Query 018882
Match_columns 349
No_of_seqs 701 out of 1382
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 07:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.7E-35 1.6E-39 250.3 22.1 186 136-321 29-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.4E-34 4.8E-39 247.4 23.6 202 13-215 11-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.2E-32 4.1E-37 244.2 34.8 236 97-337 304-545 (597)
4 2xpi_A Anaphase-promoting comp 100.0 8.3E-33 2.8E-37 245.3 32.8 329 2-340 210-582 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-28 8.8E-33 205.0 37.0 325 5-339 46-370 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 9.6E-28 3.3E-32 201.5 36.4 326 3-338 10-335 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 3.6E-25 1.2E-29 189.5 34.5 322 9-339 9-360 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 2.3E-24 8E-29 184.5 36.1 302 2-315 36-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 5E-24 1.7E-28 185.5 30.6 329 2-339 16-446 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 6.4E-22 2.2E-26 164.0 36.5 291 4-302 15-335 (359)
11 2gw1_A Mitochondrial precursor 99.9 3.7E-23 1.3E-27 179.9 29.7 330 2-340 49-481 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 7E-22 2.4E-26 163.8 35.8 307 26-340 2-338 (359)
13 3fp2_A TPR repeat-containing p 99.9 2.4E-22 8.2E-27 175.8 33.2 330 2-340 35-494 (537)
14 3hym_B Cell division cycle pro 99.9 6.8E-22 2.3E-26 162.0 31.5 295 23-325 18-322 (330)
15 1fch_A Peroxisomal targeting s 99.9 9E-22 3.1E-26 163.9 26.8 296 37-337 35-359 (368)
16 3hym_B Cell division cycle pro 99.9 8E-21 2.7E-25 155.6 29.9 280 3-290 33-322 (330)
17 1fch_A Peroxisomal targeting s 99.9 3.6E-21 1.2E-25 160.2 25.7 288 5-298 38-355 (368)
18 4eqf_A PEX5-related protein; a 99.9 2.9E-21 9.9E-26 160.7 21.1 268 62-333 64-352 (365)
19 3fp2_A TPR repeat-containing p 99.9 1.3E-19 4.5E-24 158.5 32.6 307 26-341 24-411 (537)
20 4eqf_A PEX5-related protein; a 99.9 2.7E-20 9.3E-25 154.8 25.9 267 26-298 64-352 (365)
21 3cv0_A Peroxisome targeting si 99.9 1E-19 3.4E-24 148.9 27.3 265 26-297 20-310 (327)
22 3cv0_A Peroxisome targeting si 99.9 1.2E-19 4E-24 148.5 24.0 274 62-341 20-319 (327)
23 1b89_A Protein (clathrin heavy 99.9 6.7E-21 2.3E-25 156.3 14.4 284 2-330 13-304 (449)
24 3mkr_A Coatomer subunit epsilo 99.8 2E-18 6.7E-23 138.3 26.8 251 35-302 7-264 (291)
25 2xm6_A Protein corresponding t 99.8 6.3E-16 2.2E-20 133.6 42.1 305 6-338 93-433 (490)
26 3mkr_A Coatomer subunit epsilo 99.8 3.4E-18 1.2E-22 136.9 25.9 255 70-340 6-267 (291)
27 2xm6_A Protein corresponding t 99.8 6.2E-16 2.1E-20 133.6 41.5 306 5-338 56-397 (490)
28 3spa_A Mtrpol, DNA-directed RN 99.8 6.1E-20 2.1E-24 162.6 11.8 118 168-285 127-248 (1134)
29 3spa_A Mtrpol, DNA-directed RN 99.8 5.1E-20 1.7E-24 163.1 10.4 135 202-343 126-264 (1134)
30 2ooe_A Cleavage stimulation fa 99.8 1.6E-15 5.4E-20 132.4 38.2 329 4-339 24-494 (530)
31 4g1t_A Interferon-induced prot 99.8 1.5E-16 5.1E-21 136.9 30.5 334 2-340 61-462 (472)
32 2pl2_A Hypothetical conserved 99.8 7.1E-17 2.4E-21 123.7 22.2 199 24-229 2-211 (217)
33 3uq3_A Heat shock protein STI1 99.8 2.1E-16 7.2E-21 124.5 25.0 224 65-302 7-236 (258)
34 1b89_A Protein (clathrin heavy 99.8 4.3E-18 1.5E-22 139.8 15.2 251 39-333 15-265 (449)
35 3uq3_A Heat shock protein STI1 99.8 2.4E-16 8.2E-21 124.2 24.4 230 97-340 4-239 (258)
36 2pl2_A Hypothetical conserved 99.8 1.4E-16 4.7E-21 122.1 21.2 111 182-296 98-208 (217)
37 3u4t_A TPR repeat-containing p 99.8 7.7E-16 2.6E-20 122.4 23.5 164 136-302 77-250 (272)
38 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.6E-16 1.2E-20 124.5 21.3 222 100-331 45-269 (275)
39 3u4t_A TPR repeat-containing p 99.7 2.1E-15 7E-20 119.9 25.6 248 26-279 2-261 (272)
40 1ouv_A Conserved hypothetical 99.7 2.2E-14 7.5E-19 114.1 30.5 224 26-268 5-252 (273)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.3E-16 7.9E-21 125.6 19.0 247 4-296 17-269 (275)
42 2ooe_A Cleavage stimulation fa 99.7 3.4E-14 1.2E-18 123.9 34.2 141 15-161 2-158 (530)
43 1ouv_A Conserved hypothetical 99.7 3.4E-14 1.1E-18 113.0 31.1 225 61-303 4-252 (273)
44 2h6f_A Protein farnesyltransfe 99.7 2.8E-15 9.5E-20 124.1 25.0 196 28-229 98-302 (382)
45 4g1t_A Interferon-induced prot 99.7 3.7E-14 1.2E-18 122.0 33.0 310 25-339 49-403 (472)
46 2ho1_A Type 4 fimbrial biogene 99.7 8.9E-15 3E-19 114.8 26.4 199 28-231 38-237 (252)
47 2q7f_A YRRB protein; TPR, prot 99.7 1.3E-15 4.4E-20 118.9 20.8 201 26-232 22-222 (243)
48 2vq2_A PILW, putative fimbrial 99.7 1.2E-14 4.2E-19 111.8 26.0 203 26-232 7-211 (225)
49 2h6f_A Protein farnesyltransfe 99.7 9.3E-15 3.2E-19 121.0 26.6 248 63-319 97-364 (382)
50 2ho1_A Type 4 fimbrial biogene 99.7 7.9E-15 2.7E-19 115.1 25.2 165 135-302 73-238 (252)
51 2vq2_A PILW, putative fimbrial 99.7 6.6E-15 2.3E-19 113.3 24.2 162 137-300 46-209 (225)
52 3sf4_A G-protein-signaling mod 99.7 4.5E-16 1.6E-20 131.0 18.7 300 25-326 7-365 (406)
53 2q7f_A YRRB protein; TPR, prot 99.7 1.9E-15 6.4E-20 118.0 20.7 198 100-302 25-222 (243)
54 4a1s_A PINS, partner of inscut 99.7 4.5E-15 1.5E-19 125.3 19.6 272 29-302 50-372 (411)
55 4a1s_A PINS, partner of inscut 99.7 2.8E-15 9.5E-20 126.6 18.0 275 64-339 49-374 (411)
56 3sf4_A G-protein-signaling mod 99.7 1.1E-14 3.9E-19 122.5 20.5 279 60-339 6-338 (406)
57 1xi4_A Clathrin heavy chain; a 99.7 5.2E-13 1.8E-17 122.8 32.1 268 2-320 1059-1326(1630)
58 3ulq_A Response regulator aspa 99.7 4.3E-14 1.5E-18 118.1 23.6 234 104-340 109-371 (383)
59 3ro2_A PINS homolog, G-protein 99.7 8.7E-15 3E-19 119.8 18.5 200 28-229 6-249 (338)
60 2ond_A Cleavage stimulation fa 99.7 3.2E-13 1.1E-17 109.2 27.0 235 63-302 8-270 (308)
61 3ulq_A Response regulator aspa 99.7 6E-14 2E-18 117.3 23.4 295 3-302 23-368 (383)
62 1xi4_A Clathrin heavy chain; a 99.7 1.4E-12 4.6E-17 120.1 33.4 280 5-329 1089-1376(1630)
63 3ro2_A PINS homolog, G-protein 99.6 1.1E-14 3.8E-19 119.1 17.5 275 64-339 6-334 (338)
64 2ond_A Cleavage stimulation fa 99.6 6.1E-13 2.1E-17 107.6 26.6 217 9-232 33-270 (308)
65 4abn_A Tetratricopeptide repea 99.6 4.3E-14 1.5E-18 121.2 20.6 216 42-264 83-318 (474)
66 3vtx_A MAMA; tetratricopeptide 99.6 2.2E-13 7.4E-18 101.5 21.8 166 133-302 5-170 (184)
67 3e4b_A ALGK; tetratricopeptide 99.6 3.9E-14 1.3E-18 120.7 19.3 304 4-338 15-388 (452)
68 3e4b_A ALGK; tetratricopeptide 99.6 3.4E-13 1.2E-17 114.9 25.1 314 4-340 47-424 (452)
69 3nf1_A KLC 1, kinesin light ch 99.6 7.1E-15 2.4E-19 119.1 12.6 170 62-231 26-223 (311)
70 3vtx_A MAMA; tetratricopeptide 99.6 5E-13 1.7E-17 99.5 21.6 169 167-339 4-172 (184)
71 3nf1_A KLC 1, kinesin light ch 99.6 2.5E-14 8.6E-19 115.8 15.6 247 26-301 26-306 (311)
72 4abn_A Tetratricopeptide repea 99.6 1.3E-13 4.3E-18 118.3 20.3 215 78-299 83-318 (474)
73 1hz4_A MALT regulatory protein 99.6 1.2E-11 4.2E-16 102.8 28.1 302 29-339 16-351 (373)
74 3q15_A PSP28, response regulat 99.6 3.7E-12 1.3E-16 106.2 25.0 314 24-341 7-369 (378)
75 1hz4_A MALT regulatory protein 99.5 2.9E-11 9.8E-16 100.6 28.3 291 4-302 26-349 (373)
76 3q15_A PSP28, response regulat 99.5 6.1E-12 2.1E-16 104.9 23.7 295 3-302 23-365 (378)
77 4gyw_A UDP-N-acetylglucosamine 99.5 2.3E-12 8E-17 115.0 21.9 164 133-300 9-172 (723)
78 3as5_A MAMA; tetratricopeptide 99.5 5.4E-12 1.9E-16 93.7 19.5 166 170-339 10-175 (186)
79 3as5_A MAMA; tetratricopeptide 99.5 5.1E-12 1.7E-16 93.9 19.2 166 27-197 8-173 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.5 7.1E-12 2.4E-16 111.9 20.2 165 26-195 8-172 (723)
81 4i17_A Hypothetical protein; T 99.5 6.7E-11 2.3E-15 91.1 23.1 196 96-302 5-209 (228)
82 3edt_B KLC 2, kinesin light ch 99.5 1.8E-12 6.1E-17 103.2 14.5 229 3-232 12-281 (283)
83 3edt_B KLC 2, kinesin light ch 99.4 5.4E-12 1.8E-16 100.4 16.8 166 135-301 87-280 (283)
84 4i17_A Hypothetical protein; T 99.4 3.4E-11 1.2E-15 92.8 20.5 199 131-340 5-212 (228)
85 4e6h_A MRNA 3'-END-processing 99.4 5.1E-09 1.7E-13 92.7 34.1 103 5-108 79-195 (679)
86 1qqe_A Vesicular transport pro 99.4 3.6E-11 1.2E-15 96.4 16.9 208 78-300 32-267 (292)
87 4e6h_A MRNA 3'-END-processing 99.3 9.2E-09 3.1E-13 91.1 30.8 206 133-340 343-573 (679)
88 3mv2_B Coatomer subunit epsilo 99.3 1.6E-09 5.6E-14 85.4 23.3 244 34-302 20-282 (310)
89 3mv2_B Coatomer subunit epsilo 99.3 2E-09 6.7E-14 85.0 23.3 79 82-161 85-164 (310)
90 3qky_A Outer membrane assembly 99.3 5E-10 1.7E-14 88.2 20.0 187 25-232 13-224 (261)
91 1qqe_A Vesicular transport pro 99.3 5.6E-10 1.9E-14 89.4 19.6 165 66-230 40-226 (292)
92 3qky_A Outer membrane assembly 99.3 4.4E-10 1.5E-14 88.5 18.5 186 97-302 14-224 (261)
93 3urz_A Uncharacterized protein 99.3 6.3E-10 2.2E-14 84.3 18.6 133 173-311 59-193 (208)
94 2fo7_A Synthetic consensus TPR 99.3 4.5E-10 1.5E-14 78.4 16.0 129 29-161 3-131 (136)
95 2fo7_A Synthetic consensus TPR 99.3 8.6E-10 2.9E-14 76.9 17.2 127 172-301 5-131 (136)
96 2pzi_A Probable serine/threoni 99.2 3.8E-10 1.3E-14 101.1 17.9 174 109-288 402-583 (681)
97 2pzi_A Probable serine/threoni 99.2 4.2E-10 1.4E-14 100.9 17.8 173 144-323 402-583 (681)
98 3urz_A Uncharacterized protein 99.2 1.8E-09 6.1E-14 81.8 18.1 187 64-277 5-194 (208)
99 3rjv_A Putative SEL1 repeat pr 99.2 4E-09 1.4E-13 80.1 20.0 176 10-198 4-198 (212)
100 3dra_A Protein farnesyltransfe 99.2 4.3E-08 1.5E-12 78.1 26.2 221 42-301 48-286 (306)
101 3dra_A Protein farnesyltransfe 99.2 1.1E-07 3.7E-12 75.8 28.3 219 116-339 51-290 (306)
102 4ga2_A E3 SUMO-protein ligase 99.2 7.4E-10 2.5E-14 79.1 13.6 142 107-252 6-148 (150)
103 4ga2_A E3 SUMO-protein ligase 99.2 1.6E-10 5.3E-15 82.7 9.8 120 3-126 8-128 (150)
104 3rjv_A Putative SEL1 repeat pr 99.2 1.1E-08 3.6E-13 77.7 19.9 106 46-162 5-118 (212)
105 3qou_A Protein YBBN; thioredox 99.2 4.1E-09 1.4E-13 84.1 18.3 166 165-334 114-281 (287)
106 2vsy_A XCC0866; transferase, g 99.2 1.2E-09 4.2E-14 96.0 16.6 154 5-163 2-158 (568)
107 3qou_A Protein YBBN; thioredox 99.1 2.3E-09 7.8E-14 85.6 16.1 167 60-230 114-282 (287)
108 2r5s_A Uncharacterized protein 99.1 1.3E-09 4.4E-14 80.2 13.7 75 257-332 93-168 (176)
109 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.2E-08 4E-13 78.4 19.3 186 27-233 4-214 (225)
110 2r5s_A Uncharacterized protein 99.1 2.2E-09 7.6E-14 78.9 14.6 164 134-301 7-172 (176)
111 2ifu_A Gamma-SNAP; membrane fu 99.1 2.3E-09 7.7E-14 86.5 15.7 200 4-230 3-222 (307)
112 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.9E-08 6.7E-13 77.1 20.3 207 98-341 4-217 (225)
113 2uy1_A Cleavage stimulation fa 99.1 1.9E-07 6.6E-12 80.1 28.3 175 150-335 196-411 (493)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 3.8E-09 1.3E-13 85.2 16.9 159 106-265 44-222 (307)
115 2uy1_A Cleavage stimulation fa 99.1 3.8E-07 1.3E-11 78.3 30.0 305 5-334 7-380 (493)
116 2vsy_A XCC0866; transferase, g 99.1 2.4E-09 8.1E-14 94.2 16.8 155 146-304 2-159 (568)
117 3u3w_A Transcriptional activat 99.0 2.5E-07 8.7E-12 74.0 23.5 166 174-339 81-268 (293)
118 3q7a_A Farnesyltransferase alp 99.0 9.1E-07 3.1E-11 71.3 25.3 249 31-302 58-331 (349)
119 3u3w_A Transcriptional activat 99.0 4.7E-08 1.6E-12 78.2 18.0 209 13-231 32-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 7.4E-08 2.5E-12 73.0 18.3 127 136-268 9-151 (213)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.1E-07 3.6E-12 72.2 18.5 130 99-233 7-151 (213)
122 3q7a_A Farnesyltransferase alp 99.0 1.6E-06 5.3E-11 70.0 25.4 240 74-335 65-329 (349)
123 2qfc_A PLCR protein; TPR, HTH, 98.9 9.9E-07 3.4E-11 70.5 23.8 59 275-333 198-262 (293)
124 2qfc_A PLCR protein; TPR, HTH, 98.9 6.6E-07 2.3E-11 71.5 22.7 167 135-301 77-265 (293)
125 1a17_A Serine/threonine protei 98.9 8.7E-08 3E-12 69.3 16.0 133 204-339 14-148 (166)
126 3gw4_A Uncharacterized protein 98.9 3.9E-08 1.3E-12 73.9 14.1 158 144-302 3-176 (203)
127 2e2e_A Formate-dependent nitri 98.9 1.8E-08 6.1E-13 74.1 11.9 123 2-128 20-145 (177)
128 1a17_A Serine/threonine protei 98.9 1.4E-07 4.8E-12 68.2 16.1 129 169-300 14-144 (166)
129 2c2l_A CHIP, carboxy terminus 98.9 2.9E-08 9.8E-13 78.9 12.9 194 26-231 3-198 (281)
130 3gw4_A Uncharacterized protein 98.9 2.7E-08 9.4E-13 74.7 12.1 121 4-125 4-134 (203)
131 2c2l_A CHIP, carboxy terminus 98.9 5.8E-08 2E-12 77.1 14.3 194 98-301 4-198 (281)
132 4gco_A Protein STI-1; structur 98.9 1.3E-07 4.4E-12 65.1 14.2 25 276-300 84-108 (126)
133 4f3v_A ESX-1 secretion system 98.9 3.5E-08 1.2E-12 76.9 12.4 186 40-232 19-237 (282)
134 4gco_A Protein STI-1; structur 98.9 1.4E-07 4.8E-12 64.9 14.0 60 169-229 48-107 (126)
135 2lni_A Stress-induced-phosphop 98.9 1.1E-07 3.8E-12 65.9 13.5 99 26-127 15-113 (133)
136 3gyz_A Chaperone protein IPGC; 98.9 1.1E-07 3.7E-12 67.5 13.4 97 204-302 37-133 (151)
137 1na0_A Designed protein CTPR3; 98.8 2.2E-07 7.4E-12 63.5 14.6 12 215-226 89-100 (125)
138 2lni_A Stress-induced-phosphop 98.8 2.3E-07 7.7E-12 64.3 14.8 60 65-125 18-77 (133)
139 1na0_A Designed protein CTPR3; 98.8 3.1E-07 1.1E-11 62.6 15.3 96 170-267 11-106 (125)
140 2vyi_A SGTA protein; chaperone 98.8 2.4E-07 8E-12 63.9 14.5 90 138-229 17-106 (131)
141 2vyi_A SGTA protein; chaperone 98.8 2.4E-07 8.1E-12 63.9 14.5 118 203-323 12-129 (131)
142 3gyz_A Chaperone protein IPGC; 98.8 1.3E-07 4.3E-12 67.2 12.7 99 168-268 36-134 (151)
143 2e2e_A Formate-dependent nitri 98.8 9.7E-08 3.3E-12 70.1 12.5 119 181-302 23-144 (177)
144 4f3v_A ESX-1 secretion system 98.8 5.5E-07 1.9E-11 70.2 16.8 126 139-267 108-237 (282)
145 2vgx_A Chaperone SYCD; alterna 98.8 8.9E-08 3E-12 68.0 11.5 99 202-302 20-118 (148)
146 1p5q_A FKBP52, FK506-binding p 98.8 2.6E-07 8.9E-12 75.4 15.8 132 167-300 146-292 (336)
147 2vgx_A Chaperone SYCD; alterna 98.8 4.6E-08 1.6E-12 69.5 9.8 113 225-340 9-121 (148)
148 3dss_A Geranylgeranyl transfer 98.7 2.1E-05 7.3E-10 63.1 24.9 137 75-215 41-191 (331)
149 1p5q_A FKBP52, FK506-binding p 98.7 5.2E-07 1.8E-11 73.6 15.9 150 182-334 127-291 (336)
150 2kck_A TPR repeat; tetratricop 98.7 5.8E-07 2E-11 60.0 12.3 100 26-128 5-107 (112)
151 3upv_A Heat shock protein STI1 98.7 9.9E-07 3.4E-11 60.5 13.6 97 204-302 5-101 (126)
152 3upv_A Heat shock protein STI1 98.7 1.1E-06 3.8E-11 60.3 13.8 94 171-266 7-100 (126)
153 1elw_A TPR1-domain of HOP; HOP 98.7 1.3E-06 4.4E-11 58.9 13.9 98 27-127 4-101 (118)
154 1elw_A TPR1-domain of HOP; HOP 98.7 3.3E-06 1.1E-10 56.8 15.7 92 137-230 8-99 (118)
155 4gcn_A Protein STI-1; structur 98.6 1E-06 3.4E-11 60.6 12.5 103 205-310 10-118 (127)
156 2xcb_A PCRH, regulatory protei 98.6 4.8E-07 1.6E-11 63.7 11.1 95 135-231 20-114 (142)
157 2fbn_A 70 kDa peptidylprolyl i 98.6 1.2E-07 4.1E-12 71.1 8.3 88 239-328 89-176 (198)
158 2xcb_A PCRH, regulatory protei 98.6 9.4E-07 3.2E-11 62.2 12.5 99 202-302 17-115 (142)
159 4gcn_A Protein STI-1; structur 98.6 6.8E-07 2.3E-11 61.5 11.3 99 27-127 8-112 (127)
160 3q49_B STIP1 homology and U bo 98.6 1.8E-06 6.2E-11 60.1 13.4 100 201-302 7-106 (137)
161 2kck_A TPR repeat; tetratricop 98.6 1.2E-06 4.1E-11 58.4 11.7 15 144-158 17-31 (112)
162 2dba_A Smooth muscle cell asso 98.6 3.5E-06 1.2E-10 59.4 14.7 98 26-127 27-128 (148)
163 2fbn_A 70 kDa peptidylprolyl i 98.6 1.7E-06 5.9E-11 64.6 13.7 129 171-301 41-185 (198)
164 3q49_B STIP1 homology and U bo 98.6 2.6E-06 8.8E-11 59.3 13.7 101 165-267 6-106 (137)
165 4b4t_Q 26S proteasome regulato 98.6 4.7E-06 1.6E-10 70.5 17.7 197 34-230 11-243 (434)
166 4b4t_Q 26S proteasome regulato 98.6 2E-05 6.9E-10 66.6 21.5 197 105-301 11-244 (434)
167 1elr_A TPR2A-domain of HOP; HO 98.6 1.2E-06 4.1E-11 60.3 11.5 110 204-316 5-120 (131)
168 3sz7_A HSC70 cochaperone (SGT) 98.6 2.5E-06 8.7E-11 61.6 13.7 96 205-302 13-108 (164)
169 3sz7_A HSC70 cochaperone (SGT) 98.6 1.4E-06 4.8E-11 62.9 12.2 103 236-340 9-111 (164)
170 2dba_A Smooth muscle cell asso 98.5 8.6E-06 2.9E-10 57.3 15.5 61 135-196 67-127 (148)
171 3dss_A Geranylgeranyl transfer 98.5 0.00021 7.2E-09 57.4 27.6 184 27-216 26-240 (331)
172 1wao_1 Serine/threonine protei 98.5 7E-07 2.4E-11 76.5 10.8 117 2-122 16-134 (477)
173 1elr_A TPR2A-domain of HOP; HO 98.5 2.7E-06 9.2E-11 58.4 11.9 96 135-231 6-107 (131)
174 3k9i_A BH0479 protein; putativ 98.5 3.8E-07 1.3E-11 61.8 6.9 87 4-92 2-90 (117)
175 1hxi_A PEX5, peroxisome target 98.5 2.1E-06 7.1E-11 58.5 10.5 97 28-127 18-114 (121)
176 1hxi_A PEX5, peroxisome target 98.5 1.8E-06 6.1E-11 58.8 10.1 95 206-302 20-114 (121)
177 1wao_1 Serine/threonine protei 98.4 6E-07 2.1E-11 76.9 8.4 120 175-297 13-134 (477)
178 3ro3_A PINS homolog, G-protein 98.4 3.9E-06 1.3E-10 60.0 11.6 59 171-229 12-75 (164)
179 3ro3_A PINS homolog, G-protein 98.4 1.7E-06 5.8E-11 62.0 9.6 137 203-339 9-160 (164)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 9.9E-06 3.4E-10 69.0 14.7 131 168-300 268-413 (457)
181 2xev_A YBGF; tetratricopeptide 98.3 2.1E-05 7.1E-10 53.9 13.2 92 209-302 8-105 (129)
182 2xev_A YBGF; tetratricopeptide 98.3 4.6E-05 1.6E-09 52.1 14.9 89 141-231 10-104 (129)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.1E-05 3.9E-10 68.7 14.1 130 133-264 268-412 (457)
184 1ihg_A Cyclophilin 40; ppiase 98.3 1E-05 3.4E-10 66.8 13.3 90 237-328 272-361 (370)
185 1ihg_A Cyclophilin 40; ppiase 98.3 1.2E-05 4.1E-10 66.3 13.8 123 170-294 225-362 (370)
186 3k9i_A BH0479 protein; putativ 98.3 2.4E-06 8.1E-11 57.8 8.0 83 147-230 4-88 (117)
187 3rkv_A Putative peptidylprolyl 98.3 1.4E-05 4.9E-10 57.4 12.3 64 238-302 63-126 (162)
188 1dce_A Protein (RAB geranylger 98.3 0.00015 5.3E-09 63.3 20.4 173 149-326 45-244 (567)
189 3rkv_A Putative peptidylprolyl 98.3 1.4E-05 4.7E-10 57.5 11.8 65 203-268 63-127 (162)
190 2hr2_A Hypothetical protein; a 98.3 2.3E-05 7.9E-10 55.2 11.6 65 275-339 59-133 (159)
191 1dce_A Protein (RAB geranylger 98.2 0.00014 4.8E-09 63.5 18.8 175 41-221 43-244 (567)
192 2if4_A ATFKBP42; FKBP-like, al 98.2 7E-06 2.4E-10 66.9 10.0 149 27-197 179-328 (338)
193 2if4_A ATFKBP42; FKBP-like, al 98.2 9.2E-06 3.1E-10 66.3 9.6 150 168-339 179-330 (338)
194 1klx_A Cysteine rich protein B 98.1 9.8E-05 3.3E-09 51.4 12.9 84 143-232 35-126 (138)
195 1klx_A Cysteine rich protein B 98.1 0.0001 3.4E-09 51.3 12.7 111 6-128 9-127 (138)
196 2hr2_A Hypothetical protein; a 98.1 9.5E-05 3.2E-09 52.1 12.2 62 240-302 59-131 (159)
197 3n71_A Histone lysine methyltr 98.1 5.3E-05 1.8E-09 64.7 12.8 124 178-301 319-463 (490)
198 3n71_A Histone lysine methyltr 98.1 5.1E-05 1.7E-09 64.8 12.0 125 212-336 318-463 (490)
199 2kat_A Uncharacterized protein 98.0 3.3E-05 1.1E-09 51.8 8.6 81 9-92 2-82 (115)
200 2l6j_A TPR repeat-containing p 98.0 4.5E-05 1.5E-09 50.6 9.1 89 238-329 4-99 (111)
201 2kat_A Uncharacterized protein 98.0 0.00011 3.9E-09 49.1 10.5 81 220-302 2-82 (115)
202 2l6j_A TPR repeat-containing p 97.9 0.0001 3.5E-09 48.7 9.7 59 171-230 7-65 (111)
203 1zu2_A Mitochondrial import re 97.9 2.2E-05 7.5E-10 55.2 6.0 96 5-105 15-131 (158)
204 1na3_A Designed protein CTPR2; 97.9 0.00034 1.2E-08 44.2 10.7 21 208-228 48-68 (91)
205 1na3_A Designed protein CTPR2; 97.8 0.00038 1.3E-08 43.9 10.7 79 133-213 9-87 (91)
206 1zu2_A Mitochondrial import re 97.8 8.7E-05 3E-09 52.2 7.6 60 254-316 62-132 (158)
207 3ma5_A Tetratricopeptide repea 97.7 0.00034 1.2E-08 45.4 8.8 67 235-302 4-70 (100)
208 3ma5_A Tetratricopeptide repea 97.6 0.00028 9.5E-09 45.8 7.8 64 26-91 6-69 (100)
209 3qwp_A SET and MYND domain-con 97.6 0.00045 1.5E-08 58.0 10.9 102 246-347 295-410 (429)
210 3qww_A SET and MYND domain-con 97.6 0.00019 6.5E-09 60.2 8.5 99 250-348 310-422 (433)
211 3ly7_A Transcriptional activat 97.5 0.0049 1.7E-07 49.9 14.3 144 164-312 190-347 (372)
212 3ly7_A Transcriptional activat 97.4 0.0049 1.7E-07 49.9 13.0 66 95-162 274-339 (372)
213 2kc7_A BFR218_protein; tetratr 97.2 0.0015 5E-08 42.0 7.4 57 245-302 7-64 (99)
214 3qww_A SET and MYND domain-con 97.2 0.0024 8.3E-08 53.6 9.8 88 215-302 310-411 (433)
215 3mkq_A Coatomer beta'-subunit; 97.1 0.0059 2E-07 56.0 12.8 130 137-299 633-762 (814)
216 3qwp_A SET and MYND domain-con 97.1 0.0052 1.8E-07 51.6 11.3 93 210-302 294-400 (429)
217 3bee_A Putative YFRE protein; 97.1 0.0059 2E-07 38.8 8.7 68 235-303 3-73 (93)
218 1pc2_A Mitochondria fission pr 97.0 0.011 3.9E-07 41.1 10.4 82 219-302 14-100 (152)
219 3bee_A Putative YFRE protein; 97.0 0.0071 2.4E-07 38.4 8.4 67 24-92 3-72 (93)
220 3u64_A Protein TP_0956; tetrat 97.0 0.063 2.1E-06 41.8 14.9 92 149-242 179-281 (301)
221 1wy6_A Hypothetical protein ST 96.9 0.046 1.6E-06 36.8 13.6 150 28-200 6-157 (172)
222 2kc7_A BFR218_protein; tetratr 96.9 0.019 6.4E-07 36.6 10.1 54 143-197 10-64 (99)
223 1pc2_A Mitochondria fission pr 96.8 0.012 4.3E-07 40.8 9.0 86 254-341 14-104 (152)
224 3mkq_A Coatomer beta'-subunit; 96.8 0.038 1.3E-06 50.7 15.0 102 141-266 607-709 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.6 0.038 1.3E-06 35.8 10.1 61 136-196 8-74 (104)
226 4h7y_A Dual specificity protei 96.6 0.055 1.9E-06 37.2 10.5 64 251-316 73-136 (161)
227 3mkq_B Coatomer subunit alpha; 96.5 0.12 4.2E-06 36.9 13.6 99 178-297 15-113 (177)
228 3mkq_B Coatomer subunit alpha; 96.5 0.11 3.7E-06 37.1 12.5 46 73-124 15-60 (177)
229 2v5f_A Prolyl 4-hydroxylase su 96.4 0.025 8.5E-07 36.7 8.4 71 236-308 3-79 (104)
230 4h7y_A Dual specificity protei 96.4 0.12 3.9E-06 35.7 11.5 54 217-271 74-127 (161)
231 1nzn_A CGI-135 protein, fissio 96.4 0.047 1.6E-06 36.5 9.4 85 217-302 15-103 (126)
232 3u64_A Protein TP_0956; tetrat 96.3 0.11 3.9E-06 40.4 12.2 92 43-137 179-281 (301)
233 1wy6_A Hypothetical protein ST 96.1 0.18 6E-06 34.1 17.6 141 143-305 17-157 (172)
234 4b4t_P 26S proteasome regulato 95.8 0.74 2.5E-05 38.8 18.8 255 6-262 30-319 (445)
235 1nzn_A CGI-135 protein, fissio 95.6 0.19 6.5E-06 33.6 9.3 82 79-162 17-103 (126)
236 3lvg_A Clathrin heavy chain 1; 95.1 3.8E-05 1.3E-09 63.6 -11.5 245 26-293 53-324 (624)
237 4ady_A RPN2, 26S proteasome re 95.0 2.3 7.7E-05 39.4 21.7 259 36-301 383-657 (963)
238 3lvg_A Clathrin heavy chain 1; 94.9 4.5E-05 1.5E-09 63.2 -11.4 248 63-338 54-321 (624)
239 4ady_A RPN2, 26S proteasome re 94.4 3.1 0.00011 38.5 24.8 295 31-334 343-655 (963)
240 2ff4_A Probable regulatory pro 94.3 0.24 8.2E-06 40.9 9.0 73 241-314 174-251 (388)
241 4fhn_B Nucleoporin NUP120; pro 94.2 3.5 0.00012 39.6 17.7 52 32-89 817-868 (1139)
242 4gns_B Protein CSD3, chitin bi 94.1 0.62 2.1E-05 42.0 11.5 54 210-264 344-397 (754)
243 2ff4_A Probable regulatory pro 94.1 0.25 8.5E-06 40.9 8.6 72 65-137 173-249 (388)
244 4gns_B Protein CSD3, chitin bi 94.0 0.85 2.9E-05 41.1 12.2 127 102-229 252-397 (754)
245 4fhn_B Nucleoporin NUP120; pro 93.8 4.9 0.00017 38.6 19.8 194 139-339 818-1052(1139)
246 3o48_A Mitochondria fission 1 93.8 0.97 3.3E-05 30.4 9.9 69 234-302 36-107 (134)
247 1v54_E Cytochrome C oxidase po 93.6 0.84 2.9E-05 28.9 9.6 47 256-302 28-74 (109)
248 2y69_E Cytochrome C oxidase su 92.3 1.7 6E-05 29.2 9.6 47 256-302 71-117 (152)
249 3ffl_A Anaphase-promoting comp 92.1 1.3 4.5E-05 31.1 8.4 64 28-91 21-91 (167)
250 4b4t_P 26S proteasome regulato 91.7 5.3 0.00018 33.6 22.4 259 41-299 30-321 (445)
251 3o48_A Mitochondria fission 1 91.1 1.7 5.9E-05 29.2 7.8 72 269-340 36-110 (134)
252 1v54_E Cytochrome C oxidase po 91.1 1.9 6.5E-05 27.3 10.0 46 151-196 28-73 (109)
253 1qsa_A Protein (soluble lytic 91.1 7.8 0.00027 34.2 24.4 79 65-149 74-152 (618)
254 1y8m_A FIS1; mitochondria, unk 90.0 3.3 0.00011 28.2 10.1 73 233-307 34-109 (144)
255 4b4t_R RPN7, 26S proteasome re 88.8 5.5 0.00019 33.4 11.1 96 170-265 133-235 (429)
256 1y8m_A FIS1; mitochondria, unk 88.7 4.3 0.00015 27.7 12.3 69 200-268 36-107 (144)
257 2y69_E Cytochrome C oxidase su 88.6 4.1 0.00014 27.4 10.0 58 152-210 72-129 (152)
258 4b4t_R RPN7, 26S proteasome re 88.4 8.6 0.0003 32.2 12.0 59 66-124 134-194 (429)
259 1zbp_A Hypothetical protein VP 86.1 2.3 7.8E-05 32.7 6.5 54 37-92 7-60 (273)
260 1wdy_A 2-5A-dependent ribonucl 85.3 5.1 0.00017 30.8 8.7 19 33-51 8-26 (285)
261 2wpv_A GET4, UPF0363 protein Y 84.7 13 0.00046 29.4 16.0 22 317-338 197-218 (312)
262 3ffl_A Anaphase-promoting comp 84.5 8.6 0.00029 27.1 9.0 55 175-229 27-89 (167)
263 2uwj_G Type III export protein 84.5 5.7 0.0002 25.1 8.0 86 42-137 21-106 (115)
264 3esl_A Checkpoint serine/threo 84.2 10 0.00035 27.7 9.3 73 60-132 74-149 (202)
265 2uwj_G Type III export protein 84.1 6 0.00021 25.0 7.5 78 78-163 21-98 (115)
266 2p58_C Putative type III secre 84.0 6.1 0.00021 25.0 8.9 87 41-137 21-107 (116)
267 2p58_C Putative type III secre 83.4 6.6 0.00022 24.9 8.5 79 77-163 21-99 (116)
268 1wdy_A 2-5A-dependent ribonucl 78.6 10 0.00035 29.0 8.2 207 67-296 6-239 (285)
269 3eiq_C Programmed cell death p 77.5 27 0.00093 28.3 16.3 24 31-54 58-81 (358)
270 3bu8_A Telomeric repeat-bindin 75.2 19 0.00065 26.5 7.7 20 36-55 123-142 (235)
271 1qsa_A Protein (soluble lytic 75.1 44 0.0015 29.6 23.9 249 33-301 78-347 (618)
272 3txn_A 26S proteasome regulato 73.5 37 0.0013 28.0 23.2 233 28-265 20-282 (394)
273 4a1g_A Mitotic checkpoint seri 72.6 21 0.00072 24.7 8.6 50 117-166 84-134 (152)
274 3esl_A Checkpoint serine/threo 71.7 27 0.00092 25.5 10.3 56 146-201 92-148 (202)
275 3lpz_A GET4 (YOR164C homolog); 69.2 43 0.0015 26.9 22.0 190 6-230 10-214 (336)
276 3eiq_C Programmed cell death p 69.1 45 0.0015 27.1 15.0 25 66-90 57-81 (358)
277 3jxi_A Vanilloid receptor-rela 68.8 4.5 0.00015 30.8 3.7 54 70-123 9-71 (260)
278 3lpz_A GET4 (YOR164C homolog); 68.1 45 0.0015 26.7 21.3 192 112-337 10-216 (336)
279 3txn_A 26S proteasome regulato 67.2 52 0.0018 27.1 23.6 230 64-299 20-281 (394)
280 2wvi_A Mitotic checkpoint seri 65.5 32 0.0011 24.1 8.7 70 60-132 60-130 (164)
281 3kea_A K1L; tropism, ANK repea 65.5 45 0.0015 25.7 9.4 202 34-263 35-243 (285)
282 2zu6_B Programmed cell death p 63.4 54 0.0018 25.9 13.4 59 30-91 6-66 (307)
283 3kea_A K1L; tropism, ANK repea 61.8 53 0.0018 25.3 8.8 184 69-274 34-224 (285)
284 3hra_A Ankyrin repeat family p 61.6 31 0.0011 24.6 7.0 15 37-51 12-26 (201)
285 2wpv_A GET4, UPF0363 protein Y 60.9 60 0.0021 25.7 19.5 24 157-180 81-104 (312)
286 2xig_A Ferric uptake regulatio 58.8 41 0.0014 23.1 7.4 58 229-287 18-75 (150)
287 4a1g_A Mitotic checkpoint seri 58.3 43 0.0015 23.2 9.0 84 44-133 52-136 (152)
288 2r9g_A AAA ATPase, central reg 58.2 51 0.0017 24.0 9.9 92 69-161 17-116 (204)
289 2ion_A PDCD4, programmed cell 58.2 43 0.0015 23.1 9.3 64 171-235 12-77 (152)
290 2fe3_A Peroxide operon regulat 58.1 41 0.0014 22.9 7.2 43 211-253 29-71 (145)
291 1zbp_A Hypothetical protein VP 57.2 65 0.0022 24.9 14.7 116 71-197 5-129 (273)
292 1ug3_A EIF4GI, eukaryotic prot 56.9 63 0.0022 25.9 8.4 25 136-160 14-38 (339)
293 2fe3_A Peroxide operon regulat 56.9 43 0.0015 22.8 7.2 58 229-287 13-70 (145)
294 2xig_A Ferric uptake regulatio 56.6 45 0.0015 22.9 7.6 61 193-254 17-77 (150)
295 2d2s_A Exocyst complex compone 56.5 61 0.0021 24.4 9.0 29 166-194 89-117 (235)
296 1mzb_A Ferric uptake regulatio 55.8 43 0.0015 22.5 6.7 59 194-253 9-68 (136)
297 2d2s_A Exocyst complex compone 55.8 63 0.0022 24.3 8.9 90 174-266 24-119 (235)
298 2b7e_A PRE-mRNA processing pro 55.7 15 0.00052 20.5 3.2 29 9-37 3-31 (59)
299 1oai_A Nuclear RNA export fact 55.6 7.7 0.00026 21.8 2.0 24 40-63 33-56 (59)
300 2ion_A PDCD4, programmed cell 55.6 48 0.0016 22.9 7.6 65 205-270 11-77 (152)
301 3eyy_A Putative iron uptake re 55.1 34 0.0012 23.3 5.8 59 228-288 9-67 (145)
302 3bge_A Predicted ATPase; struc 54.8 59 0.002 23.6 9.0 93 69-161 10-110 (201)
303 2nsz_A Programmed cell death p 54.6 45 0.0015 22.2 8.1 64 206-270 10-75 (129)
304 1mzb_A Ferric uptake regulatio 54.3 42 0.0014 22.5 6.1 62 228-290 8-70 (136)
305 2w57_A Ferric uptake regulatio 53.9 51 0.0017 22.6 6.6 60 194-254 8-68 (150)
306 3jxi_A Vanilloid receptor-rela 53.8 13 0.00045 28.1 3.9 50 4-53 14-72 (260)
307 3eu9_A Huntingtin-interacting 53.7 41 0.0014 24.7 6.7 18 247-264 216-233 (240)
308 2w57_A Ferric uptake regulatio 53.7 47 0.0016 22.8 6.3 61 228-289 7-68 (150)
309 3eyy_A Putative iron uptake re 53.2 43 0.0015 22.8 6.0 60 193-254 9-68 (145)
310 1k1a_A B-cell lymphoma 3-encod 53.1 44 0.0015 24.6 6.8 25 71-95 14-38 (241)
311 2nsz_A Programmed cell death p 52.7 48 0.0017 22.1 10.7 65 171-236 10-76 (129)
312 2fu4_A Ferric uptake regulatio 52.1 35 0.0012 20.3 6.5 60 264-324 8-68 (83)
313 1n11_A Ankyrin; clathrin, BAND 51.9 77 0.0026 26.2 8.7 104 13-123 28-135 (437)
314 3eu9_A Huntingtin-interacting 51.7 47 0.0016 24.4 6.7 8 74-81 17-24 (240)
315 4ets_A Ferric uptake regulatio 51.5 55 0.0019 22.9 6.4 59 195-254 25-85 (162)
316 2o03_A Probable zinc uptake re 51.5 27 0.00094 23.3 4.7 45 244-288 16-60 (131)
317 3mwm_A ZUR, putative metal upt 51.3 25 0.00085 23.8 4.5 46 243-288 18-63 (139)
318 1k1a_A B-cell lymphoma 3-encod 51.2 56 0.0019 24.0 7.1 146 35-191 14-170 (241)
319 4ets_A Ferric uptake regulatio 49.7 48 0.0016 23.2 5.9 20 143-162 42-61 (162)
320 3pvs_A Replication-associated 48.9 1.2E+02 0.0041 25.5 14.9 55 180-234 267-326 (447)
321 2zu6_B Programmed cell death p 48.6 99 0.0034 24.4 12.0 25 66-90 6-30 (307)
322 3t8k_A Uncharacterized protein 48.1 71 0.0024 22.7 7.9 29 69-97 41-69 (186)
323 3ctd_A Putative ATPase, AAA fa 47.3 82 0.0028 23.2 9.3 92 69-161 38-137 (213)
324 3ygs_P Procaspase 9; apoptosis 46.9 32 0.0011 21.5 4.2 65 13-84 25-89 (97)
325 2o03_A Probable zinc uptake re 46.7 45 0.0015 22.2 5.2 47 208-254 15-61 (131)
326 3bqo_A Telomeric repeat-bindin 46.7 82 0.0028 22.9 8.3 24 279-302 123-146 (211)
327 4aez_C MAD3, mitotic spindle c 45.8 91 0.0031 23.2 8.6 52 255-306 131-183 (223)
328 1wty_A Hypothetical protein TT 45.5 48 0.0016 21.7 5.1 68 7-80 3-70 (119)
329 3mwm_A ZUR, putative metal upt 45.0 42 0.0014 22.7 4.9 49 207-255 17-65 (139)
330 2wvi_A Mitotic checkpoint seri 43.7 82 0.0028 22.1 9.6 50 152-201 79-129 (164)
331 1ug3_A EIF4GI, eukaryotic prot 41.1 1.4E+02 0.0047 24.0 11.0 25 30-54 14-38 (339)
332 3ljn_A Hypothetical protein; a 40.0 93 0.0032 24.8 7.2 96 61-165 16-113 (364)
333 2pnn_A Transient receptor pote 39.8 57 0.002 24.8 5.6 20 73-92 20-39 (273)
334 3ltm_A Alpha-REP4; protein eng 39.7 1E+02 0.0035 22.1 18.9 61 166-231 124-184 (211)
335 1bd8_A P19INK4D CDK4/6 inhibit 39.3 68 0.0023 21.5 5.5 17 72-88 8-24 (156)
336 4b4t_S RPN3, 26S proteasome re 39.0 1.9E+02 0.0065 24.9 11.6 123 63-193 231-366 (523)
337 2rfa_A Transient receptor pote 38.7 1.1E+02 0.0038 22.2 8.4 55 175-230 158-221 (232)
338 3qil_A Clathrin heavy chain 1; 36.5 68 0.0023 21.2 4.4 72 1-85 15-86 (125)
339 2fu4_A Ferric uptake regulatio 34.9 71 0.0024 18.8 7.2 32 254-285 33-64 (83)
340 1bpo_A Protein (clathrin); cla 34.4 2.2E+02 0.0074 24.2 9.6 90 63-154 361-450 (494)
341 3pvs_A Replication-associated 33.9 2.1E+02 0.0072 24.0 15.9 89 250-338 267-360 (447)
342 4g8k_A 2-5A-dependent ribonucl 33.7 1.7E+02 0.0059 22.9 11.2 57 32-97 27-86 (337)
343 2ijq_A Hypothetical protein; s 33.4 1.2E+02 0.0042 21.2 8.0 52 250-301 44-103 (161)
344 4gq2_M Nucleoporin NUP120; bet 33.4 3.1E+02 0.011 25.8 11.8 25 311-335 900-924 (950)
345 2etb_A Transient receptor pote 33.3 44 0.0015 25.0 4.0 24 315-338 225-248 (256)
346 3bqo_A Telomeric repeat-bindin 33.3 43 0.0015 24.3 3.4 24 69-92 123-146 (211)
347 4g8k_A 2-5A-dependent ribonucl 32.9 1.8E+02 0.0061 22.8 8.2 48 179-237 281-328 (337)
348 4fke_A Aminopeptidase N; zinc 29.9 3.5E+02 0.012 25.4 18.8 24 102-125 762-785 (909)
349 3ltj_A Alpharep-4; protein eng 29.7 1.5E+02 0.0051 21.0 18.4 154 131-301 26-179 (201)
350 2f6m_A Suppressor protein STP2 29.7 83 0.0028 18.0 4.5 47 275-322 4-50 (65)
351 3qye_A TBC1 domain family memb 29.6 2.1E+02 0.0072 22.7 10.3 114 224-340 209-326 (331)
352 4fke_A Aminopeptidase N; zinc 29.6 3.6E+02 0.012 25.3 17.7 91 172-267 690-787 (909)
353 3hzj_A Rabgap1L, RAB GTPase-ac 29.4 2E+02 0.007 22.5 10.3 42 227-268 178-219 (310)
354 3b7b_A Euchromatic histone-lys 29.4 69 0.0024 23.5 4.5 21 246-266 215-235 (237)
355 3bu8_A Telomeric repeat-bindin 29.2 1.8E+02 0.006 21.6 12.4 22 210-231 121-142 (235)
356 2ijq_A Hypothetical protein; s 28.0 1.6E+02 0.0053 20.6 8.8 58 206-264 36-101 (161)
357 2etb_A Transient receptor pote 28.0 1E+02 0.0036 22.9 5.3 29 69-97 5-33 (256)
358 2rg8_A Programmed cell death p 27.6 95 0.0033 21.8 4.5 24 172-195 14-37 (165)
359 2rfa_A Transient receptor pote 27.6 1.8E+02 0.006 21.1 8.6 20 214-233 162-181 (232)
360 2qx5_A Nucleoporin NIC96; mRNA 25.5 3.7E+02 0.013 24.1 16.0 26 29-55 155-180 (661)
361 2cos_A Serine/threonine protei 25.4 77 0.0026 17.3 2.7 40 10-54 8-49 (54)
362 1n11_A Ankyrin; clathrin, BAND 25.1 2.6E+02 0.0088 22.9 7.6 72 13-87 61-134 (437)
363 3qil_A Clathrin heavy chain 1; 24.6 78 0.0027 20.9 3.2 51 241-294 35-85 (125)
364 3ltm_A Alpha-REP4; protein eng 24.5 1.9E+02 0.0066 20.6 19.0 107 202-320 94-200 (211)
365 3t8k_A Uncharacterized protein 24.3 1.9E+02 0.0065 20.4 9.4 29 104-132 41-69 (186)
366 2qfz_A TBC1 domain family memb 24.3 2.7E+02 0.0093 22.2 7.3 76 119-194 230-312 (345)
367 3t5v_B Nuclear mRNA export pro 24.2 2.7E+02 0.0093 23.5 7.3 30 205-234 178-207 (455)
368 2rg8_A Programmed cell death p 23.9 1.4E+02 0.0047 21.0 4.7 21 104-124 16-36 (165)
369 3aji_A 26S proteasome non-ATPa 22.8 2.2E+02 0.0074 20.5 8.2 19 70-88 10-28 (231)
370 2crb_A Nuclear receptor bindin 22.8 1.4E+02 0.005 18.5 4.1 28 273-300 15-42 (97)
371 3aji_A 26S proteasome non-ATPa 22.7 2.2E+02 0.0075 20.5 8.5 58 34-97 10-67 (231)
372 3ljn_A Hypothetical protein; a 21.5 3.1E+02 0.01 21.7 7.7 95 26-128 17-111 (364)
373 1wgl_A TOLL-interacting protei 21.4 1.2E+02 0.004 16.9 4.5 18 39-56 35-52 (59)
374 2yru_A Steroid receptor RNA ac 21.2 1.8E+02 0.0062 19.0 5.4 42 85-126 48-89 (118)
375 2ko4_A Mediator of RNA polymer 21.1 1.4E+02 0.0049 17.8 3.7 33 22-54 31-63 (81)
376 2p22_A Suppressor protein STP2 21.1 1.4E+02 0.0049 21.1 4.3 52 271-323 109-160 (174)
377 1bpo_A Protein (clathrin); cla 20.8 3.9E+02 0.013 22.7 10.3 109 147-260 343-451 (494)
378 3t5v_B Nuclear mRNA export pro 20.5 2.3E+02 0.0077 24.0 6.1 63 135-197 178-249 (455)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.7e-35 Score=250.28 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=117.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCCCchhhH
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH---------FEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .+.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 45566666666666666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 286 (349)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 287 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666543
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-34 Score=247.36 Aligned_cols=202 Identities=13% Similarity=0.156 Sum_probs=111.9
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC---------hhHH
Q 018882 13 ELFQAMVDEGCDANT-QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA---------FDKV 82 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a 82 (349)
.+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+. |+.||..+|+++|.+|++.+. ++.|
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 333444444443333 23555566666666666666666666654 456666666666666655433 3455
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
.++|++|...|+.||..||+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55666666666666666666666666666666666666666655555566666666666666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
|+.||..+|++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666555555566666555555544
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-32 Score=244.25 Aligned_cols=236 Identities=10% Similarity=-0.041 Sum_probs=105.3
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (349)
+..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 33444444444455555555555555444332 1122223333333333333333333333332221 223444445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018882 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
.|.+.|++++|.++|+++.+.... +..+|+.++.++.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 555555555555555554443211 34455555555555555555555555544432 2344444445555555555555
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCchhhhHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD--KVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
|.++|+.+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++
T Consensus 460 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555554444322 23444445555555555555555555544443 33344 34445555555555555555554
Q ss_pred HHHHHHH
Q 018882 331 QDLVEKM 337 (349)
Q Consensus 331 ~~~~~~~ 337 (349)
++.+.+.
T Consensus 539 ~~~~~~~ 545 (597)
T 2xpi_A 539 LNQGLLL 545 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-33 Score=245.28 Aligned_cols=329 Identities=10% Similarity=0.019 Sum_probs=291.3
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHH--------------------------------------HHHHHcCCCh
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTAL--------------------------------------LSAYGRSGLF 43 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~ 43 (349)
|.+.|++++|+++|+++.+.+ +.+...+..+ +..|.+.|++
T Consensus 210 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 210 YTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 567899999999999999875 2334444433 4456678899
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHH
Q 018882 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 123 (349)
++|.++|+++.+. +++..+++.++.++.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..++++
T Consensus 289 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 289 RRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999865 5899999999999999999999999999999875 34788999999999999999999999999
Q ss_pred HhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 018882 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI 203 (349)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 203 (349)
+.+.. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+.
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 441 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTH 441 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCS
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cch
Confidence 98654 5678899999999999999999999999998864 44788999999999999999999999999988754 488
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch--HHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD--TVFFN 277 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~ 277 (349)
.+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|..++..+.+.|++++|..+++.+.+. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 999999999999999999999999998765 557899999999999999999999999998765 55677 78999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.++.+.++.+.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999875 347899999999999999999999999999888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=2.6e-28 Score=205.02 Aligned_cols=325 Identities=10% Similarity=0.038 Sum_probs=214.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++++|...++...+.. +.+..+|..+..++.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|.+
T Consensus 46 ~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 344455555554444432 3344555555555555555555555555555432 2334445555555555555555555
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI 164 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (349)
.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+..
T Consensus 123 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 199 (388)
T 1w3b_A 123 AYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD- 199 (388)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 555555542 1233344455555556666666666666665543 2334556666666666666666666666666653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
+.+...+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 277 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNL 277 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 234556666666666677777777777666655432 56778888888888888888888888887764 3456778888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 324 (349)
...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 888888888888888888887764 3477788888888888999999999888888753 33577888888889999999
Q ss_pred hhhHHHHHHHHHHhh
Q 018882 325 NHAKEFQDLVEKMDE 339 (349)
Q Consensus 325 ~~a~~~~~~~~~~~~ 339 (349)
++|.+.++.+.+..+
T Consensus 356 ~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 356 QEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhhCC
Confidence 999988888776544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=9.6e-28 Score=201.54 Aligned_cols=326 Identities=11% Similarity=-0.025 Sum_probs=286.2
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHH
Confidence 35799999999999998874 4566778888888999999999999999988763 67889999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
...|+++.+.. +.+..+|..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999998873 3356689999999999999999999999998764 334566778888899999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH
Q 018882 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (349)
. +.+..+|..+...+...|++++|...|+++.+.++. +...|..+...+...|++++|...+++..... +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 4 446788999999999999999999999999987644 67889999999999999999999999988764 44678899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
.+...+...|++++|...++.+.+..+ .+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 999999999999999999999998754 367789999999999999999999999999874 457889999999999999
Q ss_pred chhhhHHHHHHHHHHh
Q 018882 323 MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 323 ~~~~a~~~~~~~~~~~ 338 (349)
++++|.+.++.+.+..
T Consensus 320 ~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF 335 (388)
T ss_dssp CHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999998876654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=3.6e-25 Score=189.49 Aligned_cols=322 Identities=10% Similarity=-0.017 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018882 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 88 (349)
..+...+..+.... +.+...+..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455555555542 4567889999999999999999999999988753 56788899999999999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcch---hhHHHH------------HHHHHccCCHHHHH
Q 018882 89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV---WTMNCT------------LRAFGNSGQIDTME 153 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~ 153 (349)
+.+.+ +.+..++..+..+|...|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|.
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98875 3467888899999999999999999999998764 2333 455544 44488899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..++++.+.. +.+..++..+..++...|++++|...|+++.+... .+..++..+...+...|++++|...++.+....
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998874 45788899999999999999999999999887653 378899999999999999999999999988653
Q ss_pred CCCcHHHHHHH------------HHHHHhcCChhhHHHHHHHHhhCCCC-ch--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 234 IKPSCVTLCSL------------VRAYGHAGKPEKLGSVLRFIDNSDIM-LD--TVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 234 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
+.+...+..+ ...+...|++++|...++.+.+.... +. ...+..+...+.+.|++++|...+++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444444 78889999999999999998875432 11 45788889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 299 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.... +.+...|..+..+|...|++++|.+.++.+.++.+
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 88763 23678899999999999999999999998877654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.3e-24 Score=184.45 Aligned_cols=302 Identities=13% Similarity=0.032 Sum_probs=256.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
|.+.|++++|+..|+.+.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..++.+.|++++
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHH
Confidence 456899999999999999873 5678899999999999999999999999998864 5678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCch---HHHHHH------------HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018882 82 VQALLSDMSTQGIRPNT---VTYNTL------------IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
|...|+++.+.. +.+. ..+..+ ...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 113 A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 113 AEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence 999999999864 2234 555555 444888999999999999998765 55778899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH------------HHHHH
Q 018882 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV------------IDAFG 214 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~ 214 (349)
|++++|.++++++.+.. +.+..++..+...+...|++++|...|+++...... +...+..+ ...+.
T Consensus 191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELI 268 (450)
T ss_dssp TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 457889999999999999999999999999876533 44555544 78899
Q ss_pred hcCChHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 018882 215 RAGDLKQMEYLFRLMRSERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
..|++++|...++.+.+.. |+ ...+..+...+.+.|++++|...++.+.+... .+..+|..+..+|...|++
T Consensus 269 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 269 RDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCH
Confidence 9999999999999998753 33 34788889999999999999999999887643 4688999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 018882 290 AEMKGVLEVMQQRGCKP-DKVTYRTMV 315 (349)
Q Consensus 290 ~~a~~~~~~m~~~~~~p-~~~~~~~l~ 315 (349)
++|...++++.+. .| +...+..+.
T Consensus 346 ~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 346 DEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 9999999999986 34 455565555
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5e-24 Score=185.46 Aligned_cols=329 Identities=9% Similarity=-0.071 Sum_probs=272.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|++.|+++.+.. +.+..++..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHH
Confidence 356899999999999999975 789999999999999999999999999998864 5677899999999999999999
Q ss_pred HHHHHHHHHhcCCCC-----------------------------------------------------------------
Q 018882 82 VQALLSDMSTQGIRP----------------------------------------------------------------- 96 (349)
Q Consensus 82 a~~~~~~~~~~~~~~----------------------------------------------------------------- 96 (349)
|...|+++...+...
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999999987764210
Q ss_pred -------------chHHHHHHHHHHhc---cCcHHHHHHHHHHHhc-----cCC--------CcchhhHHHHHHHHHccC
Q 018882 97 -------------NTVTYNTLIDAYGR---AKMFAEMELTLVKMLS-----EDC--------EPDVWTMNCTLRAFGNSG 147 (349)
Q Consensus 97 -------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~ 147 (349)
+...+..+...+.. .|++++|...++++.+ ... +.+...+..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 12233333333343 8999999999999887 311 234567888889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
++++|...++++.+.... ...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999887533 888899999999999999999999999887543 67889999999999999999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 018882 228 LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK-P 306 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p 306 (349)
.+.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++...... +
T Consensus 329 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 329 KAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 998765 44667888899999999999999999999887643 36778889999999999999999999998775321 1
Q ss_pred C----HHHHHHHHHHHHh---cCchhhhHHHHHHHHHHhh
Q 018882 307 D----KVTYRTMVRAYST---NGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 307 ~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 339 (349)
+ ...+..+..++.. .|++++|.+.++.+.+..+
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 1 3388889999999 9999999999998877654
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=6.4e-22 Score=164.01 Aligned_cols=291 Identities=12% Similarity=0.011 Sum_probs=141.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
+.|++++|+..|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++++|.
T Consensus 15 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 91 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAE 91 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHH
Confidence 3455555555555555542 3344555555555555555555555555555432 234455555555555555555555
Q ss_pred HHHHHHHhcCCC--CchHHHHHH------------HHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCH
Q 018882 84 ALLSDMSTQGIR--PNTVTYNTL------------IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQI 149 (349)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (349)
..++++.+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence 555555544210 123333333 344455555555555555555443 23344455555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHH------------HHHHHHhcC
Q 018882 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI------------VIDAFGRAG 217 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~ 217 (349)
++|...++++.+.. +.+..++..+...+...|++++|...++...+.... +...+.. +...+...|
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555555442 234445555555555555555555555555443321 2222221 133344555
Q ss_pred ChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 018882 218 DLKQMEYLFRLMRSERIKPSC----VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
++++|...++.+.+... .+. ..+..+...+...|++++|...++.+.+... .+..++..+...|...|++++|.
T Consensus 249 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp CHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555544321 111 1123344455555555555555555544321 24445555555555555555555
Q ss_pred HHHHHHHhc
Q 018882 294 GVLEVMQQR 302 (349)
Q Consensus 294 ~~~~~m~~~ 302 (349)
..|++..+.
T Consensus 327 ~~~~~a~~~ 335 (359)
T 3ieg_A 327 QDYEAAQEH 335 (359)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 555555544
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.7e-23 Score=179.94 Aligned_cols=330 Identities=9% Similarity=-0.031 Sum_probs=274.8
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-------------------
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD------------------- 62 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------- 62 (349)
+.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|+++....+ ++
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 49 YVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD--FNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--CCGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHHHHH
Confidence 346799999999999999875 55678999999999999999999999999876532 11
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHh---cCCh
Q 018882 63 ------------------------------------------------------------VNTYSILIKSCLK---AFAF 79 (349)
Q Consensus 63 ------------------------------------------------------------~~~~~~ll~~~~~---~~~~ 79 (349)
...+......+.. .|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 2233333333443 7999
Q ss_pred hHHHHHHHHHHh-----cCC--------CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018882 80 DKVQALLSDMST-----QGI--------RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 80 ~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
++|...++++.+ ... +.+..++..+..++...|++++|...++++.+.... ...+..+...+...
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHC
Confidence 999999999987 311 224567888899999999999999999999887533 88889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 018882 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...+
T Consensus 284 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998874 446778999999999999999999999999887644 6788999999999999999999999
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-ch----HHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 018882 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LD----TVFFNCLVDAYGR---LKCFAEMKGVLEV 298 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~ 298 (349)
+.+.+.. +.+...+..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .|++++|...++.
T Consensus 362 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 362 SEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 9998754 445678899999999999999999999988764321 11 3488899999999 9999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 299 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+.... +.+..++..+..+|.+.|++++|.+.++...++.+.
T Consensus 441 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 441 ASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 98874 236788899999999999999999999998887654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=7e-22 Score=163.78 Aligned_cols=307 Identities=9% Similarity=-0.024 Sum_probs=258.8
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 45678889999999999999999999998764 5678899999999999999999999999999874 33678899999
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCC--cchhhHHHH------------HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCE--PDVWTMNCT------------LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF 171 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (349)
.++...|++++|...++++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999999876420 244444444 578899999999999999998875 4578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH---------
Q 018882 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC--------- 242 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 242 (349)
..+...+...|++++|...++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 9999999999999999999999988754 378899999999999999999999999998754 23333332
Q ss_pred ---HHHHHHHhcCChhhHHHHHHHHhhCCCCchH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 243 ---SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT----VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 243 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 315 (349)
.+...+...|++++|...++.+.+.... +. ..+..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 2366789999999999999998876533 22 345568899999999999999999999873 33788999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 316 RAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.++...|++++|.+.++...++.+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999887654
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.4e-22 Score=175.85 Aligned_cols=330 Identities=9% Similarity=-0.004 Sum_probs=249.8
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.+.|++++|++.|+++.+.. +.++.+|..+..++.+.|++++|++.|+++.+.. +.+..++..+..++...|++++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHH
Confidence 346789999999999998874 5678889999999999999999999999988764 5677888888999999999888
Q ss_pred HHHHHHHHHhc---------------------------------------------------------------------
Q 018882 82 VQALLSDMSTQ--------------------------------------------------------------------- 92 (349)
Q Consensus 82 a~~~~~~~~~~--------------------------------------------------------------------- 92 (349)
|...|+.+...
T Consensus 112 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (537)
T 3fp2_A 112 AMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191 (537)
T ss_dssp HHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccccc
Confidence 88777432100
Q ss_pred --------------------------------------CCCCc--------hHHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 018882 93 --------------------------------------GIRPN--------TVTYNTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 93 --------------------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
...|+ ..++..+...+...|++++|...++++.+
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 01111 12344455566677788888888888876
Q ss_pred cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 018882 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+
T Consensus 272 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 347 (537)
T 3fp2_A 272 LH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPY 347 (537)
T ss_dssp HC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHH
T ss_pred cC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 53 446777778888888888888888888887764 346777888888888888888888888888776533 56778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCchHHHHHHHHH
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-----IMLDTVFFNCLVD 281 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~ 281 (349)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. .......+.....
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 888888888888999988888887654 4456678888888888899998888888876532 1112233445556
Q ss_pred HHHhc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 282 AYGRL----------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 282 ~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+... |++++|...|++..+... .+...+..+..+|.+.|++++|.+.++...++.++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 67777 899999999998887642 36788899999999999999999999998887654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=6.8e-22 Score=161.98 Aligned_cols=295 Identities=9% Similarity=-0.054 Sum_probs=248.5
Q ss_pred CCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHH
Q 018882 23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN 102 (349)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (349)
.+.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 35677888899999999999999999999998764 4566677778889999999999999999999874 44778899
Q ss_pred HHHHHHhccC-cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018882 103 TLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 103 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
.+...+...| ++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998765 4456788999999999999999999999999875 33566777899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHhcCC
Q 018882 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER--------IKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 253 (349)
|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. .+....++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887643 68889999999999999999999999887531 13345788999999999999
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCchh
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-STNGMKN 325 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~ 325 (349)
+++|...++.+.+... .+...+..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999999987654 367889999999999999999999999988764 22677788888777 4555543
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=9e-22 Score=163.89 Aligned_cols=296 Identities=10% Similarity=-0.067 Sum_probs=232.3
Q ss_pred HHcCCChhHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Q 018882 37 YGRSGLFDKAFS-LLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 37 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
+...|++++|++ .|++........| +...+..+...+.+.|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578899998 8887665432222 35667888899999999999999999999874 4477888999999999999
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------HHHHH
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI---------------LLDSY 178 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 178 (349)
+++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998775 456788899999999999999999999999886422 2222221 23334
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 179 GKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
...|++++|...++++.+..+.. +..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998765332 57889999999999999999999999988764 45678899999999999999999
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHhcCchhhh
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP----------DKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a 327 (349)
...++.+.+... .+..++..+...|.+.|++++|...|+++....... ...+|..+..+|...|+++.|
T Consensus 271 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 999999887653 467889999999999999999999999988753211 268899999999999999999
Q ss_pred HHHHHHHHHH
Q 018882 328 KEFQDLVEKM 337 (349)
Q Consensus 328 ~~~~~~~~~~ 337 (349)
..+++...+.
T Consensus 350 ~~~~~~~l~~ 359 (368)
T 1fch_A 350 GAADARDLST 359 (368)
T ss_dssp HHHHTTCHHH
T ss_pred HHhHHHHHHH
Confidence 9987754443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=8e-21 Score=155.60 Aligned_cols=280 Identities=7% Similarity=-0.083 Sum_probs=238.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~ 81 (349)
...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...| ++++
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHH
Confidence 35699999999999999874 5567788888899999999999999999998864 557788999999999999 9999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|...+++..+.. +.+...|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 110 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 110 ARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999998874 3467889999999999999999999999998775 34556777799999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--------YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|...++...+..
T Consensus 188 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 188 IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 74 4578889999999999999999999999887642 13346789999999999999999999999998765
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH-HhcCCHH
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY-GRLKCFA 290 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 290 (349)
+.+...+..+...+...|++++|...++.+.+... .+...+..+..++ ...|+.+
T Consensus 267 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 267 -PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred -ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 45678899999999999999999999999988653 3677888888877 4556543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3.6e-21 Score=160.23 Aligned_cols=288 Identities=8% Similarity=-0.068 Sum_probs=230.8
Q ss_pred CCChHHHHH-HHHHHHHcCC-CC--ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018882 5 CKQPEKAHE-LFQAMVDEGC-DA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 5 ~g~~~~A~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 80 (349)
.|++++|.+ .|++..+... .| +...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHH
Confidence 466777777 6665544321 11 35678889999999999999999999999874 567889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHH---------------HHHHHHc
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC---------------TLRAFGN 145 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 145 (349)
+|...++++.+.. +.+..++..+..++...|++++|...++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 9999999999875 447889999999999999999999999999876422 2222211 2334448
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 018882 146 SGQIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
.|++++|...++++.+..... +..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998874221 5788999999999999999999999999887533 67899999999999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc----------hHHHHHHHHHHHHhcCCHHHHHH
Q 018882 225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML----------DTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.++.+.+.. +.+...+..+..++...|++++|...++.+.+..... ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998764 4567889999999999999999999999887643211 26789999999999999999998
Q ss_pred HHHH
Q 018882 295 VLEV 298 (349)
Q Consensus 295 ~~~~ 298 (349)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=2.9e-21 Score=160.70 Aligned_cols=268 Identities=9% Similarity=-0.094 Sum_probs=216.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999998874 4478889999999999999999999999998765 456788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHH
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQ---------PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVID 211 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 211 (349)
++...|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998875311 01223344578889999999999999999887533 16788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH
Q 018882 212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
.+...|++++|...++++.+.. +.+..++..+..++...|++++|...++.+.+... .+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998764 55678999999999999999999999999987653 358889999999999999999
Q ss_pred HHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 292 MKGVLEVMQQRGCK-----------PDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 292 a~~~~~~m~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
|...|+++.+.... .+...|..+..++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998875211 1367889999999999999888776554
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.3e-19 Score=158.49 Aligned_cols=307 Identities=9% Similarity=-0.010 Sum_probs=247.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
....|..+...+.+.|++++|++.|+++.... +.+...+..+..++.+.|++++|.+.++++.+.. +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 35678888999999999999999999998864 5688999999999999999999999999999875 44788899999
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCC------------------------------------cchh---------------
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCE------------------------------------PDVW--------------- 134 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~--------------- 134 (349)
.++...|++++|...|+.+...... |+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999998643211100 0000
Q ss_pred ---------------hHHHHHHHHHc--------cCCHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCH
Q 018882 135 ---------------TMNCTLRAFGN--------SGQIDTMEKCYEKFQSAGIQPS-------INTFNILLDSYGKAGHF 184 (349)
Q Consensus 135 ---------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~ 184 (349)
....+...+.. .|++++|..+++++.+... .+ ..++..+...+...|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccH
Confidence 11111222211 1478889999999887642 23 23466777888899999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
++|...++.+.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999998865 458889999999999999999999999998765 456788999999999999999999999999
Q ss_pred hhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 265 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+..+..
T Consensus 337 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 337 QSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 87654 356789999999999999999999999999874 3357788999999999999999999999998887643
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=2.7e-20 Score=154.82 Aligned_cols=267 Identities=7% Similarity=-0.065 Sum_probs=220.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+.+.|++++|++.|+++.... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44568899999999999999999999998864 5678899999999999999999999999999874 44688999999
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchh----------hHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVW----------TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNIL 174 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 174 (349)
.+|...|++++|...++++.+.. +.+.. .+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999998753 11222 2334578899999999999999999987522 168899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
...+...|++++|...++++.+.... +..+|..+..++...|++++|...++++.+.. +.+..++..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887643 78899999999999999999999999998764 45578899999999999999
Q ss_pred hhHHHHHHHHhhCCCC-----------chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 255 EKLGSVLRFIDNSDIM-----------LDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
++|...++.+.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999988753211 1367899999999999999988877654
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=1e-19 Score=148.86 Aligned_cols=265 Identities=5% Similarity=-0.077 Sum_probs=161.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 45567778888889999999999999887753 4577788888888999999999999999988774 34677888888
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHH--------------HH-HHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT--------------LR-AFGNSGQIDTMEKCYEKFQSAGIQPSINT 170 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (349)
.++...|++++|.+.++++.... +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 88889999999999998888653 2222233222 11 2445555666666666655543 224555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 555555566666666666666555544322 34555555555555555555555555554432 2234445555555555
Q ss_pred cCChhhHHHHHHHHhhCCCCc-----------hHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 251 AGKPEKLGSVLRFIDNSDIML-----------DTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
.|++++|...++.+.+..... +...|..+..++.+.|++++|..+++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555555555444322111 24444445555555555555544443
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=1.2e-19 Score=148.48 Aligned_cols=274 Identities=5% Similarity=-0.079 Sum_probs=227.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
+...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456777888999999999999999998874 3477888999999999999999999999998875 456778889999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCchhhH
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL--------------LD-SYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
.+...|++++|.+.++++.+... .+...+..+ .. .+...|++++|...++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 99999999999999999988642 233333333 22 367788999999999999887643 78899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 286 (349)
..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+... .+...+..+...|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 999999999999999999999998764 45678899999999999999999999999887653 3678899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 287 KCFAEMKGVLEVMQQRGCKP-----------DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 287 g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
|++++|...++++....... +...|..+..++...|+++.|..+++...+..+..
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999998764321 47789999999999999999999887665554443
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=6.7e-21 Score=156.26 Aligned_cols=284 Identities=13% Similarity=0.110 Sum_probs=135.7
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+-+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHH
Confidence 456788999999999982 335999999999999999999999964 2567799999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99988777764 4567889999999999999999887774 367779999999999999999999999976
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 47999999999999999999999988 27899999999999999999996655542 2333445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CHHHHHH
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVMQQRGCKP------DKVTYRT 313 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~~~~~ 313 (349)
..++..|.+.|++++|..+++...... +-....|+.+...|++- ++..+.++.|. .+.+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHH
Confidence 578999999999999999999998776 45778888888888875 34444444443 1223333 4667888
Q ss_pred HHHHHHhcCchhhhHHH
Q 018882 314 MVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 314 l~~~~~~~g~~~~a~~~ 330 (349)
+.-.|.+.++++.|...
T Consensus 288 ~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhchHHHHHHH
Confidence 88889999999887763
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=2e-18 Score=138.33 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=179.2
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
+-....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678888888888776544 3332 3445567788888888888765543 23566777777888888888
Q ss_pred cHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 113 MFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877665434 445556666778888888888888776 456777888888888888888888888
Q ss_pred HHHHhcCCCCchhhH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 192 EYMQKYHYSWTIVTY---NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
+.+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887764 332211 122333445578888888888887763 5677788888888888888888888888877765
Q ss_pred CCchHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc
Q 018882 269 IMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQR 302 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 302 (349)
+ -++.++..++..+...|+.++ +.++++++.+.
T Consensus 231 p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3 367778888888888888765 56788887776
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.3e-16 Score=133.55 Aligned_cols=305 Identities=11% Similarity=-0.023 Sum_probs=172.8
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cC
Q 018882 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR----SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AF 77 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 77 (349)
+++++|.+.|++..+.| ++..+..|...|.. .+++++|++.|++.... -+...+..+...+.. .+
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCC
Confidence 44444444444444432 33334444444443 34444444444444332 123334444444443 34
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCCH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQI 149 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 149 (349)
++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 4445555554444432 33444444444444 445555555555554432 22334444444443 4555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-----CChH
Q 018882 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-----GDLK 220 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~ 220 (349)
++|..+|++..+.| +...+..+...+.. .++.++|...|++..+.+ +...+..+...+... ++++
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 66666665555543 33444455555555 566666666666665543 345555566666555 6777
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh----cCCHHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR----LKCFAEMK 293 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 293 (349)
+|...++...+.+ +...+..+...+...| ++++|...++...+.+ ++..+..+...|.. .+++++|.
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7777777766654 3345555666665545 6677777777777653 45677777777777 78888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCchhhhHHHHHHHHHHh
Q 018882 294 GVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 294 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 338 (349)
..|++..+.| +...+..+...|.. .++.++|.+.+++..+.+
T Consensus 388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888888765 56677777777877 788888888888887776
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=3.4e-18 Score=136.92 Aligned_cols=255 Identities=8% Similarity=0.062 Sum_probs=207.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCch--HHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG 147 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (349)
++-....|+++.|+...+..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999988876544 3443 4556678999999999999986654 23677888899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 018882 148 QIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
+.++|.+.++++...+..| +...+..+...+...|++++|...+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 566777788999999999999999987 357889999999999999999999999
Q ss_pred HHHHhCCCCCcHHHH---HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 227 RLMRSERIKPSCVTL---CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
+.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++.....
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998764 443211 223344445689999999999998874 4588899999999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCchhh-hHHHHHHHHHHhhh
Q 018882 304 CKPDKVTYRTMVRAYSTNGMKNH-AKEFQDLVEKMDET 340 (349)
Q Consensus 304 ~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 340 (349)
. -+..++..++..+...|+.++ +.++++.+.+..+.
T Consensus 231 p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 231 S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 3 378889999999999999876 57888888877654
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.2e-16 Score=133.61 Aligned_cols=306 Identities=13% Similarity=0.049 Sum_probs=253.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----c
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR----SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----A 76 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 76 (349)
.+++++|.+.|++..+.| ++..+..|...|.. .+++++|.+.|++.... .+...+..+...+.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 689999999999998865 67788888888888 89999999999998875 366777788888888 7
Q ss_pred CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCC
Q 018882 77 FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQ 148 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 148 (349)
+++++|..+|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999998876 56777778888876 789999999999998764 46677778888877 899
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChH
Q 018882 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLK 220 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 220 (349)
.++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...+.. .++++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999988875 56677778888876 789999999999988765 56677777777777 88999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-----CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC---CHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHA-----GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK---CFAEM 292 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a 292 (349)
+|...|+...+.+ +...+..+...+... +++++|...++...+.+ +...+..+...|...| ++++|
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence 9999999988765 445677777888777 89999999999998875 4456777888887766 78999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCchhhhHHHHHHHHHHh
Q 018882 293 KGVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 293 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 338 (349)
.+.|++..+.| +...+..+...|.. .+++++|.+.+++..+..
T Consensus 351 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 351 VEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 99999999874 67888889888988 889999999998876643
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=162.63 Aligned_cols=118 Identities=13% Similarity=0.274 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQ---KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
..+|+++|++||+.|++++|..+|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4456666666666666666666665554 2355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCh-hhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 245 VRAYGHAGKP-EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 245 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666653 4566666666666666666666666544433
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=5.1e-20 Score=163.13 Aligned_cols=135 Identities=14% Similarity=0.129 Sum_probs=119.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS---ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
-..||+++|.+|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhhhc
Q 018882 279 LVDAYGRLKCF-AEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343 (349)
Q Consensus 279 li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (349)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++.+...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p 264 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSL 264 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCC
Confidence 99999999985 78999999999999999999999998765543 455555555554443
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.6e-15 Score=132.38 Aligned_cols=329 Identities=9% Similarity=0.062 Sum_probs=180.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChhHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC-LKAFAFDKV 82 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a 82 (349)
+.|++++|..+|+++.+. .|.+...|...+..+.+.|++++|..+|+++... .|+...|...+... ...|+.+.|
T Consensus 24 ~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhH
Confidence 468899999999999886 3567788999999999999999999999999876 46766666555322 223444443
Q ss_pred HH----HHHHHHhc-CCCC-chHHHHHHHHHHhc---------cCcHHHHHHHHHHHhccC-------------------
Q 018882 83 QA----LLSDMSTQ-GIRP-NTVTYNTLIDAYGR---------AKMFAEMELTLVKMLSED------------------- 128 (349)
Q Consensus 83 ~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~------------------- 128 (349)
.+ +|+..... |..| +...|...+..... .|+++.|..+|++..+..
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 33 44443322 2222 23334333333222 344444444444433310
Q ss_pred --------------------------------------C-----------------------------------------
Q 018882 129 --------------------------------------C----------------------------------------- 129 (349)
Q Consensus 129 --------------------------------------~----------------------------------------- 129 (349)
+
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 0
Q ss_pred ---------CcchhhHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 130 ---------EPDVWTMNCTLRAFGN-------SGQID-------TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 130 ---------~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
+.+...|......+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 1111222222222222 35544 555555555542122345555566666666666666
Q ss_pred HHHHHHHHHhcCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCChhhHHHHHHHH
Q 018882 187 MSAVMEYMQKYHYSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA-YGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~ 264 (349)
|..+|+++.+.... + ...|..++..+.+.|++++|..+|++..+.. +.+...+...... +...|++++|..+|+..
T Consensus 340 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 340 VHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 66666666553211 2 2355555555556666666666666665432 1122222221111 22456666666666666
Q ss_pred hhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC--HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 265 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.+..+ .++..|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..+.+++.+..+
T Consensus 418 l~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 418 LKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 55432 2456666667777777777777777777766532 222 33566666666666777777776666665544
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.5e-16 Score=136.89 Aligned_cols=334 Identities=8% Similarity=-0.060 Sum_probs=226.8
Q ss_pred CCCCCChHHHHHHHHHHHHc--------CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC----CC-C-CCCHHHHH
Q 018882 2 LGKCKQPEKAHELFQAMVDE--------GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT----PD-C-QPDVNTYS 67 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~~ 67 (349)
+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++.... .+ . .....++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34679999999999887642 11234568999999999999999999999877542 11 1 22356666
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHhcCCCCchHHHHHHHHHH---hccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 68 ILIKSCLKA--FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY---GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 68 ~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
.+..++... +++++|...|++..+.. +-++..+..+..++ ...++.++|++.+++..+.. +.+...+..+...
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHH
Confidence 666666554 57899999999998874 22455555555443 34567788899998887664 3445555555544
Q ss_pred HH----ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc--
Q 018882 143 FG----NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-- 216 (349)
Q Consensus 143 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 216 (349)
+. ..+++++|.+.+++..... +.+..++..+...+...|++++|...+++..+..+. +..++..+...|...
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence 44 4567889999999988875 457788899999999999999999999999887644 566677666655332
Q ss_pred -----------------CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH--HHH
Q 018882 217 -----------------GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV--FFN 277 (349)
Q Consensus 217 -----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 277 (349)
+.++.|...++...+.. +.+..++..+...+...|++++|...|+...+....+... .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 23566777787776654 4456778889999999999999999999998766543322 233
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHhcCC-----------------------CCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 278 CLVD-AYGRLKCFAEMKGVLEVMQQRGC-----------------------KPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 278 ~li~-~~~~~g~~~~a~~~~~~m~~~~~-----------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
.+.. .+...|++++|+..|++...... +.+..+|..+..+|...|++++|.+.+++
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3332 24567899999998887765421 23567899999999999999999999999
Q ss_pred HHHHhhh
Q 018882 334 VEKMDET 340 (349)
Q Consensus 334 ~~~~~~~ 340 (349)
..++.+.
T Consensus 456 ALe~~~~ 462 (472)
T 4g1t_A 456 GLESGSL 462 (472)
T ss_dssp -------
T ss_pred HHhcCCC
Confidence 8887653
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=7.1e-17 Score=123.74 Aligned_cols=199 Identities=13% Similarity=0.011 Sum_probs=127.0
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 018882 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT 103 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (349)
|++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 5677788888888888999999999998888764 5677888888888888899999999888888774 335667777
Q ss_pred HHHHHhcc-----------CcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018882 104 LIDAYGRA-----------KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172 (349)
Q Consensus 104 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (349)
+..++... |++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 77777777 66666666666666543 2334555556666666666666666666666554 4555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.+..++...|++++|...|++..+..+. +...+..+...+...|++++|...+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666666555422 4555555666666666666666655543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.1e-16 Score=124.51 Aligned_cols=224 Identities=12% Similarity=-0.027 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCC--cc----hhhHHH
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE--PD----VWTMNC 138 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 138 (349)
.+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+++..+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44444555555555555555555555543 34455555555555555555555555554433100 01 344555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
+...+...|++++|...+++..+.. |+. ..+...|++++|...++.+...... +...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 5555555666666666665555542 221 2344455566666666666554322 44555666666666666
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
+++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+... .+...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666665543 33455666666666666666666666666655432 2455666666666666666666666666
Q ss_pred HHhc
Q 018882 299 MQQR 302 (349)
Q Consensus 299 m~~~ 302 (349)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4.3e-18 Score=139.77 Aligned_cols=251 Identities=13% Similarity=0.136 Sum_probs=111.2
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHH
Q 018882 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
+.|++++|.++++++. .| .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 6688999999999882 23 48999999999999999999999652 57789999999999999999999
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
..++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777764 4557888999999999999999988874 367789999999999999999999999966
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018882 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. .++.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 57999999999999999999999988 267999999999999999999965544322 23344557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHH
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
++..|.+.|++++|..+++...... +-....|+-+.-+|++- +++...+.++.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~ 265 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLEL 265 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 9999999999999999999988664 33566777777777665 34444444443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.4e-16 Score=124.18 Aligned_cols=230 Identities=13% Similarity=0.011 Sum_probs=198.0
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CC----HHH
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ--PS----INT 170 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 170 (349)
....+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34678888999999999999999999999887 77889999999999999999999999998875321 12 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+..+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 8999999999999999999999998864 342 34667788999999999998764 4456788889999999
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHH
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
.|++++|...++.+.+... .+..++..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999987654 367889999999999999999999999999874 23578899999999999999999999
Q ss_pred HHHHHHHhhh
Q 018882 331 QDLVEKMDET 340 (349)
Q Consensus 331 ~~~~~~~~~~ 340 (349)
++...++.++
T Consensus 230 ~~~a~~~~~~ 239 (258)
T 3uq3_A 230 LDAARTKDAE 239 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhChh
Confidence 9999888743
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=1.4e-16 Score=122.14 Aligned_cols=111 Identities=10% Similarity=-0.069 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018882 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (349)
|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444433333211 23333333333444444444444444333332 23333333333344444444444444
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 262 RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
+.+.+..+ .+...+..+...+...|++++|...+
T Consensus 175 ~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 175 AKALEQAP-KDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHTC-----------
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHH
Confidence 33333221 12333333333344444444443333
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=7.7e-16 Score=122.37 Aligned_cols=164 Identities=7% Similarity=-0.057 Sum_probs=75.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
|..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+... .+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 12334444444555555555555555544444321 133444444412222
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCC-CCch------HHHHHHHHHHHHh
Q 018882 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSD-IMLD------TVFFNCLVDAYGR 285 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~ 285 (349)
.+++++|...++.+.+.. +.+...+..+...+...|+ +++|...++.+.+.. ..|+ ..+|..+...|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 335555555555554432 2223444444445554454 455555555443321 0011 2355556666666
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018882 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~ 302 (349)
.|++++|...+++..+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666666655
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=3.6e-16 Score=124.48 Aligned_cols=222 Identities=9% Similarity=-0.083 Sum_probs=109.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 34444444444444444444444444332 2233444444455555555555555555544432 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
..|++++|...++++.+.. |+.......+..+...|++++|...++...... +++...+ .++..+...++.++|..
T Consensus 123 ~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHH
Confidence 5555555555555555433 222222223333344456666666665544432 2222222 24445555555566666
Q ss_pred HHHHHhhCCCCc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHH
Q 018882 260 VLRFIDNSDIML---DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 260 ~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
.++......... +...+..+...|.+.|++++|...|++..... |+. +.....++...|++++|.+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 666554432110 14566677777777777777777777777652 321 222344556666666666654
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=2.1e-15 Score=119.91 Aligned_cols=248 Identities=9% Similarity=-0.021 Sum_probs=170.8
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--hHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN--TVTYNT 103 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 103 (349)
|...+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.+..++ ...|..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34456667777888888888888888887763 34455777777788888888888888888877431111 223777
Q ss_pred HHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018882 104 LIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (349)
+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 7788888888888888888887664 3455677788888888888888888888877663 3356666666634444558
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCCc------HHHHHHHHHHHHhcCC
Q 018882 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD---LKQMEYLFRLMRSER-IKPS------CVTLCSLVRAYGHAGK 253 (349)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~ 253 (349)
+++|...++++.+.... +...+..+...+...|+ +++|...++++.+.. ..|+ ..++..+...+...|+
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 88888888888776533 46667777777777777 777888877776431 1132 2466677777888888
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHH
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
+++|...++.+.+..+ -+...+..+
T Consensus 237 ~~~A~~~~~~al~~~p-~~~~a~~~l 261 (272)
T 3u4t_A 237 KVKADAAWKNILALDP-TNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-cHHHHHHHh
Confidence 8888888888877653 244444443
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=2.2e-14 Score=114.08 Aligned_cols=224 Identities=8% Similarity=-0.058 Sum_probs=133.0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCchHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
++.++..+...+...|++++|++.|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 4556666666677777777777777766652 244556666666666 677777777777766654 55566
Q ss_pred HHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018882 102 NTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQIDTMEKCYEKFQSAGIQPSINTFNI 173 (349)
Q Consensus 102 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666666 666666666666666543 34455555566665 666666666666666544 3444555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 174 LLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 174 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
+...+.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...++...+.+. ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 5555555 566666666666655543 34455555555555 5666666666665555431 34444555
Q ss_pred HHHHh----cCChhhHHHHHHHHhhCC
Q 018882 246 RAYGH----AGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 246 ~~~~~----~~~~~~a~~~~~~~~~~~ 268 (349)
..+.. .+++++|...++...+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 55555 555555655555555543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=2.3e-16 Score=125.56 Aligned_cols=247 Identities=10% Similarity=-0.041 Sum_probs=110.7
Q ss_pred CCCChHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018882 4 KCKQPEKAHELFQAMVDEGC---DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 80 (349)
..|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.... +.+..++..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 34555555555555554321 0123445555555555555555555555554432 234445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+|...+++..+.. +.+...+..+..++...|++++|...++++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----------------------------------- 138 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFY----------------------------------- 138 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHH-----------------------------------
Confidence 5555555554432 1234444444444445555555555554444
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---Cc
Q 018882 161 SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK---PS 237 (349)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 237 (349)
+.. |+.......+..+...|++++|...++....... ++...+ .++..+...++.++|...+......... .+
T Consensus 139 ~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 139 QDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 432 2222222222233344555555555544443321 122222 2344444445555555555554332110 01
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
...+..+...+...|++++|...++.+....+. +. .....++...|++++|.+.+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 344555555666666666666666665554311 21 12233445555555555444
No 42
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=3.4e-14 Score=123.95 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=98.1
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018882 15 FQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI 94 (349)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 94 (349)
|++..+.. |-+...|..++.. .+.|++++|..+|+++.... |.+...|...+..+.+.|++++|..+|++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 45555553 4578899999984 78999999999999999864 567788999999999999999999999999987
Q ss_pred CCchHHHHHHHHHH-hccCcHHHHHH----HHHHHhcc-CCCc-chhhHHHHHHHHHc---------cCCHHHHHHHHHH
Q 018882 95 RPNTVTYNTLIDAY-GRAKMFAEMEL----TLVKMLSE-DCEP-DVWTMNCTLRAFGN---------SGQIDTMEKCYEK 158 (349)
Q Consensus 95 ~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~ 158 (349)
.|+...|..++... ...|+.++|.+ +|++.... |..| +...|...+..... .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 46777777776533 33455555544 66655432 3332 34455555544332 4556666666655
Q ss_pred HHh
Q 018882 159 FQS 161 (349)
Q Consensus 159 ~~~ 161 (349)
..+
T Consensus 156 al~ 158 (530)
T 2ooe_A 156 GCV 158 (530)
T ss_dssp HTT
T ss_pred HHh
Confidence 544
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=3.4e-14 Score=113.01 Aligned_cols=225 Identities=10% Similarity=-0.056 Sum_probs=154.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhH
Q 018882 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTM 136 (349)
Q Consensus 61 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 136 (349)
-+..++..+...+...+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356667777777777788888888887777632 45566667777777 777777877777777654 45566
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 018882 137 NCTLRAFGN----SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 137 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 667777777 777777777777777654 56667777777777 777777777777776654 4556666
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018882 209 VIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 209 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
+...+.. .+++++|...++...+.+ +...+..+...+.. .+++++|...++...+.+. ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 6666666 677777777777766653 34556666666666 7777777777777666542 44555666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcC
Q 018882 281 DAYGR----LKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 281 ~~~~~----~g~~~~a~~~~~~m~~~~ 303 (349)
..|.. .+++++|.+.|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 677777777777776664
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=2.8e-15 Score=124.09 Aligned_cols=196 Identities=7% Similarity=0.008 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA-FDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
.+|..+...+...|++++|++.|+++.... +-+..+|+.+..++...|+ +++|+..+++.+... +-+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 344445555555555555555555555442 3344455555555555553 555555555555542 224445555555
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK-AGHFE 185 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 185 (349)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 5555555555555555554443 2334444444444555555555555555544443 2244444444444444 33323
Q ss_pred HH-----HHHHHHHHhcCCCCchhhHHHHHHHHHhcC--ChHHHHHHHHHH
Q 018882 186 KM-----SAVMEYMQKYHYSWTIVTYNIVIDAFGRAG--DLKQMEYLFRLM 229 (349)
Q Consensus 186 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~ 229 (349)
+| +..+++.....+. +...|+.+...+...| ++++|.+.+..+
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 33 2444444433322 3344444444444433 344444444443
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.7e-14 Score=121.98 Aligned_cols=310 Identities=8% Similarity=-0.080 Sum_probs=221.1
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT-------PDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ----- 92 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 92 (349)
.....|+.|...+...|++++|++.|++..+. ...+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667999999999999999999999886531 111345678999999999999999999999887653
Q ss_pred C-C-CCchHHHHHHHHHHhc--cCcHHHHHHHHHHHhccCCCcchhhHHHHHHH---HHccCCHHHHHHHHHHHHhcCCC
Q 018882 93 G-I-RPNTVTYNTLIDAYGR--AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA---FGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 93 ~-~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+ . .....++..+..++.. .+++++|...|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1 1134556655555544 457999999999998764 2334444444444 445677888999999988764 3
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 166 PSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
.+..++..+...+.. .++.++|...+++.....+. +...+..+...+...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 456666666555544 46788999999998877644 67889999999999999999999999998764 4455666
Q ss_pred HHHHHHHHhc-------------------CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 242 CSLVRAYGHA-------------------GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 242 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
..+..+|... +..+.|...++...+... .+...+..+...|...|++++|...|++....
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666555322 235567777777766543 35667888999999999999999999999987
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCchhhhHHHHHHHHHHhh
Q 018882 303 GCKPDKV--TYRTMVR-AYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 303 ~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
...|... .+..+.. .....|++++|...+++..++.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 5443321 2233332 34578999999999888776543
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=8.9e-15 Score=114.84 Aligned_cols=199 Identities=9% Similarity=-0.036 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
..|..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 444555555555555555555555555432 3344555555555555555555555555555442 2244455555555
Q ss_pred HhccCcHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 108 YGRAKMFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 108 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
+...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555555411122 33344444445555555555555555544432 2234444444555555555555
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
|...++.+.+... .+...+..+...+...|++++|...++.+.+
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555554444322 2334444444444455555555555544443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=1.3e-15 Score=118.92 Aligned_cols=201 Identities=7% Similarity=-0.017 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 45566667777777888888888888777653 4566777777777777888888888877777653 33566667777
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777776654 3345566666666777777777777777766653 335556666666666677777
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+|...++.+.+.... +..++..+...+...|++++|...++.+.+.
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777766666655322 4556666666666666666666666666554
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=1.2e-14 Score=111.83 Aligned_cols=203 Identities=12% Similarity=-0.024 Sum_probs=146.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 46677778888888888888888888877653 4557777788888888888888888888877763 33666777777
Q ss_pred HHHhcc-CcHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018882 106 DAYGRA-KMFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183 (349)
Q Consensus 106 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (349)
..+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 888888 88888888888877632222 34566777777777888888888887777653 3356677777777777778
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888777777766543135666666666777777777777777776543
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=9.3e-15 Score=120.96 Aligned_cols=248 Identities=9% Similarity=0.002 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc-HHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
...|..+...+...|++++|+..+++.++.. +-+...|+.+..++...|+ +++|+..+++++... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4678888889999999999999999999874 3367889999999999997 999999999999875 456788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh-cCChH
Q 018882 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR-AGDLK 220 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 220 (349)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999885 448889999999999999999999999999988755 78999999999998 66657
Q ss_pred HH-----HHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC------
Q 018882 221 QM-----EYLFRLMRSERIKPSCVTLCSLVRAYGHAG--KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK------ 287 (349)
Q Consensus 221 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------ 287 (349)
+| +..+++..... +-+...|..+...+...| ++++|...+..+ +.. +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47888887754 456778888888888888 688999999888 443 346788889999998874
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCC-HHHHHHHHHHHH
Q 018882 288 ---CFAEMKGVLEVM-QQRGCKPD-KVTYRTMVRAYS 319 (349)
Q Consensus 288 ---~~~~a~~~~~~m-~~~~~~p~-~~~~~~l~~~~~ 319 (349)
..++|.++++++ .+. .|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999998 655 343 455665555543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=7.9e-15 Score=115.12 Aligned_cols=165 Identities=4% Similarity=-0.131 Sum_probs=72.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAF 213 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 213 (349)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.+..| +...+..+...+
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence 33333444444444444444444443332 1233344444444444444444444444444311111 233444444444
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 018882 214 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|.
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHH
Confidence 44455555555444444332 22334444445555555555555555555444322 23444444555555555555555
Q ss_pred HHHHHHHhc
Q 018882 294 GVLEVMQQR 302 (349)
Q Consensus 294 ~~~~~m~~~ 302 (349)
+.++++.+.
T Consensus 230 ~~~~~~~~~ 238 (252)
T 2ho1_A 230 SYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=6.6e-15 Score=113.34 Aligned_cols=162 Identities=9% Similarity=-0.125 Sum_probs=63.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHH
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA-GHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFG 214 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 214 (349)
..+...+...|++++|.+.++++.+.. +.+..++..+...+... |++++|...++.+.+.+..| +...+..+...+.
T Consensus 46 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (225)
T 2vq2_A 46 LVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence 333333333344444444433333321 11333333344444444 44444444444443311111 1233344444444
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.....+...+..+...+...|+.+.|..
T Consensus 125 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 125 KQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 4444444444444443322 122334444444444444444444444444333211233334444444444444444444
Q ss_pred HHHHHH
Q 018882 295 VLEVMQ 300 (349)
Q Consensus 295 ~~~~m~ 300 (349)
+++.+.
T Consensus 204 ~~~~~~ 209 (225)
T 2vq2_A 204 YEAQLQ 209 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=4.5e-16 Score=131.04 Aligned_cols=300 Identities=14% Similarity=0.036 Sum_probs=221.6
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQ----GIRP 96 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~ 96 (349)
.....+......+...|++++|...|++..... +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445567778888999999999999999988763 233 356778888999999999999998886543 2122
Q ss_pred -chHHHHHHHHHHhccCcHHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCC--------------------HH
Q 018882 97 -NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQ--------------------ID 150 (349)
Q Consensus 97 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~ 150 (349)
...++..+...+...|++++|...+++..+... .....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245777888899999999999999988765411 1124477788888999999 99
Q ss_pred HHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----chhhHHHHHHHHHhcCChH
Q 018882 151 TMEKCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-W----TIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 151 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~ 220 (349)
+|...+.+..+. +.. ....++..+...+...|++++|...+++..+.... + ...++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999988876543 111 12456788888999999999999999887653211 1 1347888889999999999
Q ss_pred HHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-chHHHHHHHHHHHHhcCCHH
Q 018882 221 QMEYLFRLMRSE----RIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIM-LDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 221 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~ 290 (349)
+|...+++..+. +..+ ...++..+...+...|++++|...++...+. +.. ....++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887642 1111 1457788889999999999999999887643 111 12557888999999999999
Q ss_pred HHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCchhh
Q 018882 291 EMKGVLEVMQQR----GCKP-DKVTYRTMVRAYSTNGMKNH 326 (349)
Q Consensus 291 ~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 326 (349)
+|...+++..+. +..+ ...++..+...+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999887654 2111 24567777788888887643
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=1.9e-15 Score=117.95 Aligned_cols=198 Identities=8% Similarity=-0.003 Sum_probs=93.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444444455555555555444432 2234444444445555555555555555544442 224444555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
..|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555444322 34455555555555555555555555554432 2334455555555555566666666
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.++.+.+... .+..++..+...|...|++++|...++++.+.
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 5555554432 23455555666666666666666666666554
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=4.5e-15 Score=125.31 Aligned_cols=272 Identities=10% Similarity=-0.028 Sum_probs=172.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCchH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLKAFAFDKVQALLSDMSTQ----G-IRPNTV 99 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 99 (349)
.+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...+++.... + .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34456667778888888888888877653 2233 46777777888888888888888776553 1 122345
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHccCC-----------------HHHHHHHHH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSED-----CEPDVWTMNCTLRAFGNSGQ-----------------IDTMEKCYE 157 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 157 (349)
++..+...|...|++++|...+++..+.. .+....++..+...+...|+ +++|.+.+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 66777777888888888888887766431 12234466667777777777 777777776
Q ss_pred HHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc----hhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 158 KFQSA----GI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WT----IVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 158 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
+..+. +. .....++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65432 11 112345666777777777877777777766543211 01 2356667777777777777777777
Q ss_pred HHHhCC----C-CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 228 LMRSER----I-KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-----IMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 228 ~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
+..+.. . .....++..+...+...|++++|...++...... ......++..+...|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 665321 0 0113456666777777777777777776654321 01123456666777777777777777777
Q ss_pred HHHhc
Q 018882 298 VMQQR 302 (349)
Q Consensus 298 ~m~~~ 302 (349)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=2.8e-15 Score=126.56 Aligned_cols=275 Identities=11% Similarity=0.005 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch----HHHHHHHHHHhccCcHHHHHHHHHHHhcc----C-CCcchh
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVW 134 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 134 (349)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+..+|...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556677888999999999999999987422 33 47888889999999999999999988654 1 123456
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSA----G-IQPSINTFNILLDSYGKAGH-----------------FEKMSAVME 192 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 192 (349)
.+..+...+...|++++|...+++..+. + .+....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888889999999999999999987654 1 12235578888899999999 999999988
Q ss_pred HHHhc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018882 193 YMQKY----HY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI---K--PSCVTLCSLVRAYGHAGKPEKLGSVLR 262 (349)
Q Consensus 193 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (349)
+..+. +. ......+..+...+...|++++|...+++..+... . ....++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11 11345788888999999999999999998865310 1 112378888999999999999999998
Q ss_pred HHhhCCC-----CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 263 FIDNSDI-----MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CK-PDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 263 ~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
....... .....++..+...|...|++++|...+++..... .. ....++..+..+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8764311 1125678889999999999999999999887641 11 124578888899999999999999999
Q ss_pred HHHHHhh
Q 018882 333 LVEKMDE 339 (349)
Q Consensus 333 ~~~~~~~ 339 (349)
...++.+
T Consensus 368 ~al~~~~ 374 (411)
T 4a1s_A 368 QHLQLAX 374 (411)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 8877643
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.1e-14 Score=122.48 Aligned_cols=279 Identities=11% Similarity=0.023 Sum_probs=214.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhcc----CCC-
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE- 130 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 130 (349)
.+....+......+...|++++|...|++..+.+.. + ..++..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 455667778888999999999999999999887422 3 357888889999999999999999987543 212
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC--------------------HH
Q 018882 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PS----INTFNILLDSYGKAGH--------------------FE 185 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 185 (349)
.....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 23567788888999999999999999987654110 11 4478888889999999 99
Q ss_pred HHHHHHHHHHhc----C-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHhcCChh
Q 018882 186 KMSAVMEYMQKY----H-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIK-PSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 186 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~ 255 (349)
+|...+++.... + ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876542 1 1112457888889999999999999999887643 111 11247888899999999999
Q ss_pred hHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCchh
Q 018882 256 KLGSVLRFIDNS----DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CKP-DKVTYRTMVRAYSTNGMKN 325 (349)
Q Consensus 256 ~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~g~~~ 325 (349)
+|...++..... +..+ ...++..+...|...|++++|...+++..... -.+ ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887642 1111 15678889999999999999999999887641 111 1557888889999999999
Q ss_pred hhHHHHHHHHHHhh
Q 018882 326 HAKEFQDLVEKMDE 339 (349)
Q Consensus 326 ~a~~~~~~~~~~~~ 339 (349)
+|.+.++...++.+
T Consensus 325 ~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 325 QAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877644
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=5.2e-13 Score=122.83 Aligned_cols=268 Identities=13% Similarity=0.132 Sum_probs=186.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHH
Confidence 3456788888888887521 2222333333 567788888887754 235677788888888888888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 88888553 267778888888888888888888888777654 33333335778888888877544332 2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018882 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
.++...|..+...|...|++++|...|... ..|..+...+.+.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 345566667888888888888888888774 47888888888888888888888765 345778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|.-+..+|++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 88888888888877777655432 2355667788888888888888888887776443 1233345444444444
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.66 E-value=4.3e-14 Score=118.15 Aligned_cols=234 Identities=9% Similarity=-0.109 Sum_probs=145.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHhcc----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcC--C----CCCHHHHH
Q 018882 104 LIDAYGRAKMFAEMELTLVKMLSE----DCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG--I----QPSINTFN 172 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 172 (349)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+.+..+.- . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777766543 1111 23556666667777777777777776655431 0 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCcHHHHH
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RI-KPSCVTLC 242 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 242 (349)
.+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777777777777777766543111 11246667777777778888877777776551 22 33456677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC----CCCchHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC-HHHHHHH
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRGCKPD-KVTYRTM 314 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l 314 (349)
.+...+...|++++|...++...+. +-+.....+..+...|...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 7777777888888887777765432 111223335667777777777 56666666554 22222 3456677
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 315 VRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
...|...|++++|.+.++...++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 77888888888888888887777654
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=8.7e-15 Score=119.77 Aligned_cols=200 Identities=14% Similarity=0.079 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-Cch
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQ----GIR-PNT 98 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 98 (349)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344555666777788888888888777652 223 355667777777788888887777765443 111 124
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCC--------------------HHHHH
Q 018882 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQ--------------------IDTME 153 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~ 153 (349)
.++..+...+...|++++|...+++..+... .....++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 4566666777777777777777766554310 0112345555566666666 55665
Q ss_pred HHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchhhHHHHHHHHHhcCChHHHH
Q 018882 154 KCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQME 223 (349)
Q Consensus 154 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~ 223 (349)
+.+++..+. +.. ....++..+...+...|++++|...+++..+.... ....++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555554321 100 11223444555555555555555555544322100 01123444444444555555555
Q ss_pred HHHHHH
Q 018882 224 YLFRLM 229 (349)
Q Consensus 224 ~~~~~~ 229 (349)
..+++.
T Consensus 244 ~~~~~a 249 (338)
T 3ro2_A 244 EYYKKT 249 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=3.2e-13 Score=109.25 Aligned_cols=235 Identities=6% Similarity=-0.057 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhcCCCCchHHHHHHHHHHhc-------cCcH-------HHHHHH
Q 018882 63 VNTYSILIKSCLKA----FAF----DKVQALLSDMSTQGIRPNTVTYNTLIDAYGR-------AKMF-------AEMELT 120 (349)
Q Consensus 63 ~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 120 (349)
...|...+....+. ++. ++|..+|++..... +-+...|..+...+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555555554443 233 56777888877753 4466777777776653 4664 788888
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS-IN-TFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
|++....-.+.+...|..++..+...|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888876311334557777777788888888888888887774 332 33 67777777778888888888888877654
Q ss_pred CCCchhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCc--hHH
Q 018882 199 YSWTIVTYNIVIDAFG-RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-IML--DTV 274 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~ 274 (349)
. .+...|........ ..|++++|..+|+...+.. +.+...|..++..+...|++++|..+|+...... ..| ...
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3 24444443333322 2578888888888776543 3456777777777777888888888888877752 233 356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.|..++..+.+.|+.+.|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777788888888888877765
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=6e-14 Score=117.28 Aligned_cols=295 Identities=9% Similarity=-0.064 Sum_probs=213.6
Q ss_pred CCCCChHHHHHHHHHHHHc--CCCC--ChhhHHHHHHH--HHcCCChhHHH-----------HHHHHhhcCCCCCCCHHH
Q 018882 3 GKCKQPEKAHELFQAMVDE--GCDA--NTQSFTALLSA--YGRSGLFDKAF-----------SLLEHMKNTPDCQPDVNT 65 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~~ 65 (349)
.+.+++++|..+++++.+. .... +...|..++.. ....++++.+. +.++.+... +.+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~~~~ 99 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QARLTG 99 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc---CCCchh
Confidence 3578999999999998764 2222 33344444433 22345566666 777777654 222222
Q ss_pred HHH------HHHHHHhcCChhHHHHHHHHHHhc----CCCC-chHHHHHHHHHHhccCcHHHHHHHHHHHhccCC-----
Q 018882 66 YSI------LIKSCLKAFAFDKVQALLSDMSTQ----GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC----- 129 (349)
Q Consensus 66 ~~~------ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 129 (349)
+.. ....+...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+...
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222 556677899999999999998764 2112 346788899999999999999999999876411
Q ss_pred C-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC
Q 018882 130 E-PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PS----INTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY 199 (349)
Q Consensus 130 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 199 (349)
. ....+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1 12357788889999999999999999998764211 11 247888999999999999999999988762 22
Q ss_pred -CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCc
Q 018882 200 -SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 200 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 271 (349)
+....++..+...+...|++++|...+++..+. +-+.....+..+...+...|+ .++|..+++.... ...
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHH
Confidence 335678899999999999999999999988653 212223345678888888898 6666666666522 122
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
....+..+...|...|++++|...+++..+.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3457778999999999999999999988764
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=1.4e-12 Score=120.13 Aligned_cols=280 Identities=14% Similarity=0.113 Sum_probs=222.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++++|.++.++. .++.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+
T Consensus 1089 i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 35556666665543 35778999999999999999999999653 467788889999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI 164 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (349)
.+....+.. +++...+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 999887764 34444445999999999988644442 1 345566778999999999999999999985
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 37999999999999999999999877 26799999999999999999998877643 3456677799
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CHHHHHHHHH
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVMQQRGCKP------DKVTYRTMVR 316 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~~~~~l~~ 316 (349)
+..|.+.|.+++|+.+++...... +-....|+.+...|++. ++..++.++|..-. +++| +...|..++.
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHH
Confidence 999999999999999999888765 34667888888777774 34555555555332 2222 5678999999
Q ss_pred HHHhcCchhhhHH
Q 018882 317 AYSTNGMKNHAKE 329 (349)
Q Consensus 317 ~~~~~g~~~~a~~ 329 (349)
.|.+.|+++.|..
T Consensus 1364 LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1364 LYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhcccHHHHHH
Confidence 9999999998884
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=1.1e-14 Score=119.13 Aligned_cols=275 Identities=11% Similarity=0.010 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhccCcHHHHHHHHHHHhcc----CC-Ccchh
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-EPDVW 134 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 134 (349)
..+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.... +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555677888999999999999999887422 3 367888899999999999999999887643 21 22356
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPS----INTFNILLDSYGKAGH--------------------FEKMSA 189 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 189 (349)
.+..+...+...|++++|...+.+..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888999999999999999998765311 112 3477888889999999 999999
Q ss_pred HHHHHHhc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCcHHHHHHHHHHHHhcCChhhHHH
Q 018882 190 VMEYMQKY----HY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RI-KPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 190 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
.+++.... +. ......+..+...+...|++++|...+++..+. +. .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98876542 11 112457888888999999999999999887643 11 1113377888899999999999999
Q ss_pred HHHHHhhC----CCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCchhhhHH
Q 018882 260 VLRFIDNS----DIM-LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCK-PDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 260 ~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
.++...+. +.. ....++..+...|...|++++|...+++.... +-. ....++..+...|...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99887542 111 12567788899999999999999999988654 111 124577888899999999999999
Q ss_pred HHHHHHHHhh
Q 018882 330 FQDLVEKMDE 339 (349)
Q Consensus 330 ~~~~~~~~~~ 339 (349)
.++...++.+
T Consensus 325 ~~~~a~~~~~ 334 (338)
T 3ro2_A 325 FAEKHLEISR 334 (338)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=6.1e-13 Score=107.62 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------cCCCh-------hHHHHHHHHhhc-CCCCCCCHHHHHHHHHHH
Q 018882 9 EKAHELFQAMVDEGCDANTQSFTALLSAYG-------RSGLF-------DKAFSLLEHMKN-TPDCQPDVNTYSILIKSC 73 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~ll~~~ 73 (349)
++|..+|++..+.. +.++..|..++..+. +.|++ ++|..+|++... .. +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 67788888888763 556777877777765 35775 788888888877 32 34556788888888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCc-hH-HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH-HccCCHH
Q 018882 74 LKAFAFDKVQALLSDMSTQGIRPN-TV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF-GNSGQID 150 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 150 (349)
.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +.+...|....... ...|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888875 343 33 67777888888888888888888887654 23333443332222 1257777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--chhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSW--TIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
+|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++..... .+| ....|..++....+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777776653 3356667777777777777777777777777652 233 34566777777777777777777777
Q ss_pred HHHhC
Q 018882 228 LMRSE 232 (349)
Q Consensus 228 ~~~~~ 232 (349)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=4.3e-14 Score=121.21 Aligned_cols=216 Identities=8% Similarity=-0.064 Sum_probs=163.5
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH
Q 018882 42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF-DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
.+++++..++...... +.+...+..+..++...|++ ++|...|++..+.. +-+...|..+..+|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3667777777766553 45677777888888888888 88888888887763 33567788888888888888888888
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CC
Q 018882 121 LVKMLSEDCEPDVWTMNCTLRAFGNS---------GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA--------GH 183 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 183 (349)
|++..+.. |+...+..+...+... |++++|.+.+++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 88887663 5567777788888888 88888888888887764 34677788888888877 88
Q ss_pred HHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018882 184 FEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 184 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (349)
+++|...|++..+.... .+...|..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888776431 367788888888888888888888888887654 345567777788888888888887765
Q ss_pred HHH
Q 018882 262 RFI 264 (349)
Q Consensus 262 ~~~ 264 (349)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=2.2e-13 Score=101.46 Aligned_cols=166 Identities=11% Similarity=-0.014 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
+.+|..+...+...|++++|.+.|++..+.. +-+..++..+...+.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555543 224445555555555555555555555555444322 34444444455
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+...++++.+...+....... +.+...+..+...+...|++++|...++...+..+ .+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555544432 23344445555555555555555555555544332 2444455555555555555555
Q ss_pred HHHHHHHHhc
Q 018882 293 KGVLEVMQQR 302 (349)
Q Consensus 293 ~~~~~~m~~~ 302 (349)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 5555555443
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=3.9e-14 Score=120.72 Aligned_cols=304 Identities=14% Similarity=0.068 Sum_probs=188.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCh---hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC---
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLF---DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF--- 77 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--- 77 (349)
+.|++++|.+.|++..+.| ++.++..+...+...|+. ++|++.|++..+. +...+..+...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CC
T ss_pred hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCC
Confidence 4578888888888887765 444555666666667777 7888888877642 4445555555444444
Q ss_pred --ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc---------------------------------------HHH
Q 018882 78 --AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM---------------------------------------FAE 116 (349)
Q Consensus 78 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------~~~ 116 (349)
++++|..+|++..+.|.. ..+..|...|...+. .+.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 667888888887776532 234444444433322 222
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHH
Q 018882 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSG---QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA----GHFEKMSA 189 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~ 189 (349)
+..+++... ..+...+..+...|...| +.++|.+.|++..+.| +++...+..+...|... +++++|..
T Consensus 164 a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 164 VERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 222333322 223336777778888888 8888999999888887 44666556677777554 68899999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-----ChhhHHHHH
Q 018882 190 VMEYMQKYHYSWTIVTYNIVIDA-F--GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-----KPEKLGSVL 261 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~ 261 (349)
.|++.. .+ ++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|...|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 998887 33 56666777666 4 46789999999999888766 5566777777776 55 888999998
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCchhhhHHHHHH
Q 018882 262 RFIDNSDIMLDTVFFNCLVDAYGR----LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDL 333 (349)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 333 (349)
+... .+ ++..+..|...|.. ..++++|...|+...+.| +......+...|.. ..+.++|..++++
T Consensus 311 ~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 311 EKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 8877 33 55667777777766 348899999999988876 34555666666654 4578888888887
Q ss_pred HHHHh
Q 018882 334 VEKMD 338 (349)
Q Consensus 334 ~~~~~ 338 (349)
..+..
T Consensus 384 A~~~g 388 (452)
T 3e4b_A 384 AKAQD 388 (452)
T ss_dssp HHTTC
T ss_pred HHHCC
Confidence 76543
No 68
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=3.4e-13 Score=114.89 Aligned_cols=314 Identities=13% Similarity=0.094 Sum_probs=195.9
Q ss_pred CCCCh---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC-----ChhHHHHHHHHhhcCCCCCCC-------------
Q 018882 4 KCKQP---EKAHELFQAMVDEGCDANTQSFTALLSAYGRSG-----LFDKAFSLLEHMKNTPDCQPD------------- 62 (349)
Q Consensus 4 ~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~------------- 62 (349)
..|+. ++|++.|++..+. ++..+..+...+...+ ++++|+..|++....+ .++
T Consensus 47 ~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 47 GTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYP 120 (452)
T ss_dssp ----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCG
T ss_pred ccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence 34555 6777777666543 4455555555444443 5667777777666542 122
Q ss_pred --------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC---cHHHHHH
Q 018882 63 --------------------VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK---MFAEMEL 119 (349)
Q Consensus 63 --------------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~ 119 (349)
......+...+...+.++++......+.+.-...++..+..|...|...| +.++|++
T Consensus 121 ~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp GGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 12222333333333433333332222222211234447888888888899 9999999
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHcc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHH
Q 018882 120 TLVKMLSEDCEPDVWTMNCTLRAFGNS----GQIDTMEKCYEKFQSAGIQPSINTFNILLDS-Y--GKAGHFEKMSAVME 192 (349)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~ 192 (349)
.|++..+.| .++...+..+...|... +++++|.++|++.. .| +...+..+... + ...+++++|...|+
T Consensus 201 ~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 999999887 56666556677777655 79999999999987 43 55666667666 4 46899999999999
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHH
Q 018882 193 YMQKYHYSWTIVTYNIVIDAFGRAG-----DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRF 263 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 263 (349)
+..+.| +...+..+...|. .| ++++|...|+... +-+......+...|.. ..++++|...++.
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 998876 6777888888777 55 9999999999876 3456677777777766 3489999999999
Q ss_pred HhhCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 264 IDNSDIMLDTVFFNCLVDAYGR----LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
..+.|. ......|...|.. ..+..+|...|+...+.|.. +.......+......++.++|.++.+...+...
T Consensus 348 Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 348 AARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp HHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 988774 3455567777764 46899999999999998742 333333333333344556666666666555544
Q ss_pred h
Q 018882 340 T 340 (349)
Q Consensus 340 ~ 340 (349)
.
T Consensus 424 ~ 424 (452)
T 3e4b_A 424 T 424 (452)
T ss_dssp H
T ss_pred c
Confidence 3
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=7.1e-15 Score=119.05 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc------C
Q 018882 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-------GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------D 128 (349)
Q Consensus 62 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 128 (349)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3556777777788888888888888877663 22334556677777777778888888777777643 1
Q ss_pred -CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 018882 129 -CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA------GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY--- 197 (349)
Q Consensus 129 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 197 (349)
.+.....+..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223455666667777777777777777766553 1111 2344556666666667777776666666543
Q ss_pred ---CCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 198 ---HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 198 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+..| ...++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 234555566666666666666666666554
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=5e-13 Score=99.49 Aligned_cols=169 Identities=11% Similarity=0.014 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018882 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
++.+|..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3444555555555555555555555555544322 44455555555555555555555555544332 223344444445
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhh
Q 018882 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNH 326 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 326 (349)
.+...++++.+...+........ .+...+..+...|.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555444332 2344455555555555555555555555554421 134445555555555555555
Q ss_pred hHHHHHHHHHHhh
Q 018882 327 AKEFQDLVEKMDE 339 (349)
Q Consensus 327 a~~~~~~~~~~~~ 339 (349)
|.+.+++..++++
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 5555555544443
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.5e-14 Score=115.82 Aligned_cols=247 Identities=16% Similarity=0.115 Sum_probs=163.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------C
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP------DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ------G 93 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 93 (349)
+..++..+...+...|++++|..+|+++.+.. ..+.....+..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46678889999999999999999999987620 11334567888889999999999999999998764 2
Q ss_pred C-CCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc------CC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---
Q 018882 94 I-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------DC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--- 162 (349)
Q Consensus 94 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 162 (349)
- +....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 234567888889999999999999999988764 21 234566788888999999999999999998765
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 163 ---GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 163 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+..| ...++..+...+...|++++|...++++.+.... +.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 2122 3557888889999999999999999988764210 00000000
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 232 ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
....+..+...+...+.+.++...+....... +.+..++..+...|.+.|++++|.+.+++..+
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01111222222333445555555555554432 23455666677777777777777777766654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.3e-13 Score=118.32 Aligned_cols=215 Identities=8% Similarity=-0.059 Sum_probs=184.7
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcH-HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF-AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
.++++...++...... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4677788888766653 34788899999999999999 99999999998775 445788999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc--------CCh
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKA---------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA--------GDL 219 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 219 (349)
++..+. .|+...+..+...+... |++++|...+++..+.... +...|..+..++... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 999987 46678899999999999 9999999999999887644 688899999999988 999
Q ss_pred HHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 220 KQMEYLFRLMRSERIK---PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
++|...|++..+.. + .+...+..+..++...|++++|...++.+.+... .+...+..+...+...|++++|...+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998754 3 4788899999999999999999999999987654 36778888999999999999998776
Q ss_pred HHH
Q 018882 297 EVM 299 (349)
Q Consensus 297 ~~m 299 (349)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.56 E-value=1.2e-11 Score=102.83 Aligned_cols=302 Identities=11% Similarity=0.000 Sum_probs=204.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCc----hH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN----TYSILIKSCLKAFAFDKVQALLSDMSTQGI-RPN----TV 99 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 99 (349)
.+......+...|++++|...+++...... ..+.. +++.+...+...|++++|...+++...... ..+ ..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455667789999999999999876532 22222 456667788889999999999998765311 111 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhcc----CCC--c-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC----CH
Q 018882 100 TYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE--P-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP----SI 168 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~ 168 (349)
++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..... ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566778888999999999999988753 211 2 23456667788899999999999999987653221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hhhHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT-IVTYN-----IVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCV 239 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 239 (349)
.++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4677788888999999999999998865422211 11222 23344778999999999998876543211 123
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhh----CCCCchH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDN----SDIMLDT-VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTM 314 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 314 (349)
.+..+...+...|++++|...++.... .+..++. ..+..+..++...|+.++|...+++...... . ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccH
Confidence 466778888999999999999987653 2322233 3666778888999999999999988876411 0 112
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 315 VRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+..+...| +....+++.+.+..+
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHcc--HHHHHHHHHHHhCCC
Confidence 23344445 445555555544443
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.56 E-value=3.7e-12 Score=106.16 Aligned_cols=314 Identities=13% Similarity=0.021 Sum_probs=214.6
Q ss_pred CCChhhHHHHHHHH--HcCCChhHHHHHHHHhhcCC-CC--CCCHHHHHHHHHH--HHhcCChhHHH---------HHHH
Q 018882 24 DANTQSFTALLSAY--GRSGLFDKAFSLLEHMKNTP-DC--QPDVNTYSILIKS--CLKAFAFDKVQ---------ALLS 87 (349)
Q Consensus 24 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~ll~~--~~~~~~~~~a~---------~~~~ 87 (349)
.|+..+-+.|-.-| ...+++++|.++++++.+.. .. .++...|-.++.. ..-.+...... ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35555555555555 78899999999998875421 11 2233333433332 11122333333 6666
Q ss_pred HHHhcCCCCch----HHHHHHHHHHhccCcHHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018882 88 DMSTQGIRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 88 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
.+.....+.+. ..+......+...|++++|...+++..+... .....++..+...|...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65443211111 1223344556788999999999999876421 11345778888899999999999999988
Q ss_pred HHhcCC-----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHH
Q 018882 159 FQSAGI-----Q-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY-SWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 159 ~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
..+... . ....+++.+...|...|++++|...+++..+. +. .....++..+...+...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 765311 1 12456788899999999999999999887653 11 1124578888999999999999999999
Q ss_pred HHHh-----CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCchHHHHHHHHHHHHhcCC---HHHHHHH
Q 018882 228 LMRS-----ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDTVFFNCLVDAYGRLKC---FAEMKGV 295 (349)
Q Consensus 228 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~ 295 (349)
+..+ .. +....++..+...+...|++++|...++...+. +.+.....+..+...|...++ +.+|...
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8876 33 334678888999999999999999999987653 222334456777777888888 7777777
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhhh
Q 018882 296 LEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 296 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
++. .+..|+ ...+..+...|...|++++|.+.+++..+.....
T Consensus 326 ~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 326 FEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 765 332333 3466778889999999999999999988776543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=2.9e-11 Score=100.60 Aligned_cols=291 Identities=10% Similarity=0.038 Sum_probs=179.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANT----QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLK 75 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~ 75 (349)
..|++++|...+++..+.....+. .+++.+...+...|++++|.+.+++......-.++. .++..+...+..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 468888888888887765311222 145566677778888888888888776531111222 234566677778
Q ss_pred cCChhHHHHHHHHHHhc----CCC--C-chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCC--c--chhhHHHHHHHHH
Q 018882 76 AFAFDKVQALLSDMSTQ----GIR--P-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE--P--DVWTMNCTLRAFG 144 (349)
Q Consensus 76 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~ 144 (349)
.|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ....+..+...+.
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 88888888888877653 221 2 2345566777788888888888888877654211 1 2345666777788
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHh
Q 018882 145 NSGQIDTMEKCYEKFQSAGIQPS--INTFN----ILLDSYGKAGHFEKMSAVMEYMQKYHYSW---TIVTYNIVIDAFGR 215 (349)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 215 (349)
..|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+..+...+..
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 265 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 265 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 88888888888888765421111 11111 23344667888888888887776543221 12245666777888
Q ss_pred cCChHHHHHHHHHHHhC----CCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 216 AGDLKQMEYLFRLMRSE----RIKPSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.|++++|...++..... +..++. ..+..+..++...|+.++|...++....... . .-.+..+...| +
T Consensus 266 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~~~~~~g--~ 337 (373)
T 1hz4_A 266 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFISHFVIEG--E 337 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCHHHHTTH--H
T ss_pred cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHHHHHHcc--H
Confidence 88888888888776532 222222 2556667777888888888888887765311 1 11223334444 4
Q ss_pred HHHHHHHHHHhc
Q 018882 291 EMKGVLEVMQQR 302 (349)
Q Consensus 291 ~a~~~~~~m~~~ 302 (349)
....+++.+...
T Consensus 338 ~~~~ll~~~~~~ 349 (373)
T 1hz4_A 338 AMAQQLRQLIQL 349 (373)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 555566665554
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=6.1e-12 Score=104.88 Aligned_cols=295 Identities=8% Similarity=-0.045 Sum_probs=203.7
Q ss_pred CCCCChHHHHHHHHHHHHcC--CC--CChhhHHHHHHH--HHcCCChhHHH---------HHHHHhhcCCCCCCC-HH--
Q 018882 3 GKCKQPEKAHELFQAMVDEG--CD--ANTQSFTALLSA--YGRSGLFDKAF---------SLLEHMKNTPDCQPD-VN-- 64 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~--~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~-~~-- 64 (349)
.+.+++++|.++++++.+.. .. ++...|-.++.. ..-.+.++.+. +.++.+..... +.+ ..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~-~~~~~l~~ 101 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK-KLTGLLKY 101 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH-HHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC-CCccHHHH
Confidence 35789999999999887641 21 233334444432 11112222233 66666654311 111 11
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CC----chHHHHHHHHHHhccCcHHHHHHHHHHHhccC----C-C-cc
Q 018882 65 -TYSILIKSCLKAFAFDKVQALLSDMSTQGI-RP----NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED----C-E-PD 132 (349)
Q Consensus 65 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~-~~ 132 (349)
.+......+...|++++|...+++..+... .+ ...++..+..+|...|+++.|...+++..+.. . . ..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 223344566789999999999999876411 11 34577888999999999999999999877531 1 1 12
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQK-----YHYSWT 202 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~ 202 (349)
..+++.+..+|...|++++|.+.+.+..+. +.. ....++..+...|...|++++|...+++..+ .... .
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H
Confidence 557788889999999999999999987763 111 1245678889999999999999999998876 4333 4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCc-hHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSER----IKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIML-DTV 274 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~ 274 (349)
..++..+...+.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...++.. +..+ ...
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHH
Confidence 7788899999999999999999999987532 22233455666667777788 66666666653 2222 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+..+...|...|++++|...|++..+.
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6778999999999999999999988653
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=2.3e-12 Score=114.99 Aligned_cols=164 Identities=8% Similarity=-0.018 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
...++.+..++.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444555555555555555555555554442 223444555555555555555555555555444322 34445555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+...|++++|.+.|++..+.. +-+...+..+..++...|++++|+..+++..+... -+...+..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555444432 22334444444444455555555555544444332 1334444444444444444444
Q ss_pred HHHHHHHH
Q 018882 293 KGVLEVMQ 300 (349)
Q Consensus 293 ~~~~~~m~ 300 (349)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=5.4e-12 Score=93.68 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (349)
.+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344445555555555555555555544322 244555555555555566666665555554432 234455555555566
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHH
Q 018882 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
..|++++|...++.+.+... .+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665554432 245555666666666666666666666666553 2245566666666666666666666
Q ss_pred HHHHHHHHhh
Q 018882 330 FQDLVEKMDE 339 (349)
Q Consensus 330 ~~~~~~~~~~ 339 (349)
.++...+..+
T Consensus 166 ~~~~~~~~~~ 175 (186)
T 3as5_A 166 HFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
Confidence 6666655544
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=5.1e-12 Score=93.86 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=110.4
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
...+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3456666777777788888888877776653 4466677777777777777777777777776653 335566666777
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766553 3345556666666666777777777776666553 3345566666666666666666
Q ss_pred HHHHHHHHHhc
Q 018882 187 MSAVMEYMQKY 197 (349)
Q Consensus 187 a~~~~~~~~~~ 197 (349)
|...++.+.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666665543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=7.1e-12 Score=111.89 Aligned_cols=165 Identities=8% Similarity=0.009 Sum_probs=90.4
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
++.+|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34556666666666666666666666665542 3345556666666666666666666666655542 22345555555
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
.+|...|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.. +-+...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 56666666666666665555443 2234455555555555555555555555555442 223445555555555555555
Q ss_pred HHHHHHHHHH
Q 018882 186 KMSAVMEYMQ 195 (349)
Q Consensus 186 ~a~~~~~~~~ 195 (349)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=6.7e-11 Score=91.13 Aligned_cols=196 Identities=13% Similarity=0.004 Sum_probs=136.1
Q ss_pred CchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175 (349)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (349)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677777888888888888888888888876633666677778888888888888888888888764 33667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCch-------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--cHHHHHHHHH
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTI-------VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP--SCVTLCSLVR 246 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 246 (349)
..+...|++++|...+++..+..+. +. ..|..+...+...|++++|...++...+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 8888888888888888888776533 34 457777777778888888888888877653 22 3456666666
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
++...| ...++.+...+. .+...|.... ....+.+++|...+++..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 665443 334455444432 2333333332 33455678888888888776
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=1.8e-12 Score=103.24 Aligned_cols=229 Identities=12% Similarity=0.028 Sum_probs=161.1
Q ss_pred CCCCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC------CCCCCCHHHHHHH
Q 018882 3 GKCKQPEKAHELFQAMVDE-------GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT------PDCQPDVNTYSIL 69 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 69 (349)
...|++++|+..|++..+. ..+....++..+...+...|++++|+..+++.... ...+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888877652 21234677889999999999999999999988754 2213345678899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc------C-CCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc------C-CCcchhh
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQ------G-IRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------D-CEPDVWT 135 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 135 (349)
...+...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 1 1234667888999999999999999999998765 1 1234567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCC
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSA-------GIQP-SINTFNILLDSYGKAGHFE------KMSAVMEYMQKYHYSW 201 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~ 201 (349)
+..+...+...|++++|...+++..+. ...+ ....+..+.......+... .+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998764 1122 2233333333333333322 222222221111 122
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
...++..+...+...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999988653
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=5.4e-12 Score=100.45 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=73.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-CC
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSA------G-IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY------H-YS 200 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~ 200 (349)
++..+...+...|++++|...+.+..+. . .+....++..+...+...|++++|...+++..+. + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444444444444444444444444332 0 0112334445555555555555555555554432 0 11
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCc-HHHHHHHHHHHHhcCChhhHHH------HHHHHhh
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-------RIKPS-CVTLCSLVRAYGHAGKPEKLGS------VLRFIDN 266 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~ 266 (349)
....++..+...+...|++++|...++++.+. ...+. ...+..+.......+....+.. .++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 12344555555556666666666665555431 11111 1222222222222222222211 1111111
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 267 SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
..+....++..+...|...|++++|..++++..+
T Consensus 247 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 -DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122345666777777777777777777776654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=3.4e-11 Score=92.81 Aligned_cols=199 Identities=10% Similarity=-0.002 Sum_probs=156.0
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4557788888899999999999999999998864467788888999999999999999999999887644 678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSC-------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVD 281 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 281 (349)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++.+.+... . +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHHH
Confidence 99999999999999999988754 3344 4578888889999999999999999988642 2 3567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+|...| ..+++.+...+. .+...+.... ....+.+++|...++...++.+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 876654 344555555532 2344444433 34456789999999998888664
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=5.1e-09 Score=92.69 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC---hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh--
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL---FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF-- 79 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-- 79 (349)
.+.++.+..+|+++... +|.+...|..-+..-.+.++ ++.+..+|++.......+|+...|..-+....+.++.
T Consensus 79 ~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred cCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 46778888888888876 45667778777777777777 8888888888877632237777777777665555443
Q ss_pred ------hHHHHHHHHHHhc-CC-CCc-hHHHHHHHHHH
Q 018882 80 ------DKVQALLSDMSTQ-GI-RPN-TVTYNTLIDAY 108 (349)
Q Consensus 80 ------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~ 108 (349)
+.+.++|+..... |. .++ ...|...+...
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~ 195 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFL 195 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 2344666665442 54 443 45666655443
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.37 E-value=3.6e-11 Score=96.35 Aligned_cols=208 Identities=13% Similarity=0.030 Sum_probs=118.0
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhcc----CCCcc-hhhHHHHHHHHHccCCHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCEPD-VWTMNCTLRAFGNSGQIDTM 152 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 152 (349)
++++|...+.+. ...|...|++++|...|.+.... +-+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 33456677777777777766543 21111 45667777777777777777
Q ss_pred HHHHHHHHhcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-c----hhhHHHHHHHHHhcCChHH
Q 018882 153 EKCYEKFQSAGI---QP--SINTFNILLDSYGKA-GHFEKMSAVMEYMQKYHYSW-T----IVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 153 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 221 (349)
...+++..+... .+ ...++..+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777777655311 11 134566666777774 77777777777665432110 1 2456666777777777777
Q ss_pred HHHHHHHHHhCCCCCcH------HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hH---HHHHHHHHHHH--hcCCH
Q 018882 222 MEYLFRLMRSERIKPSC------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DT---VFFNCLVDAYG--RLKCF 289 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~li~~~~--~~g~~ 289 (349)
|...+++..+....... ..+..+..++...|++++|...++...+..+.. +. ..+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 77777776654322111 145556666777777777777777766543211 11 12233444443 23455
Q ss_pred HHHHHHHHHHH
Q 018882 290 AEMKGVLEVMQ 300 (349)
Q Consensus 290 ~~a~~~~~~m~ 300 (349)
++|...|+.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 56655554433
No 87
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=9.2e-09 Score=91.06 Aligned_cols=206 Identities=12% Similarity=0.004 Sum_probs=144.6
Q ss_pred hhhHHHHHHHHHccCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CC-
Q 018882 133 VWTMNCTLRAFGNSGQIDTME-KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---------SW- 201 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~- 201 (349)
...|...+..+...|+.++|. ++|++.... .+.+...|..++...-+.|+++.|..+|+.+..... .|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 334444445555667777786 888888765 345666677788888888999999999988875310 12
Q ss_pred -----------chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-CChhhHHHHHHHHhhCCC
Q 018882 202 -----------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA-GKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 202 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 269 (349)
....|...+....+.|+.+.|..+|..+.+.........|...+..-.+. ++.+.|..+|+...+. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 13467777777778888999999999887651122233443333222333 4588999999888775 3
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+-+...|...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+..+.+++.+..+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3356677788888888899999999999988764322 3457888888778889999999998888777654
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=1.6e-09 Score=85.44 Aligned_cols=244 Identities=7% Similarity=0.033 Sum_probs=164.7
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
++-..-.|++..++.-...+... .++ ..-..+.++++..|+++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~---~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKV---TDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCC---CCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCcc---chH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 44555689999888844433221 232 3334456788888877642 12234444555444444 322
Q ss_pred HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
|+..+++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677888877665 45555566788888899999999999998877653 2367778888899999999999999999
Q ss_pred HHHhcCCCC-----chhhHHHHHHHHH--hcC--ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018882 193 YMQKYHYSW-----TIVTYNIVIDAFG--RAG--DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263 (349)
Q Consensus 193 ~~~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 263 (349)
.|.+.. | +..+...++.++. ..| ++.+|..+|+++.+. .|+..+-..++.++...|++++|...++.
T Consensus 161 ~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 998764 4 3555566665533 233 889999999998654 35433334444478889999999999987
Q ss_pred HhhCC---------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 264 IDNSD---------IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 264 ~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+.+.. -+-++.+...+|......|+ +|.++++++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 65531 02367777556666666676 788889988886
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=2e-09 Score=84.99 Aligned_cols=79 Identities=10% Similarity=0.038 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+...++++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444443332 22333333444444445555555555554443321 1233344444444555555555555555544
Q ss_pred h
Q 018882 161 S 161 (349)
Q Consensus 161 ~ 161 (349)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=5e-10 Score=88.17 Aligned_cols=187 Identities=6% Similarity=-0.031 Sum_probs=117.6
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCchH
Q 018882 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTV 99 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 99 (349)
.+...+..+...+.+.|++++|+..|+++.... +.+ ...+..+..++.+.|++++|...|++..+... +....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456777788888899999999999999998763 223 56788888899999999999999999888632 12245
Q ss_pred HHHHHHHHHhc--------cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018882 100 TYNTLIDAYGR--------AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF 171 (349)
Q Consensus 100 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (349)
.+..+..++.. .|++++|...|+++.+.. +.+......... +..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 66777788877 899999999999888763 112222211100 0000000 01113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q 018882 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRA----------GDLKQMEYLFRLMRSE 232 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 232 (349)
..+...|.+.|++++|...|+.+.+..+.. ....+..+..++... |++++|...++.+.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 445555666666666666666665543211 233455555555544 5666666666666543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=5.6e-10 Score=89.39 Aligned_cols=165 Identities=10% Similarity=-0.075 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccCC---Cc--chhh
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQ----GIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC---EP--DVWT 135 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~ 135 (349)
|......+...|++++|...|.+.... |-+++ ..+|+.+..+|...|++++|+..+++..+... .+ -..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444445555555444444332 11111 23444444445455555555554444433210 00 0223
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch------
Q 018882 136 MNCTLRAFGNS-GQIDTMEKCYEKFQSAGIQP-S----INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI------ 203 (349)
Q Consensus 136 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 203 (349)
++.+..+|... |++++|...|++..+..... + ..++..+...+.+.|++++|...|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44444444443 55555555554444321000 0 123444444444555555555555444443221111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
..|..+..++...|++++|...+++..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 023334444444455555555554443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=4.4e-10 Score=88.45 Aligned_cols=186 Identities=9% Similarity=-0.048 Sum_probs=119.7
Q ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc---hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCCHHHH
Q 018882 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD---VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI--QPSINTF 171 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 171 (349)
+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|...|+++.+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566667777777888888888888877653 222 45666777777788888888888888777532 1123455
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018882 172 NILLDSYGK--------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 172 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
..+..++.. .|++++|...|+++.+..+. +......+... ..+.. .....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHH----HHHHHHHH
Confidence 666666766 77777777777777765422 22222221110 00000 00112456
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRL----------KCFAEMKGVLEVMQQR 302 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 302 (349)
+...+...|++++|...++.+.+..+.. ....+..+..+|... |++++|...|+.+.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6778888899999999998887653321 345677778888766 8889999999988876
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=6.3e-10 Score=84.29 Aligned_cols=133 Identities=10% Similarity=-0.023 Sum_probs=89.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018882 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG 252 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (349)
.+..++.+.|++++|...|++..+..+. +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3777788888888888888888776543 67778888888888888888888888887654 445667777777765554
Q ss_pred C--hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018882 253 K--PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTY 311 (349)
Q Consensus 253 ~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 311 (349)
+ .+.+...++.+.. ..|....+.....++...|++++|...|++..+. .|+....
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 3 3334444444432 2333334445566677788888888888888865 5665433
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=4.5e-10 Score=78.38 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=66.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 34455555555666666666666555432 3344555555555555566666666665555442 22344455555555
Q ss_pred hccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018882 109 GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+.++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555554432 22333444444455555555555555554443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.26 E-value=8.6e-10 Score=76.91 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 018882 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA 251 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (349)
..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.... +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 33444444444555555544444433221 33444444444444444444444444444332 22333444444444444
Q ss_pred CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
|++++|...++.+.+... .+...+..+...+...|++++|...++++..
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 444444444444443321 1333444444444555555555555544443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=3.8e-10 Score=101.10 Aligned_cols=174 Identities=9% Similarity=-0.063 Sum_probs=144.3
Q ss_pred hccCcHHHHHHHHHHHh--------ccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 109 GRAKMFAEMELTLVKML--------SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (349)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 332 4456778888899999999999999999998874 4477889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018882 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
.|++++|...|++..+.... +...|..+..++.+.|++++ ...|++..+.. +.+...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887644 67888999999999999999 99999988765 45678899999999999999999999
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
++.+.+... -+...+..+..++...++
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 999887653 256777778888766554
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=4.2e-10 Score=100.86 Aligned_cols=173 Identities=9% Similarity=-0.113 Sum_probs=145.2
Q ss_pred HccCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 144 GNSGQIDTMEKCYEKFQ--------SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...|++++|.+.+++.. +.. +.+...+..+...+...|++++|...++++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999988 432 446778888999999999999999999999887644 78899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 018882 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...++.+.+.+. .+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998765 4466888999999999999999 999999988764 3678899999999999999999999
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHHhcCc
Q 018882 296 LEVMQQRGCKPD-KVTYRTMVRAYSTNGM 323 (349)
Q Consensus 296 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 323 (349)
|++..+. .|+ ...+..+..++...|.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988876 444 5677777777766555
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.22 E-value=1.8e-09 Score=81.78 Aligned_cols=187 Identities=9% Similarity=-0.010 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
..+......+...|++++|...|++..+. .|+ ...|... . . .............+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~--~---~--------------~~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT--N---V--------------DKNSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH--H---S--------------CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh--h---h--------------cchhhhhHHHHHHHHHH
Confidence 33444455666777777777777777765 232 2222210 0 0 00001112223447778
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC--hH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD--LK 220 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 220 (349)
+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 888899999999998888874 446778888888888999999999999888887644 67778888777765543 33
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHH
Q 018882 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
.+...++.... ..|....+.....++...|++++|...|++..+.. |+.....
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~ 194 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQK 194 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHH
Confidence 44555555432 23333344445666677888999999999888754 5544433
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=4e-09 Score=80.09 Aligned_cols=176 Identities=10% Similarity=0.010 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 018882 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF----AFDKVQAL 85 (349)
Q Consensus 10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 85 (349)
+|++.|++..+.| ++.++..+...+...+++++|++.|++..+. -+...+..+...+.. + ++++|..+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4566666666654 5666667777777777777777777776654 245556666666655 5 67777777
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHc----cCCHHHHHHHH
Q 018882 86 LSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCE-PDVWTMNCTLRAFGN----SGQIDTMEKCY 156 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 156 (349)
|++..+.| +...+..|...|.. .+++++|...|++..+.+.. .....+..+...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77776654 45556666666655 56677777777776665421 124455555555555 55666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGKA-G-----HFEKMSAVMEYMQKYH 198 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 198 (349)
++..+. ..+...+..|...|... | +.++|...|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666554 12333444555555432 2 5666666666665554
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=4.3e-08 Score=78.10 Aligned_cols=221 Identities=9% Similarity=-0.040 Sum_probs=112.0
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCchHHHHHHHHHH----hcc---C
Q 018882 42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF--AFDKVQALLSDMSTQGIRPNTVTYNTLIDAY----GRA---K 112 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 112 (349)
..++|+++++.+.... +.+..+|+.--.++...+ ++++++++++.+..... -+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 3356777777776653 345556666666666666 67777777776666532 2444444332222 222 3
Q ss_pred cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
++++++.+++++.+.. +-+...|+.-.-++.+.|.++ .+++++.++
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~---------------------------------~~~EL~~~~ 170 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN---------------------------------DAKELSFVD 170 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT---------------------------------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC---------------------------------hHHHHHHHH
Confidence 4455555555554433 233344444443444444444 004444444
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCC------hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh-HHHHHHHHh
Q 018882 193 YMQKYHYSWTIVTYNIVIDAFGRAGD------LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK-LGSVLRFID 265 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 265 (349)
++.+.++. +...|+.-...+...+. ++++++.+..+.... +-|...|+.+...+.+.|+... +..+...+.
T Consensus 171 ~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 171 KVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44444333 44444444333333333 555555555555443 3455555555555555555332 334444443
Q ss_pred hCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 266 NSD--IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 266 ~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
+.+ -..++..+..+...|.+.|+.++|.++++.+.+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 322 123555666666666666666777777766664
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=1.1e-07 Score=75.78 Aligned_cols=219 Identities=6% Similarity=-0.090 Sum_probs=154.0
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---CCHHH
Q 018882 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG--QIDTMEKCYEKFQSAGIQPSINTFNILLDSY----GKA---GHFEK 186 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~ 186 (349)
+|+..++.++... +-+...|+.--.++...+ ++++++++++.+.... +-+..+|+.--..+ ... +++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4444444444332 222333444444444444 5666666666666553 22444444333333 333 67889
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC------hhhHH
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLK--QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK------PEKLG 258 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~ 258 (349)
++.+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++++..+.+.. +-|...|+.-...+...++ ++++.
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 99999999887655 7888888877788888888 9999999999876 5677888877777777776 88999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQRG--CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
+.++.+....+ -|...|+.+...+.+.|+... +..+..++...+ -..+...+..+..+|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999888765 488999999999988888544 556776665543 13377889999999999999999999999987
Q ss_pred H-Hhh
Q 018882 336 K-MDE 339 (349)
Q Consensus 336 ~-~~~ 339 (349)
+ .++
T Consensus 286 ~~~Dp 290 (306)
T 3dra_A 286 SKYNP 290 (306)
T ss_dssp HTTCG
T ss_pred hccCh
Confidence 6 454
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.19 E-value=7.4e-10 Score=79.10 Aligned_cols=142 Identities=5% Similarity=-0.106 Sum_probs=71.1
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+...|++++|+..++...... +.+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3444555666666665555432 2223344455555666666666666666655543 2245555555566666666666
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYL-FRLMRSERIKPSCVTLCSLVRAYGHAG 252 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (349)
|...|++..+..+. +...|..+...+.+.|++++|... ++...+.. +-++.+|......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666555554422 455555555555555555443332 34444332 223344444434333333
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=1.6e-10 Score=82.66 Aligned_cols=120 Identities=8% Similarity=-0.077 Sum_probs=58.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018882 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 82 (349)
...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHH
Confidence 34455555555555544321 1123344445555555555555555555555442 33445555555555555555555
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH-HHHHhc
Q 018882 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT-LVKMLS 126 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~ 126 (349)
...|++..+.. +-+...+..+...|.+.|++++|.+. +++..+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555542 12344555555555555555443332 344443
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=1.1e-08 Score=77.74 Aligned_cols=106 Identities=10% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC----cHHHHHHHH
Q 018882 46 AFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK----MFAEMELTL 121 (349)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 121 (349)
|++.|++..+. -+..++..+...+...+++++|..+|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 44444444443 244444445555555555555555555555443 33444444444444 3 455555555
Q ss_pred HHHhccCCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Q 018882 122 VKMLSEDCEPDVWTMNCTLRAFGN----SGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 162 (349)
++..+.+ +...+..+...|.. .+++++|.++|++..+.
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 5544332 22233334444433 44444444444444443
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=4.1e-09 Score=84.06 Aligned_cols=166 Identities=6% Similarity=-0.109 Sum_probs=119.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH-HHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT-LCS 243 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 243 (349)
+.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++.+.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 445566677777788888888888888888776543 66778888888888888888888888776543 33332 222
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcC
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNG 322 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 322 (349)
....+...++.+.|...++......+ .+...+..+...+...|++++|...|+++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33345666777778888888776653 367778888888888888888888888888764321 2567788888888888
Q ss_pred chhhhHHHHHHH
Q 018882 323 MKNHAKEFQDLV 334 (349)
Q Consensus 323 ~~~~a~~~~~~~ 334 (349)
+.+.|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 888887776654
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=1.2e-09 Score=96.04 Aligned_cols=154 Identities=10% Similarity=-0.057 Sum_probs=116.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.|++++|++.|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 578999999999988763 4467889999999999999999999999998874 5567889999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc---CCHHHHHHHHHHHHh
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS---GQIDTMEKCYEKFQS 161 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 161 (349)
.+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998874 3467788899999999999999999999988765 44567788888888888 999999999999888
Q ss_pred cC
Q 018882 162 AG 163 (349)
Q Consensus 162 ~~ 163 (349)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 75
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=2.3e-09 Score=85.57 Aligned_cols=167 Identities=9% Similarity=-0.022 Sum_probs=119.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhH-HH
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTM-NC 138 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 138 (349)
+.+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3445566677777788888888888888887763 3366677778888888888888888888876653 333322 22
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAG 217 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 217 (349)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2233556677777888888877764 4467778888888888888888888888887765331 2667888888888888
Q ss_pred ChHHHHHHHHHHH
Q 018882 218 DLKQMEYLFRLMR 230 (349)
Q Consensus 218 ~~~~a~~~~~~~~ 230 (349)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888777654
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=1.3e-09 Score=80.19 Aligned_cols=75 Identities=13% Similarity=-0.060 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchhhhHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
|...++...+..+ -+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...++
T Consensus 93 a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 93 ELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3444444443321 134444444444555555555555555444432211 12344444444444555544444444
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=1.2e-08 Score=78.35 Aligned_cols=186 Identities=13% Similarity=0.062 Sum_probs=114.8
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch---HHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT---VTYN 102 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 102 (349)
...+..+...+.+.|++++|+..|+++....+..|. ...+..+..++.+.|++++|...|+++.+.... +. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence 445556666777788888888888887765211121 346667777788888888888888887765321 11 1333
Q ss_pred HHHHHHh------------------ccCcHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018882 103 TLIDAYG------------------RAKMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 103 ~l~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
.+..++. ..|++++|...|+++.+.. |+. ..+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 3444443 3567777777777777552 322 221111100 00000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
.....+...+.+.|++++|...|+.+.+..+.. ....+..+..++.+.|++++|...++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112345677888999999999999888765331 13567888888999999999999999887654
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=2.2e-09 Score=78.94 Aligned_cols=164 Identities=9% Similarity=0.003 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH-
Q 018882 134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA- 212 (349)
Q Consensus 134 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 212 (349)
..+......+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+ +...+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 346667788899999999999999987764 44778899999999999999999999999876543 44433332222
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 291 (349)
+...++...|...++...+.. +.+...+..+...+...|++++|...++.+.+..+.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 223233445788888887754 4467889999999999999999999999998876543 46688899999999999999
Q ss_pred HHHHHHHHHh
Q 018882 292 MKGVLEVMQQ 301 (349)
Q Consensus 292 a~~~~~~m~~ 301 (349)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=2.3e-09 Score=86.54 Aligned_cols=200 Identities=8% Similarity=-0.046 Sum_probs=121.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 83 (349)
..|++++|.+++++..+.. +.. + +...++++.|...|.+. ...+...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 3577888998888877642 111 0 11146777777777654 34566778888888
Q ss_pred HHHHHHHhc----CCCC-chHHHHHHHHHHhccCcHHHHHHHHHHHhccC---CCc--chhhHHHHHHHHHccCCHHHHH
Q 018882 84 ALLSDMSTQ----GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---CEP--DVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 84 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
..+.+.... +-.+ -..+|+.+..+|...|++++|...+++..+.. -.+ ...++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 877776543 1110 13466677777777788777777777665321 011 13456666666766 7777777
Q ss_pred HHHHHHHhcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCc-hhhHHHHHHHHHhcCChHHHH
Q 018882 154 KCYEKFQSAGIQ---P--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSWT-IVTYNIVIDAFGRAGDLKQME 223 (349)
Q Consensus 154 ~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~ 223 (349)
..|++..+.... + ...++..+...+.+.|++++|+..|++..... ..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777776543110 0 13456666777777777777777777665431 1111 124555555666667777777
Q ss_pred HHHHHHH
Q 018882 224 YLFRLMR 230 (349)
Q Consensus 224 ~~~~~~~ 230 (349)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777765
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=1.9e-08 Score=77.08 Aligned_cols=207 Identities=8% Similarity=-0.021 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCC-c-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH--HHHHH
Q 018882 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE-P-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI--NTFNI 173 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 173 (349)
...+..+...+...|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344455556666677777777777776654211 1 1234555666667777777777777776665321111 12333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcC
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC-VTLCSLVRAYGHAG 252 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 252 (349)
+..++...+.. . ...|..+...+...|++++|...|+.+.+.. |+. .........
T Consensus 84 ~g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----- 139 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH-----
T ss_pred HHHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH-----
Confidence 33333332110 0 0011122222334566777777777766542 222 111111000
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCchhhhHHH
Q 018882 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
..+...+ ......+...|.+.|++++|...|+++.+..... ....+..+..++.+.|++++|.+.
T Consensus 140 -----~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 140 -----VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0000000 0111235566777777777777777777652211 124566677777777777777777
Q ss_pred HHHHHHHhhhh
Q 018882 331 QDLVEKMDETC 341 (349)
Q Consensus 331 ~~~~~~~~~~~ 341 (349)
++.+....+..
T Consensus 207 ~~~l~~~~~~~ 217 (225)
T 2yhc_A 207 AKIIAANSSNT 217 (225)
T ss_dssp HHHHHHCCSCC
T ss_pred HHHHHhhCCCc
Confidence 77666555443
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=1.9e-07 Score=80.09 Aligned_cols=175 Identities=10% Similarity=-0.051 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHH--------------------
Q 018882 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV-------------------- 209 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------------- 209 (349)
+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...|...
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 34566777777653 446777888888888889999999999988877 2233222211
Q ss_pred --------------------HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-cCChhhHHHHHHHHhhCC
Q 018882 210 --------------------IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH-AGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 210 --------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~ 268 (349)
+....+.++.+.|..+|..+ ... ..+...|......-.. .++++.|..+|+...+..
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 11111234455555555555 211 1222233211111111 224566666666555432
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
. -++..+...+....+.|+.+.|..+|+++. .....|...+.--...|+.+.+..++++..
T Consensus 351 ~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 351 P-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 123344445555555566666666666542 134555555554455566666666555444
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=3.8e-09 Score=85.25 Aligned_cols=159 Identities=8% Similarity=-0.037 Sum_probs=70.2
Q ss_pred HHHhccCcHHHHHHHHHHHhccCC---C--cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDC---E--PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI---QP--SINTFNILL 175 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 175 (349)
..|...|++++|...+.+...... . .-..+|+.+..+|...|++++|...+++..+.-. .+ ...++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666555443210 0 0123445555555555556665555555443210 01 123344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCc-HHHHHHHH
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSW-----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKPS-CVTLCSLV 245 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~ 245 (349)
..|.. |++++|+..|++..+..... ...++..+...+...|++++|...+++..+. +..+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 44544 55555555555443321100 0234444455555555555555555544331 11111 11333334
Q ss_pred HHHHhcCChhhHHHHHHHHh
Q 018882 246 RAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~ 265 (349)
.++...|++++|...++...
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444455555555555444
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=3.8e-07 Score=78.28 Aligned_cols=305 Identities=9% Similarity=-0.023 Sum_probs=169.9
Q ss_pred CC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHH
Q 018882 5 CK-QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA-FDKV 82 (349)
Q Consensus 5 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a 82 (349)
.| +++.|..+|+.+.+. -|. |+++.+..+|++.... .|+...|...+....+.++ .+.+
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CT
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHH
Confidence 45 367777777777654 232 6788888888887765 4677777777776666653 3456
Q ss_pred HHHHHHHHhc-CC-CCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccCCCcchhhHHHHHHHH-------------
Q 018882 83 QALLSDMSTQ-GI-RPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF------------- 143 (349)
Q Consensus 83 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------- 143 (349)
..+|+..... |. ..+...|...+..+.. .++.+.+.++|++.+......-...|......-
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 6677766654 42 2355677766665542 356777778888777632111111222111100
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG--H-----FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
...+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++....+ .+...|...+..+.+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHc
Confidence 012344555555555443211123445655555432211 0 2445677777776543 3577777777777788
Q ss_pred CChHHHHHHHHHHHhCCCCCc----------------------------------------HHHHHHHHHHHHhcCChhh
Q 018882 217 GDLKQMEYLFRLMRSERIKPS----------------------------------------CVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~----------------------------------------~~~~~~l~~~~~~~~~~~~ 256 (349)
|+.+.|..++++.... +.+ ...|...+....+.++.+.
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 8888888777766543 111 1234455555556677888
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK-CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
|..+|+.+ ... ..+...|-.....-...+ +.+.|..+|+...+.. +-++..|...+.-..+.|+.+.|+.+++.+
T Consensus 305 AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 305 FRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888877 321 123344433222222223 5788888888877752 113445566666667777777777666553
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.13 E-value=2.4e-09 Score=94.23 Aligned_cols=155 Identities=9% Similarity=-0.047 Sum_probs=120.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 018882 146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYL 225 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 225 (349)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 346788999999999999999999999999887643 688999999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 018882 226 FRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL---KCFAEMKGVLEVMQQR 302 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 302 (349)
+++..+.. +.+...+..+..++...|++++|...++...+... .+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998765 45678899999999999999999999999987654 3678888999999999 9999999999999887
Q ss_pred CC
Q 018882 303 GC 304 (349)
Q Consensus 303 ~~ 304 (349)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.03 E-value=2.5e-07 Score=73.96 Aligned_cols=166 Identities=8% Similarity=-0.102 Sum_probs=106.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCch----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-Cc----HHHHHH
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKYHY-SWTI----VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PS----CVTLCS 243 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 243 (349)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++.+...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777788888887777765321 1221 12334555666667788888888777663211 22 225777
Q ss_pred HHHHHHhcCChhhHHHHHHHHhh----C-CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHH
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDN----S-DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD-KVTYR 312 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~ 312 (349)
+...|...|++++|...++.+.+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77788888888888888877653 1 1112 2346777888888888888888888776643 22222 56777
Q ss_pred HHHHHHHhcCc-hhhhHHHHHHHHHHhh
Q 018882 313 TMVRAYSTNGM-KNHAKEFQDLVEKMDE 339 (349)
Q Consensus 313 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~ 339 (349)
.+..+|.+.|+ +++|.+.+++..++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 78888888884 5888887777766543
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=9.1e-07 Score=71.33 Aligned_cols=249 Identities=6% Similarity=-0.013 Sum_probs=143.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 018882 31 TALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG 109 (349)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (349)
+.+-......+..++|+++++.+.... +.+..+|+..-.++...+ .+++++.+++.+.... +-+..+|+.-..++.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 333333444555678889888888763 556677888777777777 5888888888888774 336667776655555
Q ss_pred cc-C-cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018882 110 RA-K-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID--------TMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 110 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
.. + ++++++++++++.+.. +.+...|+.-.-++.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55 5 7788888888888765 445556655554444444444 6777777777664 336666666666665
Q ss_pred hcCC-------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH--HHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 180 KAGH-------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ--MEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 180 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+.++ ++++++.+++.....+. |...|+-+-..+.+.|+... ...++ ...+...+ ...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~~~--------- 278 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-PDI--------- 278 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-----------------
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccc---cccccccc-ccc---------
Confidence 5554 45666666666655433 55666555554444443200 00000 00000000 000
Q ss_pred cCChhhHHHHHHHHhhCC-----CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 251 AGKPEKLGSVLRFIDNSD-----IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.....+...+.... -.+++..+..++..|...|+.++|.++++.+.+.
T Consensus 279 ----~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 279 ----ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11111111111111 1356777778888888888888888888887644
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=4.7e-08 Score=78.21 Aligned_cols=209 Identities=7% Similarity=0.009 Sum_probs=146.6
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHH
Q 018882 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN---TYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~ 89 (349)
..+..+......|+..+...+...+.-.- + .++..-. ..+.. .+...+..+...|++++|..++++.
T Consensus 32 ~~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 32 SEVSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYEVLI-----YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHHTTT-----SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhCCCC-----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555655445688888888877765332 1 2222211 22233 2334467788999999999999998
Q ss_pred HhcC-CCCch----HHHHHHHHHHhccCcHHHHHHHHHHHhccCCC-cc----hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018882 90 STQG-IRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE-PD----VWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 90 ~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
.+.. ..|+. ..+..+...+...+++++|+..+++....... ++ ..+++.+..+|...|++++|...++++
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8753 22332 23445777888888999999999999874322 22 236888999999999999999999998
Q ss_pred Hh----c-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-chhhHHHHHHHHHhcCC-hHHHHHHHH
Q 018882 160 QS----A-GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSW-TIVTYNIVIDAFGRAGD-LKQMEYLFR 227 (349)
Q Consensus 160 ~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~ 227 (349)
.+ . +..+ ...++..+...|.+.|++++|...+++..+.. ..+ -..+|..+..++...|+ +++|...++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 74 1 1122 23478889999999999999999998876432 111 26788899999999995 699999988
Q ss_pred HHHh
Q 018882 228 LMRS 231 (349)
Q Consensus 228 ~~~~ 231 (349)
+...
T Consensus 262 ~Al~ 265 (293)
T 3u3w_A 262 KASF 265 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=7.4e-08 Score=73.02 Aligned_cols=127 Identities=7% Similarity=-0.055 Sum_probs=80.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 4445556667777777777776653 44666777777777777777777777777666542 256666777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCcH----------------HHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 216 AGDLKQMEYLFRLMRSERIKPSC----------------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
.|++++|...++...+.. +.+. ..+..+..++...|++++|...++.+.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777766543 1111 445555566666666666666666655543
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=1.1e-07 Score=72.17 Aligned_cols=130 Identities=7% Similarity=-0.055 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018882 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (349)
..+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566777788888888888888774 5567788888888888888888888888888764 44677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------------chhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 179 GKAGHFEKMSAVMEYMQKYHYSW---------------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
...|++++|...|+...+..... ....+..+..++...|++++|...++...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888888887754321 12677788888888888888888888887654
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.96 E-value=1.6e-06 Score=69.97 Aligned_cols=240 Identities=7% Similarity=-0.057 Sum_probs=138.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC-cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc-C-CHH
Q 018882 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS-G-QID 150 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 150 (349)
.+.+..++|+++++.++... +-+..+|+.--.++...+ .+++++..++.+.... +-+..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34445567888888888774 225566666666666666 4888888888888665 44556666665555555 5 677
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC----
Q 018882 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE--------KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD---- 218 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 218 (349)
+++++++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.+.++. |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 8888888887764 336666665555555555444 677777777666544 66667766666666554
Q ss_pred ---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 018882 219 ---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK--LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 219 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
++++++.+.++.... +-|...|+.+-..+.+.|+... ...++ ...+...+. . .....
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~~-~-------------~~~~~ 282 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLNP-D-------------IETVE 282 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-------------------------
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccc---ccccccccc-c-------------chhHH
Confidence 455566665555443 3444555544444444443210 00000 000100000 0 01122
Q ss_pred HHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 294 GVLEVMQQRG-----CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 294 ~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
....++...+ -.++...+..++..|...|+.++|.++++.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2222222211 13578888999999999999999999999885
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.94 E-value=9.9e-07 Score=70.48 Aligned_cols=59 Identities=5% Similarity=-0.172 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCchhhh-HHHHHH
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CKP-DKVTYRTMVRAYSTNGMKNHA-KEFQDL 333 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 333 (349)
++..+...|...|++++|...+++..+.. ... -..+|..+..+|.+.|++++| ...++.
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444444555555555555544443221 000 133444444445555555554 343443
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.94 E-value=6.6e-07 Score=71.52 Aligned_cols=167 Identities=7% Similarity=-0.062 Sum_probs=113.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCc--hh
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS-----INTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---SWT--IV 204 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 204 (349)
.+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556667777888888887777666432211 12233455566777888888888887764321 111 44
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh---C-CCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC----C-CchH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRS---E-RIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD----I-MLDT 273 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~ 273 (349)
+++.+...|...|++++|...+++..+ . +..+ ...++..+...|...|++++|...++...+.. . ..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888888888999998888888762 1 1111 12577888888999999999999888765431 1 1126
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 018882 274 VFFNCLVDAYGRLKCFAEM-KGVLEVMQQ 301 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 301 (349)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 776776553
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=8.7e-08 Score=69.33 Aligned_cols=133 Identities=8% Similarity=-0.112 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++...+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 344555555566666666666666655443 33455566666666666666666666666655432 2455666666777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 284 GRLKCFAEMKGVLEVMQQRGCKPDKVTYRT--MVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
...|++++|...+++....... +...+.. ....+...|++++|.+.++....+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 7777777777777776665321 3333422 33335666777777777766655543
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=3.9e-08 Score=73.90 Aligned_cols=158 Identities=13% Similarity=-0.030 Sum_probs=100.9
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCchhhHHHHHHHHHhcCC
Q 018882 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----H-YSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~ 218 (349)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... + .......+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855554432 2235667777888888888888888888776552 1 11234567777777888888
Q ss_pred hHHHHHHHHHHHhC----CCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-chHHHHHHHHHHHHhcC
Q 018882 219 LKQMEYLFRLMRSE----RIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIM-LDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 219 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g 287 (349)
+++|...+++..+. +-.+ ....+..+...+...|++++|...++..... +.. ....++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888776542 2111 2345667777777888888888887776532 211 11234566777778888
Q ss_pred CHHHHHHHHHHHHhc
Q 018882 288 CFAEMKGVLEVMQQR 302 (349)
Q Consensus 288 ~~~~a~~~~~~m~~~ 302 (349)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888777766543
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=1.8e-08 Score=74.08 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH-HHhcCCh-
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS-CLKAFAF- 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~- 79 (349)
+...|++++|+..++...+.. +.+...|..+..++...|++++|...|++..... +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 345677788888888777663 4466777778888888888888888888777653 3456666677776 6677777
Q ss_pred -hHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccC
Q 018882 80 -DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 80 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
++|...+++..+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888777763 2356667777777778888888888887777653
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=1.4e-07 Score=68.22 Aligned_cols=129 Identities=12% Similarity=-0.091 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (349)
..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34555666666777777777777776665432 56666677777777777777777777766543 34556677777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCchHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFF--NCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
...|++++|...++.+.+.... +...+ ...+..+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777665432 33333 333334666777888877776654
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.89 E-value=2.9e-08 Score=78.89 Aligned_cols=194 Identities=10% Similarity=-0.052 Sum_probs=118.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+...|++++|+..|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45677778888888888888888888887753 4467788888888888888888888888887763 33667778888
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
.++...|++++|...|++..+.. |+. ..+...+....+ ..... -+........+.+......+.. + ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 88888888888888888877542 211 111111111111 11111 1222223333444444333322 2 25777
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 018882 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-GDLKQMEYLFRLMRS 231 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 231 (349)
++|.+.++...+... .+......+...+.+. +.++++.++|..+.+
T Consensus 152 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777776665432 1333333333334333 556777777776654
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.88 E-value=2.7e-08 Score=74.74 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=59.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcC---CCC-CCCHHHHHHHHHHHHhcCCh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT---PDC-QPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~ll~~~~~~~~~ 79 (349)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... .+. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 1123455666666666666666666666655441 000 11234455555566666666
Q ss_pred hHHHHHHHHHHhc----CCCC--chHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 80 DKVQALLSDMSTQ----GIRP--NTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 80 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
++|...+++.... +..+ ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666665554432 1011 12334445555555555555555555543
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=5.8e-08 Score=77.10 Aligned_cols=194 Identities=8% Similarity=-0.016 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018882 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
...+..+...+...|++++|...|++..... +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555566666666666666655543 2344555556666666666666666666665543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
+...|++++|...|++..+.... +...+...+....+. ..+. -+........+.+......+ ..+ ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 66667777776666665543211 111111111111110 1111 11112222223333333333 222 25667777
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQ 301 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 301 (349)
.+.++...+... .+......+...+.+. +.+++|.++|....+
T Consensus 155 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777766665432 2333444444444444 556777777776654
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=1.3e-07 Score=65.09 Aligned_cols=25 Identities=4% Similarity=0.017 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
|..+..+|...|++++|.+.|++..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=3.5e-08 Score=76.89 Aligned_cols=186 Identities=7% Similarity=-0.061 Sum_probs=97.4
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhcCCCCc---------------
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSIL-------IKSCLKAFAFDKVQALLSDMSTQGIRPN--------------- 97 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 97 (349)
.++...|.+.|.++.... +-....|..+ ...+.+.++..++...+..-.. +.|+
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 455666666666665542 3344555555 3445555444555444444333 1111
Q ss_pred -------hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--H
Q 018882 98 -------TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS--I 168 (349)
Q Consensus 98 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 168 (349)
......+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122334455566666666666666665443 322244444445666666666666665443321 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345556666666666666666666665332213 2234455555666666667777776666654
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=1.4e-07 Score=64.89 Aligned_cols=60 Identities=7% Similarity=-0.024 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
..|..+..++.+.|++++|+..+++..+.+.. +...|..+..++...|++++|...|+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333333333333333333333333333211 2333333333333334444444433333
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=1.1e-07 Score=65.87 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=58.3
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34556666666666666666666666665542 3355556666666666666666666666665542 22445555555
Q ss_pred HHHhccCcHHHHHHHHHHHhcc
Q 018882 106 DAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.++...|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 6666666666666666655544
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=1.1e-07 Score=67.54 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+.+.|++++|...|+.+.... +.+...|..+..++...|++++|...|+.+.+..+ .++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHH
Confidence 344444455555555555555555555443 33445555555555555555555555555554432 2344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 018882 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~ 302 (349)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555554
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=2.2e-07 Score=63.46 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=4.3
Q ss_pred hcCChHHHHHHH
Q 018882 215 RAGDLKQMEYLF 226 (349)
Q Consensus 215 ~~~~~~~a~~~~ 226 (349)
..|++++|...+
T Consensus 89 ~~~~~~~A~~~~ 100 (125)
T 1na0_A 89 KQGDYDEAIEYY 100 (125)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhcCHHHHHHHH
Confidence 333333333333
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=2.3e-07 Score=64.28 Aligned_cols=60 Identities=7% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHh
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444444444444443331 1123333333333333444444444443333
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=3.1e-07 Score=62.63 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (349)
.+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..+++.+.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 344444444455555555555544444321 134444444455555555555555555544332 223444445555555
Q ss_pred hcCChhhHHHHHHHHhhC
Q 018882 250 HAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~ 267 (349)
..|++++|...++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555554443
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=2.4e-07 Score=63.88 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=34.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 018882 138 CTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (349)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.... +...+..+...+...|
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhC
Confidence 33333334444444444444433331 113333333444444444444444444443333211 2333333333444444
Q ss_pred ChHHHHHHHHHH
Q 018882 218 DLKQMEYLFRLM 229 (349)
Q Consensus 218 ~~~~a~~~~~~~ 229 (349)
++++|...++..
T Consensus 95 ~~~~A~~~~~~~ 106 (131)
T 2vyi_A 95 KHVEAVAYYKKA 106 (131)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=2.4e-07 Score=63.85 Aligned_cols=118 Identities=8% Similarity=-0.058 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++...+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3444455555555555666655555554432 23445555555556666666666666655554432 234555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 018882 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
+...|++++|...+++...... .+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655531 144555555555555544
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=1.3e-07 Score=67.21 Aligned_cols=99 Identities=8% Similarity=0.110 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
...+..+...+.+.|++++|...|+......+. +...|..+..++...|++++|...|++..+.. +.+...+..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 345556666666777777777777776665533 56666667777777777777777777766554 3345666666777
Q ss_pred HHhcCChhhHHHHHHHHhhCC
Q 018882 248 YGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~ 268 (349)
+...|++++|...|+...+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777766643
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=9.7e-08 Score=70.08 Aligned_cols=119 Identities=8% Similarity=0.006 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCCh--hhH
Q 018882 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA-YGHAGKP--EKL 257 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 257 (349)
.|++++|...++...+.... +...|..+...+...|++++|...++...+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34455555555554444322 44555555555555555555555555554432 2234445555555 4455555 666
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...++.+.+... .+...+..+...|...|++++|...|++..+.
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666555432 24455556666666666666666666666655
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.80 E-value=5.5e-07 Score=70.17 Aligned_cols=126 Identities=11% Similarity=0.002 Sum_probs=52.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhc
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRA 216 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 216 (349)
....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3344444555555555554444322 222133333334445555555555554332211 110 12344444445555
Q ss_pred CChHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018882 217 GDLKQMEYLFRLMRSERIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
|++++|+..|++.......| ..........++.+.|+.++|...|+.+...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555555444222112 1223333444444555555555555554443
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=8.9e-08 Score=67.99 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++.+....+ .++..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 34455555666666666666666666665543 34555666666666666666666666666665442 24555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 018882 282 AYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+|...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 667777777777766666654
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.79 E-value=2.6e-07 Score=75.36 Aligned_cols=132 Identities=8% Similarity=-0.131 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018882 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--------------IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...++...+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566677777777777777777777766543321 467777777788888888888888877765
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 018882 233 RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM-KGVLEVMQ 300 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 300 (349)
. +.+...+..+..++...|++++|...|+.+.+..+ .+...+..+..++.+.|++++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44667777777888888888888888887776543 3566777777777777777777 34555554
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=4.6e-08 Score=69.47 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=93.7
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018882 225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 304 (349)
.++.+.... +.+...+..+...+...|++++|...|+.+....+ .+...|..+..+|...|++++|...|++......
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344444332 33456777888899999999999999999988764 4788899999999999999999999999998743
Q ss_pred CCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 305 KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 305 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+...+..+..+|...|++++|.+.++...++.+.
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 26788889999999999999999999999887754
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.75 E-value=2.1e-05 Score=63.09 Aligned_cols=137 Identities=10% Similarity=0.005 Sum_probs=71.4
Q ss_pred hcCChh-HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc----------HHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018882 75 KAFAFD-KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM----------FAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 75 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
+.|.++ +|+.+.+.+.... +-+..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444 6777777777653 2233444443333322222 455666666665543 33445555555555
Q ss_pred HccC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 018882 144 GNSG--QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH-FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 144 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...+ .+++++.+++.+.+.. +-|..+|+.-...+...|. ++++++.++.+.+.++. |...|+.....+..
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 5555 3566666666666554 2355555555555555555 35666666666555543 55555555444433
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=5.2e-07 Score=73.59 Aligned_cols=150 Identities=10% Similarity=-0.094 Sum_probs=117.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHH
Q 018882 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--------------CVTLCSLVRA 247 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 247 (349)
+++++|...++......+ -+...+..+...+.+.|++++|...|++..+...... ...+..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 344445444443332221 1467788889999999999999999999987642221 4789999999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhh
Q 018882 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 327 (349)
+...|++++|...++.+.+... .+...|..+..+|...|++++|...|++..+... -+...+..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764 4788999999999999999999999999998743 2677888899999999999888
Q ss_pred HH-HHHHH
Q 018882 328 KE-FQDLV 334 (349)
Q Consensus 328 ~~-~~~~~ 334 (349)
.+ .++.+
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33 44433
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=5.8e-07 Score=59.98 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--chHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRP--NTVTYNT 103 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 103 (349)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 45667777778888888888888888877653 4566777777788888888888888888877763 23 4667777
Q ss_pred HHHHHhcc-CcHHHHHHHHHHHhccC
Q 018882 104 LIDAYGRA-KMFAEMELTLVKMLSED 128 (349)
Q Consensus 104 l~~~~~~~-~~~~~a~~~~~~~~~~~ 128 (349)
+..++... |++++|.+.+++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77888888 88888888888877654
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=9.9e-07 Score=60.53 Aligned_cols=97 Identities=8% Similarity=-0.099 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+... .+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 344445555555555555555555555433 33445555555556666666666666655555432 2445555566666
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 018882 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~m~~~ 302 (349)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666655544
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.1e-06 Score=60.26 Aligned_cols=94 Identities=7% Similarity=-0.116 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|...++...+.. +.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333444444444444444444444443322 34444444444444555555555544444332 2233444444444555
Q ss_pred cCChhhHHHHHHHHhh
Q 018882 251 AGKPEKLGSVLRFIDN 266 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~ 266 (349)
.|++++|...++...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555544443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=1.3e-06 Score=58.85 Aligned_cols=98 Identities=13% Similarity=-0.020 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
+..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4456666677777777777777777776542 3456666677777777777777777777776653 234566666667
Q ss_pred HHhccCcHHHHHHHHHHHhcc
Q 018882 107 AYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~ 127 (349)
++...|++++|...+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 777777777777777776654
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=3.3e-06 Score=56.78 Aligned_cols=92 Identities=12% Similarity=0.044 Sum_probs=39.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHH
Confidence 333444444444444444444444332 223334444444444444444444444444433211 333444444444444
Q ss_pred CChHHHHHHHHHHH
Q 018882 217 GDLKQMEYLFRLMR 230 (349)
Q Consensus 217 ~~~~~a~~~~~~~~ 230 (349)
|++++|...++...
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.63 E-value=1e-06 Score=60.64 Aligned_cols=103 Identities=6% Similarity=-0.133 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--c----hHHHHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--L----DTVFFNC 278 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~~~ 278 (349)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++...+.... + -..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444555555555555555555554433 233445555555555555555555555554432100 0 0134555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT 310 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 310 (349)
+..++...|++++|++.|++.... .||+.+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 666666777777777777666654 344443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=4.8e-07 Score=63.67 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=49.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
.+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|+......+. ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 33444445555555555555555555443 224455555555555555555555555555554322 4445555555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 018882 215 RAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~ 231 (349)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=1.2e-07 Score=71.05 Aligned_cols=88 Identities=10% Similarity=-0.120 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018882 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 318 (349)
..+..+..++...|++++|...++...+... .+...+..+..+|...|++++|...|++...... -+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 4555666666666777777666666665432 3555666666667777777777777766665532 1445555555555
Q ss_pred HhcCchhhhH
Q 018882 319 STNGMKNHAK 328 (349)
Q Consensus 319 ~~~g~~~~a~ 328 (349)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.62 E-value=9.4e-07 Score=62.15 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=82.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++......+ .++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 45566677788889999999999999988765 45678888888999999999999999999887654 36677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 018882 282 AYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+|...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988776
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=6.8e-07 Score=61.51 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCc----hHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPN----TVT 100 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~ 100 (349)
..++..+...+.+.|++++|++.|++..+.. |.+...|..+..++...|++++|+..+++.++... .++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3456667777777788888888887777653 45566777777777777787777777777665411 111 124
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 101 YNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
|..+..++...|++++|++.|++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555556666666666666666666543
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=1.8e-06 Score=60.09 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=81.1
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018882 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
.+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...++...+... .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 357778888888888899999999888887664 44567888888888888999999888888877653 3677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 018882 281 DAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888889999998888888765
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.59 E-value=1.2e-06 Score=58.40 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=5.5
Q ss_pred HccCCHHHHHHHHHH
Q 018882 144 GNSGQIDTMEKCYEK 158 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~ 158 (349)
...|++++|...+++
T Consensus 17 ~~~~~~~~A~~~~~~ 31 (112)
T 2kck_A 17 YDAGNYTESIDLFEK 31 (112)
T ss_dssp HSSCCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHH
Confidence 333333333333333
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3.5e-06 Score=59.40 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=62.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 4555666666677777777777777777654 344 4556666666666777777777776666552 2245556
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHhcc
Q 018882 102 NTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
..+..++...|++++|...+++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666666654
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=1.7e-06 Score=64.63 Aligned_cols=129 Identities=11% Similarity=-0.067 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSW---------------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (349)
+..+...+...|++++|...|++........ ....+..+..++...|++++|...++...+.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 3444444455555555555555544432110 02566667777777777777777777776553 3
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 018882 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK-GVLEVMQQ 301 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~ 301 (349)
.+...+..+..++...|++++|...++...+... .+...+..+..++...++..++. ..+..|..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777777777777766543 25556666666666666665555 44444443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=2.6e-06 Score=59.30 Aligned_cols=101 Identities=10% Similarity=-0.102 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
+.+...+..+...+...|++++|...|+........ +...|..+..++...|++++|...++...+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 346777888888888899999999998888776543 67788888888888899999998888887754 4466788888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
..++...|++++|...++.+.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888889999998888887653
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=4.7e-06 Score=70.48 Aligned_cols=197 Identities=9% Similarity=-0.092 Sum_probs=133.2
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCc
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPD---------------VNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPN 97 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 97 (349)
...+.+.|++++|++.|..+.+......+ ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44567788888888888887765321111 123677888899999999999888876553 11112
Q ss_pred h----HHHHHHHHHHhccCcHHHHHHHHHHHhcc----CC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC----
Q 018882 98 T----VTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI---- 164 (349)
Q Consensus 98 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 164 (349)
. .+.+.+-..+...|+.+.+..+++..... +. ..-..++..+...+...|++++|..+++++...-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22333444555668888888888776542 11 22345677888889999999999999988765311
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC-c--hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 165 -QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH---YSW-T--IVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 165 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+....++..++..|...|++++|..++++..... ..| . ...+..+...+...+++++|...+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1124578888899999999999999998775421 111 1 2456666677778899999988777664
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2e-05 Score=66.58 Aligned_cols=197 Identities=8% Similarity=-0.067 Sum_probs=130.2
Q ss_pred HHHHhccCcHHHHHHHHHHHhccCCCcch----------------hhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCC
Q 018882 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDV----------------WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPS 167 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 167 (349)
...+...|++++|.+.|.++.+....... ..+..+...|...|++++|.+.+..+.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567789999999999988876422111 1366778888889999999888887665311 112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHhC--C---
Q 018882 168 IN----TFNILLDSYGKAGHFEKMSAVMEYMQKY----HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--R--- 233 (349)
Q Consensus 168 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--- 233 (349)
.. +.+.+-..+...|+.+.|..++...... +..+ -..++..+...+...|++++|..+++.+... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2222333344567888888888776432 2111 2456777888888889999988888877532 1
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
-+....++..++..|...|++++|...++..... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1122456777888888888988888888776532 21111 34566677777888888888887776654
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.57 E-value=1.2e-06 Score=60.28 Aligned_cols=110 Identities=5% Similarity=-0.024 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--ch----HHHHH
Q 018882 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LD----TVFFN 277 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 277 (349)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++.+...... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344445555555556666665555554433 234455555555566666666666666555443210 11 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.+...+...|++++|...|+...+. .|+......+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6677777777777777777777665 244444444433
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.57 E-value=2.5e-06 Score=61.56 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+... .+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34444444444444444444444444332 22334444444444444444444444444444332 13444444555555
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 018882 285 RLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 285 ~~g~~~~a~~~~~~m~~~ 302 (349)
..|++++|...|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 555555555555544443
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=1.4e-06 Score=62.95 Aligned_cols=103 Identities=13% Similarity=-0.053 Sum_probs=90.5
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018882 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 315 (349)
.+...+..+...+...|++++|...|+...+... .+...|..+..+|...|++++|...|++....... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4566788888999999999999999999988754 37889999999999999999999999999987532 688899999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 316 RAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+|...|++++|.+.++...++.+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998887654
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=8.6e-06 Score=57.31 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=26.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
.+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444444444332 11333444444444444444444444444443
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=0.00021 Score=57.36 Aligned_cols=184 Identities=7% Similarity=-0.033 Sum_probs=129.1
Q ss_pred hhhHHHHHHH---HHcCCChh-HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhc
Q 018882 27 TQSFTALLSA---YGRSGLFD-KAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA----------FDKVQALLSDMSTQ 92 (349)
Q Consensus 27 ~~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~ 92 (349)
+..|..+... ..+.|.+. +|+.+++.+.... |.+..+|+.--..+...+. +++++.+++.+...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 3445444433 34566655 8999999999874 4556667765555544433 57888899998887
Q ss_pred CCCCchHHHHHHHHHHhccC--cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhcCCCCCHH
Q 018882 93 GIRPNTVTYNTLIDAYGRAK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ-IDTMEKCYEKFQSAGIQPSIN 169 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 169 (349)
. +-+..+|+.-.-++...+ .+++++.+++++.+.. +-+...|+.-.-++...|. ++++++.++.+.+.. +-|..
T Consensus 104 ~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~S 180 (331)
T 3dss_A 104 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYS 180 (331)
T ss_dssp C-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHH
T ss_pred C-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHH
Confidence 4 447778887766676677 4899999999999876 5567777777777777887 589999999999876 44777
Q ss_pred HHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 170 TFNILLDSYGKA--------------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 170 ~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
.|+.....+... +.++++++.+.......+. |...|+-+--.+.+.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 887776666655 3467777777777766544 666776554444433
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.51 E-value=7e-07 Score=76.45 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=92.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 567899999999999998874 4568889999999999999999999999998874 5677888999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHH--HhccCcHHHHHHHHH
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLV 122 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 122 (349)
|.+.+++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988863 2244555555555 778899999999888
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=2.7e-06 Score=58.44 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=47.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cc----hhhHHH
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS--WT----IVTYNI 208 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 208 (349)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++........ ++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554442 224444555555555555555555555554433211 11 344445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+...+...|++++|...++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=3.8e-07 Score=61.78 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 4 KCKQPEKAHELFQAMVDEG--CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
..|++++|+..|++..+.+ -+.+..++..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 4688888888888888763 23346678888888888888888888888887763 4567778888888888888888
Q ss_pred HHHHHHHHHhc
Q 018882 82 VQALLSDMSTQ 92 (349)
Q Consensus 82 a~~~~~~~~~~ 92 (349)
|...+++....
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887765
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.48 E-value=2.1e-06 Score=58.47 Aligned_cols=97 Identities=7% Similarity=-0.122 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.. +-+...+..+..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~ 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345666777888888888888888887763 4577788888888888888888888888888764 2356677788888
Q ss_pred HhccCcHHHHHHHHHHHhcc
Q 018882 108 YGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 108 ~~~~~~~~~a~~~~~~~~~~ 127 (349)
+...|++++|...+++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888754
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=1.8e-06 Score=58.80 Aligned_cols=95 Identities=11% Similarity=-0.097 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
+..+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|...++...+..+. +...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3444455555666666666666655443 334555555555666666666666666655554322 44455555556666
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018882 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~m~~~ 302 (349)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666555543
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=6e-07 Score=76.85 Aligned_cols=120 Identities=13% Similarity=-0.092 Sum_probs=77.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
...+.+.|++++|...+++..+.... +...|..+..++.+.|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456677788888888777766433 56777777777777788888887777777654 34566777777777777777
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 018882 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDA--YGRLKCFAEMKGVLE 297 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 297 (349)
++|...++.+.+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777664322 33344444444 667777777777766
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=3.9e-06 Score=60.02 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WT----IVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444455555555555555444332100 00 123444444555555555555555444
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.42 E-value=1.7e-06 Score=61.96 Aligned_cols=137 Identities=10% Similarity=0.020 Sum_probs=104.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-ch
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI---KPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIM-LD 272 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 272 (349)
..++..+...+...|++++|...+++..+... .+. ..++..+...+...|++++|...++...+. +.. ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45677888889999999999999988764311 111 246788889999999999999999886542 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
..++..+...+...|++++|...+++.... +..+ ....+..+...+...|++++|.+.++...++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999887654 2111 245677888889999999999999998877654
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.38 E-value=9.9e-06 Score=69.03 Aligned_cols=131 Identities=7% Similarity=-0.105 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--------------IVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...++...+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566777778888888888888887776542211 4777788888888888888888888887664
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 018882 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG-VLEVMQ 300 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~ 300 (349)
+.+...|..+..++...|++++|...|+.+.+... -+...+..+..++.+.++.+++.+ .+..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888888888888888877653 255677777888888887776653 444443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=2.1e-05 Score=53.90 Aligned_cols=92 Identities=12% Similarity=-0.085 Sum_probs=50.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch---HHHHHHHHHH
Q 018882 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD---TVFFNCLVDA 282 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 282 (349)
+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++.+.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444455556666666665555432 1111 34455555566666666666666665543321 1 4445556666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 018882 283 YGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~ 302 (349)
+...|++++|...|+.+...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=4.6e-05 Score=52.11 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=37.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHH
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQPSI---NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT---IVTYNIVIDAFG 214 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 214 (349)
..+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...++.+.+..+. + ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHH
Confidence 334444444444444444444321 111 23334444444444444444444444433211 1 233444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 018882 215 RAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~ 231 (349)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.34 E-value=1.1e-05 Score=68.65 Aligned_cols=130 Identities=9% Similarity=-0.057 Sum_probs=92.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS--------------INTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555666667777777777777777666422111 5678888888889999999999998888776
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH-HHHHH
Q 018882 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS-VLRFI 264 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~ 264 (349)
.. +...|..+..+|...|++++|...|+++.+.. +-+...+..+..++...++.+++.+ .+..|
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 67888888888999999999999999887754 3455677777777877777776653 33433
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.34 E-value=1e-05 Score=66.82 Aligned_cols=90 Identities=9% Similarity=-0.044 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
+...|..+..++.+.|++++|...++.+.+... .+...|..+..+|...|++++|...|++..+... .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 346677777777888888888888888777653 3567777778888888888888888888777632 14555666666
Q ss_pred HHHhcCchhhhH
Q 018882 317 AYSTNGMKNHAK 328 (349)
Q Consensus 317 ~~~~~g~~~~a~ 328 (349)
++...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555544
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.34 E-value=1.2e-05 Score=66.33 Aligned_cols=123 Identities=7% Similarity=-0.029 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKY---------------HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
.+..+...+.+.|++++|...|++..+. ..+.+...|..+..++.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4666777788888888888888777651 112246788888999999999999999999998764
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
+.+...+..+..++...|++++|...++.+.+... .+...+..+...+...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999887653 366777777777777777776654
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=2.4e-06 Score=57.76 Aligned_cols=83 Identities=17% Similarity=0.082 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 018882 147 GQIDTMEKCYEKFQSAG--IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444432 1112333444444444444444444444444443322 34444444444444444444444
Q ss_pred HHHHHH
Q 018882 225 LFRLMR 230 (349)
Q Consensus 225 ~~~~~~ 230 (349)
.+++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=1.4e-05 Score=57.41 Aligned_cols=64 Identities=8% Similarity=-0.024 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...|..+..++...|++++|...++.+.+..+ .+...|..+..+|...|++++|...|+.....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 35666677777777777777777777766543 35666777777777777777777777777765
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=0.00015 Score=63.27 Aligned_cols=173 Identities=6% Similarity=-0.072 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC-
Q 018882 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH----------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG- 217 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 217 (349)
.++|++.++++.+.. +-+..+|+.--..+...|+ ++++...++.+.+..++ +..+|+.-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356777777777764 2355566665555555555 78888888888877655 7778887777777778
Q ss_pred -ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc---------
Q 018882 218 -DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--------- 286 (349)
Q Consensus 218 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------- 286 (349)
+++++.+.++.+.+.. +-+...|+.-...+...| .++++.+.++.+.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6688888888888765 456777777777777777 788888888888877653 777777777666653
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhh
Q 018882 287 -----KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNH 326 (349)
Q Consensus 287 -----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 326 (349)
+.++++.+.++........ |...|..+-..+.+.+..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578899999888877432 67788887777777776444
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=1.4e-05 Score=57.47 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
...|..+..++.+.|++++|...++...+.. +.+...|..+..++...|++++|...++...+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3556666666666677777776666666543 3445666666666777777777777766666543
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=2.3e-05 Score=55.22 Aligned_cols=65 Identities=17% Similarity=0.070 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC-CHHHH----HHHHHHHHhcCchhhhHHHHHHHHHHhh
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GCKP-DKVTY----RTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|...+++..++.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 5555555666666666666666555543 1123 23445 5555666666666666666666666554
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=0.00014 Score=63.54 Aligned_cols=175 Identities=7% Similarity=-0.052 Sum_probs=134.9
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 018882 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA----------FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (349)
...++|++.++++.... +.+..+|+..-.++...++ ++++.+.++.+.+.. +-+..+|+.-.-++.+
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34568899999998864 5567778887777777776 889999999998875 3477788887778888
Q ss_pred cC--cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------
Q 018882 111 AK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG-QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA------ 181 (349)
Q Consensus 111 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 181 (349)
.+ +++++++.++++.+.. +-+...|+.-..++.+.| .++++.+.++++.+.. +-+...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 88 6799999999999876 556777887777777888 8899999999988875 33777887777776663
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH
Q 018882 182 --------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 182 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
+.++++.+.+++.....+. +...|..+-..+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4568888888888876644 77888887777777666443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.23 E-value=7e-06 Score=66.93 Aligned_cols=149 Identities=11% Similarity=-0.009 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018882 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 345667777788888888888888887764 344321 11112222221111 1125566666
Q ss_pred HHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS-YGKAGHFE 185 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 185 (349)
+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777666553 3345566666667777777777777776665542 1133344444333 22334556
Q ss_pred HHHHHHHHHHhc
Q 018882 186 KMSAVMEYMQKY 197 (349)
Q Consensus 186 ~a~~~~~~~~~~ 197 (349)
.+...|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 666666666543
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.17 E-value=9.2e-06 Score=66.25 Aligned_cols=150 Identities=12% Similarity=0.033 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018882 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445556666667777777777777766543 22221 112222222221110 1366777778
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-HHhcCchh
Q 018882 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRA-YSTNGMKN 325 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~-~~~~g~~~ 325 (349)
+.+.|++++|...++...+... .+...|..+..+|...|++++|...|++..+. .| +...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776543 36677778888888888888888888877655 33 33344444433 23345566
Q ss_pred hhHHHHHHHHHHhh
Q 018882 326 HAKEFQDLVEKMDE 339 (349)
Q Consensus 326 ~a~~~~~~~~~~~~ 339 (349)
.+...+..+....+
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 66667666655544
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=9.8e-05 Score=51.36 Aligned_cols=84 Identities=13% Similarity=-0.078 Sum_probs=35.7
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh---
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR--- 215 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 215 (349)
|...+..++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+ ++..+..|...|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCC
Confidence 333334444444444444432 33334444444443 344444444444444433 33334444444443
Q ss_pred -cCChHHHHHHHHHHHhC
Q 018882 216 -AGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 216 -~~~~~~a~~~~~~~~~~ 232 (349)
.+++++|...|+...+.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHC
Confidence 44444444444444443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=0.0001 Score=51.31 Aligned_cols=111 Identities=14% Similarity=-0.058 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhH
Q 018882 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDK 81 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 81 (349)
+++++|++.|++..+.| ++... +...|...+.+++|++.|++..+. -+...+..+...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777765 22223 555566666677777777777664 255666666666666 667777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhc----cCcHHHHHHHHHHHhccC
Q 018882 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSED 128 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 128 (349)
|..+|++..+.| ++..+..|...|.. .++.++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777776664 45556666666665 566677777666666554
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.10 E-value=9.5e-05 Score=52.10 Aligned_cols=62 Identities=10% Similarity=-0.111 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC-------CCCchHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS-------DIMLDTVFF----NCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.|..+..++...|++++|+..++...+. .+ -+...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444444455555555555554444443 32 244455 66666677777777777776666543
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.09 E-value=5.3e-05 Score=64.67 Aligned_cols=124 Identities=9% Similarity=0.000 Sum_probs=75.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---CCC----chhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYH---YSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCS 243 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 243 (349)
+...|++++|..++++..+.. +.+ ...+++.|...|...|++++|..++++..+. | .+-...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446777777777776664321 111 2456777777777777877777777665431 1 1122355677
Q ss_pred HHHHHHhcCChhhHHHHHHHHhh-----CCCC-c-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDN-----SDIM-L-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
|...|...|++++|..++++..+ .|.. | ...+.+.+..++...+.+++|..++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766542 2221 1 233445556666677777777777777655
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.05 E-value=5.1e-05 Score=64.76 Aligned_cols=125 Identities=9% Similarity=-0.133 Sum_probs=94.6
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHH
Q 018882 212 AFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFN 277 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 277 (349)
.+...|++++|..++++..+. | .+....+++.|..+|...|++++|..++++..+. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887642 1 1123467899999999999999999999876531 21 12 345789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 278 CLVDAYGRLKCFAEMKGVLEVMQQR-----GCK-PD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.|...|...|++++|..++++..+. |.. |+ ..+...+-.++...|.+++|+..+..+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643 322 22 33455666778889999999999988865
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.03 E-value=3.3e-05 Score=51.78 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018882 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 88 (349)
++|++.|++..+.. +.+...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35677777777653 4467778888888888888888888888887653 45567778888888888888888888887
Q ss_pred HHhc
Q 018882 89 MSTQ 92 (349)
Q Consensus 89 ~~~~ 92 (349)
....
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=4.5e-05 Score=50.55 Aligned_cols=89 Identities=7% Similarity=-0.125 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------HHH
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-------KVT 310 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~ 310 (349)
...+..+...+...|++++|...++...+... .+...+..+..++...|++++|...+++..... |+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 34455555666666666666666666655432 245556666666666666666666666666542 32 334
Q ss_pred HHHHHHHHHhcCchhhhHH
Q 018882 311 YRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~ 329 (349)
+..+..++...|+.+.|.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4455555555555555544
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.98 E-value=0.00011 Score=49.09 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
+.|...++...+.. +.+...+..+...+...|++++|...++...+... .+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35777888887654 45678888899999999999999999999887654 35778888999999999999999999988
Q ss_pred Hhc
Q 018882 300 QQR 302 (349)
Q Consensus 300 ~~~ 302 (349)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.0001 Score=48.74 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+..+...+...|++++|...|++..+..+. +...+..+..++...|++++|...++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333444444444444444444444433221 33444444444444444444444444444
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=2.2e-05 Score=55.20 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCh----------hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 018882 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLF----------DKAFSLLEHMKNTPDCQPDVNTYSILIKSCL 74 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 74 (349)
.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++..+.. +.+..+|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHH
Confidence 355777888888777764 45677777777777776654 47777777777653 445667777777776
Q ss_pred hcC-----------ChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 75 KAF-----------AFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 75 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
..| ++++|.+.|++..+. .|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 653 666777777766665 45544444333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.85 E-value=0.00034 Score=44.18 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=7.9
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 018882 208 IVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~ 228 (349)
.+...+...|++++|...+++
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 48 NLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=0.00038 Score=43.93 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 018882 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3445555555666666666666666665543 224555666666666666666666666666554322 34444444444
Q ss_pred H
Q 018882 213 F 213 (349)
Q Consensus 213 ~ 213 (349)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.80 E-value=8.7e-05 Score=52.18 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-----------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
+++|+..|++..+..+. +...|..+..+|... |++++|.+.|++..+. .|+...|...+.
T Consensus 62 ~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34666666666655432 455566666666655 4788888888888776 556555544444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.70 E-value=0.00034 Score=45.42 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+-+...+..+...+...|++++|...++.+.+..+. +...|..+..+|...|++++|...|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345677888888899999999999999988876543 5678888899999999999999998887754
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.65 E-value=0.00028 Score=45.83 Aligned_cols=64 Identities=19% Similarity=0.059 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 91 (349)
+...+..+..++...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555566666666666666666655542 33444555555666666666666666555543
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.64 E-value=0.00045 Score=58.01 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=58.0
Q ss_pred HHHHhcCChhhHHHHHHHHhhCC---CC----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHH
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNSD---IM----LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----G-CKPD-KVTY 311 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~ 311 (349)
..+...|++++|..+++...+.. +. ....+++.+..+|...|++++|..++++.... | -.|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666666654321 11 12345666666666667776666666655432 1 1122 3445
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHhhhhhccCCC
Q 018882 312 RTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRP 347 (349)
Q Consensus 312 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~p 347 (349)
+.|...|...|++++|..++++..++.....++++|
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 666666666777777777666666666665555554
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.64 E-value=0.00019 Score=60.23 Aligned_cols=99 Identities=8% Similarity=0.004 Sum_probs=70.1
Q ss_pred hcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHHH
Q 018882 250 HAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----G-CKPD-KVTYRTMV 315 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~l~ 315 (349)
..|++++|..++++..+. |. .| ...+++.|..+|...|++++|..++++.... | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778888887765431 11 12 2456788888888888888888888877643 2 1233 35678888
Q ss_pred HHHHhcCchhhhHHHHHHHHHHhhhhhccCCCC
Q 018882 316 RAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~p~ 348 (349)
..|...|++++|..++++..++.....++.+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 888888888888888888888888777777663
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.48 E-value=0.0049 Score=49.87 Aligned_cols=144 Identities=8% Similarity=-0.050 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh---cC--ChHHHH---HHHHHHH
Q 018882 164 IQPSINTFNILLDSYGK--AG---HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR---AG--DLKQME---YLFRLMR 230 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~a~---~~~~~~~ 230 (349)
.+.+...|..++++... .+ +..+|..+|++..+..+. ....|..+..++.. .+ ...... ..++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 35566777777765442 22 346788888888776532 33444443333321 11 101111 1111111
Q ss_pred h-CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018882 231 S-ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 231 ~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 309 (349)
. ...+.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1224566777777666666788888888888888765 56677777788888888888888888888776 45555
Q ss_pred HHH
Q 018882 310 TYR 312 (349)
Q Consensus 310 ~~~ 312 (349)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.36 E-value=0.0049 Score=49.88 Aligned_cols=66 Identities=6% Similarity=-0.089 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018882 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+...|++++|.+.+++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3355555555555555566666666666666553 45555555555666666666666666665554
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.24 E-value=0.0015 Score=42.04 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...+...|++++|...++.+.+... .+.. .+..+..+|...|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4455666777777777777665543 2445 6666777777777777777777777665
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.18 E-value=0.0024 Score=53.58 Aligned_cols=88 Identities=10% Similarity=-0.101 Sum_probs=67.0
Q ss_pred hcCChHHHHHHHHHHHhC---CCC----CcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-----CCC-Cc-hHHHHHHHH
Q 018882 215 RAGDLKQMEYLFRLMRSE---RIK----PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-----SDI-ML-DTVFFNCLV 280 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~li 280 (349)
..|++++|..++++..+. -.. ....+++.+..+|...|++++|..++++..+ .|. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887542 111 2246788999999999999999999987653 221 23 345788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 018882 281 DAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
..|...|++++|..++++..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.13 E-value=0.0059 Score=56.04 Aligned_cols=130 Identities=14% Similarity=0.023 Sum_probs=67.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 018882 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
..++..+.+.|.++.|.++.+. |. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555556666666666554421 10 1122334567777776664332 2566777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 018882 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
++++.|.+.|..+.. |..+...+...|+.+...++.+.....|. ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776532 22333334445555555554444444332 122233344455555555555
Q ss_pred HHH
Q 018882 297 EVM 299 (349)
Q Consensus 297 ~~m 299 (349)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 433
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.12 E-value=0.0052 Score=51.62 Aligned_cols=93 Identities=11% Similarity=-0.100 Sum_probs=71.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC---CCC----cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSER---IKP----SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVF 275 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~ 275 (349)
+..+.+.|++++|..++++..+.. ..| ...+++.+..+|...|++++|+.+++++... |. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999887531 112 2467888999999999999999999876531 21 12 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 276 FNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
++.|...|...|++++|..++++..+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999887653
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.07 E-value=0.0059 Score=38.79 Aligned_cols=68 Identities=7% Similarity=-0.009 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018882 235 KPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 303 (349)
+.+...+..+..++...++ .++|..+++...+... -++.....+...+.+.|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455666666666654444 5777777777777654 366677777777788888888888888877763
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.04 E-value=0.011 Score=41.05 Aligned_cols=82 Identities=15% Similarity=0.010 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHhcCCHHHHH
Q 018882 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 293 (349)
...+.+-|.+..+.+ +++..+...+..++++++ +.+++..+++.+.+.. .| +...+-.+..+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555565555555 367777777778888877 4557888888777654 23 3455556777788888888888
Q ss_pred HHHHHHHhc
Q 018882 294 GVLEVMQQR 302 (349)
Q Consensus 294 ~~~~~m~~~ 302 (349)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888876
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.97 E-value=0.0071 Score=38.40 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=40.1
Q ss_pred CCChhhHHHHHHHHHcCCC---hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 24 DANTQSFTALLSAYGRSGL---FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.++..+..+..++...++ .++|..++++..+.. +-+..+...+...+.+.|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455556666655543333 566666666666553 445556666666666666666666666666665
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.96 E-value=0.063 Score=41.81 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-CCh
Q 018882 149 IDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKA-----GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-GDL 219 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 219 (349)
...|...+++..+. .|+ ...|..+...|.+. |+.++|...|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777775 344 56788888888874 88888888888888876433477777778888774 888
Q ss_pred HHHHHHHHHHHhCCCC--CcHHHHH
Q 018882 220 KQMEYLFRLMRSERIK--PSCVTLC 242 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~--~~~~~~~ 242 (349)
+.+...+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888876555 5544433
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.90 E-value=0.046 Score=36.82 Aligned_cols=150 Identities=11% Similarity=0.114 Sum_probs=89.9
Q ss_pred hhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 28 QSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 28 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
.....|+.+ +.-.|..++..++..+..+. .+..-||-++--....-+-+-..++++..-+. -|..
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis------ 72 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD------ 72 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH------
Confidence 344555555 55678888888888887764 35566666666666666666666666655432 1221
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
.+|+.......+-.+ ..+.......+......|.-++..+++..+... .+|++...-.+..+|.+.|+..
T Consensus 73 ----~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 73 ----KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp ----GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred ----hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchh
Confidence 223333333333222 122334455566666777777777777775443 3566777777777777777777
Q ss_pred HHHHHHHHHHhcCCC
Q 018882 186 KMSAVMEYMQKYHYS 200 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~ 200 (349)
++.+++.+.-+.|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 777777777776643
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.86 E-value=0.019 Score=36.63 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=23.5
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSIN-TFNILLDSYGKAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (349)
+...|++++|...++++.+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344444444444444444432 11333 4444444444444444444444444433
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.80 E-value=0.012 Score=40.84 Aligned_cols=86 Identities=8% Similarity=-0.094 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCchhhhH
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK---CFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 328 (349)
...+.+-|......+. ++..+...+..++++.+ +.+++..+|++..+.+ .| +...+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666555 67888888999999988 6679999999999874 24 3556677777899999999999
Q ss_pred HHHHHHHHHhhhh
Q 018882 329 EFQDLVEKMDETC 341 (349)
Q Consensus 329 ~~~~~~~~~~~~~ 341 (349)
++++.+.++++.-
T Consensus 92 ~y~~~lL~ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999988743
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.038 Score=50.65 Aligned_cols=102 Identities=8% Similarity=-0.002 Sum_probs=72.3
Q ss_pred HHHHccCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 018882 141 RAFGNSGQIDTMEK-CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 141 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
......+++++|.+ ++.. + ++......++..+.+.|.++.|.++.+.- . .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCH
Confidence 44456788888866 4422 1 11223377788888999999988766321 1 112334678999
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018882 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
+.|.++.+.+ .+...|..+.+.+.+.++++.|.+.|..+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 9999986543 4668999999999999999999999998764
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.61 E-value=0.038 Score=35.78 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAG------IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
+..+...+...|++..|...++...+.- -.+...++..+..++.+.|+++.|...++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444433320 012333444444555555555555555554444
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.56 E-value=0.055 Score=37.24 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=43.0
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018882 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 316 (349)
.+++++|.++|+.+.+..-.. ...|-....--.+.|+...|.+++......+.+| ...+...++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 367888888888776543333 6666666666777888888888888888776554 333444443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.12 Score=36.86 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=54.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018882 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666665544 1456666666666666666666666665431 23333344555666555
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018882 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
.++-+.....|- ++.....+.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 555444444331 2333344555666666666654
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.11 Score=37.15 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=22.3
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHH
Q 018882 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKM 124 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 124 (349)
....|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 33445555555444433 13445555555555555555555555444
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.45 E-value=0.025 Score=36.70 Aligned_cols=71 Identities=6% Similarity=-0.088 Sum_probs=57.9
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 018882 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS------DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 308 (349)
.+......+...+...++++.|...++.+.+. .-.+...++..+..+|.+.|+++.|...+++.... .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 45566778899999999999999999887653 12346788999999999999999999999999876 4543
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.44 E-value=0.12 Score=35.69 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018882 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (349)
++.++|.++|+.++..+-.. ...|....+--.+.|+...|.+++......+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56677777777665442222 5555555555566777777777777777666554
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.40 E-value=0.047 Score=36.48 Aligned_cols=85 Identities=14% Similarity=0.009 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh---HHHHHHHHhhCCCC-chHHHHHHHHHHHHhcCCHHHH
Q 018882 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK---LGSVLRFIDNSDIM-LDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a 292 (349)
.....+.+-|......| .++..+-..+..++.++.+... ++.+++.+.+.+.+ -.....-.|.-++.+.|+++.|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555565555545 3677777778888888887665 77788877765421 2344555677788899999999
Q ss_pred HHHHHHHHhc
Q 018882 293 KGVLEVMQQR 302 (349)
Q Consensus 293 ~~~~~~m~~~ 302 (349)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888876
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.27 E-value=0.11 Score=40.40 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=66.2
Q ss_pred hhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc-Cc
Q 018882 43 FDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLK-----AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA-KM 113 (349)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 113 (349)
...|...+++..+. .|+ ...|..+...|.. .|+.++|.+.|++..+.+..-+..++......+++. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34677777777766 355 5678888888888 488889999998888874322477777788888874 88
Q ss_pred HHHHHHHHHHHhccCCC--cchhhHH
Q 018882 114 FAEMELTLVKMLSEDCE--PDVWTMN 137 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~--~~~~~~~ 137 (349)
.+++.+.+++....... |+....+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888888876544 4443333
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.09 E-value=0.18 Score=34.08 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=95.4
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHH
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
..-.|..++..++..+..... +..-||.+|.-....-+-+-..++++.+-+. .|. ...|+....
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 445688888888888877653 5556677776666666666666666665432 121 234555555
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
...+-.+ ..+...+...+..+...|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5555433 123455666677788888888888888886543 3567788888888899999999999998888888
Q ss_pred CCC
Q 018882 303 GCK 305 (349)
Q Consensus 303 ~~~ 305 (349)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 764
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.74 Score=38.85 Aligned_cols=255 Identities=7% Similarity=0.041 Sum_probs=139.8
Q ss_pred CChHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH----Hhc
Q 018882 6 KQPEKAHELFQAMVDE-----GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC----LKA 76 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 76 (349)
|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+.+..+..+ .....+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 6677888777666543 2223455677888889999999988888877766544222 2223333322 233
Q ss_pred CChhHHH--HHHHHHHh--cC-CCC---chHHHHHHHHHHhccCcHHHHHHHHHHHhcc--CCCc---chhhHHHHHHHH
Q 018882 77 FAFDKVQ--ALLSDMST--QG-IRP---NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE--DCEP---DVWTMNCTLRAF 143 (349)
Q Consensus 77 ~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~ 143 (349)
...+... .+.+.+.. .| +-. .......|...+...|++.+|.+++..+... +... -...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333211 11111111 01 111 1223456778888889999999999887643 2111 135667778888
Q ss_pred HccCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchhhHH----HHHHH
Q 018882 144 GNSGQIDTMEKCYEKFQS----AGIQPS--INTFNILLDSYGKAGHFEKMSAVMEYMQKY-HYSWTIVTYN----IVIDA 212 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~ 212 (349)
...+++..|..++.++.. ...+|+ ...+...+..+...+++.+|...|.++... ...-+...+. .++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 899999999988887642 222222 234666777788889998888887766432 1111222221 11111
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc--CChhhHHHHHH
Q 018882 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA--GKPEKLGSVLR 262 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~ 262 (349)
..-.+..+.-..++.........++...+..++.+|... .+++.+...+.
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 112222222223333332222235667788888887653 23444444443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.55 E-value=0.19 Score=33.58 Aligned_cols=82 Identities=9% Similarity=-0.060 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHH---HHHHHHHHhccCCCc--chhhHHHHHHHHHccCCHHHHH
Q 018882 79 FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE---MELTLVKMLSEDCEP--DVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
...+.+-|......|. ++..+-..+..++.++..... ++.+++.+...+ .| .....-.+.-++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444332 455555555556665554433 556666655543 12 2223334444555666666666
Q ss_pred HHHHHHHhc
Q 018882 154 KCYEKFQSA 162 (349)
Q Consensus 154 ~~~~~~~~~ 162 (349)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.07 E-value=3.8e-05 Score=63.57 Aligned_cols=245 Identities=13% Similarity=0.135 Sum_probs=159.0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
.+.+|..|..+....+++.+|++.|-+ ..|+..|..++.+..+.|.+++....+...++.. .++..=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 466788899998888988888876632 2345567788999999999999998887766653 2445556888
Q ss_pred HHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc--------------------CCC
Q 018882 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--------------------GIQ 165 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~ 165 (349)
-+|++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..+... .-.
T Consensus 124 ~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998865533322 1244444445555555555555554444333211 113
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
.++.||..+-.+|...+++.-|...--.+.- .......++..|-..|.+++.+.+++...... +....+|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 4677888888889888887766554433332 22233456667788888999888888876433 46778888888
Q ss_pred HHHHhcCChhhHHHHHHHHhhC-CCCc------hHHHHHHHHHHHHhcCCHHHHH
Q 018882 246 RAYGHAGKPEKLGSVLRFIDNS-DIML------DTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~g~~~~a~ 293 (349)
-.|++- ++++..+.++....+ +++- ....|..++-.|.+-.+++.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 777764 566666665554332 2211 2446777777777777777664
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.97 E-value=2.3 Score=39.40 Aligned_cols=259 Identities=9% Similarity=-0.026 Sum_probs=127.2
Q ss_pred HHHcCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-------CCchHHHHHHHHH
Q 018882 36 AYGRSGLFDKAFSLLEHMKNTP-DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI-------RPNTVTYNTLIDA 107 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 107 (349)
+....|+.++++.++....... .-.+....=..+.-+.+..|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556777777777777665421 1022233333444455555555566666665544311 0112222222233
Q ss_pred HhccCc-HHHHHHHHHHHhccCCCcch--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcC
Q 018882 108 YGRAKM-FAEMELTLVKMLSEDCEPDV--WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS--YGKAG 182 (349)
Q Consensus 108 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 182 (349)
++-.|. -+++...+..+.... .+.. ..-..+...+.-.|+.+....++..+.+.. +..+...+..+ +...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 234555555554332 1111 111223334556677776677776665532 22333333333 33567
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018882 183 HFEKMSAVMEYMQKYHYSWTIVTYN--IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
+.+.+..+.+.+.... .|....-. ++..+|+..|+......++..+.... ..+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777766532 22222222 23345667777766666777776532 22333333333444456666667777
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 018882 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQ 301 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 301 (349)
++.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 76665543 34444444444444444443 456667776654
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.94 E-value=4.5e-05 Score=63.18 Aligned_cols=248 Identities=14% Similarity=0.105 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
...|..+..+..+.+.+.+|++.| ++. -|+..|..++.+..+.|.+++-.+.+...++..-.|. .=+.++-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHH
Confidence 456888999999998888887655 332 2677889999999999999999998887776643443 44689999
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------CCCc
Q 018882 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--------------------YSWT 202 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~ 202 (349)
|++.++..+.++++ ..|+..-...+.+-|...|.++.|.-+|..+.... -..+
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999877654433 23555556677777888888877777766543211 0236
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018882 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
+.||..+-.+|...+++.-|...--.++-. | .-...++..|-..|.+++.+.+++...... .....+|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 788999999999999888776665544421 2 123346677888999999999998877543 3578899999988
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHh
Q 018882 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
|++- ++++.++-++..-.+ .| --.+|++|.+.--|.++.-++....+.+
T Consensus 273 YsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred HHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 9886 344444444332211 11 1134556666666665555555444433
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.42 E-value=3.1 Score=38.50 Aligned_cols=295 Identities=9% Similarity=0.003 Sum_probs=156.8
Q ss_pred HHHHHHHHcCCChhHH-HHH-HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCch--HHHHHHHH
Q 018882 31 TALLSAYGRSGLFDKA-FSL-LEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLID 106 (349)
Q Consensus 31 ~~l~~~~~~~~~~~~a-~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 106 (349)
..+..++...|--.+. +.. .+++.+. .+....-.+.--+.+..|+.+++..+++.....+-..+. ..=..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3566777777754332 221 2344432 222233334445677889999998888776652111222 23233444
Q ss_pred HHhccCcHHHHHHHHHHHhccCC-------CcchhhHHHHHHHH--HccCCHHHHHHHHHHHHhcCCCCCHHHHH--HHH
Q 018882 107 AYGRAKMFAEMELTLVKMLSEDC-------EPDVWTMNCTLRAF--GNSGQIDTMEKCYEKFQSAGIQPSINTFN--ILL 175 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~ 175 (349)
+.+..|...++..++.......- .+....-..+.-+. .-.++ +++.+.+..+.... .+...... ++.
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALG 497 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMG 497 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHh
Confidence 55666666678887777664321 12222223333333 33444 34555555555432 11111122 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCC
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT--LCSLVRAYGHAGK 253 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 253 (349)
..+.-.|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+.... .|.... ...+.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 33456678887788887776542 2122223333344557889999999988887642 233222 2234556778889
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch-hhhHHHHH
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK-NHAKEFQD 332 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~ 332 (349)
.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|..+.-..+.-+....|.. ..+...+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 887777888887643 2344444444445556777777777777666543 34444444444444545543 23444444
Q ss_pred HH
Q 018882 333 LV 334 (349)
Q Consensus 333 ~~ 334 (349)
.+
T Consensus 654 ~L 655 (963)
T 4ady_A 654 PL 655 (963)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.31 E-value=0.24 Score=40.94 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHHHHH
Q 018882 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTYRTM 314 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 314 (349)
...++..+...|+++++...+..+....+ .+...|..++.++.+.|+..+|++.|+...+ .|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566677778888888877777766543 4777888888888888888888888877654 3888877664433
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.23 E-value=3.5 Score=39.58 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=29.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018882 32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 89 (349)
.++..+...+.++-+.++..... .+...--.+..++...|++++|..+|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555556666666655544332 23333334556677777777777777654
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.62 Score=41.97 Aligned_cols=54 Identities=13% Similarity=-0.044 Sum_probs=37.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
...+...|+++-|+.+-++....- +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 444556777777777777776543 444677777777777777777777777665
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.09 E-value=0.25 Score=40.87 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhc-----cCCCcchhhHH
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTMN 137 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 137 (349)
+...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34556677778888888888888877663 55777888888888888888888888887654 27788776544
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.85 Score=41.08 Aligned_cols=127 Identities=9% Similarity=0.064 Sum_probs=68.4
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhc------CCCC-CH----
Q 018882 102 NTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ-IDTMEKCYEKFQSA------GIQP-SI---- 168 (349)
Q Consensus 102 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~---- 168 (349)
..++..+...++ .+.|..+++++.......+......++..+...++ --+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555555 46677777777765322222222233333333322 22344444443321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 169 ------NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 169 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.....=.+.+...|+++.|+.+-++.....+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 01111234455677888888888777765432 5778888888888888888888777765
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.82 E-value=4.9 Score=38.60 Aligned_cols=194 Identities=8% Similarity=-0.020 Sum_probs=119.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---------------
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY--------------- 199 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--------------- 199 (349)
++..+...+.++.+.++..- .+.+...--.+..++...|++++|...|.+.... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33444455555555443322 2234444456677889999999999999764210 00
Q ss_pred ---CCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch
Q 018882 200 ---SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272 (349)
Q Consensus 200 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (349)
..-..-|..++..+.+.+.++.+.++-+...+.....+ ...|..+.+++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 00123467788888899999999988877665422211 236888999999999999999999887765443
Q ss_pred HHHHHHHHHHHHhcCCHH------------HHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCchhhhHH-HHHHHHHH
Q 018882 273 TVFFNCLVDAYGRLKCFA------------EMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEKM 337 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~------------~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~ 337 (349)
......|+..++..|..+ +..+++..-.+. .+...+.-|..|-.-+...|++..|.+ +++.+.++
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 456667777777665544 444444332221 111122335555555677777776655 66777777
Q ss_pred hh
Q 018882 338 DE 339 (349)
Q Consensus 338 ~~ 339 (349)
..
T Consensus 1051 ~~ 1052 (1139)
T 4fhn_B 1051 IS 1052 (1139)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.80 E-value=0.97 Score=30.40 Aligned_cols=69 Identities=7% Similarity=-0.065 Sum_probs=48.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCh---hhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 234 IKPSCVTLCSLVRAYGHAGKP---EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
-.|+..+-..+..++.++.+. ..++.+++.+.+.+..-....+-.|.-++.+.|+++.|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 356667767777777777664 356777777766553234556666777888888888888888888876
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.56 E-value=0.84 Score=28.90 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=26.9
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555566666666666666666666666666555544
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.27 E-value=1.7 Score=29.19 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
+..+-++.+....+.|++.+....+++|-+.+++..|.++|+-.+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555555566666666666666666666666666666666554
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.09 E-value=1.3 Score=31.12 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-------NTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 91 (349)
..+-.-+..+...|.++.|+-+.+.+....+..|+. .++..+..++...+++.+|...|++..+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344555677888899999888887765443223442 3456677888889999999999988644
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.74 E-value=5.3 Score=33.64 Aligned_cols=259 Identities=10% Similarity=0.081 Sum_probs=147.7
Q ss_pred CChhHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCchHH--HHHHHHHHhccCc
Q 018882 41 GLFDKAFSLLEHMKN----TPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVT--YNTLIDAYGRAKM 113 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~l~~~~~~~~~ 113 (349)
|+++.|++.+-.+.+ .............++..|...++++...+.+.-+.+. |..+...+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 677888877755543 2223455677888999999999999988877766544 43333222 1222222222222
Q ss_pred HH--HHHHHHHHHhc--cC-CCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHh
Q 018882 114 FA--EMELTLVKMLS--ED-CEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--GIQPS---INTFNILLDSYGK 180 (349)
Q Consensus 114 ~~--~a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 180 (349)
.+ .-..+.+.... .| +-. .......+...+...|++.+|.+++..+... |.... ...+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22222222211 11 111 2233466788899999999999999998643 22111 3456777889999
Q ss_pred cCCHHHHHHHHHHHHh----cCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCcHHHH----HHHHHHHH
Q 018882 181 AGHFEKMSAVMEYMQK----YHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKPSCVTL----CSLVRAYG 249 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~~l~~~~~ 249 (349)
.+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++... ....+...+ ..++.+..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999988743 222222 245666777788899999998888776532 111122211 22222222
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 018882 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVM 299 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m 299 (349)
-.+....-..++.........++...|..++.+|... .+++.+.+.|...
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 2222222223333332222235777888899988764 3566666555443
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.14 E-value=1.7 Score=29.20 Aligned_cols=72 Identities=7% Similarity=-0.121 Sum_probs=53.8
Q ss_pred CCchHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 269 IMLDTVFFNCLVDAYGRLKCF---AEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
..|+..+--.+..++.+..+. .+++.+++++.+.+..-....+-.+.-++.+.|+++.|.++.+.+.++++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 346666666677778777654 568889999887752223555667777999999999999999999887764
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.13 E-value=1.9 Score=27.33 Aligned_cols=46 Identities=11% Similarity=0.250 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555556666666666666666666666666655543
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.05 E-value=7.8 Score=34.23 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Q 018882 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144 (349)
Q Consensus 65 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (349)
.-+..+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Confidence 334556667777777766654432 23355555556677777788777777666665554 344556677777777
Q ss_pred ccCCH
Q 018882 145 NSGQI 149 (349)
Q Consensus 145 ~~~~~ 149 (349)
+.|..
T Consensus 148 ~~g~l 152 (618)
T 1qsa_A 148 ASGKQ 152 (618)
T ss_dssp HTTCS
T ss_pred HCCCC
Confidence 65544
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.97 E-value=3.3 Score=28.25 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=55.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCChh---hHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018882 233 RIKPSCVTLCSLVRAYGHAGKPE---KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 307 (349)
+-.|+..+-..+..++.++.+.+ +++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 33677788888888888887754 67778888776554335556667888899999999999999999987 554
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.80 E-value=5.5 Score=33.39 Aligned_cols=96 Identities=7% Similarity=-0.163 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCcHHH--HH
Q 018882 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS---ERIKPSCVT--LC 242 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~ 242 (349)
+...+...|.+.|+++.|.+.+.++..... ..-...+-..++.+...+++..+...+.++.. .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556778888888888888888888875432 22356667777778888888888888877643 222222211 11
Q ss_pred HHHHHHHhcCChhhHHHHHHHHh
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.-...+...+++..|...|-...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 11222345566776666665543
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.66 E-value=4.3 Score=27.73 Aligned_cols=69 Identities=10% Similarity=-0.065 Sum_probs=44.9
Q ss_pred CCchhhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 200 SWTIVTYNIVIDAFGRAGDL---KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
.|+..+--.+.-++.++.+. .+++.+++.+...+..-.....-.+.-++.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45666666666666666644 4567777777664422233444456667888888888888888887754
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.59 E-value=4.1 Score=27.45 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
..+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-++..- .+....|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 44445555555566666666666666666666666666666665432 12233454444
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.41 E-value=8.6 Score=32.18 Aligned_cols=59 Identities=8% Similarity=-0.139 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCchHHHHHHHHHHhccCcHHHHHHHHHHH
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKM 124 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 124 (349)
...+...+.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455555555555555555555443 12222334444555555555555555555444
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.07 E-value=2.3 Score=32.70 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=25.8
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018882 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.+.|+++++++....-.+.. |.|...-..++..+|-.|++++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455555555444443332 344444445555555555555555544444443
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.29 E-value=5.1 Score=30.82 Aligned_cols=19 Identities=32% Similarity=0.176 Sum_probs=10.4
Q ss_pred HHHHHHcCCChhHHHHHHH
Q 018882 33 LLSAYGRSGLFDKAFSLLE 51 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~ 51 (349)
.+...++.|+++....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444556677665555554
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.67 E-value=13 Score=29.41 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=16.5
Q ss_pred HHHhcCchhhhHHHHHHHHHHh
Q 018882 317 AYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
-|...|+...|..+++.+.+.-
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 3556789999999998776543
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.52 E-value=8.6 Score=27.08 Aligned_cols=55 Identities=5% Similarity=0.034 Sum_probs=26.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-CCCc-------hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYH-YSWT-------IVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
+..+...+.++.|+-+.+.+.... ..|+ ..++..+.+++...+++..|...|++.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444455555555555544432211 1111 124445555556666666666666654
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.51 E-value=5.7 Score=25.07 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHH
Q 018882 42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 121 (349)
..++|..+-+.+...+ . ....--+-+..+.+.|++++|..+.+.+. .||...|-.|-. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 4566666666665542 1 22222233445666677777665544332 566666655433 3556666666666
Q ss_pred HHHhccCCCcchhhHH
Q 018882 122 VKMLSEDCEPDVWTMN 137 (349)
Q Consensus 122 ~~~~~~~~~~~~~~~~ 137 (349)
..+..+| .|....|.
T Consensus 92 ~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTCS-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 5665555 44444443
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.23 E-value=10 Score=27.70 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc
Q 018882 60 QPDVNTYSILIKSCLK--AFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD 132 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 132 (349)
+-|..-....+...-. .++...+..+|..|...|+-.. +..|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4555554444443333 3446677888888877765433 34566666777777888888888888777766663
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.08 E-value=6 Score=24.98 Aligned_cols=78 Identities=6% Similarity=-0.017 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018882 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
..++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+... .||...|..+.. .+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45556655555555432 11111122234455666666665544433 555555544432 35555566665555
Q ss_pred HHHhcC
Q 018882 158 KFQSAG 163 (349)
Q Consensus 158 ~~~~~~ 163 (349)
.+...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555554
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.03 E-value=6.1 Score=25.00 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHH
Q 018882 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
...++|..+-+.+...+ . ....--+-+..+.+.|++++|..+.+.+. .||...|-.|-. .+.|..+++...
T Consensus 21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 34566766666666542 1 22222233455667777777766654433 566666655543 355666666666
Q ss_pred HHHHhccCCCcchhhHH
Q 018882 121 LVKMLSEDCEPDVWTMN 137 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (349)
+..+..+| .|....|.
T Consensus 92 L~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCC-CHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 66666555 44444443
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.36 E-value=6.6 Score=24.86 Aligned_cols=79 Identities=9% Similarity=0.017 Sum_probs=39.4
Q ss_pred CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018882 77 FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
...++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+... .||...|..+.. .+.|-.+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345566666555555432 11111122234555666666666555443 555555544433 3555555555555
Q ss_pred HHHHhcC
Q 018882 157 EKFQSAG 163 (349)
Q Consensus 157 ~~~~~~~ 163 (349)
..+...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555554
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.58 E-value=10 Score=29.02 Aligned_cols=207 Identities=13% Similarity=0.080 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH---HHHHHHHHHhccCcHHHHHHHHHHHhccCCCcch---hhHHHHH
Q 018882 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV---WTMNCTL 140 (349)
Q Consensus 67 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~ 140 (349)
++.+...++.|+.+.+..++ +.|..++.. .-...+...+..|+.+-+..++ +.|..++. .-.+ .+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t-~L 76 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL----RHGADPVLRKKNGAT-PF 76 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCC-HH
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCC-HH
Confidence 34566677888887655554 445444322 1123444555667765444444 34433322 2222 23
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-------------
Q 018882 141 RAFGNSGQIDTMEKCYEKFQSAGIQPSIN---TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV------------- 204 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------- 204 (349)
...+..|+.+ +++.+.+.|..++.. -.+ .+...+..|+.+-+ +.+.+.+..++..
T Consensus 77 ~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 77 LLAAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred HHHHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccC
Confidence 3344556654 445555666554321 222 23344566766544 3444445443321
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH--HHHH
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF--FNCL 279 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 279 (349)
..+ .+...+..|+.+-+..+++.. |..++ ..-.+.+.. .+..++......+++.+.+.|..++... -...
T Consensus 148 g~t-~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~ 222 (285)
T 1wdy_A 148 GAT-ALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222 (285)
T ss_dssp CCC-HHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCc-HHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 112 333344566665555444321 33332 222333333 3445666556677777777776554321 1123
Q ss_pred HHHHHhcCCHHHHHHHH
Q 018882 280 VDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~ 296 (349)
+...++.|..+-+..++
T Consensus 223 L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 44455566665444333
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=77.49 E-value=27 Score=28.31 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhh
Q 018882 31 TALLSAYGRSGLFDKAFSLLEHMK 54 (349)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~ 54 (349)
..++.-|...++.++|...++.+.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 344555555666666666665543
No 270
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=75.24 E-value=19 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=10.3
Q ss_pred HHHcCCChhHHHHHHHHhhc
Q 018882 36 AYGRSGLFDKAFSLLEHMKN 55 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~ 55 (349)
.|.++|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34455555555555555543
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.15 E-value=44 Score=29.57 Aligned_cols=249 Identities=9% Similarity=-0.027 Sum_probs=127.5
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Q 018882 33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
-+..+.+.+++...+.++.. .+.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 34455556666555543321 14455555667778888898887877777776665 335567777887777655
Q ss_pred cHHH--HHHHHHHHhccCC-----------Ccchh-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH---HHHHHH
Q 018882 113 MFAE--MELTLVKMLSEDC-----------EPDVW-TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN---TFNILL 175 (349)
Q Consensus 113 ~~~~--a~~~~~~~~~~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~ 175 (349)
.+.. ...-++.+...+- .++.. ....++....+ ...+..... . ..++.. .+...+
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAF 222 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHh---c--cCCChhhHHHHHHHH
Confidence 4322 3333333333321 11111 11111111111 111111111 1 122222 122223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhhH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 018882 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY----NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA 251 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (349)
.-+.+. +.+.|...+....+... .+.... ..+.......+...++...+....... .+.....-.+....+.
T Consensus 223 ~rlar~-d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 223 ASVARQ-DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence 333333 77888888887764331 222222 222223333442445555555544332 3333333344445567
Q ss_pred CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018882 252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 301 (349)
|+++.|...|+.+..... ......--+..++...|+.++|..+|+.+..
T Consensus 299 ~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999998888865322 2334344566777888999999888887653
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.45 E-value=37 Score=27.97 Aligned_cols=233 Identities=12% Similarity=0.038 Sum_probs=132.0
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCchHHH--
Q 018882 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTY-- 101 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 101 (349)
.+...|...|.+.|+.++..+++...+..-+..|- ......++..+.... ..+.-.++..+..+..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45677889999999999999999877653221222 234556777666643 33333444443333210 011233
Q ss_pred ----HHHHHHHhccCcHHHHHHHHHHHhccCCCc-----chhhHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCCHHH
Q 018882 102 ----NTLIDAYGRAKMFAEMELTLVKMLSEDCEP-----DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--GIQPSINT 170 (349)
Q Consensus 102 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 170 (349)
..++..|...|++.+|.+++.++.+.--.. -...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 257889999999999999998887642121 2345666678888999999999999887543 22233333
Q ss_pred HHHH----HHHHH-hcCCHHHHHHHHHHHHh-cCCC--C---chhhHHHHHHHHHhcCChHHHHHHHH-HH-HhCCCCCc
Q 018882 171 FNIL----LDSYG-KAGHFEKMSAVMEYMQK-YHYS--W---TIVTYNIVIDAFGRAGDLKQMEYLFR-LM-RSERIKPS 237 (349)
Q Consensus 171 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~-~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~-~~~~~~~~ 237 (349)
-..+ ...+. ..+++..|...|-+..+ ..-. | +...|..+... .. ++..+...++. .. ... ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l~-~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-ML-GQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HT-TCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-Hc-CCHHHHHHHhcccccccc-CCcc
Confidence 2211 22345 68899999888765532 1111 1 12233333222 22 33333333222 11 111 2466
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018882 238 CVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
...+..++.++ ..+++.....++....
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 66666677665 4567766666666543
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.61 E-value=21 Score=24.72 Aligned_cols=50 Identities=4% Similarity=-0.001 Sum_probs=22.2
Q ss_pred HHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 018882 117 MELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP 166 (349)
Q Consensus 117 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 166 (349)
+..+|..|...|+-. -+..|......+...|++.+|.++|..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344444444443221 22334444444445555555555555544444443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.66 E-value=27 Score=25.53 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018882 146 SGQIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
.+...++..+|..|...|+-. -...|......+...|++.+|..+|+.-.+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 333556677777776665443 34456666666667777777777777766665555
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.19 E-value=43 Score=26.86 Aligned_cols=190 Identities=13% Similarity=0.130 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018882 6 KQPEKAHELFQAMVDEGCD----ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 81 (349)
+.+++.++-++.-.+.|-- ---..|.++..-|.+++++++|++++-.-.. .+.+.|+...
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~----------------~ll~~~Q~~s 73 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ----------------TLLRSGQGGS 73 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH----------------HHHHCCCcch
Confidence 3445555555555555511 0123456666678888888888887654321 2334455443
Q ss_pred H----HHHHHHHHhcCCCCchHHHHHHHHHHhccCcHH-HHHHHHHHHhc----cC--CCcchhhHHHHHHHHHccCCHH
Q 018882 82 V----QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA-EMELTLVKMLS----ED--CEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 82 a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
+ .-+++-+.+.++++|......|+..+.....-+ .=.++++++++ .| ..-|......+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 3 334455566677788777777777766554311 11122222221 11 2345566677778888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+|...|- .|-.++...+..++.-+...+...+ ++...-..++ -|...++...|..+++...
T Consensus 154 ~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 154 AAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 8877662 2334344566555544444433111 1222222333 3445677777777665554
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=69.10 E-value=45 Score=27.07 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMS 90 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~ 90 (349)
...++.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4456667777788888877777754
No 277
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=68.81 E-value=4.5 Score=30.80 Aligned_cols=54 Identities=19% Similarity=0.027 Sum_probs=28.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCchHH-------HHHHHHHHh--ccCcHHHHHHHHHH
Q 018882 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVT-------YNTLIDAYG--RAKMFAEMELTLVK 123 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~ 123 (349)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4445566777777777776666655544332 233333332 45665555555544
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.09 E-value=45 Score=26.73 Aligned_cols=192 Identities=6% Similarity=-0.051 Sum_probs=94.2
Q ss_pred CcHHHHHHHHHHHhccCCC----cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018882 112 KMFAEMELTLVKMLSEDCE----PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (349)
+..++.+.-++.-++.|-- ---.+|.++..-|.+.+++++|.+++..- ...+.+.|+...+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg 74 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSG 74 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchH
Confidence 3444445555554444411 11234455555566666666665554331 1234455665555
Q ss_pred HHHH----HHHHhcCCCCchhhHHHHHHHHHhcCChH-HHHHHHHHHHh----CC--CCCcHHHHHHHHHHHHhcCChhh
Q 018882 188 SAVM----EYMQKYHYSWTIVTYNIVIDAFGRAGDLK-QMEYLFRLMRS----ER--IKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 188 ~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
.++- +-..+.+.++|......++..+.....-+ .-..+.+++.. .| ..-++.....+...|.+.+++.+
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 4443 44556667777777777776665544211 11223333321 11 23344555566666667776666
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 018882 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
|...|- . +-.++...+..++.-+...+... .++...-.+++ -|...++...|..+++.+.+
T Consensus 155 Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 155 AEKHLV--L--GTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 665552 1 22233344444433333322211 11222223333 45666888899888877765
Q ss_pred H
Q 018882 337 M 337 (349)
Q Consensus 337 ~ 337 (349)
.
T Consensus 216 ~ 216 (336)
T 3lpz_A 216 A 216 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.17 E-value=52 Score=27.12 Aligned_cols=230 Identities=7% Similarity=-0.054 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCC---CchHHHHHHHHHHhccC-cHHHHHHHHHHHhccCCCcchhhH--
Q 018882 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIR---PNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTM-- 136 (349)
Q Consensus 64 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 136 (349)
.+...+...|.+.|+.++..+++...... +.. ........++..+.... ..+.-.++..+..+.. .....+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44567888899999999998888776442 111 13445667787776643 3444445554444321 1111222
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCchhh
Q 018882 137 ----NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS-----INTFNILLDSYGKAGHFEKMSAVMEYMQKY--HYSWTIVT 205 (349)
Q Consensus 137 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 205 (349)
..++..|...|++.+|.+++..+.+.=-..| ..++..-+..|...+++..+...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3578889999999999999988876421212 344666678889999999999999877543 22233332
Q ss_pred HHHH----HHHHH-hcCChHHHHHHHHHHHh----CCCCCc---HHHHHHHHHHHHhcCChhhHHHHHH-H-HhhCCCCc
Q 018882 206 YNIV----IDAFG-RAGDLKQMEYLFRLMRS----ERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLR-F-IDNSDIML 271 (349)
Q Consensus 206 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~-~-~~~~~~~~ 271 (349)
...+ ...+. ..+++..|...|-+..+ .+ .|. ...|..+. ..-.++..+...++. . .... ..|
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~--aLl~~~r~el~~~l~~~~~~~~-~~p 254 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLC--KIMLGQSDDVNQLVSGKLAITY-SGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH--HHHTTCGGGHHHHHHSHHHHTT-CSH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHH--HHHcCCHHHHHHHhcccccccc-CCc
Confidence 2221 22345 78999999887766532 12 121 12232222 222334333333332 1 1222 346
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 299 (349)
....+..++.+|. .+++.+...+++..
T Consensus 255 ei~~l~~L~~a~~-~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 255 DIDAMKSVAEASH-KRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 6666666666654 45666666665554
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.50 E-value=32 Score=24.14 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc
Q 018882 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD 132 (349)
Q Consensus 60 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 132 (349)
+-|..-....+...-.. +....+|..|...|+-.. +..|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 34444444444322222 335556666666654433 33445555556666666666666666666655553
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=65.46 E-value=45 Score=25.73 Aligned_cols=202 Identities=10% Similarity=-0.012 Sum_probs=99.0
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchH---HHHHHHHHHhc
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TYNTLIDAYGR 110 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 110 (349)
+...+..|+.+-+..+++.-.. ++...-.+.+...+..|+.+-+..+ .+.|..++.. -++ .+...+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t-~L~~A~~ 104 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGAL-----KNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNT-ALYYAVD 104 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGG-----GSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCc-HHHHHHH
Confidence 4445567888766666654222 1111113345556677777655444 4455544432 223 3334456
Q ss_pred cCcHHHHHHHHHHHhccCCCcch---hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 018882 111 AKMFAEMELTLVKMLSEDCEPDV---WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 186 (349)
.|+.+-+..+++. |..++. .-+...+...+..|+.+ +.+.+.+.|..+ +...-.+.+...+..|+.+-
T Consensus 105 ~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 6776655555444 333332 12233445555667765 444455555433 22122344455567888887
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018882 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 263 (349)
+..+++.-...... +..-.+..+...+..|+. ++.+.+.+.|..++..... -+..|+.+-+..+++.
T Consensus 177 v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 177 MILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHHc
Confidence 77666654332221 222222222333445654 3445555667666655421 2446666655555544
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=63.44 E-value=54 Score=25.93 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHh
Q 018882 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF--DKVQALLSDMST 91 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~ 91 (349)
...++.-|...|+.++|...++++... .-.......++......++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p---~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLG---EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG---GGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc---chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 456788888889999999988886432 11222333444444444432 234456666653
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.84 E-value=53 Score=25.32 Aligned_cols=184 Identities=12% Similarity=0.025 Sum_probs=84.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc---hhhHHHHHHHHHc
Q 018882 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD---VWTMNCTLRAFGN 145 (349)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 145 (349)
.+...+..|+.+-+..++ +.|..++...-...+...+..|+.+-+..+++ .|..++ ..-.+. +...+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~-L~~A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNTA-LYYAVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcH-HHHHHH
Confidence 344556677877655554 44444333222234455566777665544443 343332 222222 334455
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCChHH
Q 018882 146 SGQIDTMEKCYEKFQSAGIQPSIN---TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 221 (349)
.|+.+-+.- +.+.|..++.. -+.+.+...+..|+.+-+..+ .+.+..+ +...-...+...+..|+.+-
T Consensus 105 ~g~~~~v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKL----FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHH----HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHH----HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHH
Confidence 676654443 34445433322 112344445566776544433 3444322 22122333444457788777
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH
Q 018882 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (349)
+..+++.-..... .+..-.+..+...+..|+. ++.+.+.+.|..++..
T Consensus 177 v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 177 MILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred HHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 7666665433221 1111111112223344553 4455566666655543
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=61.58 E-value=31 Score=24.61 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=8.7
Q ss_pred HHcCCChhHHHHHHH
Q 018882 37 YGRSGLFDKAFSLLE 51 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~ 51 (349)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345666666666554
No 285
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.91 E-value=60 Score=25.70 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=11.2
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 157 EKFQSAGIQPSINTFNILLDSYGK 180 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~ 180 (349)
+...+.+.+++......++..+..
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH
Confidence 333444555555555544444433
No 286
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=58.81 E-value=41 Score=23.10 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=23.6
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 018882 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
+.+.|.+++.. =..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34445444332 22233334444444555555555554433333333333334444443
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.26 E-value=43 Score=23.17 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=58.4
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHHHhccCcHHHHHHHHH
Q 018882 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLV 122 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 122 (349)
+++.+.|.....- +-|..-....+...-.. +.+.++|..|...|+-.. +..|......+-..|++.+|.++|+
T Consensus 52 Erc~~~f~~~~~Y---knD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKY---HNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGG---TTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccc---cCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555444333 55666655555443333 448889999999876544 4567777888888999999999999
Q ss_pred HHhccCCCcch
Q 018882 123 KMLSEDCEPDV 133 (349)
Q Consensus 123 ~~~~~~~~~~~ 133 (349)
.-++.+-.|-.
T Consensus 126 ~Gi~~~A~P~~ 136 (152)
T 4a1g_A 126 RGIQNQAEPRE 136 (152)
T ss_dssp HHHHTTCBSHH
T ss_pred HHHHcCCccHH
Confidence 99988777754
No 288
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=58.22 E-value=51 Score=24.01 Aligned_cols=92 Identities=9% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc-----HHHHHHHHHHHhccCCCcchhhHHHHH
Q 018882 69 LIKSCLKA---FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM-----FAEMELTLVKMLSEDCEPDVWTMNCTL 140 (349)
Q Consensus 69 ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (349)
+++++.++ .+.+.|+-++-+|++.| .|.-..-..++.+.-..|. ...|...++.....|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 018882 141 RAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~ 161 (349)
..++..-+-..+...++...+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.18 E-value=43 Score=23.14 Aligned_cols=64 Identities=14% Similarity=0.335 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCC
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD--LKQMEYLFRLMRSERIK 235 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 235 (349)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345666666667777777777666422211 22333333334433222 23455556665555543
No 290
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=58.09 E-value=41 Score=22.90 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=19.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3333334444555555555544433444444444444444443
No 291
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.19 E-value=65 Score=24.87 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=70.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCC--CcchhhHHHHHHHHHccCC
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 148 (349)
....+.|+++.+++....-++.. +-|...-..++..+|-.|+++.|.+-++...+... .|....|..+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~--- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH---
Confidence 34567788888888887777764 44777777888888888888888888877765531 2333455555553211
Q ss_pred HHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhc
Q 018882 149 IDTMEKCYEKFQSAGI-----QPSINTFNILLDSYG--KAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 197 (349)
=.++..-+- .....-...++.+.. ..|+.++|..+-..+.+.
T Consensus 81 -------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 -------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111222111 112334445555544 458888888887777543
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=56.94 E-value=63 Score=25.93 Aligned_cols=25 Identities=4% Similarity=0.275 Sum_probs=18.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 018882 136 MNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888877777664
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=56.91 E-value=43 Score=22.78 Aligned_cols=58 Identities=0% Similarity=-0.019 Sum_probs=26.4
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcC
Q 018882 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
+.+.|.+++.. =..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34455544432 22233344444445556666666655444444444333444444444
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.58 E-value=45 Score=22.89 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=34.4
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 193 YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+.+.|..++. --..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-.
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34555655432 33344555555556667777777776665555666655566666666554
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.51 E-value=61 Score=24.39 Aligned_cols=29 Identities=14% Similarity=-0.036 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
++.......+..+.+.|+.+.|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34445555566667777777777766443
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=55.82 E-value=43 Score=22.45 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHhcCCCCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018882 194 MQKYHYSWTIVTYNIVIDAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 33444443322 223334444444 455566666666555444455554444455554443
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.78 E-value=63 Score=24.31 Aligned_cols=90 Identities=13% Similarity=-0.058 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCC----chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018882 174 LLDSYGKAGHFEKMSAVMEYMQKY--HYSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 467777888888888888776542 1121 11111222222222222333444444442 2 3445556666677
Q ss_pred HHhcCChhhHHHHHHHHhh
Q 018882 248 YGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~ 266 (349)
+.+.|+.++|..+|-....
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777888877777765543
No 298
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=55.68 E-value=15 Score=20.53 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 018882 9 EKAHELFQAMVDEGCDANTQSFTALLSAY 37 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 37 (349)
++|.+.|-+|++..-.++..+|...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665443334445666666655
No 299
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=55.57 E-value=7.7 Score=21.76 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=19.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCH
Q 018882 40 SGLFDKAFSLLEHMKNTPDCQPDV 63 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~ 63 (349)
.-+++.|...|..+...+.+||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 458999999999998877777764
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.56 E-value=48 Score=22.90 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCC
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK--PEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 270 (349)
....++.-|...|+.++|...++++.... .....+...+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45667888888899999999998874211 1112233333344433222 33455666666655543
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=55.13 E-value=34 Score=23.35 Aligned_cols=59 Identities=7% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 228 LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445555555432 22333444444 55666666666655544454444444444444443
No 302
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=54.77 E-value=59 Score=23.64 Aligned_cols=93 Identities=12% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc-----HHHHHHHHHHHhccCCCcchhhHHHHH
Q 018882 69 LIKSCLKA---FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM-----FAEMELTLVKMLSEDCEPDVWTMNCTL 140 (349)
Q Consensus 69 ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (349)
+|+++.++ .+.+.|+-++-+|++.|-.|.-..-..++.+.-..|. ...|...++.....|.+--.......+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 018882 141 RAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~ 161 (349)
..++..-+-..+...++...+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.60 E-value=45 Score=22.24 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCC
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK--PEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 270 (349)
...++.-|...|+.++|...++++.... .-...+...+..++-+.++ .+....++..+...++-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566777777888888888888774211 1111222333333333322 23455566655555543
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=54.31 E-value=42 Score=22.52 Aligned_cols=62 Identities=6% Similarity=0.055 Sum_probs=36.2
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 228 LMRSERIKPSCVTLCSLVRAYGHAG-KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3455666666443 33455555555 56678888888877665556555555555555555443
No 305
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=53.85 E-value=51 Score=22.63 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=30.1
Q ss_pred HHhcCCCCchhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 194 MQKYHYSWTIVTYNIVIDAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44455543332 223334444444 4556666666666555445555555555555555543
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.83 E-value=13 Score=28.13 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=27.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHH--cCCChhHHHHHHHHh
Q 018882 4 KCKQPEKAHELFQAMVDEGCDANTQ-------SFTALLSAYG--RSGLFDKAFSLLEHM 53 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 53 (349)
+.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 14 ~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3566676667777776666555432 2233443332 556666666666543
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=53.74 E-value=41 Score=24.67 Aligned_cols=18 Identities=0% Similarity=-0.234 Sum_probs=9.1
Q ss_pred HHHhcCChhhHHHHHHHH
Q 018882 247 AYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~ 264 (349)
...+.|+.+-+..+++..
T Consensus 216 ~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHhh
Confidence 344556665555444443
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=53.71 E-value=47 Score=22.79 Aligned_cols=61 Identities=2% Similarity=0.026 Sum_probs=32.0
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCH
Q 018882 228 LMRSERIKPSCVTLCSLVRAYGHAG-KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3445565555432 23344444444 5556777777766655444555544445555555543
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=53.23 E-value=43 Score=22.83 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=34.4
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 193 YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-.
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344556654433 233344444445 567777777777666555666655556666666543
No 310
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.13 E-value=44 Score=24.63 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=13.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCC
Q 018882 71 KSCLKAFAFDKVQALLSDMSTQGIR 95 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~ 95 (349)
...+..|+.+.+..+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3445556666555555555444433
No 311
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.70 E-value=48 Score=22.07 Aligned_cols=65 Identities=14% Similarity=0.330 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 018882 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD--LKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 236 (349)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345666677777777777777776432221 22333334444444322 344566666666555433
No 312
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=52.10 E-value=35 Score=20.27 Aligned_cols=60 Identities=5% Similarity=0.102 Sum_probs=31.6
Q ss_pred HhhCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch
Q 018882 264 IDNSDIMLDTVFFNCLVDAYGRLK-CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324 (349)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 324 (349)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-.
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 344454444333 23444444443 4445666666666655555666666666666666543
No 313
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.92 E-value=77 Score=26.18 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCCCChhh--HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018882 13 ELFQAMVDEGCDANTQS--FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMS 90 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 90 (349)
++++.+.+.|..++... ....+...+..|+.+-+..+++.-.... ..+... .+.+...+..|+.+-+.-++
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g-~t~L~~A~~~g~~~~v~~Ll---- 100 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN--AKAKDD-QTPLHCAARIGHTNMVKLLL---- 100 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTS-CCHHHHHHHHTCHHHHHHHH----
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCC-CCHHHHHHHCCCHHHHHHHH----
Confidence 35555666665554321 1223444556677766655555422111 111111 12344455667765444443
Q ss_pred hcCCCCchHH--HHHHHHHHhccCcHHHHHHHHHH
Q 018882 91 TQGIRPNTVT--YNTLIDAYGRAKMFAEMELTLVK 123 (349)
Q Consensus 91 ~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 123 (349)
+.|..++... -...+...+..|+.+.+..+++.
T Consensus 101 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 3344333211 11223344455666655555543
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.67 E-value=47 Score=24.36 Aligned_cols=8 Identities=0% Similarity=0.106 Sum_probs=3.4
Q ss_pred HhcCChhH
Q 018882 74 LKAFAFDK 81 (349)
Q Consensus 74 ~~~~~~~~ 81 (349)
++.|+.+.
T Consensus 17 ~~~g~~~~ 24 (240)
T 3eu9_A 17 TQYGIYER 24 (240)
T ss_dssp HHTTCHHH
T ss_pred HHcCChHH
Confidence 34444443
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.47 E-value=55 Score=22.87 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=31.1
Q ss_pred HhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCh
Q 018882 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+.|.+++. --..++..+...++.-.|.++++.+.+. +...+..|.-.-+..+...|-.
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 445555432 2344455555555566666666666554 4444555554455555555543
No 316
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=51.46 E-value=27 Score=23.27 Aligned_cols=45 Identities=0% Similarity=-0.140 Sum_probs=22.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444445555566666666555444444444444444444443
No 317
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=51.26 E-value=25 Score=23.82 Aligned_cols=46 Identities=2% Similarity=-0.055 Sum_probs=23.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC
Q 018882 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
.++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444455555555666666666655544444444444444444443
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.25 E-value=56 Score=24.03 Aligned_cols=146 Identities=8% Similarity=-0.038 Sum_probs=62.1
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHH--HHHHHHHh
Q 018882 35 SAYGRSGLFDKAFSLLEHMKNTPDCQP---DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY--NTLIDAYG 109 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~ 109 (349)
...+..|+.+.+..+++.+.+.+ ..+ |..-. +.+...+..|+.+-+ +.+.+.|..++.... ...+...+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGG-RELDIYNNLRQ-TPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT-CCSCCCCTTSC-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCCcccccCC-CHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHH
Confidence 33455677776666666443321 112 11111 234445556665533 334445544432211 12333444
Q ss_pred ccCcHHHHHHHHHHHhccCCCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCC
Q 018882 110 RAKMFAEMELTLVKMLSEDCEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT---FNILLDSYGKAGH 183 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 183 (349)
..|+.+-+..+++.....+..+ +..-.+. +...+..|+.+ +++.+.+.|..++... -.+.+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 5666665555555543211111 1111222 23333445544 3444445554433211 1223344456677
Q ss_pred HHHHHHHH
Q 018882 184 FEKMSAVM 191 (349)
Q Consensus 184 ~~~a~~~~ 191 (349)
.+-+..++
T Consensus 163 ~~~v~~Ll 170 (241)
T 1k1a_A 163 LSMVQLLL 170 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444444
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.70 E-value=48 Score=23.18 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=8.1
Q ss_pred HHccCCHHHHHHHHHHHHhc
Q 018882 143 FGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~ 162 (349)
+...+..-.|.++++.+.+.
T Consensus 42 L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 42 LYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHSCCSCBCHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHhh
Confidence 33333333444444444433
No 320
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.88 E-value=1.2e+02 Score=25.50 Aligned_cols=55 Identities=5% Similarity=-0.132 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC-----hHHHHHHHHHHHhCCC
Q 018882 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD-----LKQMEYLFRLMRSERI 234 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 234 (349)
+.++.+.|...+..|.+.|..|....-..+..+.-.-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 456788888888888887776655555555555555453 2334555555555664
No 321
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.58 E-value=99 Score=24.43 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 018882 66 YSILIKSCLKAFAFDKVQALLSDMS 90 (349)
Q Consensus 66 ~~~ll~~~~~~~~~~~a~~~~~~~~ 90 (349)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456777777788888887777754
No 322
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=48.09 E-value=71 Score=22.68 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=14.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 018882 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
.+...+..++.+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33444445555444455555555555444
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=47.34 E-value=82 Score=23.17 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc-----HHHHHHHHHHHhccCCCcchhhHHHHH
Q 018882 69 LIKSCLKA---FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM-----FAEMELTLVKMLSEDCEPDVWTMNCTL 140 (349)
Q Consensus 69 ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (349)
+++++.++ .+++.|+-++-+|++.|-.|.-..-..++.+.-..|. ...|...++.....|.+--.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 018882 141 RAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~ 161 (349)
..++..-+-..+ ..++...+
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=46.86 E-value=32 Score=21.51 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018882 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 84 (349)
.+++.+.+.|+ .+..-...+-. .......++|.++++.+...+ ..+|..++.++...+....|..
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG-----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG-----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC-----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC-----hHHHHHHHHHHHHcCcHHHHHH
Confidence 36777777763 33333333221 101246888999999888763 3577888888877677665543
No 325
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.70 E-value=45 Score=22.19 Aligned_cols=47 Identities=11% Similarity=0.141 Sum_probs=30.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018882 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 44555555666677888888887766556666666666667666654
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.67 E-value=82 Score=22.94 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=16.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 279 LVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~m~~~ 302 (349)
.+..|.+.|.+++|.++|++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 345677888888888888876544
No 327
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.75 E-value=91 Score=23.22 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhhCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018882 255 EKLGSVLRFIDNSDIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 306 (349)
+....+|..|...++-. -...|......+-..|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 56778888887776543 35567778888888899999999998888887776
No 328
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=45.51 E-value=48 Score=21.66 Aligned_cols=68 Identities=10% Similarity=0.154 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018882 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 80 (349)
++.+|+.-+++..+. ++|......++..+-.. ++.++++.....+..|+ .+.++...+....+.|-.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 455566655555443 33444444444443322 44455555444433332 2334444555555554443
No 329
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.98 E-value=42 Score=22.69 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018882 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
..++..+...++.-.|.++++.+.+.+...+..|.-..+..+...|-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4455666666667778888888877766666666666667777666543
No 330
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.72 E-value=82 Score=22.12 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018882 152 MEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 152 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
...+|..|..+|+-. -...|......+-..|++.+|.++|..-.+.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344555555544332 23334444455555555555555555555544444
No 331
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.09 E-value=1.4e+02 Score=23.96 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhh
Q 018882 30 FTALLSAYGRSGLFDKAFSLLEHMK 54 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (349)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777777888888887777764
No 332
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.96 E-value=93 Score=24.85 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHH--HHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHH
Q 018882 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVT--YNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC 138 (349)
Q Consensus 61 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 138 (349)
.|..-++.| ...+..|+.+.+..++ +.|..++... -...+...+..|+.+-+..+++. |..++...-..
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV----GEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH----CCCCCCBTTBC
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCccccCCCC
Confidence 444444444 4445567766554444 4454443321 11233334445555444433333 22222211112
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018882 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
.+...+..|+.+-+..+++.....|..
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCC
Confidence 233344556665555555544444443
No 333
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=39.79 E-value=57 Score=24.75 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=10.0
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 018882 73 CLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~ 92 (349)
.++.|+.+.+..+++...+.
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~ 39 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRS 39 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHhhc
Confidence 34455555555555544443
No 334
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.67 E-value=1e+02 Score=22.11 Aligned_cols=61 Identities=11% Similarity=-0.000 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018882 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
++..+-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.+. +.+...+..+.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 34445555555555555533 2233333332 2344444555555555554 334444444433
No 335
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=39.27 E-value=68 Score=21.51 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=8.0
Q ss_pred HHHhcCChhHHHHHHHH
Q 018882 72 SCLKAFAFDKVQALLSD 88 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~ 88 (349)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33444555555444444
No 336
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.95 E-value=1.9e+02 Score=24.94 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-------hHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcc---
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-------TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD--- 132 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 132 (349)
...+|.+++.|...+.++.|..+..+.. ++.+ ..-+.-+.+.+.-.+++.+|.+.+...........
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~ 307 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL 307 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh
Q ss_pred ---hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018882 133 ---VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 133 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (349)
...+..++-+-.-.|++.+ ...+.+.+.......|..+..++ +.|+...-...++.
T Consensus 308 gfr~~a~K~lI~V~LLlG~iP~----r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 308 GFLQQSNKLHCCIQLLMGDIPE----LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC----HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHHhhcCCCCC----hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
No 337
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.73 E-value=1.1e+02 Score=22.22 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=29.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---------chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018882 175 LDSYGKAGHFEKMSAVMEYMQKYHYSW---------TIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+...+..|+.+.+..+++.+.+.|..+ +....+.+ ...+..|+.+-+..+++.-.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl-~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF-KLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHH-HHHHHcCCHHHHHHHHhcCc
Confidence 334456667766666666666655322 22223333 33345667666666665543
No 338
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=36.53 E-value=68 Score=21.15 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=49.9
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018882 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 80 (349)
+|.+++++++++.+.. ....|.-.|...+.+++.+-|.++++..... -+...|...+..|...=+++
T Consensus 15 ~ykkN~rw~qSI~L~K---------kDkLykDAietAa~S~d~elaEeLL~yFVe~----g~kEcF~A~LytCYdLlrpD 81 (125)
T 3qil_A 15 VPRGSHMWKQSVELAK---------KDSLYKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPD 81 (125)
T ss_dssp CSSSCCCCSSCCCCCS---------CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTS----CSHHHHHHHHHHHTTCSCTT
T ss_pred hhhccccHHHHHHHHH---------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHHhccChH
Confidence 3556666666554321 2334566677778888888888888888875 36777888888888877777
Q ss_pred HHHHH
Q 018882 81 KVQAL 85 (349)
Q Consensus 81 ~a~~~ 85 (349)
-++++
T Consensus 82 vVLEl 86 (125)
T 3qil_A 82 VVLEL 86 (125)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77654
No 339
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.91 E-value=71 Score=18.84 Aligned_cols=32 Identities=0% Similarity=-0.012 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHh
Q 018882 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
.-.+.++++.+.+.+...+..|....+..+..
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 33444555555443333333333333333333
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.35 E-value=2.2e+02 Score=24.23 Aligned_cols=90 Identities=9% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018882 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
...|..-...+...|++++|.++--...+ |+--+..|.+.+-..=..-|...-.+.+|..+.+.| ..+..---.+++.
T Consensus 361 d~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~ 438 (494)
T 1bpo_A 361 EELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRP 438 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHH
Confidence 33444445555556666665554433322 233344444444333333344444445555554444 2232222233344
Q ss_pred HHccCCHHHHHH
Q 018882 143 FGNSGQIDTMEK 154 (349)
Q Consensus 143 ~~~~~~~~~a~~ 154 (349)
-...|+.+-..+
T Consensus 439 vL~q~r~~llek 450 (494)
T 1bpo_A 439 VLQQGRKQLLEK 450 (494)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhccHHHHHHH
Confidence 444444444333
No 341
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.90 E-value=2.1e+02 Score=24.01 Aligned_cols=89 Identities=9% Similarity=-0.081 Sum_probs=49.1
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch
Q 018882 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC-----FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 324 (349)
+.++.+.|...+..|.+.|..|....-..++.+.-.-|. ...|...++.....|.+--.......+-.++.+-+-
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pks 346 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKS 346 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcc
Confidence 457888888888888888876665555555555544443 234555566666666432222232223333444444
Q ss_pred hhhHHHHHHHHHHh
Q 018882 325 NHAKEFQDLVEKMD 338 (349)
Q Consensus 325 ~~a~~~~~~~~~~~ 338 (349)
..+-..++...+.-
T Consensus 347 n~~~~a~~~a~~~~ 360 (447)
T 3pvs_A 347 NAVYTAFKAALADA 360 (447)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45555555444443
No 342
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.65 E-value=1.7e+02 Score=22.90 Aligned_cols=57 Identities=18% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 018882 32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV---NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
..+...++.|+++-+..+++.-. .+|. ..-.+-+...+..|+.+-+ +.+.+.|..++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Ga-----dvn~~~~~~g~TpLh~A~~~g~~~iv----~~Ll~~ga~~~ 86 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGA-----NVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred hHHHHHHHcCCHHHHHHHHHCCC-----CCCccCCCCCcCHHHHHHHcCCHHHH----HHHHHcCCchh
Confidence 34455667888887777765421 2221 1111234445667776544 44455554443
No 343
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.41 E-value=1.2e+02 Score=21.15 Aligned_cols=52 Identities=12% Similarity=-0.003 Sum_probs=33.2
Q ss_pred hcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 018882 250 HAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVD-A-----YGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 301 (349)
..|++-+|-++++.+-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4477777877777776554444 5556666666 2 2346777777777766554
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.38 E-value=3.1e+02 Score=25.84 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHH
Q 018882 311 YRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
|..++..+.+.+.++.+.++-+...
T Consensus 900 Y~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 900 YLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444555555555555554444433
No 345
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=33.34 E-value=44 Score=25.05 Aligned_cols=24 Identities=4% Similarity=-0.075 Sum_probs=13.3
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHh
Q 018882 315 VRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+...+..|..+-+..+++.-....
T Consensus 225 L~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCC
Confidence 344455677766666655544433
No 346
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=33.33 E-value=43 Score=24.30 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=15.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 018882 69 LIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.+..|.+.|.+++|.++|++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 345677788888888888776544
No 347
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.88 E-value=1.8e+02 Score=22.82 Aligned_cols=48 Identities=19% Similarity=0.016 Sum_probs=20.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018882 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (349)
++.|+.+- .+.+.+.|..++..+ .+ ...++.|+.+ +.+.+.+.|-.||
T Consensus 281 ~~~g~~~i----v~~Ll~~GAd~n~~~--~L-~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 281 VELKLKKI----AELLCKRGASTDCGD--LV-MTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHTTCHHH----HHHHHTTSCSSTTCC--HH-HHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHcCCHHH----HHHHHHCCCCCCCCC--HH-HHHHHcCCHH----HHHHHHHCcCCCC
Confidence 44555443 333345555555443 22 2334455543 3333444554443
No 348
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.91 E-value=3.5e+02 Score=25.35 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=10.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHh
Q 018882 102 NTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
..++.+++...+.....++++...
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 334444444444444444444433
No 349
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.71 E-value=1.5e+02 Score=20.98 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=78.7
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 018882 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
++...-...+..+...+..+....+. .+.. .++...-...+.++...++.+... .+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~~~-~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVE-PLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGHH-HHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHH-HHHHHHc---CCCHHHHHHHH
Confidence 44445555555666655533333333 3332 345555556666666666654333 3333332 24556666666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHH
Q 018882 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.++.+.++.+....+ ..+.. .++..+-...+.++...++.+.. ..+..+... ++..+-...+.++.+.|..
T Consensus 98 ~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~d---~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 98 VALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDERAV-EPLIKALKD---EDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTCGGGH-HHHHHHTTC---SSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHcC---CCHHHHHHHHHHHHHhCch-
Confidence 667766665433333 33332 34555556666667666665433 333333322 3555555666666666653
Q ss_pred HHHHHHHHHHh
Q 018882 291 EMKGVLEVMQQ 301 (349)
Q Consensus 291 ~a~~~~~~m~~ 301 (349)
++...+..+..
T Consensus 169 ~~~~~L~~~l~ 179 (201)
T 3ltj_A 169 RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34444554443
No 350
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=29.67 E-value=83 Score=18.01 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018882 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
.++.++..++...-.+.++..+.++.+.|. .+..+|..-++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 456667777777777778888888877763 46666666666665543
No 351
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=29.61 E-value=2.1e+02 Score=22.67 Aligned_cols=114 Identities=8% Similarity=0.035 Sum_probs=61.3
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH----HHhcCCHHHHHHHHHHH
Q 018882 224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA----YGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~m 299 (349)
++++.+.+.|+.|...++.-++..+...=.++.+.++|+.+...|...-..+.-+++.. ..+..++++...+++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 45566667777777777777777777666688888888887766643211111222222 12234666666666542
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCchhhhHHHHHHHHHHhhh
Q 018882 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 300 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.. ..+......++.-.......++..++-.....+++.
T Consensus 289 ~p---~~~~~di~~li~~A~~l~~s~~l~~~e~ey~~l~~~ 326 (331)
T 3qye_A 289 LP---NLGLVQMEKTINQVFEMDIAKQLQAYEVEYHVLQEE 326 (331)
T ss_dssp TT---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-
T ss_pred CC---CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 22 123444555554444444444444444444445544
No 352
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.55 E-value=3.6e+02 Score=25.31 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhcC----CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018882 172 NILLDSYGKAGH---FEKMSAVMEYMQKYH----YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 172 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
..++...|..|+ .+.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345566667665 345666776655431 334432 333333345566655555666665532 23334556
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 018882 245 VRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+.+++...+.+...++++.+...
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 77777777777777777776653
No 353
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=29.42 E-value=2e+02 Score=22.47 Aligned_cols=42 Identities=0% Similarity=-0.107 Sum_probs=21.0
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018882 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
+.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|
T Consensus 178 ~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 178 SHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 333444555555555545544444444555555555555444
No 354
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.37 E-value=69 Score=23.46 Aligned_cols=21 Identities=0% Similarity=-0.087 Sum_probs=12.9
Q ss_pred HHHHhcCChhhHHHHHHHHhh
Q 018882 246 RAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~ 266 (349)
......|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334556666677777766654
No 355
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.22 E-value=1.8e+02 Score=21.63 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=13.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 018882 210 IDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3445666777777777766654
No 356
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.99 E-value=1.6e+02 Score=20.64 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--cHHHHHHHHH-HH-----HhcCChhhHHHHHHHH
Q 018882 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKP--SCVTLCSLVR-AY-----GHAGKPEKLGSVLRFI 264 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~~-----~~~~~~~~a~~~~~~~ 264 (349)
|...+..| ..|++-+|-++++..-.....+ ....|..||+ .. .+.|+...|..++.+.
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444443 3478888888887775543344 4455666666 21 2345555555555543
No 357
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.98 E-value=1e+02 Score=22.91 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=17.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 018882 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 69 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
.+...+..|+.+.+..+++.+.+.|..++
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 34445666777766666666666655443
No 358
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.59 E-value=95 Score=21.76 Aligned_cols=24 Identities=8% Similarity=0.317 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 172 NILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555666666666666554
No 359
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.55 E-value=1.8e+02 Score=21.10 Aligned_cols=20 Identities=10% Similarity=-0.069 Sum_probs=10.5
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 018882 214 GRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~ 233 (349)
+..|+.+.+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 44555555555555555544
No 360
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.54 E-value=3.7e+02 Score=24.12 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=16.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018882 29 SFTALLSAYGRSGLFDKAFSLLEHMKN 55 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 55 (349)
.|. ++..|.++|++++|.++.++...
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGG
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhh
Confidence 443 34456677777777777766543
No 361
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.41 E-value=77 Score=17.25 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC--hhHHHHHHHHhh
Q 018882 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGL--FDKAFSLLEHMK 54 (349)
Q Consensus 10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 54 (349)
.-.+.++.+.+-|+++.. .-.++.+.|. ++.|++.+.+|.
T Consensus 8 vn~qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 8 VNRQMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp CCHHHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhc
Confidence 334567777777765532 2334444454 888888888774
No 362
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.05 E-value=2.6e+02 Score=22.93 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCCChhh--HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 018882 13 ELFQAMVDEGCDANTQS--FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLS 87 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 87 (349)
++++.+.+.|..++... -...+...+..|+.+-+.-+++.-... . ..+.... +.+...+..|+.+.+..+++
T Consensus 61 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~-~~~~~g~-t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 61 EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-N-LATTAGH-TPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-T-CCCTTCC-CHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC-C-CCCCCCC-cHHHHHHHcCCHHHHHHHHh
Confidence 34555555554443211 112333445566665554444432111 0 1121111 23344556667665555443
No 363
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.58 E-value=78 Score=20.88 Aligned_cols=51 Identities=8% Similarity=-0.015 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 018882 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
|.-.|...+.+++.+-|.++++...+.| +...|.+.+-.|...=+++.+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3344555555666666666666666554 44555555555555555555544
No 364
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.51 E-value=1.9e+02 Score=20.57 Aligned_cols=107 Identities=14% Similarity=0.054 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018882 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
+...-...+.++.+.++.+. ...+..+.. .++..+-...+.++...++.+. ...+..+.+ .++..+-...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHc---CCCHHHHHHHHH
Confidence 44444455555555555332 233333332 3455555555666666665443 333333332 234455555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018882 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 320 (349)
++.+.+. ..+...+..+.+. ++...-...+.++..
T Consensus 166 aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 6666655 3344444444442 244444444444433
No 365
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.35 E-value=1.9e+02 Score=20.39 Aligned_cols=29 Identities=3% Similarity=-0.072 Sum_probs=13.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHhccCCCcc
Q 018882 104 LIDAYGRAKMFAEMELTLVKMLSEDCEPD 132 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 132 (349)
.+...+..|+.+.-.++.+-+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33344445555444445555555554443
No 366
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=24.25 E-value=2.7e+02 Score=22.19 Aligned_cols=76 Identities=7% Similarity=0.057 Sum_probs=53.2
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-HHHH--HHHHHH----HHhcCCHHHHHHHH
Q 018882 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS-INTF--NILLDS----YGKAGHFEKMSAVM 191 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~l~~~----~~~~~~~~~a~~~~ 191 (349)
+++..+.+.++.|...++.-++..+.+.=.++.+.++|+.+...|.... ...+ .+++.. .....++++....+
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4556666678888888888888888888889999999999998875433 2222 222322 23357888888777
Q ss_pred HHH
Q 018882 192 EYM 194 (349)
Q Consensus 192 ~~~ 194 (349)
..+
T Consensus 310 ~~~ 312 (345)
T 2qfz_A 310 QNL 312 (345)
T ss_dssp TSC
T ss_pred HcC
Confidence 654
No 367
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.16 E-value=2.7e+02 Score=23.48 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018882 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
..+.+...|.+.++...+..+++.+...+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~ 207 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSM 207 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCC
Confidence 456667777777888888877777766554
No 368
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.87 E-value=1.4e+02 Score=20.96 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=9.9
Q ss_pred HHHHHhccCcHHHHHHHHHHH
Q 018882 104 LIDAYGRAKMFAEMELTLVKM 124 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~ 124 (349)
++.-|...++.++|...++++
T Consensus 16 ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 16 IIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444555555444444
No 369
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.85 E-value=2.2e+02 Score=20.53 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=9.5
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 018882 70 IKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 70 l~~~~~~~~~~~a~~~~~~ 88 (349)
+...+..|+.+.+..++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444455555555555443
No 370
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.78 E-value=1.4e+02 Score=18.47 Aligned_cols=28 Identities=7% Similarity=-0.159 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018882 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 300 (349)
...+.-....+.+.|++++|++..+...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455667777888888888887765443
No 371
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.70 E-value=2.2e+02 Score=20.51 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=29.2
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 018882 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
+...+..|+++....+++.-..... .++....+ .+...+..|+.+-+.. +.+.|..++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t-~L~~A~~~g~~~~v~~----Ll~~g~~~~ 67 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLAT-RTDQDSRT-ALHWACSAGHTEIVEF----LLQLGVPVN 67 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGG-CCCTTSCC-HHHHHHHHTCHHHHHH----HHHTTCCSC
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhh-cCCCCCCC-HHHHHHHcCcHHHHHH----HHHhCCCCC
Confidence 4455667888888777765432111 12222222 3444556666654443 344454443
No 372
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.49 E-value=3.1e+02 Score=21.73 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=47.0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 018882 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
|..-++.|. ..+..|+.+-+..+++.-... . ..|..-. +.+...+..|+.+-+..+ .+.|..++...-...+
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~~Ll~~g~~~-~-~~d~~g~-t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L 88 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVRRLIETGVSP-T-IQNRFGC-TALHLACKFGCVDTAKYL----ASVGEVHSLWHGQKPI 88 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHHHHHHTTCCT-T-CCCTTCC-CHHHHHHHHCCHHHHHHH----HHHCCCCCCBTTBCHH
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHHHcCCCc-c-ccCCCCC-cHHHHHHHcCCHHHHHHH----HHCCCCccccCCCCHH
Confidence 444444444 445678877666666532111 0 1222222 344555667777655444 4444443332222234
Q ss_pred HHHhccCcHHHHHHHHHHHhccC
Q 018882 106 DAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
...+..|+.+-+..+++.....+
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHhccccC
Confidence 44556677777777766644333
No 373
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.36 E-value=1.2e+02 Score=16.90 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=10.4
Q ss_pred cCCChhHHHHHHHHhhcC
Q 018882 39 RSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~ 56 (349)
..|+.+.|+..+-.|...
T Consensus 35 ~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp TTTCHHHHHHHHHHSSCC
T ss_pred cCCCHHHHHHHHHcCcCC
Confidence 345666666666665543
No 374
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.24 E-value=1.8e+02 Score=19.02 Aligned_cols=42 Identities=5% Similarity=-0.088 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhccCcHHHHHHHHHHHhc
Q 018882 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
+|+.+....+.|+...--.-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444433332222223333455666666666655553
No 375
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.15 E-value=1.4e+02 Score=17.79 Aligned_cols=33 Identities=6% Similarity=0.052 Sum_probs=23.5
Q ss_pred CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhh
Q 018882 22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMK 54 (349)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (349)
+++|++.+|+-+..++-+..-..++..+...+.
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468899999998887766555566666665543
No 376
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.08 E-value=1.4e+02 Score=21.12 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 018882 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
|....++.++..++...-.+.++..+.+....|. .+..+|..-++.+++...
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF 160 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQF 160 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 4455667788888887778888888888887774 467777766776666443
No 377
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.84 E-value=3.9e+02 Score=22.74 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 018882 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
.+.+-|.++- .+.|++--...|..-.+.+...|++++|.++--...+.-+ -+..|.+.+-..=...|...-.+.+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giL-Rt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGIL-RTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSS-CSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccc-cCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 4455444433 2334444444555556666677777777666544333222 24555544444333444555555555
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018882 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
..+.+.| ..+..--..+++.-...|+.+...+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 5555544 33332223344444444554443333
No 378
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.48 E-value=2.3e+02 Score=23.98 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=47.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH--------HHHH-HHHHHHHhcCCHHHHHHHHHHHHhc
Q 018882 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI--------NTFN-ILLDSYGKAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (349)
..+.+++.|.+.++...+..+++.+...+..|+. .+|. .+.+.+...+++.+|.+.+....+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4577889999999999999999998887653332 2333 3455667889999999888776554
Done!