--NCLVDAYGRLKCFA 290 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~~~ 290 (349)
+.+|.+.++..+... .-|...-+..+..+.+.|+.++|.+++....+.+..|... +| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999998776 4567777788888999999999999999887765433221 22 44578899999999
Q ss_pred HHHHHHHHHHh
Q 018882 291 EMKGVLEVMQQ 301 (349)
Q Consensus 291 ~a~~~~~~m~~ 301 (349)
.|++-|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88877766543
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.1e-10 Score=94.22 Aligned_cols=324 Identities=10% Similarity=0.060 Sum_probs=234.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++..|.++|++..+- .|+..+|++.+..=.+.+.++.|..+++...-. .|++.+|--....-.+.|+...+..
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 58889999999998875 799999999999999999999999999998865 7899998888888888888888888
Q ss_pred HHHHHHhc-CC-CCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc-----------------------------------
Q 018882 85 LLSDMSTQ-GI-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----------------------------------- 127 (349)
Q Consensus 85 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------- 127 (349)
+|+...+. |- ..+...|.+....=.++..++.|.-+|+-.++.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 88887664 21 011222222222222333344443333222111
Q ss_pred --------CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHH--------HHHHhcCCHHHHHH
Q 018882 128 --------DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN--TFNILL--------DSYGKAGHFEKMSA 189 (349)
Q Consensus 128 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~~~~~~a~~ 189 (349)
.-+-|-.+|-..++.-...|+.+...++|++.+.+ ++|-.. .|.-.| -.-....+.+.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 01345567777777778889999999999998876 344211 121111 11135678888899
Q ss_pred HHHHHHhcCCCCchhhHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 190 VMEYMQKYHYSWTIVTYNI----VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
+++...+. ++....|+.- ......++.++..|..++.... |..|...+|...|..=.+.++++.+..+++...
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99888773 3334444443 3444457788999999998765 567888999999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 266 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+.++ .+..+|......-...|+.+.|..+|+-..+... ......|.+.|.--...|.++.|..+++.+.+..
T Consensus 465 e~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 465 EFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9875 4888999888888899999999999999988732 2234567777777788999999999998876654
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=8e-12 Score=97.76 Aligned_cols=201 Identities=13% Similarity=0.055 Sum_probs=124.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555566666666666666666665542 234555566666666666666666666666655422 44555666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERI-KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
+...|++++|...++....... +.....+..+...+...|++++|...+........ .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 6666777777777766654321 12234555566667777777777777777665432 245566667777777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 292 MKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 292 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
|...+++.... .+.+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777777665 2334555666666777777777777766665543
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=5.4e-11 Score=96.20 Aligned_cols=328 Identities=10% Similarity=0.042 Sum_probs=193.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCh
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDAN-TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAF 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 79 (349)
|-++|++++|++.+.+..+. .|+ +..|.....+|...|+++++.+.-.+..+. .|+ +..+..-.+++-..|++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHHhhccH
Confidence 45789999999999999987 477 888999999999999999999888877765 344 34455555666666666
Q ss_pred hHHHH----------------------HHHH---------HHhcC--CCCchHHHHHHHHHHhc----------------
Q 018882 80 DKVQA----------------------LLSD---------MSTQG--IRPNTVTYNTLIDAYGR---------------- 110 (349)
Q Consensus 80 ~~a~~----------------------~~~~---------~~~~~--~~~~~~~~~~l~~~~~~---------------- 110 (349)
++|+. ++.. +.+.+ +-|+.....+....+..
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 55431 1111 11011 22333322222222210
Q ss_pred -----------------------------------------------------------cCcHHHHHHHHHHHhccCCCc
Q 018882 111 -----------------------------------------------------------AKMFAEMELTLVKMLSEDCEP 131 (349)
Q Consensus 111 -----------------------------------------------------------~~~~~~a~~~~~~~~~~~~~~ 131 (349)
.|+.-.|..-|+..+.....
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~- 358 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA- 358 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-
Confidence 12222222222222222111
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 018882 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
+...|-.+..+|....+.++..+.|+...+.+ +-++.+|..-.....-.+++++|..-|++.....+. +...|-.+..
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~ 436 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCC 436 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHH
Confidence 11124445555666666666666666666554 224555555555555566667777666666665433 4555555666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-------chHHHHHHHHHHHH
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-------LDTVFFNCLVDAYG 284 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~ 284 (349)
+..+.+.++++...|++.... .+-.+..|+...+.+...++++.|.+.|+..++.... +.+.+--.++..-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 666777777777777777654 3445567777777777777888888777777654322 11111222222222
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+++..|..++....+.+.+ ....|..|...-.+.|+.++|+++|++-..+-++
T Consensus 516 -k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 516 -KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred -hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 26777777777777766432 3456777777788888888888888776555443
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.6e-11 Score=107.69 Aligned_cols=267 Identities=10% Similarity=0.041 Sum_probs=188.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh---------ccCcHHHHHHHHHHHh
Q 018882 60 QPDVNTYSILIKSCLK-----AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG---------RAKMFAEMELTLVKML 125 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 125 (349)
+.+...|...+.+... .+++++|...|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3555656665555322 234678999999998873 224556666655543 2345899999999999
Q ss_pred ccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhh
Q 018882 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT 205 (349)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 205 (349)
+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.++. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 4567778888888999999999999999999875 446778888999999999999999999999887644 3333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+..+..... .+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 3444555667899999999999987654223455577788888999999999999998765432 245556667777788
Q ss_pred cCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 286 LKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.| +.|...++.+.+. ...|....+ +-..+.-.|+.+.+... +.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 88 4777777776654 122322333 33344555666666655 55544
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=7.6e-13 Score=113.81 Aligned_cols=252 Identities=14% Similarity=0.078 Sum_probs=143.8
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.++-.+...|+.|+..+|.+++.-|+..|+++.|- +|.-|+-. ..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC---------
Confidence 45677888899999999999999999999999998 88888766 33677888999999988888887776
Q ss_pred CCCCchHHHHHHHHHHhccCcHHH---HHHHHHHHhc----cCCCcchhhHHHH--------------HHHHHccCCHHH
Q 018882 93 GIRPNTVTYNTLIDAYGRAKMFAE---MELTLVKMLS----EDCEPDVWTMNCT--------------LRAFGNSGQIDT 151 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~~~l--------------~~~~~~~~~~~~ 151 (349)
.|.+.+|..|..+|...|+... +.+.+..... .|+......+-.. +......|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6788999999999999998654 3332222211 1111111111000 111111122222
Q ss_pred HHHHHHHHHhcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 152 MEKCYEKFQSAGIQPSINTFNI---LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
+.+++..+ |...-++. +++-+... ..-..++........-.|++.+|..++..-...|+.+.|..++.+
T Consensus 158 llkll~~~------Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 158 LLKLLAKV------PVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHhhC------CcccccchHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 22222111 11111110 12221111 122222222222221135666666666666666666666666666
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
|.+.|.+.+..-|..++-+ .++..-+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6666666655555555433 55555556666666666666666666665555555443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=1.2e-11 Score=96.76 Aligned_cols=200 Identities=11% Similarity=0.049 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555555556666666666666555442 2234455555555566666666666666555443 2233445555555
Q ss_pred HHccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
+...|++++|.+.+.+..+... +.....+..+...+...|++++|...+++....... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 5666666666666666554321 112334455555666666666666666666554322 34555566666666666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
|...+++.... .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666666554 233445555555666666666666666555443
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=6.6e-13 Score=101.79 Aligned_cols=237 Identities=14% Similarity=-0.003 Sum_probs=195.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHH
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT 139 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (349)
..|-.--+.+.++|.+.|.+.+|.+.++...+. .|-+.||-.|-+.|.+..+...|+.++.+-.+.- +-++....-+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhhh
Confidence 344444567889999999999999999888776 5677889889999999999999999999887652 4455555667
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
.+.+...++.++|.++|+...+.. +.+......+...|.-.++++.|...++++.+.|.. ++..|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 788888999999999999988764 446777777778888899999999999999999977 888999998888899999
Q ss_pred HHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 220 KQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
+-++..|.+....-..|+ ..+|-.+....+..|++..|.+.|+....++. -+...+|.|...-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999988875433333 45788888888899999999999999887764 377889999988999999999999998
Q ss_pred HHHhc
Q 018882 298 VMQQR 302 (349)
Q Consensus 298 ~m~~~ 302 (349)
.....
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 88765
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1.2e-12 Score=100.45 Aligned_cols=240 Identities=9% Similarity=-0.037 Sum_probs=201.2
Q ss_pred CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018882 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (349)
..|-.--+.+.++|.+.|.+.+|.+.++..... .|-+.||..+-++|.+..++..|+.++.+-.+. .+-+.....-.
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence 334444467889999999999999999998877 567778999999999999999999999998876 34455555667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+.+...++.++|.++++...+.... ++.....+...|.-.++++.|..+++++.+.|+ .++..|+.+.-+|...+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 78888999999999999999887643 778888888889999999999999999999995 5778999999999999999
Q ss_pred hhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 255 EKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
+-++.-|.+....--.| -..+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 99999998876543323 3457878888889999999999999988877533 57889999888899999999999998
Q ss_pred HHHHHhhh
Q 018882 333 LVEKMDET 340 (349)
Q Consensus 333 ~~~~~~~~ 340 (349)
......+.
T Consensus 454 ~A~s~~P~ 461 (478)
T KOG1129|consen 454 AAKSVMPD 461 (478)
T ss_pred HhhhhCcc
Confidence 87766543
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.54 E-value=1.4e-10 Score=98.76 Aligned_cols=296 Identities=13% Similarity=0.079 Sum_probs=209.6
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc-
Q 018882 33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA- 111 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 111 (349)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 345677899999999999886654 23445556788899999999999999999999985 22444455555555222
Q ss_pred ----CcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 112 ----KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID-TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 112 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
...+....+|+++...- |.......+.-.+.....+. .+..++..+...|++ .+|+.+-..|.......-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 35677788888887653 44333333332233222332 355666777788865 356666666665555555
Q ss_pred HHHHHHHHHhc----C----------CCCch--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 187 MSAVMEYMQKY----H----------YSWTI--VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 187 a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
...++...... + -+|+. .++..+.+.|-..|++++|+++++..++.. +-.+..|..-.+.+-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 55565554322 1 12333 344666788889999999999999998864 3336788888899999
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HH--HHHHHHHHhcC
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV------TY--RTMVRAYSTNG 322 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~--~~l~~~~~~~g 322 (349)
.|++.+|...++........ |...-+..+..+.++|++++|.+++....+.+..|-.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988763 77777888999999999999999999888776543322 22 34456899999
Q ss_pred chhhhHHHHHHHHHHh
Q 018882 323 MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 323 ~~~~a~~~~~~~~~~~ 338 (349)
++..|.+.+..+.+.-
T Consensus 320 ~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 320 DYGLALKRFHAVLKHF 335 (517)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999887776653
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.54 E-value=8.5e-12 Score=104.83 Aligned_cols=252 Identities=18% Similarity=0.163 Sum_probs=187.2
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhcc-----C-CCcchhh-HHHHHHHHHccCCHHHHHHHHHHHHhc-----CC
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-----D-CEPDVWT-MNCTLRAFGNSGQIDTMEKCYEKFQSA-----GI 164 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 164 (349)
-..+...|...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677889999999999999999888765 2 1333333 344777899999999999999998753 21
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 018882 165 --QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY-----H-YSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--- 232 (349)
Q Consensus 165 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 232 (349)
+.-..+++.|..+|.+.|++++|...++...+. + ..|. ...++.+...+...++++.|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122456777888899999999998888766431 1 1122 234666777888999999999998876432
Q ss_pred CCC----CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----C---CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 233 RIK----PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----D---IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 233 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
-+. --..+++.+...|...|++++|..+++.+... + ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111 22467899999999999999999999887542 1 112345678899999999999999999887654
Q ss_pred c----CC-CCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhccCCCC
Q 018882 302 R----GC-KPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348 (349)
Q Consensus 302 ~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~p~ 348 (349)
. |. .|+ ..+|..|...|...|+++.|.++.+.+....+...+...|+
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 3 22 233 46799999999999999999999999998877666665554
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.52 E-value=4.7e-10 Score=98.07 Aligned_cols=242 Identities=12% Similarity=0.028 Sum_probs=126.4
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCC--cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE--PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (349)
|+...+.|.+.|...|++..+..+...+...... .-...|..+.++|-..|++++|...|.+..+.....-...+--+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 4555555666666666666666666655544211 11234555666666666666666666665544211112233445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG----DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
...+.+.|+.+.+...|+.+.+..+. +..+...|...|...+ ..+.|..++....+.. +.|...|..+...+-.
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 56666666666666666666555322 4555555555555443 2344455554444332 3445555555554433
Q ss_pred cCChhhHHHHHHHHh----hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC------CHHHHHHHHHH
Q 018882 251 AGKPEKLGSVLRFID----NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR---GCKP------DKVTYRTMVRA 317 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p------~~~~~~~l~~~ 317 (349)
+++..+..++..+. ..+..+.+...|.+...+...|.+..|...|+..... ...+ +..+-..+...
T Consensus 427 -~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 -TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred -cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 33333344443332 2333355666666777777777777777766666543 1111 22222334444
Q ss_pred HHhcCchhhhHHHHHHHHHHhhhh
Q 018882 318 YSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
+...++++.|.+.+..+.+-.+..
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchh
Confidence 555566666666666665544433
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-10 Score=96.13 Aligned_cols=288 Identities=11% Similarity=-0.024 Sum_probs=228.9
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
.++.....-.+-+...+++++..++++...+.. +++...+..-|.++...|+..+...+=.+|.+. .|-.+.+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 355556666677888999999999999998876 677777777788999999998888888888877 35578899999
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
...|.-.|...+|.+.|.+....+ +.=...|-.+...|+-.|..++|...+...-+.= +-...-+-.+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 999999999999999999987553 2224578888999999999999999988876641 11212223344457889999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCcHHHHHHHHHHHHhcCChhhHH
Q 018882 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE------RIKPSCVTLCSLVRAYGHAGKPEKLG 258 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (349)
+-|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... .......+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998876533 7888888887777889999999999887621 11124567899999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
..++....... -+..++.++.-.|...|+++.|.+.|.+.... .|+..+-..++..+...
T Consensus 476 ~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHHh
Confidence 99999887764 48899999999999999999999999988754 78887777777655443
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=6.2e-10 Score=93.43 Aligned_cols=327 Identities=9% Similarity=0.021 Sum_probs=264.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.|.+-.+..+.......|+.. --.+|..-.+.|.+.+.++-|..+|....+.. +-+...|......--..|..+.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHH
Confidence 4566777778888887776543 25688888999999999999999999998864 5567778888877777899999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
...+|++.... ++.....|......+-..|+...|..++.+..+.. +.+...|..-++.-..+.+++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 99999999887 45566778888888888999999999999999876 45788899999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
. .|+...|.--+....-.+..++|.+++++..+.- +.-...|-.+.+.+-+.++.+.|.+.|..-... ++-....|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 4 6788888888888888899999999999888763 335678888899999999999999988765433 35556778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--------------
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----G-------------- 303 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-------------- 303 (349)
..+...=-+.|.+-.|..+++...-.++. +...|-..|+.-.+.|..+.|..+..+..+. |
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 88888778889999999999999877754 8899999999999999999998776655432 1
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 304 -----------CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 304 -----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.-|+.....+...+.....++.|.+.|.+..+.++
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 234566666666777777778888887777665543
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.2e-10 Score=93.59 Aligned_cols=278 Identities=12% Similarity=0.047 Sum_probs=204.7
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHc-CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSA-YGR-SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 79 (349)
|.++|+++.|++++.-+.+.+-+.....-+.|-.. |.+ -.++..|.+.-+...... .-+......-.......|++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcH
Confidence 45788888888888877765433323333333322 222 346777777777666543 33444444444445567899
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
++|...+.+.....-.-....||. --.+-..|++++|+..|-++... +..+..+...+...|....+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999887633322333332 23456789999999999887643 2456777788889999999999999999887
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018882 160 QSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (349)
... ++.|+.+.+-|...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++++.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 765 5678999999999999999999999887654443 455888999999999999999999999998643 589999
Q ss_pred HHHHHHHHH-HhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 240 TLCSLVRAY-GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 240 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
-|..++..| .+.|++.+|..+++.+... ++-|......|++.+...|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 998887655 5789999999999998865 55688888888888877764
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=2.2e-13 Score=77.51 Aligned_cols=50 Identities=30% Similarity=0.549 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999988999999999999888864
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=2.9e-13 Score=77.06 Aligned_cols=50 Identities=40% Similarity=0.685 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 018882 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 61 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (349)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=4.6e-09 Score=85.14 Aligned_cols=322 Identities=11% Similarity=0.080 Sum_probs=184.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~ 83 (349)
++++..|..+|++.+... ..+...|-.-+.+=.++..+..|..+|+..... -|-+ ..|---+..--..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHH
Confidence 466778888888888764 456777777777777888888888888877764 3332 33444444444567778888
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA- 162 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 162 (349)
++|++-.+- .|+...|++.++.=.+.+.++.|..+|++..-- .|++.+|-...+.-.+.|+...+..+|....+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 888777664 677788888887777777788888888777643 577777777776667777777777777665543
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------------------------------hc
Q 018882 163 GI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQ--------------------------------------------KY 197 (349)
Q Consensus 163 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------------------------~~ 197 (349)
|- ..+...+.++...-.++..++.|.-+|+-.. +.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 10 0011122222222223333333333333222 22
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH--HHHHHH--------HHHHhcCChhhHHHHHHHHhhC
Q 018882 198 HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV--TLCSLV--------RAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+ +.|..+|--.+..-...|+.+...++|++.... ++|-.. .|...| -.=....+.+.+.++++...+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2 225566666676667777777777777777654 344211 111111 1112345666666666655542
Q ss_pred CCCchHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 268 DIMLDTVFFNCL----VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 268 ~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
++....+|..+ ...-.++.+...|.+++-..+ |..|-..+|...|..-.+.+.++....+++++.+.++
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 22222232222 222234455555555554443 3455555666666555555666666666655555444
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.5e-09 Score=88.07 Aligned_cols=303 Identities=11% Similarity=-0.013 Sum_probs=180.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLID 106 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 106 (349)
.+.....-|.++|.+++|++.|.+.... .|+ +..|.....+|...|+|+++.+.-.+..+. .|+ ...+..-.+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 3445666788999999999999999987 577 888999999999999999998877776665 333 223444445
Q ss_pred HHhccCcHHHHHH----------------------HHHH---------Hhcc--CCCcchhhHHHHHHHHHc--------
Q 018882 107 AYGRAKMFAEMEL----------------------TLVK---------MLSE--DCEPDVWTMNCTLRAFGN-------- 145 (349)
Q Consensus 107 ~~~~~~~~~~a~~----------------------~~~~---------~~~~--~~~~~~~~~~~l~~~~~~-------- 145 (349)
++-..|++++|+. ++.+ +... .+.|+.....+....+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 5555555555542 2211 1111 123444333333332210
Q ss_pred cC--------------------CHHHHHHHHHHHHh---cCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 146 SG--------------------QIDTMEKCYEKFQS---AGIQPS---------INTFNILLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 146 ~~--------------------~~~~a~~~~~~~~~---~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (349)
.+ .+..+...+.+-.. .....+ ..+...-...+.-.|+.-.|..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 00 11112111111100 001111 22222223334456777777777777
Q ss_pred HHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH
Q 018882 194 MQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT 273 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (349)
..+....+ ...|--+...|....+.++.+..|+.....+ +-++.+|..-.+...-.+++++|..-|+..+...+ -+.
T Consensus 352 ~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~ 428 (606)
T KOG0547|consen 352 AIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENA 428 (606)
T ss_pred HHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhh
Confidence 77665442 2236666666777777777777777776554 34556666666666666777777777777766543 255
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
..|-.+..+..+.+++++++..|++.+.. ++--+..|+.....+..+++++.|.+.++...++.+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 56666666666777777777777777665 3334566777777777777777777777777666554
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=1.4e-09 Score=79.80 Aligned_cols=200 Identities=15% Similarity=0.012 Sum_probs=125.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...+.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+..+. +-...|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3344555666777777777777766654 335556666666677777777777777766665433 55666666666677
Q ss_pred cCChHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 216 AGDLKQMEYLFRLMRSERI-KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.|++++|...|++...... .--..+|..+.-+..+.|+.+.|...+++..+.... .+...-.+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 7777777777766655421 112356666666666777777777777766665432 34445556666667777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 295 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.++.....+. ++..+....|+.-...|+.+.+.++-..+.+.-+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 7766666544 5666666666666666777666666665555443
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=5.5e-10 Score=94.14 Aligned_cols=238 Identities=15% Similarity=0.103 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CCchH-HHHHHHHHHhccCcHHHHHHHHHHHhcc-----C--
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQ-----GI-RPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSE-----D-- 128 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 128 (349)
..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777788888888888777776554 21 22333 2334667778888888888888877643 1
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA-----GI-QPS-INTFNILLDSYGKAGHFEKMSAVMEYMQKY---H 198 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 198 (349)
.+.-..+++.|...|.+.|++++|...++...+. |. .|. ...++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223456777777888888888877777665432 11 122 233566777788888899888888765432 1
Q ss_pred CCC----chhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-
Q 018882 199 YSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN- 266 (349)
Q Consensus 199 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 266 (349)
+.+ -..+++.+...|...|++++|.++++.+... + ..-....++.+...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 122 2467888999999999999999998887542 1 122245677888888888888888888876432
Q ss_pred ---CCC--CchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 267 ---SDI--MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 267 ---~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
.|+ +-...+|..|...|.+.|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 2235678889999999999999998887765
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=2.3e-09 Score=86.39 Aligned_cols=222 Identities=10% Similarity=-0.013 Sum_probs=115.8
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPD--VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
..+..+.++.-+.++.......|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 334555666666655543222222 2345555566666677777776666666653 2345666666666677777777
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
|...|++..+.. +-+..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.....
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777776666543 2234455556666666677777777776666543 2221111122223345566677766655433
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CC---CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018882 197 YHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RI---KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
.. .|+...+ .+. ....|+...+ ..+..+.+. .+ +.....|..+...+...|++++|...|+...+.++
T Consensus 194 ~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 21 1221111 111 2223444333 233333211 00 11234566677777777777777777777766553
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.1e-09 Score=88.70 Aligned_cols=272 Identities=8% Similarity=-0.022 Sum_probs=215.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..+++.+..++++.+.+.. +++...+..-|.++...|+..+-..+=.++.+.. |....+|-.+.-.|...|+..+|.
T Consensus 256 ~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHH
Confidence 4678999999999998874 7788888888889999999888888888888764 566788999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
+.|.+...... .=...|-.....|+-.+..++|...+....+-- +-...-+-.+.--|.+.++.+.|.++|.+.....
T Consensus 333 ry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 333 RYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 99998766531 134578888999999999999999988776541 1111122334455788999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC----CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY--HYS----WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (349)
+.|+...+.+.-.....+.+.+|...|+..... ... .-..+++.|..++.+.+.+++|+..++...... +.+
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 557888888887788889999999999877621 111 134568899999999999999999999988765 678
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
..++.++.-.+...|+++.|.+.|.+.... .|+-.+...++..+.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 899999999999999999999999988764 567666666665443
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=6.3e-09 Score=83.91 Aligned_cols=227 Identities=9% Similarity=-0.044 Sum_probs=160.5
Q ss_pred CChhHHHHHHHHHHhcC-CCCc--hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018882 77 FAFDKVQALLSDMSTQG-IRPN--TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
+..+.+..-+.+++... ..|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777777542 1222 4567778888999999999999999998775 456788999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..|++..+.. +-+..++..+..++...|++++|.+.++...+..+. ..............+++++|...+.......
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999998864 335677888888899999999999999999876533 2222222223445678999999997755432
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh---CCCC---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN---SDIM---LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
.|+...+ . ......|+...+ ..+..+.+ ..+. .....|..+...+.+.|++++|...|++....++ ||
T Consensus 196 -~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~ 269 (296)
T PRK11189 196 -DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN 269 (296)
T ss_pred -CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence 3332222 2 233345666554 34444442 1111 1346899999999999999999999999998753 35
Q ss_pred HHHHHH
Q 018882 308 KVTYRT 313 (349)
Q Consensus 308 ~~~~~~ 313 (349)
..-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 555444
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.2e-08 Score=81.38 Aligned_cols=291 Identities=9% Similarity=-0.024 Sum_probs=179.1
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 118 (349)
.++...|...+--+......+-|......+..++...|+.++|...|++.... .|+ ........-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444444333333344566777778888888888888888888877654 222 222222333445667777777
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
.+...+.... .-....|..-.......++++.|+.+-++.++.. +.+...+-.-.+.+...+++++|.-.|+..+...
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 6666665432 2333344444445556677778887777777653 2344555555566777888888888888777654
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH-HHH-HhcCChhhHHHHHHHHhhCCCCchHHHH
Q 018882 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV-RAY-GHAGKPEKLGSVLRFIDNSDIMLDTVFF 276 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (349)
+ -+...|.-|+..|...|.+.+|...-+..... .+.+..+.+.+. ..| .....-++|.++++......+ .-....
T Consensus 365 p-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P-~Y~~AV 441 (564)
T KOG1174|consen 365 P-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP-IYTPAV 441 (564)
T ss_pred h-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC-ccHHHH
Confidence 2 26778888888888888888877666554332 123344444331 122 122234567777776655432 123455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 277 NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.+...+...|..+.+..+++..... .||....+.|.+.+...+.+.+|.+.+....++++
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 66677777777778888877776654 56777777777777777777777777766655544
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.34 E-value=7.6e-08 Score=80.48 Aligned_cols=308 Identities=12% Similarity=-0.007 Sum_probs=186.7
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH--
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN-TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-- 103 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 103 (349)
...|..+...+...|+.+.+.+.+..........++.. ........+...|++++|.+++++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 45566677777777888887777766654422122322 22223445667899999999999988763 334444442
Q ss_pred -HHHHHhccCcHHHHHHHHHHHhccCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 104 -LIDAYGRAKMFAEMELTLVKMLSEDCEPD-VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 104 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
+.......+....+.+.+.... ...|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1222222455555555555421 22233 3344455667889999999999999998875 44667788888899999
Q ss_pred CCHHHHHHHHHHHHhcCCC-Cc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCcHHHH-H--HHHHHHHhcCCh
Q 018882 182 GHFEKMSAVMEYMQKYHYS-WT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-KPSCVTL-C--SLVRAYGHAGKP 254 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~ 254 (349)
|++++|...+++....... |+ ...|..+...+...|++++|..+++....... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999988765422 22 23455678888999999999999999864332 1222111 1 233334444544
Q ss_pred hhHHHH--H-HHHhhCCC-CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCHHHHHHHH--HHHHhcC
Q 018882 255 EKLGSV--L-RFIDNSDI-MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK------PDKVTYRTMV--RAYSTNG 322 (349)
Q Consensus 255 ~~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~l~--~~~~~~g 322 (349)
+.+.+. + ........ ............++...|+.+.|..+++.+...... ....+-..++ .++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333333 1 21111100 111222235677788899999999999988764221 0111222233 3467889
Q ss_pred chhhhHHHHHHHHHHh
Q 018882 323 MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 323 ~~~~a~~~~~~~~~~~ 338 (349)
+++.|.+.+.......
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999887765543
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=7.1e-09 Score=76.18 Aligned_cols=198 Identities=16% Similarity=0.018 Sum_probs=126.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 101 YNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180 (349)
Q Consensus 101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (349)
...|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445556667777777777777776664 4455666666677777777777777777766653 3355666666666777
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 181 AGHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
.|++++|...|+...... ..-...+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 777777777776665432 22234566666666667777777777777766554 2333455566666667777777777
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.++.....+. ++..+.-..|+.-...|+.+.+-+.=..+.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7776666554 56666666666666677766666655555543
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=5.3e-08 Score=83.60 Aligned_cols=333 Identities=13% Similarity=0.063 Sum_probs=193.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCChhHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK-AFAFDKV 82 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 82 (349)
.+|+++.+.+.|++.... .......|+.+...+...|.-..|..+.+.-.....-+++...+-..-..|.+ .+..+++
T Consensus 335 ~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 456666666666665543 22344556666666666666666666666554432212333333333333333 3445555
Q ss_pred HHHHHHHHhc--CC--CCchHHHHHHHHHHhcc-----------CcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC
Q 018882 83 QALLSDMSTQ--GI--RPNTVTYNTLIDAYGRA-----------KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG 147 (349)
Q Consensus 83 ~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (349)
+.+-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +.|......+.--|+..+
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence 4444444331 10 11222233333333211 11334455555554443 222222223333445556
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC---------------------------
Q 018882 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY-HY--------------------------- 199 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--------------------------- 199 (349)
+++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... +.
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 66666666666666544556666666666665566655555554432210 00
Q ss_pred ------------------------------------------------------------------C--Cc------hhh
Q 018882 200 ------------------------------------------------------------------S--WT------IVT 205 (349)
Q Consensus 200 ------------------------------------------------------------------~--~~------~~~ 205 (349)
. |+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 0 00 112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
|......+.+.++.++|...+.+..... +.....|......+...|..++|.+.|......++ -++....++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344455556666666666666654332 34445566666677778888899998888877654 366788899999999
Q ss_pred cCCHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 286 LKCFAEMKG--VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 286 ~g~~~~a~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
.|+..-|.. ++.++.+.+.. ++..|..+...+.+.|+.+.|.+.|+-..++.++.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 998888877 99999988744 89999999999999999999999999999888753
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.2e-08 Score=79.85 Aligned_cols=271 Identities=9% Similarity=-0.005 Sum_probs=205.2
Q ss_pred CCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHH
Q 018882 23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
++-|+.....+..++...|+.++|+..|++.... .|+. .....-.-.+.+.|+.+....+...+.... .-+...|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 4567888999999999999999999999998866 3433 233333334567888998888888887652 2345555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 102 NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
-.-.......++++.|+.+-++.++.. +.+...+-.-...+...++.++|.-.|....... +-+...|.-|+..|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 555566667789999999999988765 4445555555567788999999999999887753 45789999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHH-HHHH-hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVI-DAFG-RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
|++.+|..+-+...+. ++.+..+...+. ..+. ....-++|..+++...... +.-....+.+...|...|..+.++.
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHH
Confidence 9999998877665443 223566666553 2222 2334578899988876543 2334667788889999999999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
+++..... .||....+.|...+...+.+++|++.|....+.+
T Consensus 460 LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99988764 4799999999999999999999999999888774
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=7.7e-08 Score=80.43 Aligned_cols=291 Identities=13% Similarity=0.047 Sum_probs=178.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cC
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQ---SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AF 77 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 77 (349)
.|+.+.+.+.+....+.. +++.. ........+...|++++|.+.+++..... |.+...+.. ...+.. .+
T Consensus 19 ~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~ 94 (355)
T cd05804 19 GGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSG 94 (355)
T ss_pred cCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhccccc
Confidence 466777777776665542 22222 22233445678899999999999988763 344444442 222222 34
Q ss_pred ChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 95 ~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 95 MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45555555544 1122233 3444556678889999999999999999875 455677888889999999999999999
Q ss_pred HHHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCchhhH-H--HHHHHHHhcCChHHHHHH--HH
Q 018882 157 EKFQSAGI-QPSI--NTFNILLDSYGKAGHFEKMSAVMEYMQKYHY-SWTIVTY-N--IVIDAFGRAGDLKQMEYL--FR 227 (349)
Q Consensus 157 ~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~ 227 (349)
++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+... +.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~ 251 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLA 251 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99877532 1232 3455788889999999999999999864432 1112111 1 223333344433332222 21
Q ss_pred HHHhCCC--CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC------c--hHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 228 LMRSERI--KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM------L--DTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 228 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
....... ............++...|+.+.|..+++.+...... . .....-....++...|++++|.+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 252 DYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111110 111222235677788999999999999887653211 0 11222233344668999999999998
Q ss_pred HHHhc
Q 018882 298 VMQQR 302 (349)
Q Consensus 298 ~m~~~ 302 (349)
.....
T Consensus 332 ~al~~ 336 (355)
T cd05804 332 PVRDD 336 (355)
T ss_pred HHHHH
Confidence 87754
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=3e-07 Score=77.67 Aligned_cols=192 Identities=10% Similarity=0.032 Sum_probs=109.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+...|+-++|.+....-...+ ..+.+.|+.+.-.+....++++|++.|......+ +.|...+.-+.-.-++.++++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhh
Confidence 345677777777776666543 4566778887777777788888888888877664 5566666666555566667666
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC-CCcchhhHHHHH------HHHHccCCHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTL------RAFGNSGQIDTMEK 154 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~ 154 (349)
......++.+.. +-....|.....++.-.|+...|..+++...+.. ..|+...+.... ......|..+.|.+
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 666666665542 2234455666666666777777777777666543 234443333222 12234444455544
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 155 CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
.+..-... +......-.+-...+.+.+++++|..++..+...+
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 44332221 11111112223344455566666666666665543
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=1.9e-08 Score=78.67 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=71.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHh
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF-NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR-TMVRAYST 320 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~ 320 (349)
.+.++.+..|++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|+.++-.+.. +.+..+.. .+..-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 4667778889999999999888776665 44555 5567889999999999777644432 22444433 44456888
Q ss_pred cCchhhhHHHHHHHHHHhhhhhcc
Q 018882 321 NGMKNHAKEFQDLVEKMDETCLAM 344 (349)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~ 344 (349)
.+.+=-|.+.|+.++.+++++.-.
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHHHHhhhHHHccCCCcccc
Confidence 899989999999999999876543
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.24 E-value=5.4e-09 Score=83.13 Aligned_cols=251 Identities=12% Similarity=0.076 Sum_probs=144.3
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
+-+.-.|++..++.-.+ .....+ ..+......+.+++...|+.+.+. .++.... .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 33445677777776555 322211 222334455667777777766443 3333332 55666665555555443455
Q ss_pred HHHHHHHHHHhccCCC-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCE-PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (349)
+.+..-+++....... .+.........++...|++++|+++++.. .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555444322 23333333334566677888777766542 3556666777778888888888888888
Q ss_pred HHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018882 194 MQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++......+.
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 77653 23334444444432 23577888888886543 456777777777778888888888888877766554
Q ss_pred CchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 018882 270 MLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQR 302 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 302 (349)
. ++.+...++.+....|+. +.+.+.+.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3 566666677776777766 5566777777655
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.24 E-value=1.3e-09 Score=86.62 Aligned_cols=253 Identities=8% Similarity=0.050 Sum_probs=167.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886665 222222223445566778999999877644 4444333 666666655555554445555
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 151 TMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.+..-++........+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554444333232 3333333335566789999999888643 36777788899999999999999999999
Q ss_pred HhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018882 230 RSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305 (349)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 305 (349)
.+.. +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++....+..
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8653 33455556665543 33689999999998775 4578899999999999999999999999998876533
Q ss_pred CCHHHHHHHHHHHHhcCch-hhhHHHHHHHHHHhh
Q 018882 306 PDKVTYRTMVRAYSTNGMK-NHAKEFQDLVEKMDE 339 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 339 (349)
++.+...++.+....|+. +.+.+++..+.+..+
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 677888888888888887 667778777766544
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=8.9e-10 Score=95.49 Aligned_cols=259 Identities=15% Similarity=0.165 Sum_probs=183.2
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 49 LLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
++-.+... |+.|+-.+|..++..|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34444444 77999999999999999999999998 9999988888889999999999998888877664
Q ss_pred CCcchhhHHHHHHHHHccCCHHH---HHHHHHHH----HhcCCCCCHHHH--------------HHHHHHHHhcCCHHHH
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDT---MEKCYEKF----QSAGIQPSINTF--------------NILLDSYGKAGHFEKM 187 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a 187 (349)
.|...+|+.+..+|...||... +.+.+..+ ...|+......+ ...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999765 22222222 222322111111 1122223334445555
Q ss_pred HHHHHHHHhcCC-CCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 188 SAVMEYMQKYHY-SWTIVTYNIVIDAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 188 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.+++..+..... .|... +++-+.... .+++...+.+...+ .|+..+|..++.+-..+|+.+.|..++.+|.
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 555544432211 11111 233332222 23333333333332 5899999999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 266 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
+.|++.+.+.|..|+.+ .++...+..++.-|...|+.|+..|+.-.+-.+..+|....+.+.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc
Confidence 99999999888888766 888889999999999999999999999888888887765554443
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1e-06 Score=73.80 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=39.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEH 52 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 52 (349)
+.+.|++++|++..+++...+ +-+...+..-+-++.+.+.+++|+.+.+.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk 71 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK 71 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh
Confidence 467889999999999998875 55566777777778888888888866544
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=1.3e-06 Score=74.01 Aligned_cols=327 Identities=13% Similarity=0.123 Sum_probs=224.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.+++...+.+.+.+.+. .+-...+.....-.+...|+-++|....+.....+ ..+.++|..+.-.+-...++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHH
Confidence 45666777777777763 44556666666666778899999999998877653 5677889988888888899999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG- 163 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 163 (349)
.|......+ +-|...+.-+.-.-++.++++.......+..+.. +.....|..+..++.-.|++..|..+++...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999875 4477888888777788888888888777777653 3445678888888899999999999999988765
Q ss_pred CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018882 164 IQPSINTFNILL------DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237 (349)
Q Consensus 164 ~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (349)
..|+...+.-.. ....+.|..+.|.+.+......-+. ....-..-...+.+.+++++|..++..+... .||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 246666654433 3345678888888777665443211 2223334455677888899999998888765 355
Q ss_pred HHHHHHHH-HHHHh-cCChhhHHHHHH----------------------------------HHhhCCC------------
Q 018882 238 CVTLCSLV-RAYGH-AGKPEKLGSVLR----------------------------------FIDNSDI------------ 269 (349)
Q Consensus 238 ~~~~~~l~-~~~~~-~~~~~~a~~~~~----------------------------------~~~~~~~------------ 269 (349)
..-|.... .++.+ .+..+....++. ...+.|+
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 44443322 22211 111111101111 1111111
Q ss_pred ----------------------------------CchHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHH
Q 018882 270 ----------------------------------MLDTVFF--NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK-VTYR 312 (349)
Q Consensus 270 ----------------------------------~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~ 312 (349)
+|.+..| ..++..|-+.|+++.|..+++...+. .|+. ..|.
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~ 409 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYL 409 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHH
Confidence 2334433 45677888899999999999988876 5553 4455
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 313 TMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
.=.+.+...|+.+.|..+++...+++..-
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 55678899999999999999988887543
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.6e-07 Score=72.00 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=161.4
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHhcCChhHHHH
Q 018882 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI-LIKSCLKAFAFDKVQA 84 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~ 84 (349)
.+++.|++++..-.++. +.+......|..+|....++..|-+.++++... .|...-|.. -...+.+.+.+..|+.
T Consensus 24 ~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred hhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34445555555444442 224445555555555555555555555555543 344333332 2334445555555555
Q ss_pred HHHHHHhcCCCCchHHHHHHHHH--HhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
+...|... |+...-..-+.+ ....+++..+..++++....+ +..+.+...-...+.|+++.|.+-|+...+-
T Consensus 100 V~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 100 VAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 55554432 111111111111 123345555555555443222 2333333334456889999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------c---------------hhhHHHHHHHHH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-------------T---------------IVTYNIVIDAFG 214 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~l~~~~~ 214 (349)
+--.....|+..+ ++.+.++.+.|.+...++.++|++. | +..+|.-...+.
T Consensus 174 sGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 174 SGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred cCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 5444566777555 4557789999999998888776531 1 123444444456
Q ss_pred hcCChHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSE-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
+.++++.|.+.+-+|.-+ ....|+.|...+.-.- ..+++....+-+..+...++ ....+|..++-.||+..-++.|.
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHH
Confidence 788899999888888532 2345667776654322 23456666666666666655 35678888888999999999998
Q ss_pred HHHHHH
Q 018882 294 GVLEVM 299 (349)
Q Consensus 294 ~~~~~m 299 (349)
.++.+-
T Consensus 331 DvLAEn 336 (459)
T KOG4340|consen 331 DVLAEN 336 (459)
T ss_pred HHHhhC
Confidence 887653
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=9.6e-07 Score=83.33 Aligned_cols=334 Identities=10% Similarity=0.003 Sum_probs=202.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-----CCCH--HHHHHHHHHHHhcC
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-----QPDV--NTYSILIKSCLKAF 77 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~ll~~~~~~~ 77 (349)
.|+++.+...++.+.......++.........+...|+++++...+......... .+.. .....+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 4555555555555421111112223334455566788999998888876542110 1111 12222334556789
Q ss_pred ChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhccCC---Cc--chhhHHHHHHHHHccCC
Q 018882 78 AFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC---EP--DVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~ 148 (349)
+++.|...+++....-...+ ....+.+...+...|++++|...+.+...... .+ ....+..+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 99999999988766311112 12345566667788999999998888764311 11 12344556677888999
Q ss_pred HHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchhhHHHHHHHHHhcC
Q 018882 149 IDTMEKCYEKFQSA----GIQ--P-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 149 ~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~ 217 (349)
++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...+...|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 99999988876542 211 1 2233445566677789999999988876542 11112344555666778899
Q ss_pred ChHHHHHHHHHHHhC--CCCCcHH--HH--HHHHHHHHhcCChhhHHHHHHHHhhCCCCch---HHHHHHHHHHHHhcCC
Q 018882 218 DLKQMEYLFRLMRSE--RIKPSCV--TL--CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD---TVFFNCLVDAYGRLKC 288 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 288 (349)
+++.|...+...... ....... .. ...+..+...|+.+.|...+........... ...+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 999999988877532 1111110 10 1122344557888888888776554221111 1123456777888999
Q ss_pred HHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 289 FAEMKGVLEVMQQR----GCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 289 ~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+....++.
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999998887654 33222 3456667778899999999988888776654
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.6e-08 Score=81.95 Aligned_cols=253 Identities=10% Similarity=0.029 Sum_probs=158.7
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
.-+.+.|++.+|.-.|+...+.. |.+...|..|.......++-..|+..+.+..+.. +-|......|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34567777777777777776653 5567777777777777777777777777777663 33566666777777777777
Q ss_pred HHHHHHHHHHhccCCC--------cchhhHHHHHHHHHccCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018882 115 AEMELTLVKMLSEDCE--------PDVWTMNCTLRAFGNSGQIDTMEKCYEK-FQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
.+|++.++..+....+ ++...-.. +.+..........++|-+ ....+..+|..+...|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 7777777766543210 00000000 111222223333333333 344444467777777777777788888
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
+|.+.|+......+. |...||.|...++...+..+|+..|++.++. .|+ +.+...|.-+|...|.+++|...|-.+
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 888888887776544 7778888888888888888888888887764 333 344455666777888888877766554
Q ss_pred hhC---------CCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 265 DNS---------DIMLDTVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 265 ~~~---------~~~~~~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
+.. ...++..+|..|=.++...++.+.+..+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 321 1223456777776677777776655444
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=2.6e-06 Score=72.18 Aligned_cols=199 Identities=11% Similarity=0.110 Sum_probs=114.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS----------- 200 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 200 (349)
.|..+.+.|-..|+++.|..+|++..+-..+-- ..+|.....+-.+..+++.|.++++......-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 456666777777777777777777766543221 334444455555566677777766655322111
Q ss_pred ------CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-H
Q 018882 201 ------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-T 273 (349)
Q Consensus 201 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 273 (349)
-+...|...++..-..|-++....+++.+.+..+ .++........-+-...-++++.+++++-+..-..|+ .
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1234566666666666777777777777776654 2333333333334445556677777766554422233 3
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHhcCchhhhHHHHHHHH
Q 018882 274 VFFNCLVDAYGR---LKCFAEMKGVLEVMQQRGCKPDKVTYRTMV--RAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 274 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~ 335 (349)
..|+..+..+.+ ....+.|..+|++..+ |++|...-+-.|+ ..=.+.|....|..++++..
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466666655554 2367889999999988 6666543222222 22244577777777777643
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=8.1e-08 Score=73.53 Aligned_cols=294 Identities=14% Similarity=0.079 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH-HHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-LID 106 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 106 (349)
.-+.+.+..+.+..++++|++++..-.+.. +.+....+.+..+|....++..|...++++-.. .|...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 346777788888999999999998887763 347788899999999999999999999999876 456555544 245
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+.+.+.+.+|+++...|.+.. ..-......-.......+++..+..++++....| +..+.+.......+.|+++.
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6678899999999999887541 1111122222223346788888888888766433 44455555556678999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-------------CcHH--------HHHHHH
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-------------PSCV--------TLCSLV 245 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l~ 245 (349)
|.+-|....+.+--.....|+..+..| +.++++.|++...+++++|++ ||.. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999887654333567788766554 678999999999999887643 1211 112333
Q ss_pred HH-------HHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 246 RA-------YGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317 (349)
Q Consensus 246 ~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 317 (349)
++ +.+.++++.|.+.+..|.-. ....|+.+...+.-.- ..+++.+..+-+.-+...+.- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 33 45678888888888777532 2334666665543222 234455555556666665443 47889999999
Q ss_pred HHhcCchhhhHHHHH
Q 018882 318 YSTNGMKNHAKEFQD 332 (349)
Q Consensus 318 ~~~~g~~~~a~~~~~ 332 (349)
|+++.-++.|..++.
T Consensus 320 yCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLA 334 (459)
T ss_pred HhhhHHHhHHHHHHh
Confidence 999988888877653
No 89
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=7.4e-08 Score=82.28 Aligned_cols=225 Identities=11% Similarity=-0.008 Sum_probs=172.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
.-..+...+...|-..+|..++++.. .|..++.+|...|+..+|..+..+..+. +|+...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456677788888889988888764 4667888899999999999998888773 788888988888877
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|..+.-+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765432 11112222234688888888888776654 4556788888888888899999988
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.|.......+ -+...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+......|.+++|.+++..+..+..
T Consensus 541 aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 541 AFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 8888876543 3677899999999999999999999999888873 3666777777788888999999999998888877
Q ss_pred hhhccC
Q 018882 340 TCLAMK 345 (349)
Q Consensus 340 ~~~~~~ 345 (349)
.....+
T Consensus 619 ~~~d~~ 624 (777)
T KOG1128|consen 619 KYKDDE 624 (777)
T ss_pred hcccch
Confidence 655433
No 90
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=7.5e-07 Score=72.01 Aligned_cols=215 Identities=9% Similarity=-0.063 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC-cHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
++..+-..+...+..++|+.+..++++.. +-+..+|+..-.++...| .+++++..++++.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 34444455556677788888888877753 224445555555555555 5677888777777664 33444565554445
Q ss_pred HccCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc---CC
Q 018882 144 GNSGQI--DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA---GD 218 (349)
Q Consensus 144 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 218 (349)
.+.|.. +++..+++++.+.. +-+..+|+.....+...|+++++++.++++.+.++. +...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 555542 55677777777664 336777777777777777777777777777776654 566666665554443 22
Q ss_pred h----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc----CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 219 L----KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA----GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 219 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
. ++...+...++... +-|...|+.+...+... ++..+|..++......++ .+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 2 34455554554443 34555666665555552 233446566655554432 245555556666554
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.6e-06 Score=69.19 Aligned_cols=328 Identities=14% Similarity=0.092 Sum_probs=209.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 81 (349)
...|+++.|+..|-...... ++|...|..-..+|...|++++|++=-.+..+. .|+ ...|+....++.-.|++++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred cccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHHH
Confidence 56899999999999998875 568888999999999999999999887777765 455 4678999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccC-------------------------------------------------
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAK------------------------------------------------- 112 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------------------------- 112 (349)
|..-|.+-++.. +-|...+..+..++....
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999998877763 334455555555541110
Q ss_pred --cHHHHHHHHHHH-----hccC-------CCc----------------------chhhHHHHHHHHHccCCHHHHHHHH
Q 018882 113 --MFAEMELTLVKM-----LSED-------CEP----------------------DVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 113 --~~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
++..+.-.+... ...+ ..| -..-...+.++..+..++..+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 001111110000 0000 011 0111334455556666777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH-------HHHHHhcCChHHHHHHHHHH
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV-------IDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~ 229 (349)
....+.. -+..-++....+|...|....+...-....+.|.. ...-|+.+ ..++.+.++++.+...|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 7776654 35555666667777777777766666555554432 22223333 33455566777788777776
Q ss_pred HhCCCCCcHHHH-------------------------HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 230 RSERIKPSCVTL-------------------------CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 230 ~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
......|+...= ..-...+.+.|++..|...+.++++..+ -|...|....-+|.
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYL 403 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHH
Confidence 554333332211 1113345677888888888888887763 47888888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+.|.+..|++=.+..++.+ ++....|..=..++....+++.|.+.++...+.+++
T Consensus 404 kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 8888888887777666652 223444555555566666777777777776666543
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.02 E-value=6.5e-07 Score=81.99 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT 103 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (349)
...|-.-|..+.+.++++.|.+++++....-+.... ...|.++++.-..-|.-+...++|+++.+.- -.-..|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 444555555555555555555555555443211111 1223333333333344444555555554431 11233444
Q ss_pred HHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcC
Q 018882 104 LIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKAG 182 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 182 (349)
|...|.+.+.+++|.++++.|.+.- ......|...+..+.+.++-+.|..++.+..+.-.+ -......-.+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 5555555555555555555555432 133344455555555555555555555554443100 01222333333334455
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018882 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235 (349)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (349)
+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|++....++.
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 555555555554443322 3445555555555555555555555555544433
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.8e-07 Score=77.85 Aligned_cols=254 Identities=10% Similarity=0.005 Sum_probs=188.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
.-+.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34568899999999999998874 4478899999999999999999999999998765 455677788888899999999
Q ss_pred HHHHHHHHHHhcCC------C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCCchhhHHHHHHHHHhcCChHH
Q 018882 151 TMEKCYEKFQSAGI------Q--PSINTFNILLDSYGKAGHFEKMSAVMEYM-QKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 151 ~a~~~~~~~~~~~~------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
.|.+.++..+.... . ++...-.. ..+.....+....++|-++ ...+..+|+.....|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999988754321 0 01110000 1222222334445555444 445545788888999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
|.+.|+.++... +-|..+|+.|...++...+.++|+..|.++.+..+. =+++...|.-.|+..|.+++|.+.|-..+.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999998765 567789999999999999999999999999986533 244555688889999999999988766543
Q ss_pred c---------CCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 302 R---------GCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 302 ~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
. +..++...|..|=.++.-.++.|.+.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2 1223457788777778888877755554
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.02 E-value=9.4e-06 Score=69.01 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=80.7
Q ss_pred CCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 4 KCKQPEKAHELFQAMVDE-GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
++|++......|++.+.. -+......|...+......+-++.++.++++..+. .| ..-+--+..+++.+++++|
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P--~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---AP--EAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccchHHH
Confidence 445555555555554433 22223445555555555555555666666655543 12 2244445555566666666
Q ss_pred HHHHHHHHhcC------CCCchHHHHHHHHHHhccCcHH---HHHHHHHHHhccCCCcc--hhhHHHHHHHHHccCCHHH
Q 018882 83 QALLSDMSTQG------IRPNTVTYNTLIDAYGRAKMFA---EMELTLVKMLSEDCEPD--VWTMNCTLRAFGNSGQIDT 151 (349)
Q Consensus 83 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 151 (349)
.+.+....... .+.+-..|..+-+...+.-+.- ....+++.+... -+| ...|+.|..-|.+.|.+++
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHH
Confidence 66555554321 1223344444444444332211 122233333322 233 3568888999999999999
Q ss_pred HHHHHHHHHhc
Q 018882 152 MEKCYEKFQSA 162 (349)
Q Consensus 152 a~~~~~~~~~~ 162 (349)
|..+|++....
T Consensus 267 arDvyeeai~~ 277 (835)
T KOG2047|consen 267 ARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHh
Confidence 99999887754
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.00 E-value=1.4e-06 Score=80.01 Aligned_cols=249 Identities=10% Similarity=0.064 Sum_probs=190.6
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc-CCC---cchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-DCE---PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|+++.... +-+...|-..|......++.+.|.++.++.... ++. --...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444432 335667888898999999999999999998753 111 1224577777777777888889999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CcHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PSCVT 240 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 240 (349)
.- -....|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-++|..++.+..+.-.+ -....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 62 2456788999999999999999999999986532 47889999999999999999999999988764211 12344
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHH
Q 018882 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK--VTYRTMVRAY 318 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~ 318 (349)
....+..-.+.|+.+.+..+|+......++ -...|+.+|..-.++|+.+.++.+|++....++.|-. ..|...+..-
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 455556667889999999999998876543 6789999999999999999999999999999887753 4566666666
Q ss_pred HhcCchhhhHHHHHHHHHHhh
Q 018882 319 STNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~ 339 (349)
...|+-+.++.+-.+..+.-+
T Consensus 1682 k~~Gde~~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVKARAKEYVE 1702 (1710)
T ss_pred HhcCchhhHHHHHHHHHHHHH
Confidence 667877766666555555443
No 96
>PLN02789 farnesyltranstransferase
Probab=98.99 E-value=2.4e-06 Score=69.11 Aligned_cols=215 Identities=7% Similarity=-0.009 Sum_probs=153.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
++..+-..+...++.++|+.+..++.... +-+..+|+....++...+ ++++++..++++.+... .+..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence 44555566677789999999999998863 445567777767777777 67899999999988743 365667755555
Q ss_pred HhccCc--HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---C
Q 018882 108 YGRAKM--FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA---G 182 (349)
Q Consensus 108 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 182 (349)
+.+.|. .++++.+++++.+.. +-+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 555555 367788888888765 567788888888888999999999999999988644 666776666555544 2
Q ss_pred CH----HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 183 HF----EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA----GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 183 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
.. ++......++....+. +...|+.+...+... +...+|...+.+....+ +.+...+..|+..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 4566666677666544 788888888887763 34456777777766544 4456677777777764
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=6.1e-06 Score=64.83 Aligned_cols=305 Identities=11% Similarity=0.019 Sum_probs=214.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHH-HH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN-TL 104 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l 104 (349)
++.-.--+...+...|++.+|+.-|....+.. +.+-.++-.-...|...|+...|+.-+.+.++. +||-..-. .-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 44555667788888999999999998887642 233344445556788888888888888888775 66643222 22
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCc------------ch--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEP------------DV--WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT 170 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (349)
...+.+.|.+++|..-|+.+++..... .. ......+..+...|+...|+.....+++.. +-|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 345778899999999999988764211 11 112233455677889999999999988863 558888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH----HHHHH--
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV----TLCSL-- 244 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l-- 244 (349)
+..-..+|...|++..|+.-++...+..-. +..++--+-..+...|+.+.++...++..+. .|+.. .|..+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 888899999999999999888888776543 5666666777788889999988888887764 34432 22211
Q ss_pred -------HHHHHhcCChhhHHHHHHHHhhCCCCchHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHH
Q 018882 245 -------VRAYGHAGKPEKLGSVLRFIDNSDIMLDTV---FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRT 313 (349)
Q Consensus 245 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ 313 (349)
+......+++.++....+...+..+..... .+..+-.++...|++.+|++...+..+. .|| ..++.-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 122344566777777777766654432222 3445666777888999999998888875 444 777777
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 314 MVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
-..+|.-..+++.|+.-++...+.+++
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 788888888899998888887776654
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=1.9e-06 Score=74.37 Aligned_cols=285 Identities=11% Similarity=0.052 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018882 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 88 (349)
.++++.+++..+.+ +.|+.+...+.--|+..++++.|.+..++.....+ ..+...|..+.-.+...+++..|+.+.+.
T Consensus 461 ~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 46788888888775 34444544555567788899999999999888733 57788899998889999999999999888
Q ss_pred HHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc---------------------C-------CCcchhhHHHHH
Q 018882 89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---------------------D-------CEPDVWTMNCTL 140 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~ 140 (349)
.... ...|-.....-+..-..-++.++++.....+..- | ..-...++..+.
T Consensus 539 al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 7654 1112111111122222244545544443332210 0 000112222222
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQP--S------INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
......+..-....- +....+.| + ...|......+.+.+..++|...+.+..... +.....|......
T Consensus 618 ~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred HHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 221110000000000 11111111 2 2234556677788899999998888887664 3367777777788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH--HHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS--VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
+...|.+++|.+.|......+ +-++.+.+++...+.+.|+...|.. ++..+.+.+. .+...|..+...+.+.|+.+
T Consensus 694 ~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchH
Confidence 889999999999999887764 4456788999999999999888888 9999998875 58999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 018882 291 EMKGVLEVMQQR 302 (349)
Q Consensus 291 ~a~~~~~~m~~~ 302 (349)
.|.+.|....+.
T Consensus 772 ~Aaecf~aa~qL 783 (799)
T KOG4162|consen 772 QAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=4.1e-06 Score=66.04 Aligned_cols=292 Identities=10% Similarity=0.122 Sum_probs=170.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 018882 7 QPEKAHELFQAMVDEGCDANTQSFTALL-SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 85 (349)
.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.+++.-..+.. +.++.+.|.......+.=+-..|++-
T Consensus 166 HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHH
Confidence 367888888888775 35555555444 34667777777777777766652 33344455444333332111122221
Q ss_pred HHH--------------HHhcCC------------CC-----chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchh
Q 018882 86 LSD--------------MSTQGI------------RP-----NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW 134 (349)
Q Consensus 86 ~~~--------------~~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 134 (349)
... +.++++ -| =+..--.|+-.|.+.++..+|..+.+++.. ..|-..
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Ey 319 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEY 319 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHH
Confidence 222 111110 01 112233455567888889998888877642 123222
Q ss_pred hHHHHHHH-----HHccCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 018882 135 TMNCTLRA-----FGNSGQIDTMEKCYEKFQSAGIQPSI-NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 135 ~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
....+..+ .......+-|.+.|+..-+++..-|+ .--..+...+.-..++++++..+..+...-...|...+ .
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-N 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-H
Confidence 22222211 11222345577777666555443322 12344555666667788888888888776444344433 5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH-HHHHHHHhcCChhhHHHHHHHHhhCCCCchHH-HHHHHHHHHHhc
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC-SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCLVDAYGRL 286 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~ 286 (349)
+.++.+..|++.+|+++|-.+....++ |..+|. .+.++|.+.+.++.|+.++-.+...+ +.. ....+...|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHH
Confidence 778889999999999999877554433 445555 45688889999999988776554322 333 344456678889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHH
Q 018882 287 KCFAEMKGVLEVMQQRGCKPDKVTY 311 (349)
Q Consensus 287 g~~~~a~~~~~~m~~~~~~p~~~~~ 311 (349)
+++--|.+.|+.+...+ |++.-|
T Consensus 475 ~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHhhhHHHccC--CCcccc
Confidence 99988999999888764 444433
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=3.2e-07 Score=78.56 Aligned_cols=220 Identities=10% Similarity=-0.012 Sum_probs=160.2
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
|--..-..+...+...|-...|+.+|+++. .|..++.+|...|+..+|..+..+..+. +|++..|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 333334456677888888899999988654 4556777888888888998888887773 7788888888
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
.+......-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888877765432 11112222234678888888887766653 44666777777777788888
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
+.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|.+.+-...+.|.++.|.+.+..+
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888888877765433 56788888888888888888888888887766 555667777777788888888888888776
Q ss_pred hh
Q 018882 265 DN 266 (349)
Q Consensus 265 ~~ 266 (349)
..
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 43
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=2.4e-05 Score=65.29 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
.-+|..++....+...+..|..+|.++.+.+..+ ...+.++++..+| .++.+-|.++|+.-.+.- .-++..-...+.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHH
Confidence 4567777888888888999999999999887666 6677788888665 578889999998855432 234555667888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.+...|+-..+..+|++....++.|+ ...|..++.-=..-|+.+.+.++-++...
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88999999999999999998866665 47899999988999999888877665433
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=3.2e-09 Score=54.17 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666666555
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=9.8e-07 Score=69.08 Aligned_cols=186 Identities=10% Similarity=0.020 Sum_probs=116.7
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH---HH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TY 101 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 101 (349)
....+..+...+...|+++.|...|+++.......|. ..++..+..++...|++++|...++++.+.... +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 3556667777778888888888888887765311111 135666777788888888888888888765321 111 34
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018882 102 NTLIDAYGRA--------KMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172 (349)
Q Consensus 102 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (349)
..+..++... |+.++|.+.++++.... |+. ..+..+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 4444455443 66777777777776552 322 12211111100 000 00 00112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
.+...+.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678899999999999998876642 224578888999999999999999988887654
No 104
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.4e-05 Score=65.05 Aligned_cols=287 Identities=13% Similarity=0.064 Sum_probs=155.4
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------------------
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIR------------------ 95 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 95 (349)
..++.+.+..++|+..++-.. +.+..+...-...+.+.+++++|.++|+.+.+.+.+
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 345557778888888777222 233445556667777888888888888877554321
Q ss_pred ---------CchHHHHHHH---HHHhccCcHHHHHHHHHHHhcc--------C-----CCcchh-hHHHHHHHHHccCCH
Q 018882 96 ---------PNTVTYNTLI---DAYGRAKMFAEMELTLVKMLSE--------D-----CEPDVW-TMNCTLRAFGNSGQI 149 (349)
Q Consensus 96 ---------~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~--------~-----~~~~~~-~~~~l~~~~~~~~~~ 149 (349)
....+|..+. ..++..|++.+|+++++...+. . +..... .-..+.-++-..|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0122343333 3455678888888888877221 1 011111 112244456678888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHH----HHH-----------------------------------------------HHHH
Q 018882 150 DTMEKCYEKFQSAGIQPSINTF----NIL-----------------------------------------------LDSY 178 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~----~~l-----------------------------------------------~~~~ 178 (349)
.+|..++...++... +|.... |.+ +..|
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776642 222111 111 1111
Q ss_pred Hh--------------------------------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 018882 179 GK--------------------------------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 179 ~~--------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
.. ......+..++...-+....-.....-..++.....|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 00 0011222222222222221112334445556666777888887777
Q ss_pred H--------HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 227 R--------LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS------DIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 227 ~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
. .+.+.+..| .+...+...+.+.++-+.|..++...... +-.--..++..+...-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 7 443333333 55556666666777766666666655421 0001112333344444567888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 293 KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 293 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
..+++++.+.+ ++|..+...++.+|++. +++.|..+
T Consensus 478 ~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 478 SSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 88888888753 45777888888888765 34555544
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=2.1e-06 Score=64.71 Aligned_cols=120 Identities=8% Similarity=-0.002 Sum_probs=76.7
Q ss_pred cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 018882 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY-GKAGH--FEKM 187 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 187 (349)
.++.+++...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655554 5556667777777777777777777777766654 33556666666543 45555 3677
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..++++..+.+.. +...+..+...+...|++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777666544 56666666667777777777777777766554
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=2.3e-05 Score=74.24 Aligned_cols=299 Identities=12% Similarity=0.029 Sum_probs=193.0
Q ss_pred CCCChHHHHHHHHHHHHcCC------CCC--hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGC------DAN--TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIK 71 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~ 71 (349)
..|++++|...+....+.-- .+. ......+...+...|++++|...++....... ..+. ...+.+..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGE 499 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHH
Confidence 46889999998887754310 111 11222334456689999999999998765311 1221 34455666
Q ss_pred HHHhcCChhHHHHHHHHHHhc----CCC-CchHHHHHHHHHHhccCcHHHHHHHHHHHhcc----CCC--c-chhhHHHH
Q 018882 72 SCLKAFAFDKVQALLSDMSTQ----GIR-PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE--P-DVWTMNCT 139 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l 139 (349)
.+...|++++|...+.+.... |.. ....++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 778899999999998887653 111 11234555667788899999999998876543 211 1 22334455
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhH-----HHH
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAG--IQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTY-----NIV 209 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l 209 (349)
...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|...+.......... ....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 566777899999999988875531 112 23345556677888999999999998875431110 11111 112
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-hHHHHHHHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIML-DTVFFNCLVD 281 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 281 (349)
+..+...|+.+.|...+........... ...+..+..++...|++++|...++..... +..+ ...+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2444568899999998877543221111 111345677888999999999999887542 3222 2345667788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
++.+.|+.++|...+.+..+..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999999988763
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=2.4e-06 Score=64.51 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=50.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
.+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+++.|..-|.+..+.... ++..++.+...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCC
Confidence 4444444444444444444444332 334444444444444444444444444444433222 33344444444444444
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018882 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
.+.|..++......+ .-+..+-..+..+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 444444444443332 22333334444444444444444443
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=5e-09 Score=53.48 Aligned_cols=32 Identities=34% Similarity=0.685 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=2.4e-06 Score=64.53 Aligned_cols=160 Identities=14% Similarity=0.036 Sum_probs=121.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55667777778877777777664433 23466666678888888899999998888887765 45888888888888899
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
|+.+.|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++......+. -|..+-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999988888887653 33456678888888888889888888888876653 36677777888888888888888776
Q ss_pred HHHH
Q 018882 297 EVMQ 300 (349)
Q Consensus 297 ~~m~ 300 (349)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=2.4e-05 Score=61.64 Aligned_cols=288 Identities=10% Similarity=0.001 Sum_probs=203.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHH---HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH-HHHHHHHHhcCCh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTAL---LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY-SILIKSCLKAFAF 79 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~ 79 (349)
..|++..|+.-|....+. |+..|.++ ...|...|+-..|+.=+....+. +||-..- ..-...+.+.|.+
T Consensus 50 a~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccH
Confidence 467788888888887764 34444444 45688889988999988888876 6775432 2344567899999
Q ss_pred hHHHHHHHHHHhcCCCC--c----------hHHH--HHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc
Q 018882 80 DKVQALLSDMSTQGIRP--N----------TVTY--NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~--~----------~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (349)
+.|..-|+..++....- + ...+ ...+..+.-.|+...|+.....+++.. +-|...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 99999999998873210 1 1111 223445567789999999999888764 5678888888999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh----hHHHH---------HHH
Q 018882 146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV----TYNIV---------IDA 212 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---------~~~ 212 (349)
.|++..|+.=+....+.. ..++..+.-+-..+...|+.+.++...++..+.+ ||.. .|..+ +..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887777664 3366666677788889999999999888888764 4321 12111 122
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
....++|.++.+-.+...+...... ...+..+-.++...+++.+|++...++..... .|..++-.-..+|.-...+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhhHHH
Confidence 3455677777777776665432212 23344556677778889999999998887542 3577888888888888888
Q ss_pred HHHHHHHHHHHhcC
Q 018882 290 AEMKGVLEVMQQRG 303 (349)
Q Consensus 290 ~~a~~~~~~m~~~~ 303 (349)
+.|+.-|+...+.+
T Consensus 358 D~AI~dye~A~e~n 371 (504)
T KOG0624|consen 358 DDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888777653
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=4.4e-07 Score=68.28 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=101.0
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH-hccCc--HHH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY-GRAKM--FAE 116 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~ 116 (349)
.++.+++...++...+.. +.|...|..+...+...|+++.|...+++..+.. +-+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 666778887887777654 6788889999999999999999999999888874 33677777777764 56666 488
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
|.+++++..+.+ +.+...+..+...+...|++++|...|+++.+.. +|+..-+. +|..
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence 999999988775 4466778888888889999999999999988874 44544443 3343
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=2.3e-06 Score=66.95 Aligned_cols=186 Identities=13% Similarity=0.049 Sum_probs=121.2
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch--hh
Q 018882 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI--VT 205 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 205 (349)
.....+......+...|+++.|...++++.+.. +.+ ..++..+..++...|++++|...++++.+..+.... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345566777778888899999999998887753 212 245677778888889999999999888776532111 13
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH
Q 018882 206 YNIVIDAFGRA--------GDLKQMEYLFRLMRSERIKPSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF 276 (349)
Q Consensus 206 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (349)
+..+..++... |+++.|...++.+.... |+. ..+..+..... .. ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHH--------HHHH
Confidence 44445555443 66778888888876543 332 22221111100 00 000 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 277 NCLVDAYGRLKCFAEMKGVLEVMQQRGC-KP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
..+...|.+.|++.+|...++...+... .| ....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2456678889999999999999887632 12 3567888999999999999999987776553
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=1.2e-05 Score=72.79 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=87.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
+...+..|+..+...+++++|.++.+..... .|+. ..|-.+...+.+.++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 4667777888887888888888888766665 3333 2333333345555554444333 22
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
+.......++..+..++..+... .-+...+..+..+|-+.|+.+++..+|+++.+.. +-|+.+.|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22333333333333333333332 2233356667777777777777777777777765 44677777777777777 77
Q ss_pred HHHHHHHHHHHhc
Q 018882 185 EKMSAVMEYMQKY 197 (349)
Q Consensus 185 ~~a~~~~~~~~~~ 197 (349)
++|..++.+....
T Consensus 166 ~KA~~m~~KAV~~ 178 (906)
T PRK14720 166 EKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666543
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=2.4e-05 Score=69.97 Aligned_cols=146 Identities=11% Similarity=-0.005 Sum_probs=101.9
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 018882 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV 209 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (349)
..++..+..|..+..+.|.+++|..+++...+.. +-+......+...+.+.+++++|....++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4456677777777778888888888888777753 334556667777777888888888888777776544 56666777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+..- +-...|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence 777777888888888888777633 34467777777777778888888888877765432 333444443
No 115
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.1e-05 Score=63.78 Aligned_cols=297 Identities=14% Similarity=0.022 Sum_probs=195.5
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCc
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKM 113 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 113 (349)
.+.+..|+++.|+..|.+..... ++|...|+.-..+++..|++++|.+--.+-.+. .|+ ...|.....++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45678899999999999998875 678999999999999999999998766666654 555 4578888888889999
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc---C-------------------------------------------
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS---G------------------------------------------- 147 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~------------------------------------------- 147 (349)
+++|+..|.+-++.. +.+...++-+..++... +
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999998877653 33333444444333110 0
Q ss_pred --CHHHHHHHHHHHHh--------cC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHH
Q 018882 148 --QIDTMEKCYEKFQS--------AG-------IQP------------S----------INTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 148 --~~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~ 188 (349)
+.+...+....+.. .+ ..| | ..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00001111101000 00 011 0 011244556666667777777
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH-------HHHHHHhcCChhhHHHHH
Q 018882 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS-------LVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~ 261 (349)
+-+....+.. -+..-++....+|...|.+..+...-....+.|- -...-|+. +..++.+.++++.+...+
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 7777776665 3566677777788888887777766666555442 12222222 334566677788888888
Q ss_pred HHHhhCCCCchHH-------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 262 RFIDNSDIMLDTV-------------------------FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 262 ~~~~~~~~~~~~~-------------------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.........|+.. -...-...+.+.|++..|.+.|.+++... +-|...|..-.-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 7765433333211 01122556778899999999999999986 347889999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHhhh
Q 018882 317 AYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+|.+.|.+..|.+-.+...+++++
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCch
Confidence 999999999998877766666543
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3.6e-05 Score=58.42 Aligned_cols=250 Identities=12% Similarity=0.092 Sum_probs=154.9
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
+-+.-.|.+..++..-...... +.+...-.-+-++|...|.+.....- ... |-.|....+..+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 3455567788777776665544 23334444456677777776544332 222 2234444444444444444444
Q ss_pred HHHH-HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 115 AEME-LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 115 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (349)
++.+ ++.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 334444444333443344444566888899999988876622 233333334556677788889999988
Q ss_pred HHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018882 194 MQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
|.+.. +..+.+.|..++.+ .+.+..|.-+|++|-+. .+|++.+.+....++...|++++|..+++.......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 88754 66777777777653 34678888899888643 578888888888888899999999999988887665
Q ss_pred CchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 018882 270 MLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQR 302 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 302 (349)
. ++.+...+|..-...|.. +...+.+.++...
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4 555555555555555554 3345566666654
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.7e-05 Score=59.08 Aligned_cols=251 Identities=10% Similarity=0.067 Sum_probs=163.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
+-+.-.|++..++..-....... -+...-.-+.++|...|.+..... +..... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 34455677877776655544331 233344445677777777654332 222222 344444444444444455544
Q ss_pred HHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 151 TME-KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 151 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
+-. ++.+.+.......+......-...|++.|++++|.+...... +......=+..+.+..+.+-|...++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344444444334344444445567899999999999887622 3334444455667888999999999999
Q ss_pred HhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018882 230 RSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305 (349)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 305 (349)
.+. .+..+.+.|..++.+ .+.+..|.-+|+++.+. ..|++.+.+-...++...|++++|..++++.......
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 863 356777777777664 35688899999999875 4589999999999999999999999999999988654
Q ss_pred CCHHHHHHHHHHHHhcCchhh-hHHHHHHHHHHh
Q 018882 306 PDKVTYRTMVRAYSTNGMKNH-AKEFQDLVEKMD 338 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 338 (349)
++.+...++.+-...|...+ ..+.+..+....
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 67887777777666776543 344555544433
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=1.5e-06 Score=61.94 Aligned_cols=109 Identities=6% Similarity=-0.052 Sum_probs=80.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018882 12 HELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 91 (349)
..+|++..+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666554 233 35556777778888888888888877664 56777778888888888888888888888887
Q ss_pred cCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 92 QGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.. +.+...+..+..++...|++++|...|+.....
T Consensus 87 l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 64 346777777888888888888888888887765
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=6.4e-05 Score=67.54 Aligned_cols=289 Identities=12% Similarity=0.134 Sum_probs=158.7
Q ss_pred HHHHHHHHcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018882 13 ELFQAMVDEGCD--ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 13 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 89 (349)
+++++..+.+++ .|+......+.++...+-+.+-+++++++.-.+.. ..+...-|.++-...+. +..++.+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 455666655443 35666777888888899999999999988765332 22233344444444443 444555555555
Q ss_pred HhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC---------------------CCcchhhHHHHHHHHHccCC
Q 018882 90 STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---------------------CEPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~ 148 (349)
-.-. .|+ +...+...+-+++|..+|++..-.+ .-.....|..+..+-.+.|.
T Consensus 1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 4432 111 1222333333444444443321100 01123456777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
..+|.+-|-+. .|+..|..+++...+.|.+++-.+.+...++..-.|... +.|+-+|++.++..+.++++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence 77776555331 266677788888888888888877777666655444443 467777777777666555442
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH-----------
Q 018882 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE----------- 297 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~----------- 297 (349)
-|+......+..-|...+.++.|.-++..+. -|..|...+...|++..|...-+
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 3555555566666666666666655554322 23344444444444444433222
Q ss_pred -------------HHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 298 -------------VMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 298 -------------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
+|...++.....-..-++.-|...|-+++...+++.
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 222223333444555666666666666655555543
No 120
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=6.2e-05 Score=67.61 Aligned_cols=157 Identities=14% Similarity=0.204 Sum_probs=93.9
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH
Q 018882 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
+.+++|.+.-++.. ....|+.+..+-.+.+.+.+|.+-|-+ . -|+..|..++....+.|.+++..+.
T Consensus 1089 ~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyik---a---dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIK---A---DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred hhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHh---c---CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 44555555544432 235667777777777777777655532 2 1566777777777777777777777
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018882 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS 200 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 200 (349)
+.-..+....|.+. +.++-+|++.++..+.++++ ..|+......+.+-|...+.++.|.-+|.
T Consensus 1156 L~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-------- 1218 (1666)
T KOG0985|consen 1156 LLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-------- 1218 (1666)
T ss_pred HHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH--------
Confidence 76666655455544 45667777777766654443 23455555556666666666666655554
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
++..|..|...+...|++..|.+.-++
T Consensus 1219 -~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 -NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred -HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 233455555566666666666554443
No 121
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=5.8e-05 Score=66.33 Aligned_cols=302 Identities=11% Similarity=0.067 Sum_probs=171.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC--------CCCHHHHHHHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC--------QPDVNTYSILIKSC 73 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~ll~~~ 73 (349)
|...|+.+.|.+-++.+.. ..+|..+.+.|.+.++++-|.--+-.|....|. .|+ ..=.-..-..
T Consensus 738 yvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 4556888888887777654 468999999999999888877666666443211 121 1111222234
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018882 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
...|.+++|+.+|.+-++. ..|=..|-..|+|++|.++-+.--+..+ ..||.....-+...++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 5678888888888876653 3444566677888888887665432222 234445555555667777777
Q ss_pred HHHHHHH----------hcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------
Q 018882 154 KCYEKFQ----------SAG---------IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY--------------- 199 (349)
Q Consensus 154 ~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------- 199 (349)
+.|++.. ... -..|...|......+-..|+.+.|+.+|......-.
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa 958 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAA 958 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHH
Confidence 6665432 110 122445556666666677888888877776543210
Q ss_pred -----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh---------------hHHH
Q 018882 200 -----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE---------------KLGS 259 (349)
Q Consensus 200 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~a~~ 259 (349)
.-|....-.+.+.|-..|++.+|..+|.+.. +|.+.|+.|-..+--+ .|.+
T Consensus 959 ~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aAr 1029 (1416)
T KOG3617|consen 959 RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAAR 1029 (1416)
T ss_pred HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHH
Confidence 1133333445555555555556655555442 2223333222221111 1111
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcC--CCCCHHHHHHHHHHHHhcCchhhhHH
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE--------VMQQRG--CKPDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
.|++ .|. -+...+..|-+.|.+.+|+++-- +++..+ ...|+...+.-..-+....++++|..
T Consensus 1030 YyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1030 YYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred HHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 1111 110 11223445667777777766521 122222 33467777777788888899999999
Q ss_pred HHHHHHHHhh
Q 018882 330 FQDLVEKMDE 339 (349)
Q Consensus 330 ~~~~~~~~~~ 339 (349)
++-..++++.
T Consensus 1102 lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1102 LLCLAREFSG 1111 (1416)
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4.9e-05 Score=57.29 Aligned_cols=188 Identities=9% Similarity=-0.004 Sum_probs=102.7
Q ss_pred CChhHHHHHHHHHHhc---C-CCCchH-HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH
Q 018882 77 FAFDKVQALLSDMSTQ---G-IRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT 151 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (349)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++.++- +-+...-..-...+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3445555555555432 2 333433 23344555556666666666666665542 2222222222222345566677
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
|.++++.+.+.+ +.|..++.--+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777766654 445556655555555666666666666655554 234677777777777777777777777777654
Q ss_pred CCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCC
Q 018882 232 ERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSD 268 (349)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 268 (349)
.. |.++..+..+...+...| +.+.+.+.+....+..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 32 334444444554444443 3445666666666543
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=3.3e-06 Score=60.17 Aligned_cols=59 Identities=5% Similarity=-0.145 Sum_probs=22.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
.+..+..++...|++++|...|++..+.. +.+...+..+..++...|+.++|...|+..
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333333322 223333333333333333344333333333
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=8.6e-06 Score=73.72 Aligned_cols=251 Identities=12% Similarity=0.096 Sum_probs=170.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch-HHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHH
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC 138 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 138 (349)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+...++..++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 556788899999999999999999999977765 3443 3333344456666665444433 3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
++.......++..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+..+. ++...|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 3344444555555555556666543 35557888999999999999999999999998844 899999999999999 9
Q ss_pred hHHHHHHHHHHHhCCC---CCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 219 LKQMEYLFRLMRSERI---KPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
.++|..++.+....-+ .++ ...|..++. ....+.+.-..+.+.+... +..--..++-.+-..|-..++++++
T Consensus 165 L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 9999999988865411 010 111222211 1223344445555555443 3333455667777888899999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 293 KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 293 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
..+++.+.+.... |.....-++.+|. +.+.. ...++...++..
T Consensus 243 i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 243 IYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 9999999988543 6777788888876 44433 555555555544
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=1.9e-05 Score=70.57 Aligned_cols=148 Identities=8% Similarity=0.007 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.+.+...+..|.....+.|.+++|..+++...+..+. +......+...+.+.+++++|....++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4556888899999999999999999999999887644 67778888889999999999999999988765 456677788
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 315 (349)
+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+.- .|-...|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 88899999999999999999988543 357888899999999999999999999988762 23445555444
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=6.8e-05 Score=56.58 Aligned_cols=190 Identities=12% Similarity=0.085 Sum_probs=139.8
Q ss_pred CCChhHHHHHHHHhhcCCC---CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHH
Q 018882 40 SGLFDKAFSLLEHMKNTPD---CQPDVN-TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~---~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (349)
..+.++.++++..+..... ..++.. .|..++-+....++.+.|..+++.+... ++-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4567788888877764321 234443 4667777888899999999999998887 3333333333333455679999
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
+|.++++.+.+.+ +.|..++..-+.+.-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999887 566777776666677778877888888887776 56799999999999999999999999999998
Q ss_pred hcCCCCchhhHHHHHHHHHhcC---ChHHHHHHHHHHHhCC
Q 018882 196 KYHYSWTIVTYNIVIDAFGRAG---DLKQMEYLFRLMRSER 233 (349)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 233 (349)
-..+. ++..+..+...+...| +.+.+..+|.+..+..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 76532 5555666666554444 5667888888887654
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=9.8e-05 Score=61.04 Aligned_cols=182 Identities=14% Similarity=0.024 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhccC--CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 114 FAEMELTLVKMLSED--CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
..++....+++...+ -.|+...+...+........-..+..++.+..+. .-...-|.. ...+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHHH
Confidence 444444444444332 2344444555555443333333333333222221 112222333 33456778899999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018882 192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
+.+....+ -|+..+......+...++.++|.+.++.+.... |+ ....-.+..++.+.|++.+|...++.......
T Consensus 330 ~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p- 405 (484)
T COG4783 330 QPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP- 405 (484)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-
Confidence 88877653 366677777788889999999999999888753 44 56667788889999999999998888877654
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
-|+..|..|..+|...|+..++.....++...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 58889999999999988888887766655443
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.57 E-value=4.4e-06 Score=59.12 Aligned_cols=99 Identities=10% Similarity=0.051 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+......+...+...|++++|.+.|+.+.... +.+...+..+...+...|++++|...++...+.+ +.+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 33445555566666677777777776665542 3455666666666666667777776666665553 33455555566
Q ss_pred HHHhccCcHHHHHHHHHHHhcc
Q 018882 106 DAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.++...|++++|...++...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666654
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=0.00016 Score=59.82 Aligned_cols=119 Identities=11% Similarity=-0.034 Sum_probs=72.1
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
+...|++++|+..++.+.... +-|..........+.+.++..+|.+.++++....+. .....-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 345566666666666666552 334555555566666667777777777666665422 244555556666667777777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
..+++...... +-|+..|..|.++|...|+..++.....+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 66666665443 455666666777777777666665554443
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=7.7e-06 Score=57.85 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
....+...+...|++++|...++.+...+ +.+...+..+...+...|+++.|...++...+.+. .+...+..+...|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 34444445555555555555555554433 33445555555555555566666655555554432 24445555555566
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 018882 285 RLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~ 302 (349)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666555554
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.52 E-value=5e-05 Score=68.00 Aligned_cols=82 Identities=10% Similarity=-0.074 Sum_probs=49.6
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
.|...+....+..- .+..+|+.|... ...|.+.-|.--|-.-.... +....+|..+...+.+..+++.|...+..++
T Consensus 801 ~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 45555555554432 356667666554 44456655555554443332 2256677777777778888888888887777
Q ss_pred HHhhh
Q 018882 336 KMDET 340 (349)
Q Consensus 336 ~~~~~ 340 (349)
.+++.
T Consensus 878 SLdP~ 882 (1238)
T KOG1127|consen 878 SLDPL 882 (1238)
T ss_pred hcCch
Confidence 76654
No 132
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=4.2e-05 Score=67.18 Aligned_cols=240 Identities=14% Similarity=0.099 Sum_probs=165.7
Q ss_pred ChhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------C
Q 018882 26 NTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-G--------I 94 (349)
Q Consensus 26 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~ 94 (349)
|..+-..++.. |...|+.+.|.+-.+-++. ...|..+.+.|.+.++++-|.-.+-.|... | .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 55566666653 7788999999888776653 468999999999999998888777766432 1 1
Q ss_pred CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018882 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (349)
.|+ .+=....-.....|.+++|..+|++..+. ..+=+.|-..|.+++|.++-+.=.... =..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 222 22222333345779999999999998743 345566778899999998775533222 23566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----------cCC---------CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQK----------YHY---------SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (349)
...+...++.+.|++.|++... ..+ ..|...|.-....+-..|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 7777778888888888775321 110 12456666667777788888888888877643
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
|.++++..|-.|+.++|.++-++-. |......|.+.|-..|++.+|..+|.+..
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5567777788888888877765432 44455567888888888888888876654
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.001 Score=59.31 Aligned_cols=222 Identities=16% Similarity=0.126 Sum_probs=152.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
..+++..|++...++.+. .|+.. |...+.+ +.+.|+.++|..+++.....+ .-|..+...+-.+|.+.+..++
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhH
Confidence 467889999999998876 35543 3334444 668999999999998887764 3488899999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC-C---------HHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG-Q---------IDT 151 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 151 (349)
|..+|++.... .|+......+..+|.+.+++.+-.++--++.+. .+-....+=.+++...... . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999998876 577778888889999998877655555444443 1233333334444433221 1 223
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 152 MEKCYEKFQSAG-IQPSINTFNILLDSYGKAGHFEKMSAVME-YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 152 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 566666666554 21122222233344567889999999994 3334333345555566778888899999999999998
Q ss_pred HhCC
Q 018882 230 RSER 233 (349)
Q Consensus 230 ~~~~ 233 (349)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8876
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=4.2e-05 Score=54.71 Aligned_cols=116 Identities=17% Similarity=0.121 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhh
Q 018882 181 AGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 256 (349)
.++...+...++.+.+....- .....-.+...+...|++++|...|+........|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555443211 012222233445555666666666655555431121 1123334455555566666
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
|...++...... ..+..+......|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 665554433222 2334445555556666666666555543
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.44 E-value=4.9e-07 Score=46.87 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999988887
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.43 E-value=0.0011 Score=59.03 Aligned_cols=225 Identities=9% Similarity=0.032 Sum_probs=152.8
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS--CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
....+++..|+....++.+. .|+.. |..++.+ +.+.|..++|..+++.....+.. |..|...+-.+|.+.++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk---~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK---HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH---CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 34678899999999998887 45543 3333333 45789999999999988777655 888999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------H
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH----------F 184 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~ 184 (349)
++|..+|++..+. .|+......+..+|.+.+.+.+-.++--++-+. .+-+...+=.++....+.-. .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999866 577888888889999999887755555555443 23344444344444433211 2
Q ss_pred HHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018882 185 EKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRL-MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262 (349)
Q Consensus 185 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (349)
.-|.+.++.+.+.+ .--+..-...-...+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 33555566665443 111222222333445678889999999943 3333334444555566777888888888888888
Q ss_pred HHhhCCC
Q 018882 263 FIDNSDI 269 (349)
Q Consensus 263 ~~~~~~~ 269 (349)
++...+.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 8887764
No 137
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.41 E-value=0.00011 Score=63.86 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=60.9
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
....++|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++-.|..|.+.|+|+.|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 345556666666666655542 22334566666777777777777776532 2234456667777777777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (349)
.++-.+.. |.......|..-..-.-..|++.+|.+++-
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 76665542 223334445444455555666666655543
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.41 E-value=5.8e-07 Score=46.21 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 306 (349)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 139
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.41 E-value=9e-06 Score=67.59 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=62.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.+..+++.=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555555555555555433 11111233345556666666666666655555555666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
+..+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666665555555544444554444444433
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=4.3e-05 Score=54.66 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch--HHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD--TVFFN 277 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 277 (349)
...|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......++ .....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34455555555 4788999999999988763 222 23444566888999999999999999988763333 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
.+...+...|++++|+..++..... ......+......|.+.|++++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6788899999999999999775443 23556677888899999999999999875
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=2.7e-05 Score=64.52 Aligned_cols=127 Identities=11% Similarity=0.088 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
......|+..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++++..+.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444556667777788888888888887664 44 34456777777777788888888877653 4466666667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+.+.++++.|..+.+++.+..+. +..+|..|..+|...|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888888776533 56788888888888888888888887764
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=3.1e-05 Score=64.19 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=102.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...++..+...++++.|.++++++.+.. |+ ....+++.+...++-.+|.+++.+..+.... +...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 4456677778899999999999999874 44 4455788888889999999999988866533 67777878888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.++++.|..+.+++.+.. +-+..+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999998764 4455699999999999999999999888764
No 143
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.36 E-value=0.0002 Score=62.43 Aligned_cols=137 Identities=17% Similarity=0.255 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
+.+......|.+|+.+++.++.... -..-|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444566778888888887776543 2455677778888888888888888643 2345567778888888
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
+.|.++-.+... .......|-.-..-+-++|++.+|.+++-.+. .|+ ..|..|-+.|..+...++.++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 888877666543 33455566666666778888888887764322 244 346778888888877776553
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.3e-06 Score=45.21 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.30 E-value=1.5e-06 Score=44.65 Aligned_cols=32 Identities=38% Similarity=0.692 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRP 96 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (349)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 146
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.30 E-value=0.00045 Score=62.23 Aligned_cols=216 Identities=12% Similarity=0.028 Sum_probs=149.7
Q ss_pred cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
+...++..|-+..+.. +.-...|..|...|+..-+...|.+.|+...+.. ..+..........|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3666666666665443 2224578888888888888899999999988875 3477788899999999999999998843
Q ss_pred HHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018882 193 YMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 193 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (349)
..-+.. ...-...|....-.|...++...+..-|+...... +.|...|..+.++|...|++..|.++|.++.... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 332221 11112233344455678889999999999887665 5678899999999999999999999999887754 3
Q ss_pred hHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCchhhhHHHHHHH
Q 018882 272 DTVFFNC--LVDAYGRLKCFAEMKGVLEVMQQR------GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 272 ~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
+. .|.. .....+..|.+.+|...+...... +..--..++......+...|-..++..+++.-
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 32 2222 233456789999999988877643 11223445555555566666666666666543
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.27 E-value=3e-05 Score=64.56 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=100.8
Q ss_pred CCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc--CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018882 93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE--DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT 170 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (349)
+.+.+......+++.+....+.+++..++.+.... ....-..|..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667778888888888888889999988888765 2233345667999999999999999999998888999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998887766555677777767666655
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.24 E-value=2.3e-05 Score=51.16 Aligned_cols=74 Identities=20% Similarity=0.418 Sum_probs=39.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC-CCchHHHHHHHHHHhccC--------cHHHHHHHHHHHhccCCCcchhhHHHHH
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQGI-RPNTVTYNTLIDAYGRAK--------MFAEMELTLVKMLSEDCEPDVWTMNCTL 140 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (349)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444445666666666666666666 566666666665554432 1233444444444444455555555444
Q ss_pred HHH
Q 018882 141 RAF 143 (349)
Q Consensus 141 ~~~ 143 (349)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.21 E-value=3.3e-05 Score=50.48 Aligned_cols=76 Identities=9% Similarity=0.200 Sum_probs=50.4
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCC-CchHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDI-MLDTVFFNCLVDAYGRLK--------CFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 315 (349)
|..|...+++...-.+|+.+++.++ .|+..+|+.++.+..+.. +.-..+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444445666666666666666666 566666666666655432 2345677788888888888888888888
Q ss_pred HHHHh
Q 018882 316 RAYST 320 (349)
Q Consensus 316 ~~~~~ 320 (349)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=0.00017 Score=57.72 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH-HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA-FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (349)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. .+.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 55666666666666777777777766432 2233334333333 22245555577777776655 344666666666767
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 179 GKAGHFEKMSAVMEYMQKYHYSWT---IVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
...++.+.|..+|+..... +.++ ...|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777666544 2212 24666666666667777777777666654
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=8.4e-05 Score=48.52 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 018882 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG 109 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (349)
+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 4455556666777777777777666542 3334555566666666677777777776666553 223345566666666
Q ss_pred ccCcHHHHHHHHHHHhc
Q 018882 110 RAKMFAEMELTLVKMLS 126 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~~~ 126 (349)
..|+++.|...+....+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666666553
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=0.00014 Score=50.00 Aligned_cols=99 Identities=7% Similarity=-0.027 Sum_probs=49.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CchHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP-DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIR--PNTVTYNTLI 105 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 105 (349)
++..++..+.+.|++++|.+.|+.+....+-.+ ....+..+..++.+.|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555556666666666666554321001 1234444555555666666666666655543111 1133444455
Q ss_pred HHHhccCcHHHHHHHHHHHhcc
Q 018882 106 DAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.++...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555556666666666555544
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=8.9e-06 Score=52.00 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCD-ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+++++. .+.. +.+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777777777765321 1344455567777777777777777766 2221 223333444566777777777777
Q ss_pred HHHHH
Q 018882 84 ALLSD 88 (349)
Q Consensus 84 ~~~~~ 88 (349)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.08 E-value=0.00035 Score=56.01 Aligned_cols=129 Identities=11% Similarity=0.075 Sum_probs=56.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS-YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (349)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554332 1223333333333 22234444455555555443 223445555555555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 214 GRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
...++.+.|..+|++.... +.++. ..|...++-=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555433 11111 2444444444445555555555444444
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.06 E-value=7.1e-06 Score=40.98 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 304 (349)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=0.00043 Score=47.53 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=7.7
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 018882 175 LDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~ 194 (349)
..++.+.|+++.|...++.+
T Consensus 46 ~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHhhccHHHHHHHHHHH
Confidence 33333333333333333333
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.04 E-value=0.00017 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
+..+...+...|+++.|...+...
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333444444444444444333
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.02 E-value=0.0002 Score=53.11 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=63.7
Q ss_pred CchhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018882 201 WTIVTYNIVIDAFGRA-----GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (349)
.+-.+|..++..|.+. |..+=....++.|.+-|+..|..+|+.|+..+=+ |.+- | ...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RNF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-ccH
Confidence 3667777777777643 4555556666777777777777777777776654 3221 1 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
+..+...|- .+-+-|++++++|...|+-||..++..++..+.+.+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111111111 233557888888888888888888888888886655
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.02 E-value=0.00033 Score=49.47 Aligned_cols=98 Identities=9% Similarity=-0.109 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
....-.+...+...|++++|..+|+-+.... +-+..-|..|..++...|++++|+..+.......+ -|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3344445555667788888888887776554 34556666777777778888888888887777664 467777777888
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 018882 283 YGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~ 302 (349)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888776654
No 160
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.02 E-value=0.0066 Score=51.41 Aligned_cols=159 Identities=6% Similarity=0.036 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
.+|..+++...+..-.+.|..+|.+..+.+..+ ++...++++..+|. ++..-|..+|+--... ..-++.-....+.-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 356777888888888999999999999887666 77888888888775 6789999999875543 12333445567777
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcC
Q 018882 248 YGHAGKPEKLGSVLRFIDNSDIMLD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG---CKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g 322 (349)
+...++-..+..+|+.+...+..++ ...|..++..=..-|+...+.++-+++...= ..+....-..+++-|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 8889999999999999988755544 5789999999999999999999988876541 2222233445556665555
Q ss_pred chhhhHH
Q 018882 323 MKNHAKE 329 (349)
Q Consensus 323 ~~~~a~~ 329 (349)
....-..
T Consensus 525 ~~~c~~~ 531 (656)
T KOG1914|consen 525 LYPCSLD 531 (656)
T ss_pred cccccHH
Confidence 4443333
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=0.00076 Score=49.83 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555566666666666666666654432221 2455556666666666666666666655432 223444445555
Q ss_pred HHHhcCChhh
Q 018882 247 AYGHAGKPEK 256 (349)
Q Consensus 247 ~~~~~~~~~~ 256 (349)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555555433
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=0.00017 Score=59.99 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|++++|++.|++..+.. +.+...|..+..++...|++++|+..++++.... +.+...|..+..++...|++++|.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566777777777766653 3445566666666667777777777777666653 345556666666666777777777
Q ss_pred HHHHHHHhc
Q 018882 84 ALLSDMSTQ 92 (349)
Q Consensus 84 ~~~~~~~~~ 92 (349)
..|++..+.
T Consensus 91 ~~~~~al~l 99 (356)
T PLN03088 91 AALEKGASL 99 (356)
T ss_pred HHHHHHHHh
Confidence 777666654
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=0.00036 Score=58.00 Aligned_cols=87 Identities=7% Similarity=-0.146 Sum_probs=40.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
+...|+++.|+..|+++.+.... +...|..+..++...|++++|+..++++.... +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 34445555555555555444322 34444444444555555555555555544432 22334444444445555555555
Q ss_pred HHHHHHHhh
Q 018882 258 GSVLRFIDN 266 (349)
Q Consensus 258 ~~~~~~~~~ 266 (349)
...++...+
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555544444
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.99 E-value=0.00041 Score=49.03 Aligned_cols=98 Identities=7% Similarity=-0.002 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
......+...+...|++++|..+|+.+....+. +..-|-.|..++-..|++++|++.|....... +-++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 334445556667888888888888888776543 67777778888888888888888888887766 4566777778888
Q ss_pred HHhcCChhhHHHHHHHHhhC
Q 018882 248 YGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~ 267 (349)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888876653
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0046 Score=48.38 Aligned_cols=177 Identities=12% Similarity=0.144 Sum_probs=101.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF---NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
....+...|++++|.+.|+.+...-.. +.... -.+..++.+.+++++|...+++..+..+.-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455677777887777777765322 22222 34556677778888888888777765433223333333333321
Q ss_pred --c---------------CCh---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018882 216 --A---------------GDL---KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 216 --~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (349)
. .+. ..|...|+.++ .-|-.+.-..+|...+..+... .- ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~---la-~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR---LA-KY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH---HH-HH
Confidence 1 011 12333333333 3333333344444444433321 01 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
--.+.+-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124667788899999999888888876 333456667788889999999999888776553
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.97 E-value=4e-05 Score=48.94 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 018882 174 LLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~ 193 (349)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.001 Score=49.11 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--hHHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPN--TVTYNTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444555555555554443321111 23444444445555555555555554443
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.94 E-value=0.0015 Score=52.65 Aligned_cols=129 Identities=17% Similarity=0.230 Sum_probs=70.1
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----Cc
Q 018882 135 TMNCTLRAFGNS-GQIDTMEKCYEKFQSA----GIQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WT 202 (349)
Q Consensus 135 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 202 (349)
.+..+...|... |+++.|.+.|++..+. + .+ -...+..+...+.+.|++++|..+|+++...... .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344445566666 7778877777776542 2 11 1334566777788888888888888877654321 12
Q ss_pred hh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC--CC--CcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 203 IV-TYNIVIDAFGRAGDLKQMEYLFRLMRSER--IK--PSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 203 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.. .+-..+-++...||+..|...+++..... .. ........|+.++ ..|+.+.....+....
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHc
Confidence 21 22223335556788888888888876442 21 1234555666655 4555555444444443
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.5e-05 Score=39.73 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.92 E-value=2.5e-05 Score=47.58 Aligned_cols=62 Identities=27% Similarity=0.397 Sum_probs=42.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 69 (349)
+.|++++|++.|+.+.+.. +.+..++..+..++.+.|++++|.++++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 4677788888888777663 446677777777888888888888888777766 4554444433
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0016 Score=50.95 Aligned_cols=121 Identities=14% Similarity=0.053 Sum_probs=92.7
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhC
Q 018882 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNS 267 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 267 (349)
++.-...++. |...|-.|..+|...|+.+.|..-|.+..+.. +++...+..+..++..+.+ ..++..+++++...
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3333344433 88999999999999999999999999987764 5667777777777665543 55788999999887
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.. -|+.+...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 223 D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 223 DP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred CC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 64 478888888999999999999999999999873 34444555554
No 172
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.90 E-value=0.00026 Score=52.55 Aligned_cols=115 Identities=18% Similarity=0.273 Sum_probs=77.6
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHH
Q 018882 47 FSLLEHMKNTPDCQPDVNTYSILIKSCLKA-----FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121 (349)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 121 (349)
...|+..... ..+-.+|..++..+.+. |..+=....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|
T Consensus 34 ~~~f~~~~~~---~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 34 EELFERAPGQ---AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred HHHHHHHhhc---cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3444444322 46777788888777653 5666677788888888999999999999988865 3321 11122
Q ss_pred HHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018882 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183 (349)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (349)
+.+-- -.-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 109 Q~~F~-----------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFM-----------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhc-----------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 22211 1123446688888899988988999999888888877665
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.88 E-value=0.0005 Score=50.59 Aligned_cols=62 Identities=6% Similarity=-0.133 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
.+..+...+...|++++|...|+........+ ...++..+...+...|++++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555554332111 123445555555555555555555555543
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0073 Score=49.38 Aligned_cols=52 Identities=8% Similarity=-0.084 Sum_probs=23.8
Q ss_pred hcCChHHHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 215 RAGDLKQMEYLFRLMRSE---RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.-.+...+
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 444555555555544432 2233334444444444455555555554444443
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=0.00064 Score=50.06 Aligned_cols=60 Identities=8% Similarity=-0.094 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--chHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRP--NTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
|..+...+...|++++|...+++.......+ ...++..+..++...|++++|...+++..
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444455555555444444331111 11234444444444455555554444444
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.87 E-value=0.0076 Score=47.18 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=35.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCchHHH---HHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY---NTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
....+...|++++|.+.|+.+...-.. +...- -.+..++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455677777777777777765221 12221 34556667777777777777777665
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.85 E-value=0.006 Score=49.17 Aligned_cols=148 Identities=14% Similarity=0.218 Sum_probs=78.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CC-CCchhhHHHHHHH
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA-GHFEKMSAVMEYMQKY----HY-SWTIVTYNIVIDA 212 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~ 212 (349)
.+..|...|++..|-+++.. +...|... |+++.|.+.|++..+. +. ..-...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34455566666655544443 33344444 6777777777665432 20 1123455666777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-----CcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCC--CC--chHHHHHHHHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIK-----PSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSD--IM--LDTVFFNCLVDA 282 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~li~~ 282 (349)
+.+.|++++|.++|++....... .+. ..+...+-++...||+..|...++...... +. ........|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 78888888888888877654221 122 123334445666788888888888776442 21 223455566666
Q ss_pred HHhc--CCHHHHHHHHHHHHh
Q 018882 283 YGRL--KCFAEMKGVLEVMQQ 301 (349)
Q Consensus 283 ~~~~--g~~~~a~~~~~~m~~ 301 (349)
+-.. ..+..+..-|+.+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS-
T ss_pred HHhCCHHHHHHHHHHHcccCc
Confidence 6442 335555555554443
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.0026 Score=55.45 Aligned_cols=142 Identities=9% Similarity=-0.052 Sum_probs=93.7
Q ss_pred CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 018882 164 IQPSINTFNILLDSYGKAG-----HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG--------DLKQMEYLFRLMR 230 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 230 (349)
.+.+...|..++++..... +...|..+|++..+..+. ....|..+..++.... +...+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4567788888888765432 367888899988887533 3445554444332221 1223333333333
Q ss_pred hC-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018882 231 SE-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 231 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 309 (349)
.. ..+.+...+..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 123445667777666667789999999999988876 57788888899999999999999999888776 34444
Q ss_pred H
Q 018882 310 T 310 (349)
Q Consensus 310 ~ 310 (349)
+
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 4
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00054 Score=53.27 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
+-+.+.+++++|+..|.+..+..+. |.+.|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3456778888888888888877644 77777788888888888888887777766554 334577888888888888888
Q ss_pred hHHHHHHHHhhCCCCchHHHHH
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
+|.+.|+...+.. |+-.+|-
T Consensus 167 ~A~~aykKaLeld--P~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALELD--PDNESYK 186 (304)
T ss_pred HHHHHHHhhhccC--CCcHHHH
Confidence 8888888877654 4444443
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.76 E-value=0.00022 Score=43.52 Aligned_cols=65 Identities=18% Similarity=0.088 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-chhhhHHHHHHHHHHh
Q 018882 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG-MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 338 (349)
...|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|.+.++...+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 455666666666666666666666666665322 4555666666666666 5666666666665544
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0029 Score=55.18 Aligned_cols=140 Identities=9% Similarity=-0.032 Sum_probs=98.8
Q ss_pred CCCCchhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--------ChhhHHHHHHHH
Q 018882 198 HYSWTIVTYNIVIDAFGRAG-----DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG--------KPEKLGSVLRFI 264 (349)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 264 (349)
..+.+...|...+.+..... +...|..+|++..+.. +-....+..+..++.... +...+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567889999988755322 3678999999998764 223344444443332221 122333333433
Q ss_pred hhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 265 DNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 265 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
... ....++..|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.++...++++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 332 123456788888777778899999999999999875 68889999999999999999999999998888765
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.027 Score=49.52 Aligned_cols=241 Identities=13% Similarity=0.108 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
.+|+.+...++....|++|.+.+..-... ...+.++.+...+++...+...+ +-+....-.+..++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHH
Confidence 34555555555555555555555432211 12444444544554444443333 33444555666677
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH--------------HHH
Q 018882 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY--------------NIV 209 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~l 209 (349)
.+.|.-++|.+.+-+. +. | ...+..|...++|.+|.++-+...- |.+.+. .--
T Consensus 863 ~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~ea 929 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEA 929 (1189)
T ss_pred HhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHH
Confidence 7777777766655332 21 1 2344556666677776666543321 111111 112
Q ss_pred HHHHHhcCChHHHHHHHHHHHh----CCCCCcHH----HHHHH-HHHH----------HhcCChhhHHHHHHHHhhC---
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRS----ERIKPSCV----TLCSL-VRAY----------GHAGKPEKLGSVLRFIDNS--- 267 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~----~~~~l-~~~~----------~~~~~~~~a~~~~~~~~~~--- 267 (349)
|..+.+.|+.-.|-+++.+|.+ .+.++-.. .+..+ +.-+ -..|..++|..+++...-.
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ 1009 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQS 1009 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHH
Confidence 3334455555555666655543 23222211 11111 1111 1235555555544332110
Q ss_pred CC----C--chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchhhhHHHH
Q 018882 268 DI----M--LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 268 ~~----~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
.+ - .....|-.|..-....|..+.|+..--.+.+. .+-|....|..+.-+-+....+....+.+
T Consensus 1010 ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1010 RILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 00 0 12233344445556678888888765544443 34566667766655444444443333333
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0012 Score=51.52 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=107.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (349)
.-+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+.....+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34678899999999999999974 458888899999999999999999999888887644 6789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHH-HhcCChh---hHHHHHHHHhhCCCCchHHHHHHHHHHH-HhcCCHHHHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAY-GHAGKPE---KLGSVLRFIDNSDIMLDTVFFNCLVDAY-GRLKCFAEMKGV 295 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~ 295 (349)
+|.+.|+..++ +.|+..+|..=++.. .+.+... .+..-++.....|..|+... .+ ...........+
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s------~~~~~l~nnp~l~~~ 238 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS------MFNGDLMNNPQLMQL 238 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh------hhccccccCHHHHHH
Confidence 99999999876 467777765544433 2333333 33344444444444344332 22 233333455556
Q ss_pred HHHHHh
Q 018882 296 LEVMQQ 301 (349)
Q Consensus 296 ~~~m~~ 301 (349)
...|..
T Consensus 239 ~~~m~~ 244 (304)
T KOG0553|consen 239 ASQMMK 244 (304)
T ss_pred HHHHhh
Confidence 666666
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.70 E-value=0.0064 Score=41.42 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHHHHHHHhcC
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g 287 (349)
++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..+++......+. .+......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 33445555555555555555443322 223334444555555555555555554432111 01111122233444555
Q ss_pred CHHHHHHHHHHH
Q 018882 288 CFAEMKGVLEVM 299 (349)
Q Consensus 288 ~~~~a~~~~~~m 299 (349)
+.++|+..+-..
T Consensus 90 r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 RPKEALEWLLEA 101 (120)
T ss_pred CHHHHHHHHHHH
Confidence 555555554433
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.70 E-value=0.00013 Score=44.42 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=30.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.|++++|+++|+++.... +.+...+..+..++.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666665542 335555556666666666666666666666554
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00049 Score=41.33 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=27.8
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
..+...|++++|...|+.+.+..+ -+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555554432 24445555555555555555555555555443
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.014 Score=47.86 Aligned_cols=259 Identities=9% Similarity=-0.057 Sum_probs=152.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
..+.+..++..|+..+...++... -+..-|..-...+...++++++.--.++-.+.. +-......-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 345566677777777777777642 245555555556666666766665555444321 001111112222222222222
Q ss_pred HHHHHH---------------HHHHhcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH--
Q 018882 151 TMEKCY---------------EKFQSAGI-QPSINTFNIL-LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID-- 211 (349)
Q Consensus 151 ~a~~~~---------------~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-- 211 (349)
+|.+.+ +.+..... +|.-.++..+ ..++.-.|+.++|...--.+.+... ...+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccc
Confidence 222222 11111111 2333333333 3455677888888888777766542 223333343
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHH-------------HHHHHHHhcCChhhHHHHHHHHhhC---CCCchHHH
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLC-------------SLVRAYGHAGKPEKLGSVLRFIDNS---DIMLDTVF 275 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 275 (349)
++...++.+.+...|++.+..+ |+...-. .=..-..+.|++..|.+.+.+.+.. +..++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3345677888888888876543 4432221 1122345789999999999998764 44567778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT---YRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
|.....+..+.|+..+|+.--++.... |... +..-..++...++|++|++-++...+.+.+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888888899999999999988888765 4333 333334567778999999999888777665
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.0004 Score=41.71 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=52.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+...+...|++++|...|++..+.... +...+..+..++...|++++|...++.+.+..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567789999999999999999998522 7788999999999999999999999998877653
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.028 Score=45.83 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
+.+..+.-+...|+...|..+-.+.. .|+...|...+.+++..+++++...+... . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34444555556666666666655542 46666666677777777777655554321 1 13355666666777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
+.|...+|..+...+ + +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 777776666665541 1 12334555666666665543
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.58 E-value=0.014 Score=42.32 Aligned_cols=128 Identities=12% Similarity=0.078 Sum_probs=70.5
Q ss_pred CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHH
Q 018882 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNI 173 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 173 (349)
.|+...-..|..++.+.|+..+|...|++....-.--|....-.+.++....+++..|...++.+.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555666666666666666666666665444455555556666666666666666666666554210 01222334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
+.+.+...|.+..|+.-|+.....- |+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 5566666666666666666666543 233322223333445555544433
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.02 Score=44.03 Aligned_cols=140 Identities=13% Similarity=-0.043 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH-----
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL----- 244 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 244 (349)
+.+.++..+.-.|.+.-...++.+..+...+.++.....+++.-.+.||.+.|...|++..+..-..+..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345677777778888888899999888876778888899999999999999999999977654333343333333
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR 312 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 312 (349)
...+.-++++..|...+.++...+. .|+...|.-.-+..-.|+...|.+.++.|.... |.+.+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 3445566788888888888877654 366666665556666788999999999999873 4444433
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.01 Score=40.43 Aligned_cols=56 Identities=9% Similarity=-0.064 Sum_probs=26.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555554443322 22333344444555555555555554443
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.56 E-value=0.0018 Score=52.79 Aligned_cols=263 Identities=13% Similarity=0.009 Sum_probs=150.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHcCCChhHHHHHHHHhh----cCCCCCCCHHHHHHHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDAN----TQSFTALLSAYGRSGLFDKAFSLLEHMK----NTPDCQPDVNTYSILIKSC 73 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~ll~~~ 73 (349)
+++.|+....+.+|+...+.| ..| ...|..|..+|.-.+++++|+++...=. ..+.-.-...+-..|...+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 578899999999999999887 333 3346667777777788888887643210 0000011122223344445
Q ss_pred HhcCChhHHHHHHHH----HHhcCCC-CchHHHHHHHHHHhccCc--------------------HHHHHHHHHHHhcc-
Q 018882 74 LKAFAFDKVQALLSD----MSTQGIR-PNTVTYNTLIDAYGRAKM--------------------FAEMELTLVKMLSE- 127 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~- 127 (349)
--.|.+++|.-+-.+ ..+.|-. .....+..|.+.|...|+ ++.|.++|.+-.+.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556667766543222 1222211 123445556666655442 33344444332211
Q ss_pred ---CC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 018882 128 ---DC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ----SAGIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQK-- 196 (349)
Q Consensus 128 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 196 (349)
|- -.-...|..+-..|.-.|+++.|+...+.-. +-|-. .....+..+.+++.-.|+++.|.+.|+....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 10 0112345555566667788888877655422 22211 2345677788888888999999888876432
Q ss_pred --cCC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHh----C-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 197 --YHY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS----E-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 197 --~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.|- .....+.-.|...|.-..++++|+.++.+-.. . ...-....+.+|..++...|..++|..+.....
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 12344555677777777788888887754321 1 112344677788888888888888887765543
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.013 Score=45.10 Aligned_cols=178 Identities=6% Similarity=-0.062 Sum_probs=108.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|+..+.+.-+..+... ...++..+-.....+..+++|++-. ....+.++.++...+.+.-..
T Consensus 134 ~lgnpqesLdRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl--------~~Vmy~~~~~llG~kEy~iS~ 197 (366)
T KOG2796|consen 134 YLGNPQESLDRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRL--------GRVMYSMANCLLGMKEYVLSV 197 (366)
T ss_pred hcCCcHHHHHHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHH--------HHHHHHHHHHHhcchhhhhhH
Confidence 345555555555544432 2233444444444466666666433 234455666667777777777
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHH-----HHHHHccCCHHHHHHHHHH
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT-----LRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~ 158 (349)
..+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..-+.+..+.+.+ ...|.-.+++..|...+.+
T Consensus 198 d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 198 DAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 77777777655566777777777777778888888888766655334444443333 2345566677777777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
+.... +.|+...|.-.-+..-.|+...|.+.++.|.+..
T Consensus 278 i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 278 ILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred ccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 76654 2344455544444555677888888888887764
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0077 Score=47.29 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc---CcHHHHHHHHHHHhccCCCcchhhH
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA---KMFAEMELTLVKMLSEDCEPDVWTM 136 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 136 (349)
+-|...|-.|..+|...|+++.|...|....+.. ++|+..+..+..++... ..-.++..+++++.... +-++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3445555555555555555555555555555442 23444444444433322 12344555555555443 3344444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44445555555555555555555554
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.48 E-value=0.0005 Score=41.89 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMST 91 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 91 (349)
+.+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555566666666666666666655542 334455555555566665 46666666555544
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.47 E-value=0.027 Score=42.84 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=10.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
...|.+.|.+..|..-++.+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3444555555555555555443
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.47 E-value=0.028 Score=42.81 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=86.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (349)
...+...|++.+|.+.|+.+...-. +-.....-.++.++.+.|+++.|...++...+..+.-....+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445566777777777777665421 11233444556667777777777777777665433222222222222222111
Q ss_pred ChHHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 218 DLKQMEYLFRLMRSERIK---PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
...... ....... --...+..++.-|-.+.-...|...+..+.+. .- ..--.+...|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHHHHH
Confidence 111110 0000000 00123444555555555555565555554431 11 111235677888888888888
Q ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHHhcCchhhhH
Q 018882 295 VLEVMQQRG--CKPDKVTYRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 295 ~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~ 328 (349)
-++.+.+.= ..-.......++.+|.+.|..+.+.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888761 1112345567777888888776443
No 199
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.39 E-value=0.01 Score=40.93 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
..++..++.++++.|+.+....+++..- |+.++... ..+. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4566666777777777766666665442 22222110 0000 12234566899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHh
Q 018882 283 YGRLKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~ 320 (349)
|+..|++..|+++++...+. +++.+..+|..|+.-+..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988766 777788999999885433
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.34 E-value=0.0048 Score=48.70 Aligned_cols=97 Identities=8% Similarity=0.004 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhccCC--CcchhhHH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMN 137 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 137 (349)
..|...+....+.|++++|...|+.+.+.- |+ ...+..+..+|...|++++|...|+.+.+.-. +.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 445555554556677777777777777652 32 24566677777777777787777777765421 11233444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 138 CTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
.+..++...|+.+.|..+|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777888888888777765
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.31 E-value=0.0073 Score=49.45 Aligned_cols=133 Identities=13% Similarity=0.022 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----hCCCC-CcHHHHHHHHHHHHhcCChhhHHHHHHHHh----hCCC-CchHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMR----SERIK-PSCVTLCSLVRAYGHAGKPEKLGSVLRFID----NSDI-MLDTV 274 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~ 274 (349)
.|..|...|.-.|+++.|+...+.-. +-|-+ .....+..+..++.-.|+++.|.+.++... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444444555566666655443211 11111 112345556666666666666666665432 1111 11223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
+..+|...|.-..+++.|+.++.+-... +..-....+.+|..+|...|..++|..+.++..+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344566666666666666655432211 11124556666666666666666666666555444
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.31 E-value=0.0016 Score=46.64 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhc-----cCCCcchhhH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTM 136 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 136 (349)
.+...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345556666777788888888887777763 44677777788888888888888877776643 2667766543
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.30 E-value=0.0022 Score=45.89 Aligned_cols=71 Identities=25% Similarity=0.158 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTY 311 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 311 (349)
....++..+...|+++.|....+.+....+ .+...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 445566667777888888888888777653 4777888888888888888888888777643 3777776653
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.00076 Score=41.62 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
.+.++++.|+++++.+.+.+ |.++..|.....++.+.|++++|.+.|+...+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34455555555555555442 334444444555555555555555555555443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.28 E-value=0.0081 Score=47.44 Aligned_cols=97 Identities=11% Similarity=-0.023 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CchHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI--MLDTVFFN 277 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 277 (349)
..|...+..+.+.|++++|...|+.+.+.- |+ ...+.-+...|...|++++|...|+.+.+..+ +.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 334444444455677777777777776542 22 24555666777777777777777777664321 11234444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+...+...|+.++|..+|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566666777777777777777665
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=97.26 E-value=0.018 Score=41.18 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=65.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.-+...|++++|..+|+-+.-.+ +-+..-+..|..++-..+++++|...+......+. -|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33457888888888888876554 34455567777777788888888888877655443 35555566778888888888
Q ss_pred HHHHHHHHHHhc
Q 018882 291 EMKGVLEVMQQR 302 (349)
Q Consensus 291 ~a~~~~~~m~~~ 302 (349)
.|+..|+.....
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 888888887773
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.25 E-value=0.0016 Score=40.75 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GC-KPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|.+++++..++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 45666777777777777777777766543 11 122 44566677777777777777777777666543
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.24 E-value=0.077 Score=46.40 Aligned_cols=252 Identities=15% Similarity=0.112 Sum_probs=140.3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHH---------HHHhhcCCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHhcCCC
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSL---------LEHMKNTPDCQPDVNTYSILIKSCLKAFAFD--KVQALLSDMSTQGIR 95 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~ 95 (349)
...+.+-+..|...|.+++|.++ |+.+... ..+...++..=.+|.+.++.. +...-++++++.|-.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 34455556667777777777654 2222111 223344555566777666543 444456777888877
Q ss_pred CchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHH-----HHHHHHHccCCHHHHHHHHHHHHhc--CCCCCH
Q 018882 96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMN-----CTLRAFGNSGQIDTMEKCYEKFQSA--GIQPSI 168 (349)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 168 (349)
|+... +...++-.|.+.+|.++|.+--.++.. ...|+ -...-+...|..++-..+..+-.+. .++-.
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 77643 445667788888888888765322100 11111 1122233444433322222221110 11111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH----------HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVME----------YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
.+....+...|+.++|..+.- ...+.. ..+..+...+...+-+...+.-|-++|..|-.
T Consensus 707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld-~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------- 775 (1081)
T KOG1538|consen 707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD-KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------- 775 (1081)
T ss_pred ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc-hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-------
Confidence 223344555677666665431 111111 12455666666666677778888888887743
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT-----------VFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
..++++.....+++++|..+-+...+. .||+ .-|...-++|.+.|+-.+|..+++++...
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 234667778889999998888776553 2332 12334556788899999999999888755
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.049 Score=39.69 Aligned_cols=126 Identities=8% Similarity=0.020 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCcHHHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER---IKPSCVTL 241 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 241 (349)
.|+...-..|..++.+.|+..+|...|.+...--+.-|....-.+.++....+++..|...++.+.+.. -.| .+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cch
Confidence 455555556666677777777777777666654444566666666666666677777776666665432 122 233
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..+.+.+...|+++.|+..|+.....-..|.... .....+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcchhHHHH
Confidence 4455666667777777777776666543333332 23334555565555443
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.15 E-value=0.013 Score=40.33 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=20.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHh
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHM 53 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 53 (349)
|..++..++.++++.|+++....+.+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 3456777888888888888777777654
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.09 E-value=0.13 Score=42.99 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSER-IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
..|...+....+....+.|..+|-++.+.+ +.++..++++++..++ .|++..|..+|+.-... ++-++...+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 456666777777778888999999988877 5677888888888665 57888888888875543 22233334556667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 283 YGRLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
+.+.++-..|..+|+..... +.-+ ...|..+|.--..-|+...+..+-+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77888888888888855443 1112 56788888877778887766665555544
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.09 E-value=0.13 Score=42.69 Aligned_cols=31 Identities=13% Similarity=-0.045 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+.-.+..++.+..-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445556666666677777777777776654
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.09 E-value=0.0049 Score=37.92 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=31.9
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
..|.+.++++.|++.++.+.... |.+...+.....++.+.|++++|...++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555566666666666665553 334455555555566666666666666665554
No 214
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.13 Score=41.98 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (349)
.+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345555677778899888888766552 36899999999999999999988876532 22347789999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018882 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318 (349)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 318 (349)
.+.|+..+|..++..+. + ..-+..|.+.|++.+|.+.--+.. |...+..+...+
T Consensus 248 ~~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~ 301 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRC 301 (319)
T ss_pred HHCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHC
Confidence 99999999988887621 1 456778899999999987654333 444444444433
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.98 E-value=0.073 Score=38.16 Aligned_cols=92 Identities=7% Similarity=0.037 Sum_probs=72.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
...-+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|...|......+ .-|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 334456789999999999988776644 67778888888888999999999998776544 2344556667888999999
Q ss_pred hhhHHHHHHHHhhC
Q 018882 254 PEKLGSVLRFIDNS 267 (349)
Q Consensus 254 ~~~a~~~~~~~~~~ 267 (349)
.+.|...|....+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988873
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.015 Score=45.06 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCchHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG--IRPNTVTYNTL 104 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 104 (349)
..|+.-+..+ +.|++..|...|....+... -.-....+--|..++...|+++.|..+|..+.+.- .+.-+..+-.|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3566655543 56668888888877766421 01122344457777888888888888887777651 11123566667
Q ss_pred HHHHhccCcHHHHHHHHHHHhcc
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
..+..+.|+.++|..+|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777788888888888888766
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.93 E-value=0.0028 Score=39.66 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcC----CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNT----PDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMS 90 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 90 (349)
.+++.+...|...|++++|++.|++..+. +...|+ ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666555421 100111 3344555555555555555555555543
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.88 E-value=0.069 Score=36.47 Aligned_cols=68 Identities=7% Similarity=0.061 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+.......+..+...|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44555666777777788787777887776533 566667777788888888888888888888777753
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.21 Score=43.55 Aligned_cols=178 Identities=17% Similarity=0.120 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCc-----hHHHHHHHHHHhc----cCcH
Q 018882 45 KAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG-IRPN-----TVTYNTLIDAYGR----AKMF 114 (349)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~ 114 (349)
-..-+|.-+.+. +||. +..++....=.||-+.+++.+.+..+.+ +.-. .-.|+..+..++. ....
T Consensus 175 ~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 175 FGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 334555555543 1443 3445666666677777777777665532 2211 1234444433333 3467
Q ss_pred HHHHHHHHHHhccCCCcchhhHHH-HHHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 115 AEMELTLVKMLSEDCEPDVWTMNC-TLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (349)
+.|.++++.+.+. -|+...|.. -.+.+...|++++|.+.|+...... .+.....+--+.-.+.-..+|++|...
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 8888888888765 465554433 3355667888888888888655321 122334455566677888899999999
Q ss_pred HHHHHhcCCCCchhhHHHHHH-HHHhcCCh-------HHHHHHHHHHH
Q 018882 191 MEYMQKYHYSWTIVTYNIVID-AFGRAGDL-------KQMEYLFRLMR 230 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-------~~a~~~~~~~~ 230 (349)
|..+.+.+ ..+...|.-+.. ++...++. ++|.+++.+..
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 98888754 335555555544 33456666 78888887764
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.71 E-value=0.076 Score=44.73 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=50.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.+...|+.+..+|...|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34667888888888888888888888887766 3443 35788888888888888888888888775
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.43 Score=42.71 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=75.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
.-.+.+--+.-+...|+..+|.++-.+.+ .||...|..-+.+++..+++++.+++-+..+ .+.-|.....
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 34455555666677788888888877764 5777888888888888888886666544433 2445666788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.+.
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 888888888888887644322 1 345677777877777664
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.68 E-value=0.38 Score=41.95 Aligned_cols=181 Identities=18% Similarity=0.096 Sum_probs=118.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc-----hhhHHHHHHHHHh----cCChHHH
Q 018882 153 EKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSWT-----IVTYNIVIDAFGR----AGDLKQM 222 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a 222 (349)
.-+|.-+... +||. +..++....=.||-+.+++.+....+.+ +.-. .-.|+.++..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3344444443 2332 3455666666789999999888765532 2211 2334455544443 3467889
Q ss_pred HHHHHHHHhCCCCCcHHHHHH-HHHHHHhcCChhhHHHHHHHHhhCC---CCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 223 EYLFRLMRSERIKPSCVTLCS-LVRAYGHAGKPEKLGSVLRFIDNSD---IMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
.+++..+.+. .|+...|.. -.+.+...|++++|.+.++...... .+.....+--+...++-.++|++|...|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999998765 566555543 3456677899999999999765321 122344566677888999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHH-HHhcCch-------hhhHHHHHHHHHHhhh
Q 018882 299 MQQRGCKPDKVTYRTMVRA-YSTNGMK-------NHAKEFQDLVEKMDET 340 (349)
Q Consensus 299 m~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~~~~~ 340 (349)
+.+.. ..+..+|..+..+ +...|+. ++|.+++..+..+...
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 99864 3355556555544 4667777 8888888888777653
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.53 E-value=0.37 Score=40.04 Aligned_cols=164 Identities=13% Similarity=0.027 Sum_probs=89.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGK---AGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
..++-+|....+++...++.+.+.... +.-+..+-....-++.+ .|+.++|.+++..+......+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344455777777777777777766541 11122222333444555 677777777777755444556667776666
Q ss_pred HHHHh---------cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hh---hHHHHH----HHHhhCC---CC
Q 018882 211 DAFGR---------AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK-PE---KLGSVL----RFIDNSD---IM 270 (349)
Q Consensus 211 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~~~~---~~ 270 (349)
..|-. ....++|...|.+.-+. .|+..+--.++-.+...|. .+ +..++- ..+.+.| ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 65421 11256677777665543 2443332222222223332 11 222222 1111222 12
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+--.+..++.+..-.|+.++|.+..+.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455667888888899999999999999876
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.096 Score=43.12 Aligned_cols=125 Identities=10% Similarity=0.030 Sum_probs=83.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCC---------CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKY-----HYS---------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
+.+.+.|++..|...|+..... +.+ .-..++..+..++.+.+++..|+..-...++.+ ++|...+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4566777777777777665432 111 123456677777888888888888888877766 5677777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQR 302 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 302 (349)
..-.+++...|+++.|+..|+.+.+..+. |-.+-+.++..-.+..+..+ ..++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77778888888888888888888876532 44455555555555444433 36677777543
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.50 E-value=0.57 Score=41.76 Aligned_cols=187 Identities=9% Similarity=0.001 Sum_probs=99.5
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHH------HHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 018882 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL------IKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
.|.+..|..+.......-.++.|...|-+.....|++.-...-... ...-.--|.+++|++++-+|-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 5888899999988888888889998888877665543211111111 111122477888888887776552
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh---------------
Q 018882 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS--------------- 161 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------- 161 (349)
..+..+.+.|++-.+.++++.--... -..-...|+.+...+.....|++|.+.|..-..
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFG 839 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhh
Confidence 23455566666666655554321110 011123455555555555555555554433211
Q ss_pred ------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 162 ------AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 162 ------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
..++-+....-.+..++.+.|.-++|.+.+-+.. . | ...+..|...++|.+|.++-++
T Consensus 840 ~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 840 ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1123344444555566666666666655543221 1 1 1233445555666666665544
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.6 Score=41.87 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
....+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..++|++.+++-+... ++.-|.-.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 334445556667788899999988877664 3688899999999999999998877766543 135677789
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
.+|.+.|+.++|.+.+.+.... . -...+|.+.|++.+|.++--+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999888765432 1 567889999999998876543
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.48 E-value=0.077 Score=45.49 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=71.8
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
..-.++++++.++.+.-.-.+.+ | ....+.++..+-+.|..+.|+++..+-. .-.....+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 44456666655555421111111 2 3345566666666666666665532211 12233445566666
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
|.++.++. .+...|..|.......|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 65544332 2444666666666666666666666655432 34455555566666665555555554
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 197 YHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
.|- ++....++.-.|+.++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 441 22333333444555555555543
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.47 E-value=0.057 Score=45.42 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=67.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC----VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
+...++.+..+|...|++++|...|++..+.. |+. .+|..+..+|...|+.++|...++...+.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 57788899999999999999999999987754 443 358889999999999999999999988752 11 222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHhcCC
Q 018882 278 CLVD--AYGRLKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 278 ~li~--~~~~~g~~~~a~~~~~~m~~~~~ 304 (349)
.+.. .+....+..+..++++.+...|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 01122333456667777766654
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.14 Score=41.10 Aligned_cols=154 Identities=8% Similarity=0.020 Sum_probs=99.0
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCchHHHHHHHHHHhccCc
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ---GIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 113 (349)
+...|+..+|-..++++.+.. |.|..++...=.+|.-.|+...-...+++.... +++........+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 334567777777777777653 567777777777788888887777777776654 223233333445556677888
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP---SINTFNILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 190 (349)
+++|++.-++..+.+ +.|...-......+...|+++++.++..+-...--.. -.+-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888887766 5677777778888888888888877765533221000 011121222334556788888888
Q ss_pred HHH
Q 018882 191 MEY 193 (349)
Q Consensus 191 ~~~ 193 (349)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 864
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.44 E-value=0.27 Score=43.24 Aligned_cols=256 Identities=11% Similarity=0.113 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHH---------HHHHHhcCCCCchHHHHHHHHHHhccCc--HHHHHHHHHHHhccC
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQAL---------LSDMSTQGIRPNTVTYNTLIDAYGRAKM--FAEMELTLVKMLSED 128 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 128 (349)
.|....+.+-+..+...|.+++|.++ |+.+... ..+.-.++..=.+|.+..+ +-+...-++++.++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34445555666677888888877543 2222221 1233344555566665554 334444566777777
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI-----LLDSYGKAGHFEKMSAVMEYMQKYHYSWTI 203 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 203 (349)
-.|+.. .+...++-.|++.+|-++|.+--..+- -...|+- +..-+...|..++-..+.++--+.. -+.
T Consensus 631 e~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r~~ 703 (1081)
T KOG1538|consen 631 ETPNDL---LLADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--RNI 703 (1081)
T ss_pred CCchHH---HHHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--hhc
Confidence 667764 345567778888888888865322110 1111111 2233444555444444443321110 011
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHH------HHhCCC---CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRL------MRSERI---KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (349)
.-=.+....+...|+.++|..+.-+ +.+.+. ..+..+...+...+.+...+..|.++|..+-+.
T Consensus 704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 1112334455667777777665421 111111 223345555555556666777788888777542
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV-----------TYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
..++......++|.+|..+-+...+. .||.. -|...-.+|.+.|+..+|.++++.+.
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 24667788899999999888766543 33321 22333457788888888877776654
No 231
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.41 E-value=0.053 Score=42.30 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=62.4
Q ss_pred chhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH
Q 018882 202 TIVTYNIVIDAFGRA-----GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF 276 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (349)
|-.+|-..+..+... +..+=....++.|.+-|+.-|..+|+.|+..+-+.. +.| ..++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP-~nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIP-QNVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------ccc-HHHH
Confidence 556666666665432 445555666777777787778777777776654322 111 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 018882 277 NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
......|-+.. +-+++++++|...|+.||..+-..|+.++.+.+.
T Consensus 129 Q~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 22222333322 3367778888888888888888888888766664
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.11 Score=35.49 Aligned_cols=90 Identities=9% Similarity=-0.058 Sum_probs=50.6
Q ss_pred HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH---HHHHHHHHHhccC
Q 018882 36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TYNTLIDAYGRAK 112 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 112 (349)
+++..|+++.|++.|.+....- +.....||.-..++--.|+.++|++-+++..+..-..+.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4556677777777776666542 4556667777777766777777766666665542111222 2222233455556
Q ss_pred cHHHHHHHHHHHhcc
Q 018882 113 MFAEMELTLVKMLSE 127 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~ 127 (349)
+-+.|..-|+..-+.
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 666666655554443
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.085 Score=43.41 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=71.3
Q ss_pred CCCCCChHHHHHHHHHHHHc-----CCC---------CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDE-----GCD---------ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS 67 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 67 (349)
|.+.|++..|...|++.... +.+ .-..+++.+..++.+.+++..|++.-++..... ++|.-..-
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALy 295 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALY 295 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHH
Confidence 45778888888888775432 111 123345666666777777777777777776654 56666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCch-HHHHHHHHHHhccCcHHH-HHHHHHHHhc
Q 018882 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFAE-MELTLVKMLS 126 (349)
Q Consensus 68 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 126 (349)
.-..++...++++.|...|+++++. .|+. ..-+.|+.+-.+.....+ ..++|..|..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6667777777777777777777765 3333 333334444333333322 2455555543
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.49 Score=42.98 Aligned_cols=179 Identities=14% Similarity=0.150 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch--HHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
...-+..+.+...+..|..+-+ ..+..++. .......+.+.+.|++++|...|-+.+.. +.|+ .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 3445666667777777776643 33322221 22333444556789999999888777643 2332 356666
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHH
Q 018882 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQME 223 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 223 (349)
.....+..-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777788888888899988865 66666788999999999888777766544 2211 112345566666666667776
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.+-..... +......++ -..+++++|.+.+..+.
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 66554321 333444443 35678888888776553
No 235
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.32 Score=35.17 Aligned_cols=123 Identities=7% Similarity=-0.010 Sum_probs=51.9
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH-HHHHH--HHHHhccCcHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTL--IDAYGRAKMFA 115 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~ 115 (349)
+.+..++|+.-|..+.+.+.-.-.....-.........|+...|...|++.-.....|-.. -.-.| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 4444555555555555442100011111122233344555555555555554432222211 00111 11233455555
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
+.....+.+...+-+.....-..|.-+-.+.|++..|.+.|.++..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555554443333333333444444455555555555555544
No 236
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.05 E-value=0.28 Score=33.68 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=76.7
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
..-.|..++..++..+..... +..-+|.+|.-....-+-+-..++++.+-+. .|.. ..|+....
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHH
Confidence 345677777788777776653 4445555555444444445555555544332 1221 23334444
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...+-.+ ..+...+...+..+...|+-+...++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333322 1233445556667777888888888888776533 467777778888888888888888888888887
Q ss_pred CCC
Q 018882 303 GCK 305 (349)
Q Consensus 303 ~~~ 305 (349)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 754
No 237
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.01 E-value=0.019 Score=30.54 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhccCCCC
Q 018882 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348 (349)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~p~ 348 (349)
.+++.+...|...|++++|..+++...++.....+...|+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 4566777777777777777777777777777766666664
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.94 E-value=0.68 Score=37.31 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccCcHH---HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 99 VTYNTLIDAYGRAKMFA---EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
.++..++.+|...+..+ +|.++++.+.... +-....+..-+..+.+.++.+.+.+++.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666655433 3444444453332 112334444555555566677777777776665
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.93 E-value=0.69 Score=37.84 Aligned_cols=226 Identities=13% Similarity=0.073 Sum_probs=133.7
Q ss_pred CCCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHcCCChhHHHHHHH----HhhcCCCCCCCHHHHHHHHHHHHhcC
Q 018882 4 KCKQPEKAHELFQAMVDEG--CDANTQSFTALLSAYGRSGLFDKAFSLLE----HMKNTPDCQPDVNTYSILIKSCLKAF 77 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~ 77 (349)
...+.++|+..+.+...+- ......++..+..+.++.|++++++..-- -..+...-..--..|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888777665431 11124567778888889998887765432 22211100112244555666666666
Q ss_pred ChhHHHHHHHHHHhc-CCCC---chHHHHHHHHHHhccCcHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHccCC
Q 018882 78 AFDKVQALLSDMSTQ-GIRP---NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-----CEPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 148 (349)
++.+++.+-..-... |..| .-.....+..+..-.+.++++++.|+...+.. ......++..+-..|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666654443332 2222 11233446677777788999999998876542 12234578888899999999
Q ss_pred HHHHHHHHHHHHh----cCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-chhhHHHHHHHHH
Q 018882 149 IDTMEKCYEKFQS----AGIQPSINTFN-----ILLDSYGKAGHFEKMSAVMEYMQK----YHYSW-TIVTYNIVIDAFG 214 (349)
Q Consensus 149 ~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~ 214 (349)
+++|.-+..+..+ .++..-..-|. .|.-++...|....|.+.-++..+ .|-.+ .......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998776655433 23221111222 234456677887777777666543 34221 2344556778888
Q ss_pred hcCChHHHHHHHHHH
Q 018882 215 RAGDLKQMEYLFRLM 229 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~ 229 (349)
..|+.+.|+.-|+..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 999999988777654
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.56 Score=37.89 Aligned_cols=152 Identities=9% Similarity=-0.027 Sum_probs=109.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH----HHHHHHHHhcCCh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY----SILIKSCLKAFAF 79 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~ 79 (349)
..|+..+|-..++++.+. .|.|..+++.-=.++.-.|+.+.-...++++...- .||...| ....-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999886 57788888888889999999999999998887653 3444333 3344566678999
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018882 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---DCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
++|++.-++..+.+ +-|...-.++...+--.+++.++.++..+-... +--.-..-|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887764 346677778888888889999999887765432 10001111222233455668999999999
Q ss_pred HHH
Q 018882 157 EKF 159 (349)
Q Consensus 157 ~~~ 159 (349)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 873
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.92 E-value=0.79 Score=37.91 Aligned_cols=249 Identities=13% Similarity=0.025 Sum_probs=113.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNT--YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.+.|...-+..-... +-=...+...+...+..|+|+.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 346666666666666542 22221 1122222334555555555555544432 1123455556666666666666
Q ss_pred HHHHHHHHhccC-CCcchh--hHHHHHHHH---HccCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 018882 117 MELTLVKMLSED-CEPDVW--TMNCTLRAF---GNSGQIDTMEKCYEKFQSAGIQPSINT-FNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 117 a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~ 189 (349)
|+++++.-.... +.++.. .-..|+.+- .-..+...|...-.+..+. .|+..- --.-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 666665544332 122211 011111110 0112233344333333322 333221 1223355666667777767
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018882 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+++.+-+..+.|+. +. +....+.|+ .+.+-+++.... .++| +..+...+.++-...|++..|..--+.....
T Consensus 285 ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 76666665444332 21 112233333 333333322211 1122 3344555556666666666665555544432
Q ss_pred CCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 018882 268 DIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQR 302 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 302 (349)
.|....|..|...-... |+-.++...+.+..+.
T Consensus 359 --~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 --APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred --CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 35555665555554333 6666666666665544
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.91 E-value=0.35 Score=41.65 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=42.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHH
Q 018882 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG 258 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (349)
.+.|+++.|.++.++. .+...|..|.....+.|+++-|++.|.+.. -+..|+-.|...|+.+...
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHH
Confidence 3455555554443221 144455555555555555555555555432 1333444444555555555
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
++.+.....|- ++....++.-.|+.++..+++
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 55444444331 222333333445555444444
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.85 E-value=0.13 Score=40.19 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Q 018882 60 QPDVNTYSILIKSCLKA-----FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA 111 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (349)
.-|..+|...+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc
Confidence 45666676666655543 44555666778888888888999999888877543
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.63 Score=35.81 Aligned_cols=19 Identities=5% Similarity=0.016 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 018882 280 VDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~ 298 (349)
|-.|.-..++..|.+.++.
T Consensus 197 ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHhhHHHHHHHHHHhcc
Confidence 3333444444444444444
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.72 E-value=0.041 Score=29.76 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=18.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
++..+...|.+.|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666666667777777777666665
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.70 E-value=0.059 Score=29.14 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
++..+...|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665
No 247
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.64 E-value=0.2 Score=39.70 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhc-----cCCCcchhhHHH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTMNC 138 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 138 (349)
.++..++..+...++++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445556666666667777777777766653 34666667777777777777777766666554 356666665555
Q ss_pred HHHH
Q 018882 139 TLRA 142 (349)
Q Consensus 139 l~~~ 142 (349)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 248
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.61 E-value=1.2 Score=37.67 Aligned_cols=42 Identities=2% Similarity=-0.007 Sum_probs=21.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHH
Q 018882 138 CTLRAFGNSGQIDTMEKCYEKFQSAG----IQPSINTFNILLDSYG 179 (349)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~ 179 (349)
..+.++...|.+.++..+++++...- ..-+..+|+.++-.+.
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 34445555666666665555554432 2245555555444443
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.55 E-value=0.24 Score=39.27 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|...|+...|+..|+.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444555555555555555555555555443 3455555555555555555555555555443
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.97 Score=35.93 Aligned_cols=145 Identities=10% Similarity=0.102 Sum_probs=78.0
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH
Q 018882 72 SCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT 151 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (349)
.....|++..|..+|....... +-+...--.+..+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456667777777666666553 223445556667777777777777777666544222222222222333333333333
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCchhhHHHHHHHHHhcCChH
Q 018882 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY--HYSWTIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 220 (349)
...+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+. +.. |...-..++..+.--|.-+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 33333333332 225556666677777777777777766555433 222 5555666666666655333
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.33 Score=43.99 Aligned_cols=177 Identities=8% Similarity=0.093 Sum_probs=116.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHH----HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTL----RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (349)
....-+..+.+...++-|+.+.+.-. .+..+...+. .-+.+.|++++|...|-+-... +.| ..++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 34556777778888888887766542 2233333333 4456889999999888765543 233 2345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
.-|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++..++.+... .|.. ..-+...+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5566666777777888999998876 67777899999999999999888877654 3321 112445667777777777
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
+|..+-..... +...... .+-..+++++|.+.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 77766655443 2222222 344567788888777644
No 252
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.43 E-value=0.68 Score=33.66 Aligned_cols=131 Identities=12% Similarity=0.121 Sum_probs=56.0
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-CC
Q 018882 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-DI 269 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 269 (349)
++.+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+. +....+.++--.|.+. +
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-
Confidence 334444555555566666666666655543333222 3333333333332222111 1222222222222211 1
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
..+..++..+...|++-+|.++.+..... +......++.+..+.++...--.+++-+++
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12334555566666666666655543221 112223445555555555444444444444
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.37 E-value=0.61 Score=32.75 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=21.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 180 KAGHFEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+.|++++|.+.|+.+...-+. -....--.++.+|.+.+++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444444444444433110 1122333344444444444444444444443
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.22 E-value=0.94 Score=35.53 Aligned_cols=86 Identities=6% Similarity=-0.001 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHhcCC--CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCC--CcchhhHHHHHHHHHccCCHHHH
Q 018882 77 FAFDKVQALLSDMSTQGI--RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMNCTLRAFGNSGQIDTM 152 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 152 (349)
|++..|...|...++... .-....+..|..++...|++++|..+|..+.+.-. +--+..+..+..+..+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 345555555544444311 11122333344444455555555554444443310 00112333344444444444444
Q ss_pred HHHHHHHHhc
Q 018882 153 EKCYEKFQSA 162 (349)
Q Consensus 153 ~~~~~~~~~~ 162 (349)
..+|+++.+.
T Consensus 235 ~atl~qv~k~ 244 (262)
T COG1729 235 CATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 255
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.2 Score=39.91 Aligned_cols=105 Identities=15% Similarity=0.268 Sum_probs=72.2
Q ss_pred CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH
Q 018882 22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC--QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV 99 (349)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 99 (349)
|.+.+..+...++..-....+++++...+-+++..... .|+... .++++.+. .-++++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44555666666666666677888888888887765321 122222 22333333 346778888888778888888999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
+++.+|+.+.+.+++.+|.++...|..+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999888888888887776553
No 256
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.19 E-value=1.7 Score=36.83 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
.+|..+++.-.+..-++.|..+|-++.+.+ +.+++..+++++..++. |+...|.++|+.-... .+.+..-..-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 456667777777777888888888888877 56777788888876654 6777788888775544 22233333455666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (349)
+...++-+.|..+|+..... +..+ ...|..+|..-..-|+...+..+-++|.+. .|-..+.......|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 77788888888888754432 1112 467788888778888888887777777653 34443333333333
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.15 E-value=0.75 Score=32.52 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=19.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3444444444555555555544443 23444455555555443
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.11 E-value=0.77 Score=32.46 Aligned_cols=127 Identities=8% Similarity=0.005 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
...++..+...+........++.+...+. .+....+.++..|++.+ ..+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 35677777778889999999999887764 57888999999998764 3444455542 1233445567788888
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
.+.++++..++..+.. ... .+..+... ++++.|.+++.+- -++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 8888888888876643 222 23333333 7788888877641 267788888877654
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.01 E-value=0.73 Score=31.65 Aligned_cols=91 Identities=10% Similarity=0.001 Sum_probs=43.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCC
Q 018882 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGK 253 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 253 (349)
++...|+.+.|++.|.+....-+. ....||.-.+++.-.|+.++|++=+++..+..-..+. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344556666666666555544322 4555666666666666666665555555443111111 122222223444455
Q ss_pred hhhHHHHHHHHhhCC
Q 018882 254 PEKLGSVLRFIDNSD 268 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~ 268 (349)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555544444
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=94.99 E-value=2 Score=36.67 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+|.++-++..+.+ +-|......+..+....++++.|...|++....+ +....+|....-.+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444443 2244444444444444444555555555554432 2223333333333444555555555555543
Q ss_pred h
Q 018882 161 S 161 (349)
Q Consensus 161 ~ 161 (349)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.94 E-value=0.48 Score=35.08 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH--
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-- 103 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 103 (349)
..+..+...|.+.|+.+.|++.|.++..... .+ -...+-.++......+++..+...+.+....--.+.......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4567788888888888888888888776421 22 234456677777788888888777776654311111111111
Q ss_pred -HHH--HHhccCcHHHHHHHHHHHh
Q 018882 104 -LID--AYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 104 -l~~--~~~~~~~~~~a~~~~~~~~ 125 (349)
... .+...+++..|-+.|-+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234567777777666554
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.93 E-value=0.51 Score=34.96 Aligned_cols=62 Identities=19% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD--VWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666777777777777777777665533322 34455566666666777766666665544
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.91 E-value=1.4 Score=34.35 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=36.0
Q ss_pred HccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 018882 144 GNSGQIDTMEKCYEKFQSAG--IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (349)
.+.|++++|.+.|+.+.... -+-...+--.++-++.+.++++.|+...++..+..+......|-..|.++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 35566666666666665442 11123344455556666666666666666665543332233333334333
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.90 E-value=1.3 Score=34.04 Aligned_cols=224 Identities=13% Similarity=-0.060 Sum_probs=132.5
Q ss_pred cCChhHHHHHHHHHHhcCCC-CchHHHHHHHHHHhccCcHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHccCCHHHHH
Q 018882 76 AFAFDKVQALLSDMSTQGIR-PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666665554322 12456666777777778888777777776642 22444555666666667777777787
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 154 KCYEKFQSAGIQPSINTFNILLD-SYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777777654332 122222223 67777888888888877754221 1123333334444556677777777777776
Q ss_pred hCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 231 SERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 231 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
... .. ....+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+......
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 543 22 3556666667777777777777777776654322 2333334444444556677777777766655
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.89 E-value=1.6 Score=35.13 Aligned_cols=163 Identities=12% Similarity=0.141 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFE---KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
.+...++.+|...+..+ +|.++++.+...... .+..+-.-+..+.+.++.+.+.+.+.+|...- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34566667777666544 455555555443322 34555555666666788888888888887652 21233444444
Q ss_pred HHH---HhcCChhhHHHHHHHHhhCCCCchHH-HHHHH-HHH---HHhcC------CHHHHHHHHHHHHhc-CCCCCHHH
Q 018882 246 RAY---GHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCL-VDA---YGRLK------CFAEMKGVLEVMQQR-GCKPDKVT 310 (349)
Q Consensus 246 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-i~~---~~~~g------~~~~a~~~~~~m~~~-~~~p~~~~ 310 (349)
..+ ... ....+...+..+....+.|... ....+ +.. ..+.+ ..+....+++...+. +.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 332 2344555555554333333332 11111 111 11111 133444444433322 22333333
Q ss_pred HHHHH-------HHHHhcCchhhhHHHHHHH
Q 018882 311 YRTMV-------RAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 311 ~~~l~-------~~~~~~g~~~~a~~~~~~~ 334 (349)
-.++. ..+.+.++++.|.+.++..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 33222 2356678899999888754
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.87 E-value=3.8 Score=39.24 Aligned_cols=135 Identities=14% Similarity=0.110 Sum_probs=75.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN----TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
.+..--+.|.+.+|+.++ .|+.. .|.+....+.....+++|.-.|+..-+. .-.+.+|.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 333334555555555444 33433 3444555556677777777777654321 23456677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.+|+|.+|..+..++.... .--..+-..|+.-+...+++-+|-++..+.... |. ..+..|++...+++|.+
T Consensus 977 ~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlr 1047 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALR 1047 (1265)
T ss_pred HhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHH
Confidence 7888888888887764211 011112255667777788877777777666542 11 23344556666666666
Q ss_pred HHHHH
Q 018882 295 VLEVM 299 (349)
Q Consensus 295 ~~~~m 299 (349)
+....
T Consensus 1048 va~~~ 1052 (1265)
T KOG1920|consen 1048 VASKA 1052 (1265)
T ss_pred HHHhc
Confidence 55433
No 267
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.86 E-value=1.6 Score=34.77 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=33.6
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA-GIQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
.++..+...++..++..+++....++|+..... +...|...|..+|+.....|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 444445555555555555555555555554443 333455555555555555555555555444
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.82 E-value=1.5 Score=34.21 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=28.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
...|.+.|.+..|..-++.|.+. ..+-....+-.+..+|...|-.++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 44555666666666666666544 0111123344445555566665555555444433
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=1.7 Score=34.56 Aligned_cols=146 Identities=12% Similarity=0.114 Sum_probs=84.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3455677777777777777665433 455566677777778888888877777654321122222222334444444444
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCchh
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKN 325 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~ 325 (349)
+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.--|..+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 444444444432 125556666777778888888887766555544 322 4555566666665555333
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.65 E-value=0.11 Score=26.65 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 311 YRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
|..|...|.+.|++++|.++++....+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4445555555555555555555544333
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.31 E-value=3.2 Score=35.84 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+-..+..++-+.|+.++|.+.++++.+.... -+..+...|+.++...+.+.++..++.+..+.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 33345666666777777777777777643221 23445566777777777777777777776543
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.24 E-value=4 Score=36.73 Aligned_cols=244 Identities=11% Similarity=-0.003 Sum_probs=131.3
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHH----H-HHhcCChhHHHHHHHHHHh-------cCCCCchHHHHHHHHHHhc
Q 018882 43 FDKAFSLLEHMKNTPDCQPDVNTYSILIK----S-CLKAFAFDKVQALLSDMST-------QGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 110 (349)
...|.++++.....+ +...-..+.. + ....+|.+.|..++....+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 456888888777664 2332222222 2 3356788889988888876 44 33455667777766
Q ss_pred cC-----cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----h
Q 018882 111 AK-----MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN-SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG----K 180 (349)
Q Consensus 111 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 180 (349)
.. +.+.|..++.+....| .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 43 5677888888888777 5555444333333333 34677899999998888743 22222222222 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH-HHH---Hh----cC
Q 018882 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV-RAY---GH----AG 252 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~~ 252 (349)
..+...|...+.+.-+.| .|...--...+..+.. +.++.+...+..+.+.|... ..+-...+ ... .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhcccccccccccc
Confidence 346788888888888877 2222222222233333 66666666666665554321 11111111 111 01 11
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcC
Q 018882 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL----KCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~ 303 (349)
+.+.+...+......| +......+...|... .+++.|...+......+
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 3444555555544433 334444444444332 24566666666555543
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.19 E-value=0.15 Score=26.10 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
+|+.|...|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999988854
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.17 E-value=2.6 Score=34.28 Aligned_cols=130 Identities=14% Similarity=0.189 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCchhhHHHHHHHHHhcCCh-
Q 018882 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGK--AG----HFEKMSAVMEYMQKYHY---SWTIVTYNIVIDAFGRAGDL- 219 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~- 219 (349)
++...+++.|.+.|+.-+..+|-+....... .. ....|..+++.|++..+ .++-..+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777776666555442222222 11 24567777888877653 2233444444332 33333
Q ss_pred ---HHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 220 ---KQMEYLFRLMRSERIKPSCV--TLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 220 ---~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
+.++.+|+.+.+.|...+.. ..+.++ ++..... ...+..+++.+.+.++++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iL-aL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHIL-ALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 44566777777666544332 222232 2222221 33566777778888877776666655433
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.10 E-value=2.8 Score=34.51 Aligned_cols=229 Identities=10% Similarity=-0.026 Sum_probs=117.4
Q ss_pred HHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHhcC-CCCchHHHHHHHHHHhc
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLSD----MSTQG-IRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 110 (349)
+....+.++|+..|.+....-. ...-..++..+..+.++.|.+++++..--. ..+.. -..--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888888776655311 011224456666777777777665543221 11110 00012334445555555
Q ss_pred cCcHHHHHHHHHHHhcc-CCCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhc
Q 018882 111 AKMFAEMELTLVKMLSE-DCEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-----IQPSINTFNILLDSYGKA 181 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 181 (349)
..++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.- ......++..|-..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554443322 1112 11223345566666777777777777765421 112344677777777777
Q ss_pred CCHHHHHHHHHHHHh----cCCCCch------hhHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCc-HHHHHHHHH
Q 018882 182 GHFEKMSAVMEYMQK----YHYSWTI------VTYNIVIDAFGRAGDLKQMEYLFRLMR----SERIKPS-CVTLCSLVR 246 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~----~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~l~~ 246 (349)
.|.++|.-...+..+ .++. |. ...-.+.-++...|....|.+.-++.. ..|-.+. ......+..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 787777766554432 2221 11 112223344556666666666655543 2332221 223344556
Q ss_pred HHHhcCChhhHHHHHHHHhh
Q 018882 247 AYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~ 266 (349)
.|...|+.+.|+.-++....
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 66677777776666665543
No 276
>PRK11906 transcriptional regulator; Provisional
Probab=94.09 E-value=3.4 Score=35.39 Aligned_cols=146 Identities=14% Similarity=0.052 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 018882 149 IDTMEKCYEKFQSA-GIQPS-INTFNILLDSYGK---------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 149 ~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (349)
.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-+...+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 45688888888722 23343 4445544443332 22355666777777777644 7777777777777788
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-HHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 218 DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-TVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
+++.|...|++....+ +-...+|......+.-.|+.++|.+.++...+..+.-- .......+..|+..+ .+.|.+++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8999999999887754 33345566566666778999999999988776543211 222233344565544 45566655
Q ss_pred H
Q 018882 297 E 297 (349)
Q Consensus 297 ~ 297 (349)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 277
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.93 E-value=3.6 Score=35.05 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHhhCCCCc----hHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhh
Q 018882 254 PEKLGSVLRFIDNSDIML----DTVFFNCLVDA--YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~----~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 327 (349)
+.....+-+.+.+.|+.| +...-|.|..+ +...|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 333444444455666654 33445555444 5568888888766555554 578999999999999999999999
Q ss_pred HHHHHHHH
Q 018882 328 KEFQDLVE 335 (349)
Q Consensus 328 ~~~~~~~~ 335 (349)
..++..+.
T Consensus 515 ~~~l~~LP 522 (549)
T PF07079_consen 515 WEYLQKLP 522 (549)
T ss_pred HHHHHhCC
Confidence 99887653
No 278
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.91 E-value=1.5 Score=30.80 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=7.2
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 018882 142 AFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~ 160 (349)
+|.+.+++++|...+++++
T Consensus 56 ayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 56 AYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3333333333333333333
No 279
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.84 Score=36.56 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH---YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (349)
|.+.+..+...++..-....+++.++..+-+++... ..|+... ...++.+ -.-++++++.++..=++-|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 445555566666665555667777777776665431 1111111 1222222 2335667777777777777778888
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+++.++..+.+.+++..|.++...+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888777777777666543
No 280
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.84 E-value=3.4 Score=34.47 Aligned_cols=290 Identities=13% Similarity=0.108 Sum_probs=172.0
Q ss_pred hHHHHHHHHH--cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCchHH--HH
Q 018882 29 SFTALLSAYG--RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS--CLKAFAFDKVQALLSDMSTQGIRPNTVT--YN 102 (349)
Q Consensus 29 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 102 (349)
.|..|-.++. -.|+-..|.++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|... |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 3555555544 346777777776665432 13455555555543 34468999999999999863 22221 22
Q ss_pred HHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHH--HHHHHHHHHH
Q 018882 103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPSIN--TFNILLDSYG 179 (349)
Q Consensus 103 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~ 179 (349)
.|.-..-+.|..+.|.++-+...... +.-...+...+...+..|+++.|+++++.-.+.. +.++.. .-..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33333456788888888877776543 3335677888888999999999999988766542 233322 1222332211
Q ss_pred ---hcCCHHHHHHHHHHHHhcCCCCchhhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 180 ---KAGHFEKMSAVMEYMQKYHYSWTIVTY-NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 180 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
-..+...|...-.+..+ +.|+..-- -.-..++.+.|+..++-.+++.+-+....| .++...+ ..+.|+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY~--~ar~gd-- 309 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLYV--RARSGD-- 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHHH--HhcCCC--
Confidence 12345555555444444 33443322 233567788999999999999887764444 4333222 334454
Q ss_pred hHHHHHHHHhhC-CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCchhhhHHHHH
Q 018882 256 KLGSVLRFIDNS-DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-STNGMKNHAKEFQD 332 (349)
Q Consensus 256 ~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~ 332 (349)
.+..-++...+. .++| +......+..+-...|++..|..--+...+. .|....|..|.+.- ...|+-.++...+.
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 344433333221 1222 4556666777888889988888777666654 67777777777664 34488777777665
Q ss_pred HH
Q 018882 333 LV 334 (349)
Q Consensus 333 ~~ 334 (349)
+.
T Consensus 388 qa 389 (531)
T COG3898 388 QA 389 (531)
T ss_pred HH
Confidence 44
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.78 E-value=0.082 Score=26.69 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=14.3
Q ss_pred CCChhhHHHHHHHHHcCCChhHHH
Q 018882 24 DANTQSFTALLSAYGRSGLFDKAF 47 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~ 47 (349)
|-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345566666666666666666554
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.77 E-value=1.8 Score=31.13 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=21.9
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.++.+++..++..+.-..+-.|...++..+ .++..|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555554431111122222222 234455555555555554443
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.68 E-value=2 Score=31.31 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.+..+.+.+++|+...+..+++.+.+.|++.....++.. ++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3444455556666666666666666666665544444332 22333333332221111 1222333333333322
Q ss_pred CCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
=...+..++..+...|++-+|+++.++..... ......++.+..+.+|...-..+++-.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00123445555666666666666665542211 111233444444555544444444333
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=2 Score=31.30 Aligned_cols=140 Identities=13% Similarity=0.079 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH-HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchh-hHHH
Q 018882 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW-TMNC 138 (349)
Q Consensus 61 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 138 (349)
.....|...++ +.+.+..++|+.-|.++.+.|..--+. ............|+...|...|+++-.....|-.. -...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 35566766665 456778899999999999987542221 22233455678899999999999998765445433 1111
Q ss_pred H--HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018882 139 T--LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 139 l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
+ .-.+...|.+++...-.+.+...+-+.-...-..|.-+-.+.|++..|...|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2 22356889999998888887766655555566777778889999999999999987644333
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.60 E-value=2.6 Score=32.34 Aligned_cols=227 Identities=15% Similarity=0.026 Sum_probs=154.2
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCchHHHHHHHHHHhccCcHHHHH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
.+....+...+...............+......+...+.+..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666677777666654210113567777788888889999888888877652 23445566777777777888888999
Q ss_pred HHHHHHhccCCCcchhhHHHHHH-HHHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 119 LTLVKMLSEDCEPDVWTMNCTLR-AFGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9998888654333 122223333 78899999999999999865321 1233444444455677889999999999888
Q ss_pred hcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
..........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7643214677788888888888999999999888765321 23444444445556677888888888877654
No 286
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.50 E-value=3 Score=32.81 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHhccCCCcchh---hHHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 112 KMFAEMELTLVKMLSEDCEPDVW---TMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
.+.++|+.-|+++.+.......+ ....++....+.+++++....+.++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45667777777666543222222 23345566666666666666666654
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.47 E-value=0.89 Score=29.27 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
+.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444455555555555555555544444
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.43 E-value=4.1 Score=34.10 Aligned_cols=66 Identities=11% Similarity=-0.034 Sum_probs=50.4
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
....+|..++..+.+.|.++.|...+..+...+... .+.....-.+..-..|+...|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888999999999999999999887643111 334455556677788999999999988776
No 289
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=3 Score=32.36 Aligned_cols=90 Identities=18% Similarity=0.119 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCcHHHHH
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKY----HYSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RIKPSCVTLC 242 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 242 (349)
+...-+.+.+...+++|-..+.+-... .--++ -..|-..|-.+....++..|...++.--+. .-+-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 344445556666666665544332111 00111 123444455555666788888888764322 1233456677
Q ss_pred HHHHHHHhcCChhhHHHHH
Q 018882 243 SLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~ 261 (349)
.|+.+| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777766 456776665554
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.29 E-value=2.2 Score=30.69 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 180 KAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+.++.+++..++..+.-..+. +...++. ...+...|+|.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhc
Confidence 445666666666665543211 1112222 2234456666666666666544
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.18 E-value=3.9 Score=33.23 Aligned_cols=130 Identities=13% Similarity=0.245 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhc--c----CcHHHHHHHHHHHhccCC---CcchhhHHHHHHHHHccCCH-
Q 018882 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGR--A----KMFAEMELTLVKMLSEDC---EPDVWTMNCTLRAFGNSGQI- 149 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~- 149 (349)
++...+++.|.+.|+.-+..+|-+....... . .....+..+|+.|.+... .++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556677888888887777666553333222 1 135567777777776632 2333344444332 33332
Q ss_pred ---HHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 018882 150 ---DTMEKCYEKFQSAGIQPSI--NTFNILLDSYGKAGH--FEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 150 ---~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
+.++.+|+.+.+.|+..+. ...+.++........ ...+.++++.+.+.++++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4456667777766654432 223333322222211 3356666777777777666666655543
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.96 E-value=0.3 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+|..+...|...|++++|...|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.93 E-value=3.2 Score=31.56 Aligned_cols=186 Identities=14% Similarity=0.076 Sum_probs=102.7
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
|-..|-..-|.-=|.+..... |.-...||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHh
Confidence 334455555555555555442 3345678888888888999999999999888764332222223222 3345688888
Q ss_pred HHHHHHHHhccCC-CcchhhHHHHHHHHHccCCHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 117 MELTLVKMLSEDC-EPDVWTMNCTLRAFGNSGQIDTMEKCY-EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 117 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
|.+-+.+..+.+. .|-...|-.+. ...-++.+|..-+ ++... .|..-|...|-.+.- |+.. ...+++.+
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~ 222 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERL 222 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHH
Confidence 8887777766541 22222232222 2334555555433 33332 244444444333322 1111 11222222
Q ss_pred HhcCC------CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018882 195 QKYHY------SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 195 ~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
....- ..-..||--+...+...|+.++|..+|+-....++
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22110 11257888888889999999999999988876543
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.83 E-value=1.4 Score=28.37 Aligned_cols=44 Identities=9% Similarity=0.239 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
+.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444444445555555555556666666666666666655554
No 295
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.69 E-value=1.2 Score=29.04 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=9.9
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018882 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
+.|++....+.+++|.+.+++..|.++++-
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~ 70 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEG 70 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333333333333333333333333333
No 296
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.68 E-value=2.7 Score=31.54 Aligned_cols=79 Identities=6% Similarity=-0.067 Sum_probs=54.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHccCCH
Q 018882 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---DCEPDVWTMNCTLRAFGNSGQI 149 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 149 (349)
+.+.|+ +.|...|-.+...+.--++.....|...|. ..+.+++.+++.+..+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 567777777777665556666666666665 56677788877776643 3356778888888888888888
Q ss_pred HHHH
Q 018882 150 DTME 153 (349)
Q Consensus 150 ~~a~ 153 (349)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8764
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.67 E-value=1.9 Score=28.19 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=26.1
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666666666665544
No 298
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.58 E-value=6.4 Score=34.10 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
.+..++.+.|+.++|++.++++.+.... -.......|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455566666666666666543211 123344555666666666666666665543
No 299
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.35 E-value=8.2 Score=34.79 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCCChHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHcCC-----ChhHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 018882 3 GKCKQPEKAHELFQAMVD-------EGCDANTQSFTALLSAYGRSG-----LFDKAFSLLEHMKNTPDCQPDVNTYSILI 70 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 70 (349)
+...|++.|+..|+...+ .| .+.....+..+|.+.. +.+.|+.++.+....+ .|+.......+
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 345666666666666655 33 3334455555555532 4455666666665553 34444333222
Q ss_pred HHHHh-cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh----ccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc
Q 018882 71 KSCLK-AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG----RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145 (349)
Q Consensus 71 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (349)
.-... ..+...|.++|....+.|.. ..+-.+..+|. ...+...|..++.+..+.| .|....-...+..+..
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc
Confidence 22222 23455666666666666532 22222222221 1234556666666666555 2222222222222223
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 018882 146 SGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~ 163 (349)
+.++.+.-.+..+.+.|
T Consensus 411 -~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELG 427 (552)
T ss_pred -ccccHHHHHHHHHHHhh
Confidence 44444444444444443
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.25 E-value=0.27 Score=24.53 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=15.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
+|..+..++...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555555566666666666666555543
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.15 E-value=0.29 Score=24.62 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=8.6
Q ss_pred chhhHHHHHHHHHhcCChHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a 222 (349)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 334444444444444444433
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.12 E-value=0.58 Score=23.16 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.|..+...+...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.06 E-value=12 Score=36.15 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
|.+....+.....+++|.-.|+..-+ ....+.+|...|++.+|..+...+....-. -..+-..|+.-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHH
Confidence 34444445566777777777765421 223467788888888888887776542111 11222567777888
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018882 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~ 302 (349)
.+++-+|-+++.+....
T Consensus 1012 ~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred cccchhHHHHHHHHhcC
Confidence 88888888887776643
No 304
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.04 E-value=9.5 Score=34.88 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH-HHhcCC-----------HHHHHHHHHHHHhcC-----CC-
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA-YGRLKC-----------FAEMKGVLEVMQQRG-----CK- 305 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~-----------~~~a~~~~~~m~~~~-----~~- 305 (349)
...-+...|+++.|..+|..+.+.. .-....|.++.- ...... ...|..+.+.....+ +.
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 3445667788888888887766432 112233333222 222222 334555555444331 11
Q ss_pred CCHHHHHHHHHH-----HHhcCchhhhHHHHHHH
Q 018882 306 PDKVTYRTMVRA-----YSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 306 p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~ 334 (349)
.+..|+..|+.. +...|+++.|.+.++.+
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 124555555543 46788888888766654
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.88 E-value=0.49 Score=23.46 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
..|..+...+...|++++|.+.+++..++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45778888999999999999999999887653
No 306
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.80 E-value=8.8 Score=33.97 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=63.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-cCCChhHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCChhH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG-RSGLFDKAFSLLEHMKNTPDCQ-PDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.|..+.+.++|++-++. ++.+...|......+. ..|+.+.....|+.....-|.. .....|...|..-..++++..
T Consensus 91 klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 457788889999988874 6777777877666544 4577888888888887654422 234557777777777888888
Q ss_pred HHHHHHHHHhc
Q 018882 82 VQALLSDMSTQ 92 (349)
Q Consensus 82 a~~~~~~~~~~ 92 (349)
...++++.++.
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 88888888764
No 307
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.37 E-value=3.9 Score=29.03 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.++++++..+++.+.-..+-.+...++...+ +...|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5556666666665554422122333333333 44566666666666666554
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.00 E-value=0.77 Score=24.02 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+++.+...|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56788888899999999999888887653
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.81 E-value=3.8 Score=30.78 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC---CCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS---DIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+.|...|-.+...+.--++.....+.. |....+.+++..++-...+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444443332223333333322 22344455555555443321 2134455555555555555555444
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.50 E-value=4.4 Score=30.45 Aligned_cols=90 Identities=9% Similarity=0.011 Sum_probs=66.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
.-+...|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-....++.++. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 34678899999999999988753 222 234555556778888999998888888877642 33344444667888
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018882 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~ 302 (349)
...+++|+.=|+.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999887
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.41 E-value=11 Score=32.58 Aligned_cols=95 Identities=8% Similarity=0.019 Sum_probs=61.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
......+...|+++.+.+.+...... +.....+...+++...+.|++++|...-.-|....+. ++..........-..
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l 404 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADAL 404 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHH
Confidence 33444566778888887777665543 2334556777788888888888888887777766554 444444433334455
Q ss_pred CChHHHHHHHHHHHhCC
Q 018882 217 GDLKQMEYLFRLMRSER 233 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~ 233 (349)
|-++++...|+++...+
T Consensus 405 ~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 405 QLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHHhccC
Confidence 66778888887776543
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.41 E-value=0.93 Score=22.44 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 310 TYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+|..+...|...|+++.|.+.++...++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555556666666666666666555544
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.29 E-value=5 Score=28.49 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcCCChhHHHHHHHHhhcCC
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQ-SFTALLSAYGRSGLFDKAFSLLEHMKNTP 57 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 57 (349)
.++++++..+++.|.-. .|+.. .-..-...+...|++.+|+.+|+.+.+..
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 57788899999988765 45432 22333445778999999999999998763
No 314
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.20 E-value=15 Score=33.82 Aligned_cols=252 Identities=9% Similarity=-0.042 Sum_probs=115.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018882 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 67 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
...+..+.+.+++.....++. . .+.+...-.....+....|+.++|......+=..| ......+..++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 344555566667766655221 1 13455555666777778888777776666665544 33455677777777765
Q ss_pred CCHHHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 147 GQIDTME--KCYEKFQSAGIQPSINTFNILLDSYGK------------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 147 ~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
|...... +=+..+...| +...-..+...+.. ..+...+...+.. .+|+...-..++.+
T Consensus 177 g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~ 248 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVA 248 (644)
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHH
Confidence 5543322 1122222222 22222222221100 0011111111110 11222111111111
Q ss_pred HH--hcCChHHHHHHHHHHHhCC-CCCcH--HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 018882 213 FG--RAGDLKQMEYLFRLMRSER-IKPSC--VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 213 ~~--~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
+. ...+.+.|..++....... ..+.. .+...+.......+..+++...++...... .+......-+..-.+.+
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHcc
Confidence 11 2345577777777653332 22211 223333333333322344555555443322 23334444455555777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 288 CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 288 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
+++.+...+..|.... .-...-.--+.+++...|+.++|..+++.+.
T Consensus 327 dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 327 DRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777777664432 1123333445556566777777777776653
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.96 E-value=12 Score=32.35 Aligned_cols=90 Identities=9% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHH
Q 018882 36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (349)
.+...|+++.+...+......- .....+...+++..-+.++++.|..+-.-|....+. ++.......-..-..|-++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~--~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKII--GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhh--cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 3445677777766665554332 234455566666667777777777776666665444 3333332222333345566
Q ss_pred HHHHHHHHHhccC
Q 018882 116 EMELTLVKMLSED 128 (349)
Q Consensus 116 ~a~~~~~~~~~~~ 128 (349)
++.-.|+++....
T Consensus 409 ~~~~~wk~~~~~~ 421 (831)
T PRK15180 409 KSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccC
Confidence 7776676666543
No 316
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.72 E-value=9.2 Score=30.67 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=40.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
++...+.|...|.+.+|.++.+...... +.+...+..++..+...|+--.+..-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455566777788888887777777664 556777777777788777766666666555
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.57 E-value=11 Score=31.46 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
....+|..++..+.+.|.++.|...+..+...+... .+...-.-+..+-..|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999999988754222 3444455566777889999999999888763
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.52 E-value=0.23 Score=35.33 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=59.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.... .-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 45667777788888888888888766566677888888888888777777777662221 22235677778888
Q ss_pred CHHHHHHHHHHHHh
Q 018882 288 CFAEMKGVLEVMQQ 301 (349)
Q Consensus 288 ~~~~a~~~~~~m~~ 301 (349)
.++++.-++.++..
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 88888887776543
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.07 E-value=7.8 Score=28.99 Aligned_cols=55 Identities=13% Similarity=-0.021 Sum_probs=24.5
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+.....|.++.|...++...+.+. .......-...+...|+-++|+.-|+.....
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444555555555444443332 2222333344445555555555555544444
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.96 E-value=5.7 Score=35.23 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=46.1
Q ss_pred ccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018882 110 RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555555544432 233455566666666666666655554432 2334444455555554444
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
+-....+.|.. +.. .-++...|+++++.+++.
T Consensus 714 la~~~~~~g~~-N~A-----F~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN-NLA-----FLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc-chH-----HHHHHHcCCHHHHHHHHH
Confidence 44444444322 211 112334555555555554
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.87 E-value=4.4 Score=30.91 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCchHHHHHHHHH
Q 018882 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDA 107 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 107 (349)
.+..++.+.+.+++.+++...+.-.+.. +.|...-..+++.++-.|++++|..-++-.-.. ...+-..+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444556666777777777766555542 445555666777777777777776655554443 122334455555544
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.73 E-value=1.3 Score=23.86 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 323
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.64 E-value=9.1 Score=30.47 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=47.0
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG----- 179 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 179 (349)
|.+++..++|.+++...-+..+..-+....+...-|-.|.+.+++..+.++-.......-.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566666677777666555554432222233344455556677777666666665554322223333555555443
Q ss_pred hcCCHHHHHHHH
Q 018882 180 KAGHFEKMSAVM 191 (349)
Q Consensus 180 ~~~~~~~a~~~~ 191 (349)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356666666665
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.58 E-value=0.2 Score=35.58 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=41.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4444555556666666666665544445566666666666665555555554411 112223344444555555
Q ss_pred HHHHHHHHH
Q 018882 220 KQMEYLFRL 228 (349)
Q Consensus 220 ~~a~~~~~~ 228 (349)
+++..++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555444
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.49 E-value=8.7 Score=28.77 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=54.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
+...+...++++.|..-++......... ....--.|.+.....|.+++|+.+++...+.+. .......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455667777777777777655432111 112223355666677777777777776665432 223333444567777
Q ss_pred CchhhhHHHHHHHHHHh
Q 018882 322 GMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 322 g~~~~a~~~~~~~~~~~ 338 (349)
|+.++|+..|+...+..
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777766664
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.88 E-value=0.42 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=12.1
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcC
Q 018882 33 LLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
+..++.+.|++++|.+.|+.+...
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444455555555555555443
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.63 E-value=23 Score=32.56 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhc-
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER-IKPSCVTLCSLVRAYGHA- 251 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~- 251 (349)
....+.-.|+++.|++.+-. ......+.+++...+..+.-.+-.+... ..+.... -.|...-+..+|..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34455667888888888766 1122334555544444332221111111 2222110 011124566677666653
Q ss_pred --CChhhHHHHHHHHhhC
Q 018882 252 --GKPEKLGSVLRFIDNS 267 (349)
Q Consensus 252 --~~~~~a~~~~~~~~~~ 267 (349)
.++..|.+.+-.+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 4566666666555443
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.56 E-value=1.3 Score=21.54 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555556666666666655544
No 329
>PRK09687 putative lyase; Provisional
Probab=87.51 E-value=14 Score=29.94 Aligned_cols=235 Identities=12% Similarity=-0.001 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH----HHHHHHHHHHhccCCCcchhh
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF----AEMELTLVKMLSEDCEPDVWT 135 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 135 (349)
.+|.......+.++...|. ..+...+..+... +|...-...+.++...|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3556666666666666664 3333344444433 3555555566666666652 4566666666433 344444
Q ss_pred HHHHHHHHHccCCH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 136 MNCTLRAFGNSGQI-----DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 136 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 44555555444321 122233322222 3355666667777777776 4455555555542 3444555555
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 018882 211 DAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 211 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.++.. +...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChh-HHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555543 23456666665553 456667777778888888754 444444444432 2 234577778888885
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 290 AEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 290 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 319 (349)
+|...+..+.+. .||...-...+.+|.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 577778877764 346666666665554
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.43 E-value=2.2 Score=20.98 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888887664
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.15 E-value=7.1 Score=29.83 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=22.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHH
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 122 (349)
++.+.+.+..++++...++-.+.. +.|..+-..++..++-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 344444444444444444433331 2233344444444444555554444333
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.13 E-value=1.1 Score=20.73 Aligned_cols=18 Identities=22% Similarity=0.004 Sum_probs=7.9
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 018882 279 LVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~ 296 (349)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 333
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.01 E-value=14 Score=29.63 Aligned_cols=85 Identities=6% Similarity=-0.045 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhcCCCCC
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV-----MQQRGCKPD 307 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~ 307 (349)
-.++..+...+++.++..+++....++++..... +...|...|..+|+.....|+..-..++.++ +.+.|+..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 3555566666666666666766666666665443 4445666666677776777766666555543 233445555
Q ss_pred HHHHHHHHHHH
Q 018882 308 KVTYRTMVRAY 318 (349)
Q Consensus 308 ~~~~~~l~~~~ 318 (349)
...-..+-+.+
T Consensus 278 ~~L~~~L~~LF 288 (292)
T PF13929_consen 278 DELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHHH
Confidence 55444444433
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.87 E-value=18 Score=32.37 Aligned_cols=101 Identities=21% Similarity=0.136 Sum_probs=68.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
..+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 346677777777655432 566788888888888888888888877543 44566667777777765
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
..+-....+.|. .| .-.-+|...|+++++.+++..-
T Consensus 712 ~~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 555555665553 22 2334566788888888877543
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.84 E-value=52 Score=34.96 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=73.8
Q ss_pred CCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 5 CKQPEKAHELFQAMVDEGC--DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
++.+.+|+..++.-..... .....-+..+...|+..++++...-+...-.. .|+. + .-+......|+++.|
T Consensus 1396 c~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl--~-~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1396 CKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL--Y-QQILEHEASGNWADA 1468 (2382)
T ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH--H-HHHHHHHhhccHHHH
Confidence 4555666666665211000 01122233333467777777766666553111 1222 2 223345566788888
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhh-HHHHHHHHHccCCHHHHHHHHH
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWT-MNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
...|+.+.+.+ ++...+++.++......+.++.++...+-..... .+.... ++.-..+--+.++++.......
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88888887764 3346667777766666677766665444443322 222222 2223334456666666555543
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.43 E-value=11 Score=25.98 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
++.+...++.|++.....-++++-+.+++..|.++|+-++.
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555555554443
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.12 E-value=3.1 Score=22.47 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=4.6
Q ss_pred ccCCHHHHHHHHH
Q 018882 145 NSGQIDTMEKCYE 157 (349)
Q Consensus 145 ~~~~~~~a~~~~~ 157 (349)
..|+.+.|.++++
T Consensus 11 e~Gd~e~Ar~lL~ 23 (44)
T TIGR03504 11 EMGDLEGARELLE 23 (44)
T ss_pred HcCChHHHHHHHH
Confidence 3333333333333
No 338
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.76 E-value=32 Score=30.74 Aligned_cols=122 Identities=13% Similarity=0.044 Sum_probs=73.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCL 279 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 279 (349)
+..+|+.-+..-...|+.+.+.-++++..-- +..-...|-..+.-....|+.+.|..++....+--.+ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567777777778888888888888776521 1122344555555555568888777777665543332 333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCchhhhH
Q 018882 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT-YRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~ 328 (349)
+ .-..|+++.|..+++.+...- |+... -..-+....+.|..+.+.
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 2 234578888999998888763 44332 222334456667777666
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.23 E-value=2.6 Score=34.43 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=60.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.-|.+.|.+++|+++|....... +-+..++..-..+|.+..++..|+.-.......+- .-...|+.-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 45889999999999998876543 33788888888999999998888776666655331 12223333333333344555
Q ss_pred HHHHHHHHHHhcCCCCCHH
Q 018882 291 EMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 291 ~a~~~~~~m~~~~~~p~~~ 309 (349)
+|.+=++...+. .|+..
T Consensus 183 EAKkD~E~vL~L--EP~~~ 199 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPKNI 199 (536)
T ss_pred HHHHhHHHHHhh--CcccH
Confidence 555555555443 55533
No 340
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.16 E-value=14 Score=26.25 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHhccCc-HHHHHHHHHHHhccCCCcchhhHHHHHHHHHc
Q 018882 97 NTVTYNTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (349)
+...|+.++.+..+... ---+..+|.-+.+.+.+++..-|..++.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33445555554444333 22233444444444444445555555554443
No 341
>PF13934 ELYS: Nuclear pore complex assembly
Probab=82.64 E-value=21 Score=27.82 Aligned_cols=103 Identities=13% Similarity=0.052 Sum_probs=59.9
Q ss_pred HHHHHHHH--HcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018882 30 FTALLSAY--GRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 30 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
|...++++ ...+++++|.+.+-.- .+.|+-. .-++.++...|+.+.|..+++...-.. .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP----SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC----CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 45555553 4567788888877322 2223222 247777777899998888887654321 122333333444
Q ss_pred HhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Q 018882 108 YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144 (349)
Q Consensus 108 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (349)
..++.+.+|...-+...+.. ....+..++..+.
T Consensus 151 -La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 56688888888777766532 1334555555554
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.58 E-value=17 Score=26.87 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=5.1
Q ss_pred CCCHHHHHHHHHH
Q 018882 305 KPDKVTYRTMVRA 317 (349)
Q Consensus 305 ~p~~~~~~~l~~~ 317 (349)
.|+..+|+.-+..
T Consensus 110 ~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 DPNNELYRKSLEM 122 (186)
T ss_dssp -TT-HHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 3444444444443
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.54 E-value=34 Score=30.14 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=87.6
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 018882 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
|.....+++..+..+-.+.-++.+..+|...| -+...|..++.+|..+ ..+.-..+++++.+..+. |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445556666666666666666666666654 2555566666666666 455566666666665544 4444444444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHhcCChhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHh
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKP-----SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 285 (349)
.|-+ ++.+.+..+|..+...-++. -...|..+.... ..+.+....+...+.. .|...-...+..+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 56666666666554332110 112333333211 2344555555444432 2333334455555566666
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 018882 286 LKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~~ 303 (349)
..++.+|++++..+.+.+
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 777777777776665553
No 344
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.34 E-value=13 Score=25.58 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=13.3
Q ss_pred CCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
++.|+......-+++|.+.+++..|.++|+-+
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.24 E-value=24 Score=28.25 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=63.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH-
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG- 214 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 214 (349)
...=|.+++..+++.++....-+--+.--+....+...-|-.|.+.+++..+.++-..-....-.-+...|..++..|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3445788899999999887765544432233445556666778999999999988877765433334555777776665
Q ss_pred ----hcCChHHHHHHH
Q 018882 215 ----RAGDLKQMEYLF 226 (349)
Q Consensus 215 ----~~~~~~~a~~~~ 226 (349)
-.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 469999999887
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.74 E-value=14 Score=30.37 Aligned_cols=92 Identities=12% Similarity=-0.051 Sum_probs=63.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+-|.+.|.+++|+..|.......+. +++++..-..+|.+...+..|+.=....+..+ ..-...|+.-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 35689999999999999887765422 88888888999999999888877666655432 12233444444444455666
Q ss_pred hhHHHHHHHHhhCC
Q 018882 255 EKLGSVLRFIDNSD 268 (349)
Q Consensus 255 ~~a~~~~~~~~~~~ 268 (349)
.+|.+-++...+..
T Consensus 182 ~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 182 MEAKKDCETVLALE 195 (536)
T ss_pred HHHHHhHHHHHhhC
Confidence 66666666666543
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.73 E-value=10 Score=23.58 Aligned_cols=46 Identities=7% Similarity=-0.067 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCchhhhHHH
Q 018882 285 RLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
..++.++|+..|....+.-..|. -.++..++.+|...|++.++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666665555422221 23455556666666666555554
No 348
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.51 E-value=28 Score=28.55 Aligned_cols=112 Identities=11% Similarity=-0.018 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCcHHHHHHHHHHH-HhcCChhhHHHHHHHHhhCCCCchH----H
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRS----ERIKPSCVTLCSLVRAY-GHAGKPEKLGSVLRFIDNSDIMLDT----V 274 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~ 274 (349)
..+-.....||+.|+.+.|.+.++...+ .|.+.|...+..-+..+ ....-..+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4445555566666666666666554432 24444443332222111 1111123333333444444443332 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 317 (349)
+|..+ .++...++.+|..+|-+....=-.-...+|..++.-
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Y 225 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRY 225 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcccccceecccHHHHHHH
Confidence 33322 233445566666665554433111223344444443
No 349
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.13 E-value=3.1 Score=19.40 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=15.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKN 55 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 55 (349)
+|..+...+...|+++.|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555566666666666655544
No 350
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=80.98 E-value=14 Score=24.61 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=42.5
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH
Q 018882 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
...++|..+.+.+...++ -...+--+.+..+.+.|+++.| +..- .....||...|-.|- -.+.|-.+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A---Ll~~-~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA---LLLP-QCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH---HHHH-TTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH---HHhc-ccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 346677777777666531 2222333444556677777777 1111 122355666655443 3356666666666
Q ss_pred HHHHhccCCCcchhhH
Q 018882 121 LVKMLSEDCEPDVWTM 136 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (349)
+.++..+| .|....|
T Consensus 92 l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 92 LTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHCT-S-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66666555 3433333
No 351
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=80.84 E-value=16 Score=27.07 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=10.5
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 018882 72 SCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~ 91 (349)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555544
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.39 E-value=21 Score=26.44 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHcCCC-------hhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhc
Q 018882 8 PEKAHELFQAMVDEGCDANTQSFTALLSA---YGRSGL-------FDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKA 76 (349)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 76 (349)
++.|.+..+.-...+ |.|...++.-..+ +++..+ +++|+.-|++.... .|+ ..++-.+..++...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHH
Confidence 455666666544443 4455544433333 322222 33445555555544 344 35555555555443
Q ss_pred C----C-------hhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018882 77 F----A-------FDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 77 ~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
+ + +++|...|++.... .|+..+|+.-+...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 2 2 34444455544443 56777777666655
No 353
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=80.14 E-value=5.9 Score=23.30 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 307 DKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
|..-.-.+|.+|...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455566666666666666555443
No 354
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.99 E-value=15 Score=27.67 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=32.0
Q ss_pred hcCChhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 250 HAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...+.+......+.+.+ ....|++.+|..++.++...|+.++|.++.+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444333333222 123467777777777777777777777777777765
No 355
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.88 E-value=8.2 Score=25.00 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=25.9
Q ss_pred CCCChHHHHHHHHHHHHc----CCCCC----hhhHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018882 4 KCKQPEKAHELFQAMVDE----GCDAN----TQSFTALLSAYGRSGLFDKAFSLLEHMKN 55 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 55 (349)
+.|++..|.+.+.+..+. +.... ....-.+...+...|++++|...+++..+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777775555444332 21110 11222234445566777777766666554
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.68 E-value=16 Score=24.00 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=24.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
+..+.+.|++++|..+.+.+ ..||...|-.|-. .+.|..+.+...+..+..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34445555555555544433 2445554444332 23444444444444444444
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.58 E-value=34 Score=27.70 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhcc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAM 344 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 344 (349)
+++.....|..+|.+.+|.++-++....+ +.+...+..++..+...|+--.+.+-++.+.+.-+.-.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi 349 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGI 349 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCC
Confidence 44555666777777777777777766653 2356666777777777777767776666666555444433
No 358
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.54 E-value=25 Score=26.17 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=22.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 018882 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
+..|.+.|.+++|.+++++.... |+......-+....+.++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 44566677777777777766653 344444444444444443
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.69 E-value=12 Score=28.16 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=24.2
Q ss_pred CCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.|++.+|..++.++...|+.++|.+...++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577777777777777777777777777776644
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=77.51 E-value=9.8 Score=20.96 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=20.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 284 GRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445555666666666766666666666655543
No 361
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.14 E-value=61 Score=29.88 Aligned_cols=184 Identities=14% Similarity=0.118 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHH-cCCCCC--hhhHHHHHHHHH-cCCChhHHHHHHHHhhcCCCCCCCHH-----HHHHHHHHHHhcCCh
Q 018882 9 EKAHELFQAMVD-EGCDAN--TQSFTALLSAYG-RSGLFDKAFSLLEHMKNTPDCQPDVN-----TYSILIKSCLKAFAF 79 (349)
Q Consensus 9 ~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~ 79 (349)
..|++.++.+.+ ...+|. ..++-.+...+. ...+++.|...+++...... .++.. +-..++..+.+.+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345666776663 333443 334555666655 67889999999998755422 22222 223445555555554
Q ss_pred hHHHHHHHHHHhc----CCCCchHHHHHH-HHHHhccCcHHHHHHHHHHHhccC---CCcchhhHHHHHHHHH--ccCCH
Q 018882 80 DKVQALLSDMSTQ----GIRPNTVTYNTL-IDAYGRAKMFAEMELTLVKMLSED---CEPDVWTMNCTLRAFG--NSGQI 149 (349)
Q Consensus 80 ~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~ 149 (349)
. |...+++.++. +..+-...|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 4 88888887664 122223334444 333333478999999988876542 2444555555555543 45556
Q ss_pred HHHHHHHHHHHhcC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 018882 150 DTMEKCYEKFQSAG---------IQPSINTFNILLDSYG--KAGHFEKMSAVMEYM 194 (349)
Q Consensus 150 ~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 194 (349)
+++.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777776664322 1345666777766554 566766766665554
No 362
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.87 E-value=51 Score=28.90 Aligned_cols=108 Identities=6% Similarity=-0.084 Sum_probs=61.8
Q ss_pred HHHhcCChHHHHHHHHHHH---hCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhh-------CCCCch----
Q 018882 212 AFGRAGDLKQMEYLFRLMR---SERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDN-------SDIMLD---- 272 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~---- 272 (349)
.+.-.|++.+|.+++...- +.|...+ ...|+.+.-.+.+.|.+..+..+|..... .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445677777777664431 1121111 12234444444555555555555544432 243332
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 273 -------TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 273 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
..+|| ..-.|...|++-.|.+.|.+.... +.-++..|-.+..+|...
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23444 345677889999998888887765 445888999999888653
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.23 E-value=11 Score=23.38 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=28.0
Q ss_pred hcCChhhHHHHHHHHhhCCCCch--HHHHHHHHHHHHhcCCHHHHHHH
Q 018882 250 HAGKPEKLGSVLRFIDNSDIMLD--TVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
..++.++|+..|....+....+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777776655433222 23556667777777777776654
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.07 E-value=19 Score=23.63 Aligned_cols=86 Identities=17% Similarity=0.310 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHH--HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 7 QPEKAHELFQAMVDEGCDANTQSFTALL--SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.-++|.-+-+.+...+ +..-...+| ..+...|++++|..+.+.. ..||...|..+-. .+.|-.+++..
T Consensus 20 cHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 20 CHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHH
Confidence 3467777777776653 222233333 4588999999999987765 2699998877654 47788888888
Q ss_pred HHHHHHhcCCCCchHHHHH
Q 018882 85 LLSDMSTQGIRPNTVTYNT 103 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ 103 (349)
-+.+|...| .|....|..
T Consensus 90 rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHHhCC-CHHHHHHHH
Confidence 888888876 445555543
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.99 E-value=17 Score=23.07 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=29.9
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhh
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 327 (349)
.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| +..|..++.++...|..+-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 344444444443 233333333322234455666666666655 42 23355555555555554433
No 366
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.92 E-value=24 Score=25.19 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018882 192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
..+.+.|++++. --..++..+...++.-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344455554332 2334555555555556667777776666555555554444555555543
No 367
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.81 E-value=11 Score=20.74 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=20.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018882 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455566666666666666666666666655543
No 368
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=75.54 E-value=10 Score=30.65 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHH
Q 018882 59 CQPDVNT-YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN 102 (349)
Q Consensus 59 ~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (349)
+.||..+ |+..|....+.||+++|+.++++..+.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3456555 5688888899999999999999999888764444443
No 369
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.28 E-value=7.9 Score=22.77 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=13.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhh
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMK 54 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (349)
-.-.++.++...|++++|.+..+.+.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445555555566665555555543
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.14 E-value=25 Score=31.47 Aligned_cols=90 Identities=14% Similarity=0.019 Sum_probs=59.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+...|+...|...+.........-.......|.+...+.|....|-.++....... ...+-++..+.++|....+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34467777787777766543222222344455666666677777777777666544 23556677788888888889999
Q ss_pred HHHHHHHHhcC
Q 018882 293 KGVLEVMQQRG 303 (349)
Q Consensus 293 ~~~~~~m~~~~ 303 (349)
++.|++..+..
T Consensus 696 ~~~~~~a~~~~ 706 (886)
T KOG4507|consen 696 LEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHhcC
Confidence 99888887763
No 371
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.01 E-value=36 Score=26.24 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=105.0
Q ss_pred CChhHHHHHHHHHHhcCCCC-chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHH
Q 018882 77 FAFDKVQALLSDMSTQGIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKC 155 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (349)
|-+..|.--|.+.... .| -+.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|+++-|.+=
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHH
Confidence 3334444444444443 33 456888888888999999999999999987653333333333232 3456888888877
Q ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 156 YEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVM-EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 156 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
+.+.-+... .|=...|-.+.. ..-++.+|..-+ ++.... |..-|...|-.+.- |++. ...+++++.+..
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 776665532 222233333322 334566666544 333332 44444443333221 2211 122333332211
Q ss_pred C------CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018882 234 I------KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 234 ~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
. ..-..||.-+.+.+...|+.++|..+|+.....++
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 0 12247889999999999999999999999887654
No 372
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.53 E-value=28 Score=24.78 Aligned_cols=81 Identities=12% Similarity=0.230 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCchhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHY-----SWTIVTYNIVIDAFGRAGD-LKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
.+.++......+++.....+++.+..... ..+...|++++.+..+..- --.+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555666666666655532110 1245566666666654443 23355566666665666666777777
Q ss_pred HHHHHhc
Q 018882 245 VRAYGHA 251 (349)
Q Consensus 245 ~~~~~~~ 251 (349)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7666554
No 373
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=74.35 E-value=55 Score=28.00 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCchHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
.--|++.+.-.|+.+...+.++.|.+. |..|...+-.-+.-+|.-.+++.+|.+.|-...
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 344567777788877777788777665 333332222345567777888888888887665
No 374
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=73.76 E-value=48 Score=27.05 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhcCCHHH
Q 018882 275 FFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~ 291 (349)
.|..|+.+++..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45555555555555443
No 375
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.79 E-value=12 Score=30.25 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTY 311 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 311 (349)
.|+.-|..-.+.||+++|+.++++.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4567778888888888888888888887765444444
No 376
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.16 E-value=64 Score=27.83 Aligned_cols=211 Identities=12% Similarity=0.013 Sum_probs=98.1
Q ss_pred HHHcCCChhHHHHHHHHhhcCCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcc
Q 018882 36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNT--YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV--TYNTLIDAYGRA 111 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 111 (349)
..++.|+.+-+..+++ . |..|+... ..+.+..++..|+.+-+ +.+.+.|..|+.. .....+...+..
T Consensus 8 ~A~~~g~~~iv~~Ll~----~-g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 8 DAILFGELDIARRLLD----I-GINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHhCCHHHHHHHHH----C-CCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3445677766555554 2 33444322 33455666677776543 4445566555432 122344555667
Q ss_pred CcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHH
Q 018882 112 KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT--FNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~ 189 (349)
|+.+.+..+++.-.......+..- ...+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 877766555543221110111111 22333444556654 4455566665554321 1223444556677665444
Q ss_pred HHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH---HHHHHHHHHhcCChhhHHHHHHH
Q 018882 190 VMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT---LCSLVRAYGHAGKPEKLGSVLRF 263 (349)
Q Consensus 190 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~ 263 (349)
++ +.|..+ +..-.+.+.. .+..|+.+- .+.+.+.|..++... ....+...+..|+.+ +.+.
T Consensus 154 Ll----~~g~~~~~~d~~g~TpL~~-A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 154 LI----DHKACLDIEDCCGCTPLII-AMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred HH----hcCCCCCCCCCCCCCHHHH-HHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 44 334332 2223333333 344566443 334445555444321 123333344555543 4455
Q ss_pred HhhCCCCchH
Q 018882 264 IDNSDIMLDT 273 (349)
Q Consensus 264 ~~~~~~~~~~ 273 (349)
+.+.|..++.
T Consensus 221 Ll~~gad~n~ 230 (413)
T PHA02875 221 FIKRGADCNI 230 (413)
T ss_pred HHHCCcCcch
Confidence 5566665553
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.15 E-value=56 Score=27.15 Aligned_cols=98 Identities=8% Similarity=-0.078 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 165 QPSINTFNILLDSYGKAGH------------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+-|..+|-.++..--..-. .+.-+.++++..+.++ -+...+..++..+.+..+.+...+-++.+...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4467777776654322211 2334455566555543 25555556666666666666666666666654
Q ss_pred CCCCcHHHHHHHHHHHHh---cCChhhHHHHHHHH
Q 018882 233 RIKPSCVTLCSLVRAYGH---AGKPEKLGSVLRFI 264 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 264 (349)
. +-+...|...+..... .-.++....+|...
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 2 2345555555554433 22344555555443
No 378
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.12 E-value=1e+02 Score=29.68 Aligned_cols=187 Identities=11% Similarity=0.069 Sum_probs=103.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCchhhHH--
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGI---QPSINTFNILLDSYGKAGHF--EKMSAVMEYMQKYHYSWTIVTYN-- 207 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 207 (349)
-|..|+..|...|+.++|+++|.+..+..- ..-...+...+..+.+.+.. +-.++.-+...+.+..-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 478899999999999999999999877321 11112233345544444443 33333333333222111111111
Q ss_pred ----------HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC--------hhhHHHH-----HHHH
Q 018882 208 ----------IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK--------PEKLGSV-----LRFI 264 (349)
Q Consensus 208 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~ 264 (349)
..+-.|......+.+..+++.+....-.++....+.++..|+..=+ -+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1122345666777888888888766556677777777776654322 1222222 1111
Q ss_pred hh--CCCC--------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------------CCCCCHHHHHHHHHHHHhc
Q 018882 265 DN--SDIM--------LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-------------GCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 265 ~~--~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------~~~p~~~~~~~l~~~~~~~ 321 (349)
.+ .... +....|....-.+.+.|+.++|+.++-..... ...++...|..++..|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11 1111 12334444444456888999998877655431 2344778888888888776
No 379
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.94 E-value=73 Score=29.06 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 286 LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.|++.+|.+.+-.+...+..|...-...|.+
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp -------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 4777777777777777666665544444443
No 380
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.82 E-value=35 Score=24.36 Aligned_cols=50 Identities=2% Similarity=-0.060 Sum_probs=25.5
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018882 225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (349)
+...+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 334444555555433 23344555555555666666666666554444333
No 381
>PRK10941 hypothetical protein; Provisional
Probab=69.79 E-value=35 Score=27.46 Aligned_cols=79 Identities=13% Similarity=-0.069 Sum_probs=58.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCchHHHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG-IRPNTVTYNTLIDA 107 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 107 (349)
..+.+-.+|.+.++++.|+...+.+.... +.+..-+.-..-.|.+.|.+..|..-++...+.- -.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34566777899999999999999998874 5566667777788999999999999888887652 34555555555554
Q ss_pred Hh
Q 018882 108 YG 109 (349)
Q Consensus 108 ~~ 109 (349)
..
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 382
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=69.73 E-value=56 Score=29.93 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=58.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHhcCCCCchHHHHHH
Q 018882 32 ALLSAYGRSGLFDKAFSLLEHMKNTP-DCQPDVNTYSILIKSCLKAFAFD------KVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
+|+.+|..+|++.++.++++.....+ +-+--...||..++...+.|.++ .+.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999998887642 11223466888888888888764 3444444443 44577888877
Q ss_pred HHHHhccCcHHHHHHHHHHHh
Q 018882 105 IDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~ 125 (349)
+.+....-.-.-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776655333333333333333
No 383
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.60 E-value=58 Score=26.32 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCHHHHHHHH----HHHHhcCCCCCHHH
Q 018882 277 NCLVDAYGRLKCFAEMKGVL----EVMQQRGCKPDKVT 310 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~ 310 (349)
..+|..+.+.|.+.+|+.+. .++.+.+-+|+..+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 35677788888888887654 34444444444433
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.78 E-value=33 Score=27.17 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=51.9
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCchHHHHHHHHHHhccCcHHHHH
Q 018882 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ----G-IRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
+.|.+.|...... .--......+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+
T Consensus 162 ~~A~~~f~~~~~~---R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 162 EKAYEQFKKYGQN---RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHhccc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666554432 223334445677788888888888888887432 3 3445666777888888888888877
Q ss_pred HHHHHHh
Q 018882 119 LTLVKML 125 (349)
Q Consensus 119 ~~~~~~~ 125 (349)
.+.-++.
T Consensus 239 ~~~leLl 245 (247)
T PF11817_consen 239 TTSLELL 245 (247)
T ss_pred HHHHHHh
Confidence 7665554
No 385
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.68 E-value=66 Score=26.57 Aligned_cols=143 Identities=10% Similarity=0.040 Sum_probs=76.3
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc-
Q 018882 50 LEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE- 127 (349)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 127 (349)
++.+.+...+..|...++.+..+ +...+++..+..++..+. |-.--...+......|++.|+-+.|++.+++..+.
T Consensus 57 Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~kt 134 (393)
T KOG0687|consen 57 YEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKT 134 (393)
T ss_pred HHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33333344445566555555543 222334444444444433 22222345666778899999999999888766544
Q ss_pred ---CCCcchhhHHHHHHHH-HccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 128 ---DCEPDVWTMNCTLRAF-GNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 128 ---~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
|.+.|+..+..-+..+ ....-..+-++..+.+.+.|..-+ ..+|..+- +....++.+|-.+|-+...
T Consensus 135 vs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 135 VSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 5666766554444333 222223444445555566664332 23444333 2344578888888766543
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.37 E-value=17 Score=29.73 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH--HHHHHHHHhcCChhHHHHH
Q 018882 8 PEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY--SILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~ 85 (349)
+.+|..+|++..+.| ..+|+. -+.+...|... +.+.++ ..++.+| ..+.-+..+.|+..+|.+.
T Consensus 232 i~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~------da~~rR---Dtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQH------EAQLRR---DTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred HHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccch------hhhhhc---ccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 457888888887764 223331 11122222222 223333 2344444 3445555567888888888
Q ss_pred HHHHHhcCCCCch---HHHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 86 LSDMSTQGIRPNT---VTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 86 ~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
++++.+. .|=. .....|+.++....-+.++..++-+.-+..
T Consensus 298 ~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 298 MRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 8887765 2222 234457788877777777777766665544
No 387
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.23 E-value=6.7 Score=27.24 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=21.3
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 145 NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
..|.-.+|..+|..|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345556677888888888877765 5666554
No 388
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.75 E-value=1.2e+02 Score=29.04 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=116.5
Q ss_pred hccCcHHHHHHHHHHHhccCCCcchh-------hHHHHH-HHHHccCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHH
Q 018882 109 GRAKMFAEMELTLVKMLSEDCEPDVW-------TMNCTL-RAFGNSGQIDTMEKCYEKFQSA----GIQPSINTFNILLD 176 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 176 (349)
....++.+|..++.++...-..|+.. .++.+- ......|+++.+.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34577888888888776542222211 233322 2234678888888887776553 22334556677778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc---hhhHHHHHH--HHHhcCChHH--HHHHHHHHHhC---CCC---CcHHHHHH
Q 018882 177 SYGKAGHFEKMSAVMEYMQKYHYSWT---IVTYNIVID--AFGRAGDLKQ--MEYLFRLMRSE---RIK---PSCVTLCS 243 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~--~~~~~~~~~~--a~~~~~~~~~~---~~~---~~~~~~~~ 243 (349)
+..-.|++++|..+.....+..-.-+ ...|..+.. .+...|+... ....+...... ..+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999988876654421222 333333322 3445563222 22233322211 111 22234444
Q ss_pred HHHHHHhcC-ChhhHHHHHHHHhhCCCCchHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCHHHHHHHHH
Q 018882 244 LVRAYGHAG-KPEKLGSVLRFIDNSDIMLDTV--FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK----PDKVTYRTMVR 316 (349)
Q Consensus 244 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~l~~ 316 (349)
+..++.+.. ...++..-+.........|-.. .+..|+......|+.++|...++++...... ++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 555554411 1222222222222222222222 2236778888899999999998888765333 33333333333
Q ss_pred H--HHhcCchhhhHHHHH
Q 018882 317 A--YSTNGMKNHAKEFQD 332 (349)
Q Consensus 317 ~--~~~~g~~~~a~~~~~ 332 (349)
. ....|+.+.+...+.
T Consensus 666 ~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 666 LILWLAQGDKELAAEWLL 683 (894)
T ss_pred HHHhcccCCHHHHHHHHH
Confidence 3 355677666665443
No 389
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=67.65 E-value=65 Score=26.11 Aligned_cols=28 Identities=0% Similarity=-0.029 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 89 (349)
-..++..+...|++.++.+.+.++..+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3445555555666666655555554443
No 390
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.88 E-value=75 Score=29.18 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=48.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhh------HHHHHHHHhhCCCCchHHHHHHH
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEK------LGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
.|..+|...|++..+..+++.+... |-+.-...++..++.+.+.|.++- |...++... +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7788888888888888888887653 333344667788888888887652 222333322 33466777776
Q ss_pred HHHHHh
Q 018882 280 VDAYGR 285 (349)
Q Consensus 280 i~~~~~ 285 (349)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 391
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.84 E-value=57 Score=29.40 Aligned_cols=58 Identities=12% Similarity=-0.044 Sum_probs=25.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (349)
+.....+.|-..+|..++.+..... ...+.++..+.+++....+.+.|++.|++..+.
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 3333344444444444444433332 112333444444455555555555555544443
No 392
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.82 E-value=44 Score=26.48 Aligned_cols=62 Identities=10% Similarity=-0.044 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhcc----C-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
..--.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+--++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34445778899999999999999988532 3 24556777888899999999999887765554
No 393
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.46 E-value=5.6 Score=32.58 Aligned_cols=117 Identities=18% Similarity=0.092 Sum_probs=78.6
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch-HHHHHHHHHHhccCcHH
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 115 (349)
....|.++.|++.|...+... ++....|..-.+++.+.+.+..|+.-++..... .||. .-|-.--.+-.-.|+|+
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchH
Confidence 346788999999999888774 677778888888999999999998888877765 3443 23333333344568999
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
+|...+....+.+..+....+. =...-+.+..++-...+++.
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~l--KeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSATL--KEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHHHHHhccccHHHHHHH--HHhccchhhhhhchhHHHHH
Confidence 9999999998887666554332 23333344444443444443
No 394
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=63.87 E-value=83 Score=25.97 Aligned_cols=87 Identities=11% Similarity=-0.002 Sum_probs=50.2
Q ss_pred cCCChhHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDC---QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (349)
..+-.+.|.+.|+.....+.. ..+......++....+.|+.+....+++..... .+......++.+++...+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHH
Confidence 444466777777776654221 234445556666666777655555555554433 35666777788887777777
Q ss_pred HHHHHHHHHhccC
Q 018882 116 EMELTLVKMLSED 128 (349)
Q Consensus 116 ~a~~~~~~~~~~~ 128 (349)
...++++.....+
T Consensus 219 ~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 219 LLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHHHCTS
T ss_pred HHHHHHHHHcCCc
Confidence 7777777777654
No 395
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.36 E-value=65 Score=24.59 Aligned_cols=94 Identities=15% Similarity=-0.026 Sum_probs=68.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWT----IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
.+-+...|++++|..-|.......+... ...|..-..++.+.+.++.|+.--...++.+ +.....+..-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3457789999999999999887643322 3445555667788899999988888777765 2223334444567888
Q ss_pred cCChhhHHHHHHHHhhCCC
Q 018882 251 AGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~ 269 (349)
...++.|+.-|+.+.+..+
T Consensus 181 ~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhHHHHHHHHHHHHHhCc
Confidence 8899999999999988653
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.55 E-value=16 Score=17.27 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=16.4
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 018882 6 KQPEKAHELFQAMVDEGCDANTQSFTALLS 35 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 35 (349)
|+++.|..+|+++.... +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45666777777766542 344555554443
No 397
>PRK09687 putative lyase; Provisional
Probab=62.17 E-value=84 Score=25.51 Aligned_cols=234 Identities=11% Similarity=-0.016 Sum_probs=144.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHhcCCCCchHH
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF----DKVQALLSDMSTQGIRPNTVT 100 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 100 (349)
++..+....+..+...|. +++...+..+.. .+|...-...+.++...|+. .++...+..+... .++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 566677777778877775 344455555544 34666666777777887764 4577777776443 456666
Q ss_pred HHHHHHHHhccCc-----HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 101 YNTLIDAYGRAKM-----FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175 (349)
Q Consensus 101 ~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (349)
-...+.++...+. ...+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 6667767666542 1233444444333 2355555677777888877 4566666666653 4555566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 176 DSYGKAG-HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 176 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.++.+.+ +...+...+..+.. .++...-...+.++.+.++. .+...+-...+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6666653 24456666666653 34777778888888888885 5555555555443 2 234677888888886
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
+|...+..+.+.. +|..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 5777777776543 46666555555543
No 398
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=62.03 E-value=56 Score=24.06 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=40.9
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH
Q 018882 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-...
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4456766665433 4555555566677788888888887766666666666777777775543
No 399
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=61.59 E-value=28 Score=23.48 Aligned_cols=47 Identities=0% Similarity=-0.074 Sum_probs=30.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
++..+...+..-.|.++++.+.+.+..++..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555555666678888888877666566666555666666666544
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.53 E-value=1e+02 Score=26.37 Aligned_cols=160 Identities=11% Similarity=-0.039 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhccC--CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---------CCCCC
Q 018882 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSED--CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA---------GIQPS 167 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 167 (349)
..+.-+..-|..+|+++.|++.|.+....- .+..+..|-.+|..-.-.|+|.....+..+..+. .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356667788888999999999998865431 1233455666667777778887777666665543 12333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhhHHHHHHHHHhcCChHHHHH-----HHHHHHhCCCCC
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYH------YSWTIVTYNIVIDAFGRAGDLKQMEY-----LFRLMRSERIKP 236 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~-----~~~~~~~~~~~~ 236 (349)
...+..+..... +++..|.+.|-...... +.|.-.+....+.+++.-++-+--.. .|+.+.+ .
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 334444444333 36666665554332211 12322222233334333333222212 2222222 2
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
.+.....+..-| .+++..+.++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 223333333333 4677778888877754
No 401
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=61.39 E-value=83 Score=25.17 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=28.9
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK 75 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 75 (349)
..+.++..+.+.+....|+.+.+.+... +-=..+...++.....
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l---~~F~~~LE~LLh~vL~ 127 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL---PYFSHALELLLHTVLE 127 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC---CCcHHHHHHHHHHHHh
Confidence 3566778888888888888888887754 2234455555554444
No 402
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.36 E-value=16 Score=30.14 Aligned_cols=93 Identities=12% Similarity=0.016 Sum_probs=52.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..|.++.|++.+...+... ++....|..-..++.+.+++..|++=++...+.+.. ...-|-.-..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 4566677777766665554 444555555556666667777776666666554321 11223223333444667777777
Q ss_pred HHHHHHhcCCCCCHH
Q 018882 295 VLEVMQQRGCKPDKV 309 (349)
Q Consensus 295 ~~~~m~~~~~~p~~~ 309 (349)
.|....+.++.+...
T Consensus 204 dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 204 DLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHhccccHHHH
Confidence 777777666554433
No 403
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.34 E-value=52 Score=22.80 Aligned_cols=43 Identities=9% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHHHHHHH
Q 018882 81 KVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVK 123 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 123 (349)
.+.++|..|...|+... +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777655433 34555666666777777777777764
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.77 E-value=41 Score=21.46 Aligned_cols=14 Identities=7% Similarity=0.171 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHHH
Q 018882 182 GHFEKMSAVMEYMQ 195 (349)
Q Consensus 182 ~~~~~a~~~~~~~~ 195 (349)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444333
No 405
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.60 E-value=48 Score=22.18 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
..++|..+.+.+...+. ....+--.-+..+.+.|++++|+ ..-. ....||...|..+. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~~--~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLPQ--CHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHHT--TS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hhcc--cCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 44556556555555432 12222222333445556666651 1111 11245544443332 235555555555555
Q ss_pred HHHhcC
Q 018882 158 KFQSAG 163 (349)
Q Consensus 158 ~~~~~~ 163 (349)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555444
No 406
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.47 E-value=1.6e+02 Score=28.18 Aligned_cols=199 Identities=15% Similarity=0.077 Sum_probs=109.8
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHH-HHHHhcCCHHHHHHHHHHHHhc----CCCCchhhHHHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSI-------NTFNILL-DSYGKAGHFEKMSAVMEYMQKY----HYSWTIVTYNIVI 210 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 210 (349)
.....++.+|..+..++...-..|+. ..++.+- ......|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34677889999988887654222221 1233322 1234568889998888776543 2344567778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcH---HHHHHH--HHHHHhcCChh--hHHHHHHHHhhC-----CC-CchHHHHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSC---VTLCSL--VRAYGHAGKPE--KLGSVLRFIDNS-----DI-MLDTVFFN 277 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l--~~~~~~~~~~~--~a~~~~~~~~~~-----~~-~~~~~~~~ 277 (349)
.+..-.|++++|..+.+...+..-.-+. ..|..+ ...+...|... +....+...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999988877543212222 223333 23355667332 222333322211 10 12234555
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 278 CLVDAYGRL-KCFAEMKGVLEVMQQRGCKPDKVTY--RTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 278 ~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
.+..++.+. +...++..-++-.......|-.... ..++......|+.+.|...++.+..+-..+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 566665552 1222233333322222222222222 256778888999999999888887765543
No 407
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=60.30 E-value=82 Score=24.77 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-C-----------CCCcHHHHHHHH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-R-----------IKPSCVTLCSLV 245 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~ 245 (349)
|.+..+.+--.++.+-....+++-+.....+++ +...|+..+|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344444444444444444444444444444443 34566666666665544321 1 146666667777
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
..|. .+++++|.+++..+.+.|..|.. ..+.+.++
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv 281 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED-IITTLFRV 281 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 6554 46788888888888888876543 33334443
No 408
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.30 E-value=33 Score=29.78 Aligned_cols=101 Identities=18% Similarity=0.097 Sum_probs=67.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDAN-TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
.+.+.++.|+.++.+..+. .|| +..|..-..++.+.+++..|+.=+....+.. +-....|-.-..++...+.+.+
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 3567788888888888886 354 3344444477888888888888777777653 3334455555566666777777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYG 109 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (349)
|...|+..... .|+..-....+.-|-
T Consensus 91 A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 91 ALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 77777776654 677666666665553
No 409
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.19 E-value=1.5e+02 Score=27.68 Aligned_cols=229 Identities=9% Similarity=-0.049 Sum_probs=114.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH--HHHHHHHHhccCCCcchhhHH
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE--MELTLVKMLSEDCEPDVWTMN 137 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~ 137 (349)
+.+...-.....+....|+.++|......+-..|. ..+..++.++..+.+.|.+.. ..+-++.+...+- ...-.
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~---~~lA~ 201 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN---TGLVT 201 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC---HHHHH
Confidence 44555556777888888998888777777766653 356678888888876665433 2222233332221 11111
Q ss_pred HHHHHHH------------ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcC-CCCc
Q 018882 138 CTLRAFG------------NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG--KAGHFEKMSAVMEYMQKYH-YSWT 202 (349)
Q Consensus 138 ~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~-~~~~ 202 (349)
.+...+. -..+...+...+. .++++...-..++-++. ...+.+.|..++....... ..+.
T Consensus 202 ~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~ 276 (644)
T PRK11619 202 YLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNED 276 (644)
T ss_pred HHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHH
Confidence 1111110 0011111111111 11222211111111221 3445688888888764332 2221
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018882 203 --IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 203 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
...+..+.......+..+++...+....... .+.....--+......++++.+...+..|....- -...-.--+.
T Consensus 277 ~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~a 353 (644)
T PRK11619 277 QRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQA 353 (644)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHH
Confidence 2233444433334332455655555543221 2334444445555577888877777777654322 2334444567
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 018882 281 DAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~ 300 (349)
+++...|+.++|...|+.+.
T Consensus 354 Ra~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 354 DLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 77777888888888887763
No 410
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=59.60 E-value=35 Score=20.33 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
|....++.++..+++..-.+.++..+.++.+.|. .+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777764 3566666666665553
No 411
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=58.99 E-value=8.7 Score=22.70 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=19.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDV 63 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~ 63 (349)
.=+++.|+..|..++..+.++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 347899999999999887777764
No 412
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=58.65 E-value=26 Score=23.87 Aligned_cols=46 Identities=7% Similarity=0.158 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
.++..+...+..-.|.++++.+...+...+..|.-.-+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3455555555555666666666666655566555555566665553
No 413
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.88 E-value=98 Score=24.87 Aligned_cols=81 Identities=10% Similarity=0.161 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHcCCChhHHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHhcCCh
Q 018882 7 QPEKAHELFQAMVDEGCDAN---TQSFTALLSAYGRSGLFDKAFSLLEHMKNTP----DCQPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~ 79 (349)
.+++|+.-|++..+...... -.+...++....+.|++++..+.+.++...- .-.-+..+.|.++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 44555555555554321111 1122334444555555555555555543210 0012333444455444444444
Q ss_pred hHHHHHHH
Q 018882 80 DKVQALLS 87 (349)
Q Consensus 80 ~~a~~~~~ 87 (349)
+....+++
T Consensus 122 ~LLQ~FYe 129 (440)
T KOG1464|consen 122 DLLQEFYE 129 (440)
T ss_pred HHHHHHHH
Confidence 44444433
No 414
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.69 E-value=1.8e+02 Score=27.48 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 241 LCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
-..|+..|...++++.|..++-....
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccC
Confidence 34478888888999999888876654
No 415
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.68 E-value=1.6e+02 Score=26.95 Aligned_cols=63 Identities=5% Similarity=0.048 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
.+.....-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+.-+.+.|+...+..+.+.+.
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455566677777777777777777766544322 23445556666677777666665555544
No 416
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=56.60 E-value=28 Score=20.73 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=8.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 018882 69 LIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~ 91 (349)
++...++-.-.+.++..+.+..+
T Consensus 14 l~el~Aed~AieDtiy~L~~al~ 36 (65)
T PF09454_consen 14 LYELVAEDHAIEDTIYYLDRALQ 36 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 417
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.82 E-value=1e+02 Score=24.33 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=18.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018882 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
+++.+-+.++++++...+.++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3344445555555555555555554444555555444444
No 418
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.52 E-value=2e+02 Score=27.81 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 91 (349)
|..|+..|...|+.++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 44455555555555555555555544
No 419
>PRK10941 hypothetical protein; Provisional
Probab=55.06 E-value=1.1e+02 Score=24.66 Aligned_cols=77 Identities=16% Similarity=0.009 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 018882 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG-CKPDKVTYRTMVRAY 318 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~ 318 (349)
.+.+-.+|.+.++++.|.++.+.+....+ .++.-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 44556667777778878777777776543 245555556666777777777777777666542 223444444444333
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.88 E-value=1.4e+02 Score=25.65 Aligned_cols=56 Identities=7% Similarity=-0.042 Sum_probs=39.3
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchh--hHHHHHHHHH--ccCCHHHHHHHHHHHHhc
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVW--TMNCTLRAFG--NSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 162 (349)
..+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788999999999999876 455444 4455555554 466788888888887664
No 421
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=54.82 E-value=53 Score=20.90 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018882 48 SLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 91 (349)
++|+-.... |+.-|...|..++..+.-.-.++...++++.|..
T Consensus 29 EL~ELa~~A-Gv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLA-GVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHh-CCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 444444333 4456666666666655555555555666665544
No 422
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=54.79 E-value=46 Score=22.42 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444455556667777777776665566666666666666666543
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.60 E-value=1.4e+02 Score=25.67 Aligned_cols=160 Identities=10% Similarity=-0.018 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc---------CCCcc
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---------DCEPD 132 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 132 (349)
..+.-+..-|...|+++.|.+.|.+...- ..+-....|..+|..-...|+|.....+..+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 35667788889999999999999885543 11224556677777777888888888777776544 12233
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHhcCCCC
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG------IQPSINTFNILLDSYGKAGHFEKMSAV-----MEYMQKYHYSW 201 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~~ 201 (349)
...+..+..... ++++.|.+.|-...... +.|...+....+.+++--++-+--..+ |+...+ .
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 333333333333 36666655543322111 233333333344444433332222222 222222 2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
.+..+..+...| .+++...+++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 344555555444 3568888888888754
No 424
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.51 E-value=1.3e+02 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=18.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHY 199 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (349)
+...+..+|..+.|..+++.+.+.++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 34445678888888888888877654
No 425
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.84 E-value=1.6e+02 Score=26.24 Aligned_cols=166 Identities=10% Similarity=0.029 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHH
Q 018882 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTL 140 (349)
Q Consensus 61 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (349)
.|.....+++..+.....++-++.+..+|..-| -+-..|..++.+|... ..+.-..+|+++.+..+ .|+..-..+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344444555555555555555555555555543 2444555555555555 33444455555444321 2222222233
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchhhHHHHHHHHH
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQP-----SINTFNILLDSYGKAGHFEKMSAVMEYMQKY-HYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 214 (349)
..|.+ ++.+.+..+|.++...-++. -...|.-+... -..+.+....+..+++.. |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 45555555555544331110 01123222221 123444444444444322 22223333444444455
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 018882 215 RAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~ 233 (349)
...++.+|++++..+.+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 5555555555555555443
No 426
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=53.76 E-value=10 Score=21.26 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=17.9
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDV 63 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~ 63 (349)
.-+++.|...|..+...+.+||+.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 447899999999999988888874
No 427
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=53.47 E-value=89 Score=23.04 Aligned_cols=60 Identities=12% Similarity=-0.027 Sum_probs=31.6
Q ss_pred HhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
...|+.++.. -..++..+...++.-.|.++++.+.+.+..++..|....+..+...|-+.
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3445543332 22344444444555566777777666665555555555555566555443
No 428
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=53.46 E-value=1.3e+02 Score=24.81 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=16.8
Q ss_pred CCChhhHHHHHHH-HHcCCC-hhHHHHHHHHhhc
Q 018882 24 DANTQSFTALLSA-YGRSGL-FDKAFSLLEHMKN 55 (349)
Q Consensus 24 ~~~~~~~~~l~~~-~~~~~~-~~~a~~~~~~~~~ 55 (349)
.|+..+++.|..- +.+.|= ..-|.++|.....
T Consensus 162 t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~ 195 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLV 195 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHh
Confidence 4555666665543 444442 3345666665554
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.21 E-value=59 Score=20.90 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=33.1
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 018882 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA 78 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 78 (349)
+.|......+...+...|++++|++.+-.+.+...-.-+...-..++..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4466777777788888888888888887777664322344445555555555444
No 430
>PRK09462 fur ferric uptake regulator; Provisional
Probab=52.88 E-value=82 Score=22.50 Aligned_cols=63 Identities=2% Similarity=0.022 Sum_probs=38.9
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhc-CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 227 RLMRSERIKPSCVTLCSLVRAYGHA-GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
+.+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445567666543 33344555543 457778888888887776666666555666666666543
No 431
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=52.64 E-value=1.9e+02 Score=26.71 Aligned_cols=196 Identities=11% Similarity=0.091 Sum_probs=115.2
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH--HHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCchH--
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN--TYSILIKSCL-KAFAFDKVQALLSDMSTQGIRPNTV-- 99 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 99 (349)
.+...|..||.. |++-++.+.+....+|... ++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345566666653 5555666654444455433 3445556555 6789999999999876543222221
Q ss_pred ---HHHHHHHHHhccCcHHHHHHHHHHHhccC----CCcchhhHHHH-HHHHHccCCHHHHHHHHHHHHhcC---CCCCH
Q 018882 100 ---TYNTLIDAYGRAKMFAEMELTLVKMLSED----CEPDVWTMNCT-LRAFGNSGQIDTMEKCYEKFQSAG---IQPSI 168 (349)
Q Consensus 100 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 168 (349)
+-..++..+.+.+... |.+.+++.++.- ..+-...+..+ +..+...++...|.+.++.+...- ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234567777777666 888888876542 11222333333 223333489999999998876542 23444
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcC---------CCCchhhHHHHHHHHH--hcCChHHHHHHHHHHH
Q 018882 169 NTFNILLDSYG--KAGHFEKMSAVMEYMQKYH---------YSWTIVTYNIVIDAFG--RAGDLKQMEYLFRLMR 230 (349)
Q Consensus 169 ~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 230 (349)
.++..++.+.. +.+..+++.+.++.+.... -.|...+|..+++.++ ..|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555544 4455677777776663321 1335667777776554 6777777776665553
No 432
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.08 E-value=1.6e+02 Score=25.48 Aligned_cols=199 Identities=12% Similarity=0.049 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCCChhh--HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHH
Q 018882 13 ELFQAMVDEGCDANTQS--FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN--TYSILIKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~ 88 (349)
++++.+.+.|..|+... -.+.+...+..|+.+-+.-+++ .+ ..|+.. .....+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~g-a~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK----HG-AIPDVKYPDIESELHDAVEEGDVKAVEELLD- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh----CC-CCccccCCCcccHHHHHHHCCCHHHHHHHHH-
Confidence 34566666787776533 2334555567777764433333 32 133321 12234566678888877665554
Q ss_pred HHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhh--HHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 89 MSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWT--MNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 89 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
.|...+ ..- ...+...+..|+.+- ++.+.+.|..|+... -...+...+..|+.+.+ +.+.+.
T Consensus 90 ---~~~~~~~~~~~~g-~tpL~~A~~~~~~~i----v~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v----~~Ll~~ 157 (413)
T PHA02875 90 ---LGKFADDVFYKDG-MTPLHLATILKKLDI----MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI----ELLIDH 157 (413)
T ss_pred ---cCCcccccccCCC-CCHHHHHHHhCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhc
Confidence 332211 111 223344455666543 344444554443221 12344455567776644 444455
Q ss_pred CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhh---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 018882 163 GIQPSI---NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT---YNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 163 ~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (349)
|..++. .-.+. +...+..|+.+- .+.+.+.|..++... ....+...+..|+.+ +.+.+.+.|..+
T Consensus 158 g~~~~~~d~~g~Tp-L~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~ 228 (413)
T PHA02875 158 KACLDIEDCCGCTP-LIIAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADC 228 (413)
T ss_pred CCCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCc
Confidence 544332 22233 333455666554 344555665554322 123444345566654 444445667666
Q ss_pred cH
Q 018882 237 SC 238 (349)
Q Consensus 237 ~~ 238 (349)
+.
T Consensus 229 n~ 230 (413)
T PHA02875 229 NI 230 (413)
T ss_pred ch
Confidence 53
No 433
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=52.08 E-value=28 Score=17.28 Aligned_cols=24 Identities=8% Similarity=0.296 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHH
Q 018882 7 QPEKAHELFQAMVDEGCDANTQSFTA 32 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~ 32 (349)
.++.|..+|++.... .|++.+|..
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 356666666666654 355555543
No 434
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.45 E-value=2.3e+02 Score=27.22 Aligned_cols=132 Identities=8% Similarity=0.087 Sum_probs=60.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 018882 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
-..+...|+.+....+-.-+. .|..++..+...+.+++|.+++..-. ++...-...-.+ ....+
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~L-i~~~p 574 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPEL-ITHSP 574 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHH-HhcCc
Confidence 334445555555544433332 25667777788888888887775431 111111111111 12233
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
......+....+. .+......++..+...+ ....+...++.....-..-++..+|.++..|++..+-+
T Consensus 575 ~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 575 KETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred HHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 3334444333221 11222333333333332 22233444443333222346777777777777665433
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.19 E-value=1.4e+02 Score=24.61 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----------cCcHHH
Q 018882 47 FSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----------AKMFAE 116 (349)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 116 (349)
.++++.+... ++.|.-.++.-+.-.+.+.=.+..++.+|+.+.... .-|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4677777754 678888777766666677778888999999988742 226666666544 488888
Q ss_pred HHHHHHHH
Q 018882 117 MELTLVKM 124 (349)
Q Consensus 117 a~~~~~~~ 124 (349)
..++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 88877663
No 436
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.51 E-value=1.7e+02 Score=25.43 Aligned_cols=32 Identities=9% Similarity=-0.135 Sum_probs=17.6
Q ss_pred CChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018882 252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
++++.|...+..+.+.|..|....-..++.++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56666666666666666555444433333333
No 437
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.24 E-value=22 Score=24.83 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018882 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
|.-..|..+|+.|++.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 344455666666666665554 3444443
No 438
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.70 E-value=43 Score=22.82 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Q 018882 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 67 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3455555666666667777777777666666665555555555554
No 439
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=49.63 E-value=2.7e+02 Score=27.49 Aligned_cols=127 Identities=9% Similarity=0.122 Sum_probs=58.1
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCchHHHHHHH----
Q 018882 33 LLSAYGRSGLFDKAFSLLEHMKNTPDC--QPDVNTYSILIKSCLK-AFAFDKVQALLSDMSTQGIRPNTVTYNTLI---- 105 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 105 (349)
.+.-+...+++.+|..+.++-+-.-++ .-+...|-.=+..+.+ .++.+-.-.++..+.+..+ +...|....
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tmY~~~~~~~~ 777 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTMYKDTYPPSS 777 (928)
T ss_pred HHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--ccccccccccccc
Confidence 445567788898888877654321111 1123333322333332 3444444444444443322 111121111
Q ss_pred --------HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC--CHHHHHHHHHHHHhc
Q 018882 106 --------DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG--QIDTMEKCYEKFQSA 162 (349)
Q Consensus 106 --------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 162 (349)
......++....-+.+.+..... .-.......++.+|.+.+ ++++|+....++.+.
T Consensus 778 ~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 778 EAQPNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccccccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 01111223333333333333221 222334556677777777 777777777777755
No 440
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.33 E-value=1.5e+02 Score=24.44 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh----------cCCHHHH
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR----------LKCFAEM 292 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a 292 (349)
.++|+.+.+.++.|.-.++.=+.-.+.+.=.+...+.+|+.+..- +.-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 568888888888898888877777777777888899999988753 2235566666554 4666666
Q ss_pred HHHHH
Q 018882 293 KGVLE 297 (349)
Q Consensus 293 ~~~~~ 297 (349)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66554
No 441
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=49.22 E-value=62 Score=28.19 Aligned_cols=102 Identities=9% Similarity=-0.099 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCCh
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 254 (349)
+.+...++++.|..++.++.+.... ....|..-..++.+.+++..|+.=+..+.+.. |+ ...|..=..++...+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 3344555666666666666654311 22333333355566666666655554444432 21 12222222333444445
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
.+|...|+.... +.|+..-....+.-
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHH
Confidence 555555554443 23444444444433
No 442
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.20 E-value=1.5e+02 Score=24.21 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=54.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
++....+.++.....+.+..+. ....-...+..+...|++..|++++.+..+.- . ....|+.+=..- .+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---SQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---HH
Confidence 3344444444444444444332 44455566677778888888888877665431 0 111111111111 11
Q ss_pred hHHHHHHHHHHHhC-----CCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 219 LKQMEYLFRLMRSE-----RIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 219 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
+++-......+.+. -...|+..|..+..+|.-.|+...+.+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 22222222222211 114567778888888888887665543
No 443
>PRK09462 fur ferric uptake regulator; Provisional
Probab=48.06 E-value=1e+02 Score=22.07 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=34.5
Q ss_pred HHhcCCCCchhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 194 MQKYHYSWTIVTYNIVIDAFGRA-GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
+.+.|..++.. -..++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-.
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555554332 33344444443 45667777777777766555666665566666666654
No 444
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=47.77 E-value=1.5e+02 Score=23.85 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-CCC-----CHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhcc
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRG-CKP-----DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAM 344 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 344 (349)
++..|.+.|+.+.|-.++--+...+ ... +...-..++......|+++-+.++.+-+..+++++...
T Consensus 185 Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~~~l 256 (258)
T PF07064_consen 185 LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEGNTL 256 (258)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcccCcC
Confidence 4555566666666655554443332 111 23344566677778888999988888888888876544
No 445
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.76 E-value=1.5e+02 Score=24.14 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
...+..+...|++.++.+.+.+..++
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555555555555554443
No 446
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.46 E-value=1.2e+02 Score=23.07 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCC
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTP 57 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 57 (349)
...+.++..+...|+++.|-+.|.-+....
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 345667777777788888888777777654
No 447
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=47.18 E-value=84 Score=20.96 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 018882 174 LLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~ 194 (349)
++..|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666666655554
No 448
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=47.17 E-value=74 Score=20.29 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
++|+-....|+..|...|..++..+.-+=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555544444555555555443
No 449
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.66 E-value=1.6e+02 Score=23.91 Aligned_cols=84 Identities=12% Similarity=-0.009 Sum_probs=40.0
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR---- 110 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 110 (349)
..+++..+...+......+ +......+...+.. ..+..+|..++....+.|.. .....|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 3445666666666655432 11222233333332 23455666666655555422 222223333333
Q ss_pred cCcHHHHHHHHHHHhccCC
Q 018882 111 AKMFAEMELTLVKMLSEDC 129 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~ 129 (349)
..+..+|...+.+..+.|.
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGN 144 (292)
T ss_pred ccCHHHHHHHHHHHHHcCC
Confidence 2356666666666666553
No 450
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.65 E-value=1e+02 Score=21.81 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=33.6
Q ss_pred CCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 235 KPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.++..+-..+..++.++.+ ..+.+.+++.+.+ ....-.......|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444444555555555544 3344455555543 111112223334455566666666666666666554
No 451
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=46.55 E-value=67 Score=19.65 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC
Q 018882 8 PEKAHELFQAMVDEGCDANTQSFTALLSAYGRS 40 (349)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 40 (349)
.+.|..++..+... -+.++..||++...+.+.
T Consensus 13 tEmA~~mL~DLr~d-ekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDD-EKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcch-hhcChHHHHHHHHHHHHc
Confidence 45566666666543 245677888887766554
No 452
>PRK12798 chemotaxis protein; Reviewed
Probab=46.06 E-value=2e+02 Score=24.92 Aligned_cols=152 Identities=13% Similarity=-0.003 Sum_probs=77.7
Q ss_pred cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH-HccCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHH
Q 018882 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF-GNSGQIDTMEKCYEKFQSAGIQPSI----NTFNILLDSYGKAGHFE 185 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 185 (349)
.|+-.++.+.+..+.....++...-+-.|+.+- ....+...|+++|+...-. .|.+ ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 467777777777776666566666665555543 3455677777777775543 2222 22333344456667777
Q ss_pred HHHHHHHHHHhc-CCCCchhh-HHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018882 186 KMSAVMEYMQKY-HYSWTIVT-YNIVIDAFGRAGD---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 186 ~a~~~~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
++..+-...... .-.|-..- +..+...+.+.++ .+....++..|.. .--...|..+.+.-.-.|+.+.|...
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 666555443322 21222222 2222333333332 2222223332211 11235666677777777777776666
Q ss_pred HHHHhhC
Q 018882 261 LRFIDNS 267 (349)
Q Consensus 261 ~~~~~~~ 267 (349)
-++....
T Consensus 280 s~~A~~L 286 (421)
T PRK12798 280 SERALKL 286 (421)
T ss_pred HHHHHHh
Confidence 6665543
No 453
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.99 E-value=80 Score=20.35 Aligned_cols=54 Identities=15% Similarity=0.016 Sum_probs=28.0
Q ss_pred HhcCChhhHHHHHHHH----hhCCCCc----hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 249 GHAGKPEKLGSVLRFI----DNSDIML----DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 249 ~~~~~~~~a~~~~~~~----~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+.|++..|.+.+... ...+... -....-.+.......|++++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567777765544433 2222221 0112223444556667777777777776654
No 454
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.60 E-value=2.7e+02 Score=26.37 Aligned_cols=18 Identities=6% Similarity=0.051 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHhcCc
Q 018882 306 PDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~ 323 (349)
-|...|..||.-+...-.
T Consensus 688 ~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 688 DDSELWEDLINYSLDKPE 705 (846)
T ss_pred CCHHHHHHHHHHhhcCcH
Confidence 377888888876655443
No 455
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.52 E-value=57 Score=18.49 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=17.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 309 (349)
+.-++.+.|+++.|.+..+.+.+. .|+-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 445566777777777777776665 44443
No 456
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.19 E-value=2e+02 Score=24.70 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSIN--TFNILLDSYG--KAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 196 (349)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566666666666666665 343333 2333333332 24455666666665544
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.33 E-value=3.5e+02 Score=27.25 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHccCCHHHHHHH
Q 018882 101 YNTLIDAYGRAKMFAEMELTLVKMLSED---CEPDVWTMNCTLRAFGNSGQIDTMEKC 155 (349)
Q Consensus 101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (349)
|..+++.+-+.+..+.+.++-...++.- .+.-..+++.+.+.....|.+-+|...
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a 1043 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA 1043 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH
Confidence 4455556666666666666555554431 111123445555555566665555443
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=44.00 E-value=2.4e+02 Score=25.20 Aligned_cols=239 Identities=12% Similarity=0.106 Sum_probs=122.4
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcc------CcHHHHHHHHHHHhccC-CC-cchhhHHHHHHHHHccCCHHHHHHH
Q 018882 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRA------KMFAEMELTLVKMLSED-CE-PDVWTMNCTLRAFGNSGQIDTMEKC 155 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (349)
.+|++..+. -|+...|+..|..|... ........+++.....+ .. -....|..+...++......++
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~--- 377 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV--- 377 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH---
Confidence 556655543 44666666666555432 23444455555544332 12 2234455555555554443332
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHH-HHHHHHHHhcCCCCchhhHHHHHHHHHhcCC-hHH-H-HHHHHHHH
Q 018882 156 YEKFQSAGIQPSINTFNILLDSYGKAG-HFEKM-SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD-LKQ-M-EYLFRLMR 230 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-a-~~~~~~~~ 230 (349)
-..+...++..+...|-.-+....+.. +++-- ..++..+...-..+....|+... .++ +.. . ..++..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 222222233445555554444444221 22221 22233333332233334444433 222 111 1 12233333
Q ss_pred hCCCCCcHHHH-HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhc-CCC
Q 018882 231 SERIKPSCVTL-CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG---RLKCFAEMKGVLEVMQQR-GCK 305 (349)
Q Consensus 231 ~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~-~~~ 305 (349)
..+ .|+..++ +.++.-+.+.|-..+|...+..+.... +|+...|..+|..-. .+| ..-+..+++.|... |
T Consensus 453 s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg-- 527 (568)
T KOG2396|consen 453 SVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG-- 527 (568)
T ss_pred Hhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--
Confidence 332 3444443 456666777788888888888877653 467777777765432 233 66777888887765 5
Q ss_pred CCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 306 PDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
.|+..|.-.+.--...|..+.+-.++.+..++
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 57777877777667788888777766555543
No 459
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.96 E-value=98 Score=20.77 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467788888888888888888888776
No 460
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.75 E-value=1.5e+02 Score=22.92 Aligned_cols=49 Identities=8% Similarity=0.090 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhcCCCC----c-hHHHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 80 DKVQALLSDMSTQGIRP----N-TVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
..|.+.|.+.....-.| + ......+.....+.|+.++|.+.|.++...+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34566666555432111 1 1222334455556666666666666666543
No 461
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.51 E-value=1.6e+02 Score=23.27 Aligned_cols=118 Identities=12% Similarity=-0.043 Sum_probs=64.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhcCChh
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTI-VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV-TLCSLVRAYGHAGKPE 255 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 255 (349)
|.....++.|+..|.+....+ |+. .-|..-+..+.+..+++.+..--+...+. .|+.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 444556777777666555543 444 44455566666777777776655555443 44433 2333445556667777
Q ss_pred hHHHHHHHHh----hCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 256 KLGSVLRFID----NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 256 ~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
.|+..+.+.. ...+.+-......|..+--+.-...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7777776653 2334444455555555444444444455544433
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.06 E-value=2.5e+02 Score=27.11 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
+...|+.+.|++.-.++- +..+|..|.......|+.+-|+..|++... |..|--.|.-.|+.++.
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
.++.+.+...+ |... ....-.-.|+.++-.++++ +.-.+..--..-..+|.-+.|.++.+.+.+
T Consensus 718 ~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~---------n~g~~~laylta~~~G~~~~ae~l~ee~~~- 781 (1202)
T KOG0292|consen 718 SKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILE---------NGGQLPLAYLTAAAHGLEDQAEKLGEELEK- 781 (1202)
T ss_pred HHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHH---------hcCcccHHHHHHhhcCcHHHHHHHHHhhcc-
Q ss_pred hhhhhccCCCC
Q 018882 338 DETCLAMKRPD 348 (349)
Q Consensus 338 ~~~~~~~~~p~ 348 (349)
+...++...|.
T Consensus 782 ~~~~lP~~~~~ 792 (1202)
T KOG0292|consen 782 QVPSLPEVDPN 792 (1202)
T ss_pred ccCCCCCCCCc
No 463
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=42.58 E-value=2.5e+02 Score=25.07 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=100.9
Q ss_pred CcchhhHHHHHHHHHcc------CCHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCC
Q 018882 130 EPDVWTMNCTLRAFGNS------GQIDTMEKCYEKFQSAG-IQP-SINTFNILLDSYGKAGHFEK-MSAVMEYMQKYHYS 200 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~ 200 (349)
.|+...|+..|..|... ..+.....+++...+.+ ..+ ....|..+.-.++......+ |..+..+. +.
T Consensus 312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~ 387 (568)
T KOG2396|consen 312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FR 387 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hc
Confidence 45666676666665432 23455556666655543 222 34456666666665554433 33333233 33
Q ss_pred CchhhHHHHHHHHHhc-CChHHH-HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hhhH--HHHHHHHhhCCCCchHHH
Q 018882 201 WTIVTYNIVIDAFGRA-GDLKQM-EYLFRLMRSERIKPSCVTLCSLVRAYGHAGK-PEKL--GSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~~~~~~~~~~ 275 (349)
.+...|-.-+...... .+.+-. ..++......-..+....|++.. .++ +... ..++..+...+ .|+..+
T Consensus 388 ~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~t 461 (568)
T KOG2396|consen 388 DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVT 461 (568)
T ss_pred chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceee
Confidence 3555555555544422 233222 22333333322233344444443 222 2211 12223333332 234333
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HhcCchhhhHHHHHHHH
Q 018882 276 -FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY--STNGMKNHAKEFQDLVE 335 (349)
Q Consensus 276 -~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 335 (349)
-+.++.-+.+.|-.++|..++..+... .+|+...|..+|..- ..+-+...++++++.+.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 456788888999999999999999886 356778888887642 12223566666666553
No 464
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.39 E-value=95 Score=24.34 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=42.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCC
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP 57 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 57 (349)
+.+.|+.+.|.+++++.... .+.....|..+....-+.|+++.|.+-|++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 45678888888888888776 24457778888888888888888888888887763
No 465
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.34 E-value=1.9e+02 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=16.7
Q ss_pred CchhhHHHHHHHHHhcCChHHHHH
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
-|+..|..+..+|.-.|+...+.+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHH
Confidence 467777788888777776655543
No 466
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.26 E-value=99 Score=20.39 Aligned_cols=19 Identities=0% Similarity=-0.228 Sum_probs=10.6
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 018882 72 SCLKAFAFDKVQALLSDMS 90 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~ 90 (349)
.|.+.|+.+.+.+-|+.=+
T Consensus 81 Lys~~G~~e~a~~eFetEK 99 (121)
T COG4259 81 LYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHhhcCChHHHHHHHHHhh
Confidence 3555666666665555533
No 467
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.27 E-value=1.8e+02 Score=23.02 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCc--hHHHHHHHHHHhccCcHHHHHHHH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQ--GIRPN--TVTYNTLIDAYGRAKMFAEMELTL 121 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~ 121 (349)
..|.-....+.+.|+-+.|-..|-++-+. .+.|. +.+...-+..|...|++..|-+..
T Consensus 55 ~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~ 116 (288)
T KOG1586|consen 55 DAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHH 116 (288)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhh
Confidence 34444455555555444444433333221 11222 123333445566666665554433
No 468
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.19 E-value=75 Score=18.69 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=20.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-----HhcCchhhhHH
Q 018882 284 GRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-----STNGMKNHAKE 329 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~ 329 (349)
...|++=+|-++++++=.....|....+..+|... .+.|+.+.|.+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555554332223344444444432 33455554444
No 469
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=41.11 E-value=1.8e+02 Score=23.03 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
+..+...+.-++...|+...+..+++.+..
T Consensus 131 ~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 131 DPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp SHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 444444444555555566666666666543
No 470
>PRK09857 putative transposase; Provisional
Probab=40.65 E-value=2e+02 Score=23.54 Aligned_cols=66 Identities=6% Similarity=0.054 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
+..++......++.++..++++.+.+.. +......-.+..-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444444445566655666666555442 22223333455566666666677788888888877644
No 471
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.33 E-value=1.8e+02 Score=22.74 Aligned_cols=119 Identities=10% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCchHHHHH--HHHHHhccCc
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI-RPNTVTYNT--LIDAYGRAKM 113 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~--l~~~~~~~~~ 113 (349)
..+.+......+.-+++.+. .+...-+|.|+--|.-...+.+|...|..-..-.. ..+..+++. -|......|+
T Consensus 3 ~~~~~~~~~~~~w~~~~~~~---~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~ 79 (228)
T KOG2659|consen 3 QGRSSSFSTKEEWEEQLMKV---SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQ 79 (228)
T ss_pred CCcCcccCchhhhHHHHhcc---CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHH----HHccCCHHHHHHHHHH
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRA----FGNSGQIDTMEKCYEK 158 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~ 158 (349)
.++|++...++...-+.-|...+..+... ..+.|..++|+++.+.
T Consensus 80 Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 80 IEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 472
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=39.66 E-value=2.1e+02 Score=26.83 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=18.3
Q ss_pred CCCCcHHHHHHHHHHHHhcCC----hhhHHHHHHHHh
Q 018882 233 RIKPSCVTLCSLVRAYGHAGK----PEKLGSVLRFID 265 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~ 265 (349)
|.+.|...|..|+.++....+ .+++.++++.++
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK 248 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLK 248 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHH
Confidence 566666667777666655433 344444444443
No 473
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.62 E-value=1.1e+02 Score=20.31 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=7.6
Q ss_pred HHHHhcCChhHHHHHHHH
Q 018882 71 KSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~ 88 (349)
.-|...++.++|...+.+
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444444444444444
No 474
>PRK09857 putative transposase; Provisional
Probab=39.15 E-value=2.2e+02 Score=23.40 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=10.0
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCC
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
+-+...|.-+++..+...|...|+
T Consensus 248 EqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 248 ERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333333333344444444444444
No 475
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.09 E-value=1.2e+02 Score=20.37 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=18.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhc
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466667777777777777777766665
No 476
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=38.92 E-value=2.3e+02 Score=23.55 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=13.7
Q ss_pred HccCCHHHHHHHHHHHHhcCCC
Q 018882 144 GNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+..+++....+..+++.+.|..
T Consensus 266 a~S~d~~~~v~~~Rei~~sg~~ 287 (346)
T KOG0989|consen 266 ALSADTPNTVKRVREIMRSGYS 287 (346)
T ss_pred HHccChHHHHHHHHHHHHhccC
Confidence 4556666666666666666654
No 477
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.37 E-value=1.8e+02 Score=22.22 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
....+.++..+...|+++.|.++|.-+....
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 4567788888888999999999998887653
No 478
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.32 E-value=2.1e+02 Score=23.11 Aligned_cols=151 Identities=13% Similarity=-0.001 Sum_probs=90.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR----SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK---- 75 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 75 (349)
..+++..+...+......+ +......+...+.. ..+...|.++|+.....+ +......+...+..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG----LAEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCCc
Confidence 4567788888888877754 22444444444443 346788999999776542 33344445555554
Q ss_pred cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC-------cHHHHHHHHHHHhccCCCcchhhHHHHHHHHH----
Q 018882 76 AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-------MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG---- 144 (349)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 144 (349)
..+..+|..++++..+.|..+...+...+...|.... +...|...+.+....+ +......+...|.
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 3488999999999999986543233444444444431 2336777777777665 2222333333332
Q ss_pred ccCCHHHHHHHHHHHHhcCC
Q 018882 145 NSGQIDTMEKCYEKFQSAGI 164 (349)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~ 164 (349)
-..+.++|..+|....+.|.
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 23466777777777777663
No 479
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.25 E-value=1.3e+02 Score=26.40 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=50.2
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch---HHHHHHHHHHhcc
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT---VTYNTLIDAYGRA 111 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 111 (349)
.+.+..|.++-...+++.-. .+..++.|-++=+.+.|-.|+++-+.. +.+.|..|+. .-.+.|+-++ ..
T Consensus 89 WaAsaAGHl~vVk~L~~~ga---~VN~tT~TNStPLraACfDG~leivKy----LvE~gad~~IanrhGhTcLmIa~-yk 160 (615)
T KOG0508|consen 89 WAASAAGHLEVVKLLLRRGA---SVNDTTRTNSTPLRAACFDGHLEIVKY----LVEHGADPEIANRHGHTCLMIAC-YK 160 (615)
T ss_pred hHHhccCcHHHHHHHHHhcC---ccccccccCCccHHHHHhcchhHHHHH----HHHcCCCCcccccCCCeeEEeee-cc
Confidence 34445566655555544431 223344444445555555566654443 3455544432 2223333222 23
Q ss_pred CcHHHHHHHHHHHhccCCCcchhhH--HHHHHHHHccCCHHHH
Q 018882 112 KMFAEMELTLVKMLSEDCEPDVWTM--NCTLRAFGNSGQIDTM 152 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a 152 (349)
|+.+-+.-+++ .|..++..++ |+.+.-|+..|..+-.
T Consensus 161 Gh~~I~qyLle----~gADvn~ks~kGNTALH~caEsG~vdiv 199 (615)
T KOG0508|consen 161 GHVDIAQYLLE----QGADVNAKSYKGNTALHDCAESGSVDIV 199 (615)
T ss_pred CchHHHHHHHH----hCCCcchhcccCchHHHhhhhcccHHHH
Confidence 55554444433 3444444333 5667777777776643
No 480
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=37.36 E-value=3.1e+02 Score=24.73 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=45.6
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHH---------------HHHHHH
Q 018882 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN---------------TLIDAY 108 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~l~~~~ 108 (349)
+.....+..+....++.-+...+..+.+ ...|...++..+++++...|- +..+.. .++.+
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~~- 255 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLEA- 255 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHHH-
Confidence 3455555555555555555555544443 356677777777777766642 111111 11111
Q ss_pred hccCcHHHHHHHHHHHhccCCCcch
Q 018882 109 GRAKMFAEMELTLVKMLSEDCEPDV 133 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~~~~~ 133 (349)
.-.++..+++..++++.+.|..|..
T Consensus 256 i~~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 256 ILKGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred HHccCHHHHHHHHHHHHHhCcCHHH
Confidence 2345666677777777666655543
No 481
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.97 E-value=89 Score=19.81 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 11 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
...+++.+.+.|+ -+. ...-..-....+.+++.++++.+...+ ..+|..+..++...|...-|
T Consensus 18 ~~~v~~~L~~~~V-lt~---~~~e~I~~~~tr~~q~~~LLd~L~~RG-----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGV-FTP---DMIEEIQAAGSRRDQARQLLIDLETRG-----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCC-CCH---HHHHHHHcCCCHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhcCchHHH
Confidence 3457788888763 222 222233345567889999999888763 46788888888777765544
No 482
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=36.61 E-value=3.9e+02 Score=25.66 Aligned_cols=313 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTAL-LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 80 (349)
+.++|+.+.|.+.+++.... .+-...|... +.++.++-+...-.++-.++...-| ..+...|-..+....-..++.
T Consensus 335 ~lR~G~lk~A~~~l~e~~~~--~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~-~~~~DpyK~AvY~iig~cd~~ 411 (835)
T KOG2168|consen 335 LLRCGDLKAASQFLNENKDF--FEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELG-RNSTDPYKLAVYKIIGGCDLR 411 (835)
T ss_pred HHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhc-cccCChHHHHHHHHHhcCccc
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccC----------cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK----------MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
.-..-+-.-. +...|-.|+-.....+ ..+.-..++...-..-..++...-.....++.-.|+++
T Consensus 412 ~~~~ev~~ti------ED~LW~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG~sYFt~ng~~p~~Yf~~LlLsgqfe 485 (835)
T KOG2168|consen 412 RDLPEVADTI------EDFLWFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYGESYFTNNGSQPLLYFQVLLLSGQFE 485 (835)
T ss_pred cccHHHHhHH------HHHHHHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhHHHhhccCCCChHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.|+.++......+ .+.+.+...+.-+.-.+......+-+--+.....++. ..-+..|+.+|.+.=....+...++..
T Consensus 486 ~AI~fL~~~~~~~--~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~~d~~~al~y~ 563 (835)
T KOG2168|consen 486 RAIEFLHREEPNR--IDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFARLIIAYTKSFEYTDTRVALQYY 563 (835)
T ss_pred HHHHHHHhhcCCc--chhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHHHHHHHHHHHHHhccchhhhhee
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCC
Q 018882 230 RSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR--LKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
.-....++..--+..+.+.+..=--.+ +-|..+.. .+.||..-...++.-|.. .-...-+.++-++..+.|.
T Consensus 564 ~~lr~~~d~q~~~l~l~~v~~lVl~t~--~~f~~iLG-~i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA~~a~~~G~--- 637 (835)
T KOG2168|consen 564 YLLRLNKDPQGSNLFLKCVCELVLETE--EEFDLILG-KIKPDGSREPGLLDEFLPLIEDLQKIILEVASEADEDGL--- 637 (835)
T ss_pred eeecccCChhHHHHHHHHHHHHHHhcc--ccHHHHhc-ccCCCCCCCcchHhhhccchhhHHHHHHHHHHHHHhcCC---
Q ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHH
Q 018882 308 KVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
|.--|..|...|+++.|.++..+.
T Consensus 638 ---~~~sI~LY~lag~yd~al~link~ 661 (835)
T KOG2168|consen 638 ---FEDAILLYHLAGDYDKALELINKL 661 (835)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHH
No 483
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=36.47 E-value=4.8e+02 Score=26.58 Aligned_cols=134 Identities=12% Similarity=-0.022 Sum_probs=78.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHH-------HhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLM-------RSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI 269 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 269 (349)
....|..+...+.+.++.++|...-... .....+-+...|..+...+...+....|...+...... +.
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 4566777777888888888887655433 11222233445566655555666766677666554321 11
Q ss_pred -Cch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--CCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 270 -MLD-TVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GC--KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 270 -~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
.|. ..+++.+-..+...++++.|.++++..... |. -++..++..+.+.+...+++..|....+.-.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 233 333344444445557888888888777654 11 1245566777777777777776666544333
No 484
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.19 E-value=2.2e+02 Score=22.62 Aligned_cols=116 Identities=15% Similarity=0.023 Sum_probs=59.8
Q ss_pred HcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHH-HHHHHHHHhccCcHH
Q 018882 38 GRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVT-YNTLIDAYGRAKMFA 115 (349)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 115 (349)
....++..|+.-|.+.... .|+. .-|..-+-++.+..+++.+..--.+.++. .||..- ...+-.+......++
T Consensus 21 f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 3445566666655555544 3544 33455566666666776665554444443 444432 233445555666677
Q ss_pred HHHHHHHHHhc----cCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018882 116 EMELTLVKMLS----EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 116 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
+|+..+.+... ..+.+.......|..+--+.=...+..++.+.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77766666532 23334444555555543333334444444444
No 485
>COG0819 TenA Putative transcription activator [Transcription]
Probab=36.17 E-value=2.1e+02 Score=22.30 Aligned_cols=101 Identities=8% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH-----------HHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL-----------RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
+.+.+....|....|+..+...+..|++.+....+ ..+.+....+....|...|..|....-.+.+..+
T Consensus 98 ~~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~ 177 (218)
T COG0819 98 DELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEEL 177 (218)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHH
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCchhhh
Q 018882 296 LEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 296 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 327 (349)
.+.+.+..-.-+..-+..+...+...-+++.+
T Consensus 178 ~~~ld~~~~~~~~~~~~~l~~iF~~ss~~E~~ 209 (218)
T COG0819 178 EALLDSLAENSSEEELEKLKQIFLTASRFELA 209 (218)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
No 486
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.06 E-value=3.2e+02 Score=24.45 Aligned_cols=32 Identities=3% Similarity=-0.014 Sum_probs=19.1
Q ss_pred cCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 92 QGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
.|+..+......++.. ..|+...|+.+++++.
T Consensus 196 Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 196 ENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred cCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 4555566555554433 3577777777777654
No 487
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=35.24 E-value=1.5e+02 Score=20.47 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 018882 7 QPEKAHELFQAMVDEG-CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 85 (349)
++..|+..+++..... .+++......+|..+--. ++-++++++......|+. +..+-..+++...+.|-++....+
T Consensus 5 ~~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~t--~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~W 81 (124)
T PF08780_consen 5 NFKKALSRLEEALEKYEDPLSELERDGVIQRFEFT--FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEIW 81 (124)
T ss_dssp HHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHHH
Confidence 4567777777777641 133444555555554333 567777777655554532 222225555555555555544443
Q ss_pred HHH
Q 018882 86 LSD 88 (349)
Q Consensus 86 ~~~ 88 (349)
++-
T Consensus 82 l~m 84 (124)
T PF08780_consen 82 LDM 84 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 488
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=35.20 E-value=1.1e+02 Score=21.73 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=20.2
Q ss_pred ccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 110 RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
+.|-..+...+++++.+.|+..+...|+.+++-
T Consensus 121 ~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 121 SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 445555666666666666666666666655543
No 489
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=35.11 E-value=71 Score=19.59 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=20.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 018882 75 KAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (349)
-.++.+.+.+++++....|.+|.......+..+..+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345666666666666666655555544445544433
No 490
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.46 E-value=2.9e+02 Score=23.53 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=29.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 72 SCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
.+...+|++....++ .+. +--..++..+...+...|+.+.|.+++++..
T Consensus 19 ~~v~~~Dp~~l~~ll---~~~--PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 19 AAVQSHDPNALINLL---QKN--PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHccCHHHHHHHH---HHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445555544443 222 3355666777777888888888877777653
No 491
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.97 E-value=2.7e+02 Score=22.94 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCC----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 184 FEKMSAVMEYMQKYHY----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 184 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
.+.|.+.|+.....+. ..++.....+.....+.|+.+.-..+++.... .++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566677777665311 33555556666666677775555555555443 3355666777788888888888888
Q ss_pred HHHHHhhCC
Q 018882 260 VLRFIDNSD 268 (349)
Q Consensus 260 ~~~~~~~~~ 268 (349)
+++.+...+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 888877754
No 492
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.78 E-value=2.4e+02 Score=22.35 Aligned_cols=171 Identities=14% Similarity=0.131 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018882 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 89 (349)
+|.++..+..+.. .++.... .+.-.+.+++|-++|.+..... .-...|+....++++ |-++.
T Consensus 3 ~a~~l~k~AEkK~-~~s~gF~-----lfgg~~k~eeAadl~~~Aan~y---klaK~w~~AG~aflk------aA~~h--- 64 (288)
T KOG1586|consen 3 DAVQLMKKAEKKL-NGSGGFL-----LFGGSNKYEEAAELYERAANMY---KLAKNWSAAGDAFLK------AADLH--- 64 (288)
T ss_pred cHHHHHHHHHHhc-ccCCccc-----ccCCCcchHHHHHHHHHHHHHH---HHHHhHHHHHHHHHH------HHHHH---
Confidence 4556666665553 2222111 4555668888888887764321 111222333332222 11111
Q ss_pred HhcCCCCch-HHHHHHHHHHhccCcHHHHHHHHHHHhcc----C-CCcchhhHHHHHHHHHcc-CCHHHHHHHHHHHHhc
Q 018882 90 STQGIRPNT-VTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVWTMNCTLRAFGNS-GQIDTMEKCYEKFQSA 162 (349)
Q Consensus 90 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 162 (349)
.+.|-+.|. .+|.-..++| +..+.++|.+.++..++. | ...-......+...|-.. .++++|+..|++.-+.
T Consensus 65 ~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 65 LKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 122333333 3455455555 444777777766655432 1 011111122233334332 4555566555554432
Q ss_pred --CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018882 163 --GIQPSINT---FNILLDSYGKAGHFEKMSAVMEYMQKYHY 199 (349)
Q Consensus 163 --~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (349)
|-..+... +--+...-+..+++.+|+++|+++-...+
T Consensus 144 yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 144 YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111111 11122223445666667777666655443
No 493
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=32.53 E-value=3e+02 Score=23.13 Aligned_cols=90 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC--c
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSA---GIQPSINTF--NILLDSYGKAGHFEKMSAVMEYMQK-----YHYSW--T 202 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~--~ 202 (349)
....++...-+.++.++|.++++++.+. .-.|+...| ....+++...|+..++.+++++..+ .+++| .
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Q ss_pred hhhHHHHHHHHHhcCChHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
..-|..--..|-..|++.....
T Consensus 157 ~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHHHH
No 494
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=32.41 E-value=4.5e+02 Score=25.11 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018882 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
.....+.+++.+ +.++++.|...+..|.+.|..|....-..++.+.
T Consensus 258 hyd~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~as 303 (725)
T PRK13341 258 HFDTISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAAS 303 (725)
T ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444444433 4466777777777777777655544444444443
No 495
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.84 E-value=3.5e+02 Score=23.58 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
.++.+.|...+..|.+.|..|....-..++.++-..
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 356777777777777776665544444444443333
No 496
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.80 E-value=5.7e+02 Score=26.08 Aligned_cols=154 Identities=8% Similarity=-0.060 Sum_probs=92.2
Q ss_pred HHccCCHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchhhHHHH
Q 018882 143 FGNSGQIDTMEK------CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ-------KYHYSWTIVTYNIV 209 (349)
Q Consensus 143 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l 209 (349)
....|.+.++.+ ++......-.+.....|..+...+-+.++.++|...-.... .....-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 44422222124456678888888889999999987754431 11112234556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----C--CCchHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSE-------RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----D--IMLDTVF 275 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~ 275 (349)
.......+....|...+.+.... ..+|...+++.+-..+...++.+.|.+.++.+.+. + .-.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 65556666777777777666432 22444455555555555567888888888777542 1 1135567
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 018882 276 FNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~ 296 (349)
+..+.+.+...+++..|....
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 777777777777777665443
No 497
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.68 E-value=4e+02 Score=24.19 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhh
Q 018882 31 TALLSAYGRSGLFDKAFSLLEHMK 54 (349)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~ 54 (349)
..++.-|.+.+++++|+.++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346667777788888887777664
No 498
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=31.60 E-value=2.2e+02 Score=24.00 Aligned_cols=27 Identities=11% Similarity=0.329 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.-.++..|.+.|.+++|.++.....+.
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L 135 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRL 135 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHH
Confidence 346788888888888888877766543
No 499
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.58 E-value=3.5e+02 Score=23.53 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=38.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSA------GI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
...+++.++-.||+..|+++++.+.-. .+ .....++..+.-+|.-.+++.+|.+.|..+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888887777664321 11 1234456666677777888888888877653
No 500
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=30.80 E-value=1.8e+02 Score=19.83 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhc-CCCC-chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018882 80 DKVQALLSDMSTQ-GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 80 ~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
+++.+.+.++... |+.| |..+--++...+.....+. -...-...|...+..|+. |+++.....+=
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~----~~~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll 72 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPS----DEDIKDDSGLELNWKTFT---------GEYDDIYEALL 72 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCC----CCccCCCCCeEEeeeeec---------CchHHHHHHHH
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 158 KFQSAGIQPSINTFNILLDSYGKAG 182 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (349)
.+.. |...+...+...+.++...|
T Consensus 73 ~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 73 KQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHHh
Done!