Query 018883
Match_columns 349
No_of_seqs 694 out of 1374
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 07:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.6E-35 3.3E-39 248.3 23.7 185 136-320 29-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 2E-34 6.8E-39 246.3 24.4 204 46-250 9-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.4E-32 4.7E-37 243.8 34.9 236 97-337 304-545 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.1E-32 3.6E-37 244.5 32.8 329 2-340 210-582 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-28 9.2E-33 204.8 37.2 325 5-339 46-370 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1E-27 3.5E-32 201.3 36.8 326 3-338 10-335 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 4.9E-25 1.7E-29 188.7 35.2 322 9-339 9-360 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 1.6E-24 5.6E-29 185.4 36.1 302 2-315 36-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 5.5E-24 1.9E-28 185.2 30.8 329 2-339 16-446 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 6.9E-22 2.4E-26 163.8 36.9 291 4-302 15-335 (359)
11 3ieg_A DNAJ homolog subfamily 99.9 6.6E-22 2.3E-26 163.9 36.2 307 26-340 2-338 (359)
12 2gw1_A Mitochondrial precursor 99.9 4.2E-23 1.4E-27 179.6 29.8 332 2-340 49-481 (514)
13 3fp2_A TPR repeat-containing p 99.9 2.8E-22 9.7E-27 175.4 33.8 330 2-340 35-494 (537)
14 3hym_B Cell division cycle pro 99.9 6.9E-22 2.4E-26 161.9 31.0 295 23-325 18-322 (330)
15 1fch_A Peroxisomal targeting s 99.9 7.9E-22 2.7E-26 164.2 26.0 295 37-336 35-358 (368)
16 3hym_B Cell division cycle pro 99.9 9.2E-21 3.2E-25 155.2 30.2 280 3-290 33-322 (330)
17 1fch_A Peroxisomal targeting s 99.9 3.6E-21 1.2E-25 160.2 25.6 288 5-298 38-355 (368)
18 3fp2_A TPR repeat-containing p 99.9 1.4E-19 4.8E-24 158.3 32.8 307 26-341 24-411 (537)
19 4eqf_A PEX5-related protein; a 99.9 2.9E-21 9.8E-26 160.7 20.9 267 62-333 64-352 (365)
20 4eqf_A PEX5-related protein; a 99.9 3E-20 1E-24 154.5 25.9 267 26-298 64-352 (365)
21 3cv0_A Peroxisome targeting si 99.9 1.1E-19 3.9E-24 148.5 27.7 265 26-297 20-310 (327)
22 3cv0_A Peroxisome targeting si 99.9 1.9E-19 6.6E-24 147.1 25.0 274 62-341 20-319 (327)
23 1b89_A Protein (clathrin heavy 99.9 1.8E-20 6.2E-25 153.7 15.9 284 2-330 13-304 (449)
24 3mkr_A Coatomer subunit epsilo 99.8 2.5E-18 8.7E-23 137.7 27.4 251 35-302 7-264 (291)
25 3mkr_A Coatomer subunit epsilo 99.8 3.1E-18 1.1E-22 137.1 25.9 255 70-340 6-267 (291)
26 2xm6_A Protein corresponding t 99.8 6.9E-16 2.4E-20 133.3 42.1 305 6-338 93-433 (490)
27 2xm6_A Protein corresponding t 99.8 7E-16 2.4E-20 133.3 41.5 305 5-337 56-396 (490)
28 2ooe_A Cleavage stimulation fa 99.8 1.1E-15 3.8E-20 133.3 38.0 329 4-339 24-494 (530)
29 3spa_A Mtrpol, DNA-directed RN 99.8 1.3E-19 4.5E-24 160.5 12.7 115 168-282 127-245 (1134)
30 3spa_A Mtrpol, DNA-directed RN 99.8 6.7E-20 2.3E-24 162.3 10.0 135 202-343 126-264 (1134)
31 4g1t_A Interferon-induced prot 99.8 1.9E-16 6.5E-21 136.2 30.7 334 2-340 61-462 (472)
32 3uq3_A Heat shock protein STI1 99.8 2E-16 6.7E-21 124.7 25.0 224 65-302 7-236 (258)
33 2pl2_A Hypothetical conserved 99.8 8.8E-17 3E-21 123.2 22.1 199 24-229 2-211 (217)
34 1b89_A Protein (clathrin heavy 99.8 3.4E-18 1.2E-22 140.3 14.4 251 39-333 15-265 (449)
35 3uq3_A Heat shock protein STI1 99.8 2E-16 6.8E-21 124.6 24.2 230 97-340 4-239 (258)
36 2pl2_A Hypothetical conserved 99.8 1.4E-16 4.9E-21 122.0 21.4 112 182-297 98-209 (217)
37 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.7E-16 1.3E-20 124.3 21.1 223 99-331 44-269 (275)
38 3u4t_A TPR repeat-containing p 99.7 9.2E-16 3.2E-20 121.9 23.2 164 136-302 77-250 (272)
39 2ooe_A Cleavage stimulation fa 99.7 3.1E-14 1.1E-18 124.2 34.5 141 15-161 2-158 (530)
40 3u4t_A TPR repeat-containing p 99.7 2E-15 6.8E-20 120.0 24.6 239 98-340 3-253 (272)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.5E-16 5E-21 126.7 17.7 247 4-296 17-269 (275)
42 1ouv_A Conserved hypothetical 99.7 2.6E-14 8.8E-19 113.6 30.6 224 26-268 5-252 (273)
43 1ouv_A Conserved hypothetical 99.7 3.5E-14 1.2E-18 112.9 30.7 225 61-303 4-252 (273)
44 4g1t_A Interferon-induced prot 99.7 4.1E-14 1.4E-18 121.6 33.5 309 25-338 49-402 (472)
45 2h6f_A Protein farnesyltransfe 99.7 3.1E-15 1.1E-19 123.8 25.0 196 28-229 98-302 (382)
46 2ho1_A Type 4 fimbrial biogene 99.7 1.1E-14 3.8E-19 114.3 26.6 200 27-231 37-237 (252)
47 2vq2_A PILW, putative fimbrial 99.7 7.7E-15 2.6E-19 112.9 24.9 164 136-301 45-210 (225)
48 2vq2_A PILW, putative fimbrial 99.7 1.2E-14 4E-19 111.9 25.7 204 25-232 6-211 (225)
49 2ho1_A Type 4 fimbrial biogene 99.7 8.3E-15 2.8E-19 115.0 25.3 198 101-302 40-238 (252)
50 2q7f_A YRRB protein; TPR, prot 99.7 1.6E-15 5.5E-20 118.3 20.7 201 26-232 22-222 (243)
51 2h6f_A Protein farnesyltransfe 99.7 1E-14 3.6E-19 120.6 26.4 248 63-319 97-364 (382)
52 2q7f_A YRRB protein; TPR, prot 99.7 1.9E-15 6.3E-20 118.0 20.9 198 100-302 25-222 (243)
53 3sf4_A G-protein-signaling mod 99.7 4.8E-16 1.6E-20 130.9 18.8 300 25-326 7-365 (406)
54 4a1s_A PINS, partner of inscut 99.7 4.5E-15 1.5E-19 125.3 19.8 272 29-302 50-372 (411)
55 4a1s_A PINS, partner of inscut 99.7 4.1E-15 1.4E-19 125.5 19.1 274 64-338 49-373 (411)
56 3sf4_A G-protein-signaling mod 99.7 1.1E-14 3.8E-19 122.5 20.7 279 60-339 6-338 (406)
57 1xi4_A Clathrin heavy chain; a 99.7 6.3E-13 2.2E-17 122.3 32.2 268 2-320 1059-1326(1630)
58 3ulq_A Response regulator aspa 99.7 5E-14 1.7E-18 117.7 23.6 234 104-340 109-371 (383)
59 3ro2_A PINS homolog, G-protein 99.7 1E-14 3.5E-19 119.3 19.0 199 29-229 7-249 (338)
60 2ond_A Cleavage stimulation fa 99.7 3.4E-13 1.2E-17 109.1 27.3 236 63-302 8-270 (308)
61 1xi4_A Clathrin heavy chain; a 99.7 1.4E-12 4.9E-17 119.9 33.6 280 5-329 1089-1376(1630)
62 3ulq_A Response regulator aspa 99.6 6.8E-14 2.3E-18 116.9 23.1 295 3-302 23-368 (383)
63 3ro2_A PINS homolog, G-protein 99.6 1.1E-14 3.8E-19 119.1 17.6 276 64-340 6-335 (338)
64 3vtx_A MAMA; tetratricopeptide 99.6 2.2E-13 7.6E-18 101.4 22.2 166 133-302 5-170 (184)
65 4abn_A Tetratricopeptide repea 99.6 5.3E-14 1.8E-18 120.6 21.0 216 42-264 83-318 (474)
66 2ond_A Cleavage stimulation fa 99.6 7.2E-13 2.5E-17 107.2 26.6 217 9-232 33-270 (308)
67 3e4b_A ALGK; tetratricopeptide 99.6 4E-13 1.4E-17 114.4 25.0 302 4-336 15-386 (452)
68 3e4b_A ALGK; tetratricopeptide 99.6 3.9E-14 1.3E-18 120.7 18.7 281 32-336 8-350 (452)
69 3nf1_A KLC 1, kinesin light ch 99.6 7.2E-15 2.5E-19 119.0 13.0 170 62-231 26-223 (311)
70 3vtx_A MAMA; tetratricopeptide 99.6 4.6E-13 1.6E-17 99.7 21.8 169 167-339 4-172 (184)
71 3nf1_A KLC 1, kinesin light ch 99.6 2.8E-14 9.6E-19 115.5 16.0 172 26-197 26-224 (311)
72 4abn_A Tetratricopeptide repea 99.6 1.5E-13 5.3E-18 117.7 20.7 216 78-300 83-319 (474)
73 1hz4_A MALT regulatory protein 99.6 1.2E-11 4.1E-16 102.9 28.5 302 29-339 16-351 (373)
74 3q15_A PSP28, response regulat 99.6 4.3E-12 1.5E-16 105.8 24.9 316 24-342 7-370 (378)
75 3q15_A PSP28, response regulat 99.5 6.3E-12 2.2E-16 104.8 23.9 295 3-302 23-365 (378)
76 1hz4_A MALT regulatory protein 99.5 2.8E-11 9.7E-16 100.6 27.6 264 4-267 26-322 (373)
77 4gyw_A UDP-N-acetylglucosamine 99.5 2.4E-12 8.2E-17 114.9 22.1 165 133-301 9-173 (723)
78 3as5_A MAMA; tetratricopeptide 99.5 5.5E-12 1.9E-16 93.6 19.8 166 170-339 10-175 (186)
79 3as5_A MAMA; tetratricopeptide 99.5 5.5E-12 1.9E-16 93.6 19.1 166 27-197 8-173 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.5 8.1E-12 2.8E-16 111.5 20.7 166 97-266 8-173 (723)
81 4i17_A Hypothetical protein; T 99.5 6.1E-11 2.1E-15 91.3 23.2 196 96-302 5-209 (228)
82 3edt_B KLC 2, kinesin light ch 99.5 2E-12 6.8E-17 103.0 14.8 229 3-232 12-281 (283)
83 3edt_B KLC 2, kinesin light ch 99.4 5.3E-12 1.8E-16 100.5 16.9 30 272-301 251-280 (283)
84 4i17_A Hypothetical protein; T 99.4 3.4E-11 1.1E-15 92.8 20.5 199 131-340 5-212 (228)
85 4e6h_A MRNA 3'-END-processing 99.4 5.4E-09 1.9E-13 92.5 34.5 120 5-125 79-221 (679)
86 1qqe_A Vesicular transport pro 99.4 4.1E-11 1.4E-15 96.0 17.9 207 78-299 32-266 (292)
87 3mv2_B Coatomer subunit epsilo 99.3 1.3E-09 4.5E-14 86.0 23.2 244 34-302 20-282 (310)
88 3mv2_B Coatomer subunit epsilo 99.3 2.6E-09 8.9E-14 84.3 24.6 60 102-161 104-164 (310)
89 4e6h_A MRNA 3'-END-processing 99.3 1E-08 3.4E-13 90.8 30.8 206 133-340 343-573 (679)
90 3qky_A Outer membrane assembly 99.3 5.9E-10 2E-14 87.7 20.0 187 25-232 13-224 (261)
91 1qqe_A Vesicular transport pro 99.3 5.5E-10 1.9E-14 89.4 19.7 159 143-301 47-227 (292)
92 3urz_A Uncharacterized protein 99.3 6.4E-10 2.2E-14 84.3 19.0 132 174-311 60-193 (208)
93 3qky_A Outer membrane assembly 99.3 6.8E-10 2.3E-14 87.4 19.6 186 97-302 14-224 (261)
94 2fo7_A Synthetic consensus TPR 99.3 4.4E-10 1.5E-14 78.4 15.9 129 29-161 3-131 (136)
95 2fo7_A Synthetic consensus TPR 99.3 9E-10 3.1E-14 76.8 17.4 126 173-301 6-131 (136)
96 2pzi_A Probable serine/threoni 99.3 3.8E-10 1.3E-14 101.1 18.2 174 109-288 402-583 (681)
97 2pzi_A Probable serine/threoni 99.2 4.7E-10 1.6E-14 100.5 18.0 173 144-323 402-583 (681)
98 3dra_A Protein farnesyltransfe 99.2 8.2E-08 2.8E-12 76.5 28.5 217 80-301 50-286 (306)
99 3rjv_A Putative SEL1 repeat pr 99.2 3.8E-09 1.3E-13 80.2 20.0 176 10-198 4-198 (212)
100 3urz_A Uncharacterized protein 99.2 2.1E-09 7.2E-14 81.4 18.2 187 64-277 5-194 (208)
101 3dra_A Protein farnesyltransfe 99.2 4.9E-08 1.7E-12 77.7 26.3 236 38-280 43-300 (306)
102 4ga2_A E3 SUMO-protein ligase 99.2 8.5E-10 2.9E-14 78.8 13.8 122 107-231 6-128 (150)
103 4ga2_A E3 SUMO-protein ligase 99.2 5.1E-10 1.7E-14 79.9 12.0 142 142-287 6-148 (150)
104 3qou_A Protein YBBN; thioredox 99.2 4.1E-09 1.4E-13 84.1 18.3 166 165-334 114-281 (287)
105 3rjv_A Putative SEL1 repeat pr 99.2 8.1E-09 2.8E-13 78.4 19.0 159 136-303 21-198 (212)
106 2r5s_A Uncharacterized protein 99.2 1E-09 3.5E-14 80.7 13.5 60 273-332 108-168 (176)
107 3qou_A Protein YBBN; thioredox 99.1 3.8E-09 1.3E-13 84.3 17.5 179 115-301 103-283 (287)
108 2vsy_A XCC0866; transferase, g 99.1 1.4E-09 4.7E-14 95.7 16.2 154 5-163 2-158 (568)
109 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.1E-08 3.8E-13 78.4 19.3 186 27-233 4-214 (225)
110 2r5s_A Uncharacterized protein 99.1 2E-09 6.9E-14 79.1 14.4 164 134-301 7-172 (176)
111 2uy1_A Cleavage stimulation fa 99.1 1.9E-07 6.5E-12 80.1 28.5 47 150-197 196-242 (493)
112 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.1E-08 7.3E-13 76.8 20.6 206 99-341 5-217 (225)
113 2vsy_A XCC0866; transferase, g 99.1 8.2E-09 2.8E-13 90.8 20.6 153 147-303 3-158 (568)
114 2uy1_A Cleavage stimulation fa 99.1 3.6E-07 1.2E-11 78.4 30.0 311 6-336 28-412 (493)
115 2ifu_A Gamma-SNAP; membrane fu 99.1 3.2E-09 1.1E-13 85.6 16.1 61 240-300 157-222 (307)
116 2ifu_A Gamma-SNAP; membrane fu 99.1 3.4E-09 1.2E-13 85.4 16.0 200 4-230 3-222 (307)
117 3u3w_A Transcriptional activat 99.0 2.5E-07 8.6E-12 73.9 23.6 166 174-339 81-268 (293)
118 3q7a_A Farnesyltransferase alp 99.0 1.1E-06 3.8E-11 70.8 25.8 247 33-302 60-331 (349)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.0 7.7E-08 2.6E-12 72.9 18.2 128 136-268 9-151 (213)
120 3u3w_A Transcriptional activat 99.0 5.4E-08 1.8E-12 77.9 18.1 209 13-231 32-265 (293)
121 3q7a_A Farnesyltransferase alp 99.0 1.3E-06 4.3E-11 70.5 25.5 240 74-335 65-329 (349)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.1E-07 3.7E-12 72.1 18.5 130 99-233 7-151 (213)
123 2qfc_A PLCR protein; TPR, HTH, 99.0 5.5E-07 1.9E-11 72.0 23.0 167 135-301 77-265 (293)
124 2qfc_A PLCR protein; TPR, HTH, 99.0 5.1E-07 1.8E-11 72.2 22.6 171 169-339 76-268 (293)
125 1a17_A Serine/threonine protei 99.0 8E-08 2.7E-12 69.5 16.4 133 204-339 14-148 (166)
126 3gw4_A Uncharacterized protein 98.9 3.8E-08 1.3E-12 73.9 14.4 158 144-302 3-176 (203)
127 2e2e_A Formate-dependent nitri 98.9 1.9E-08 6.6E-13 73.9 12.0 123 2-128 20-145 (177)
128 1a17_A Serine/threonine protei 98.9 1.5E-07 5.2E-12 68.0 16.3 129 169-300 14-144 (166)
129 2c2l_A CHIP, carboxy terminus 98.9 1.3E-08 4.5E-13 80.9 10.7 194 26-231 3-198 (281)
130 4gco_A Protein STI-1; structur 98.9 1.2E-07 4.1E-12 65.2 14.2 96 205-302 15-110 (126)
131 3gw4_A Uncharacterized protein 98.9 3E-08 1E-12 74.5 12.0 121 4-125 4-134 (203)
132 4gco_A Protein STI-1; structur 98.9 1.5E-07 5.1E-12 64.7 14.5 95 135-231 15-109 (126)
133 3gyz_A Chaperone protein IPGC; 98.9 1E-07 3.4E-12 67.7 13.9 97 204-302 37-133 (151)
134 2c2l_A CHIP, carboxy terminus 98.9 6.1E-08 2.1E-12 77.0 14.1 194 98-301 4-198 (281)
135 4f3v_A ESX-1 secretion system 98.9 2.1E-07 7.4E-12 72.5 16.6 127 103-232 107-237 (282)
136 1na0_A Designed protein CTPR3; 98.9 2E-07 6.7E-12 63.7 14.8 98 203-302 9-106 (125)
137 2lni_A Stress-induced-phosphop 98.8 1.2E-07 4E-12 65.7 13.5 99 26-127 15-113 (133)
138 2vyi_A SGTA protein; chaperone 98.8 2.2E-07 7.4E-12 64.1 14.5 118 203-323 12-129 (131)
139 1na0_A Designed protein CTPR3; 98.8 3.7E-07 1.3E-11 62.3 15.4 92 137-230 13-104 (125)
140 2lni_A Stress-induced-phosphop 98.8 2.7E-07 9.2E-12 63.9 14.9 60 65-125 18-77 (133)
141 3gyz_A Chaperone protein IPGC; 98.8 1.5E-07 5E-12 66.9 13.2 99 168-268 36-134 (151)
142 2vyi_A SGTA protein; chaperone 98.8 2.8E-07 9.5E-12 63.5 14.5 89 139-229 18-106 (131)
143 4f3v_A ESX-1 secretion system 98.8 4.6E-07 1.6E-11 70.6 16.9 129 171-302 105-237 (282)
144 2e2e_A Formate-dependent nitri 98.8 7.2E-08 2.5E-12 70.8 12.0 119 181-302 23-144 (177)
145 2vgx_A Chaperone SYCD; alterna 98.8 8.6E-08 2.9E-12 68.1 11.7 99 202-302 20-118 (148)
146 1p5q_A FKBP52, FK506-binding p 98.8 2.5E-07 8.4E-12 75.5 15.7 132 167-300 146-292 (336)
147 2vgx_A Chaperone SYCD; alterna 98.8 4.3E-08 1.5E-12 69.6 9.9 113 225-340 9-121 (148)
148 1p5q_A FKBP52, FK506-binding p 98.8 4.4E-07 1.5E-11 74.0 16.3 130 202-333 146-290 (336)
149 3dss_A Geranylgeranyl transfer 98.8 2E-05 7E-10 63.2 25.4 136 75-214 41-190 (331)
150 3upv_A Heat shock protein STI1 98.7 9.1E-07 3.1E-11 60.7 13.7 97 204-302 5-101 (126)
151 2kck_A TPR repeat; tetratricop 98.7 6.4E-07 2.2E-11 59.7 12.4 101 25-128 4-107 (112)
152 3upv_A Heat shock protein STI1 98.7 1.3E-06 4.4E-11 59.9 14.1 94 171-266 7-100 (126)
153 1elw_A TPR1-domain of HOP; HOP 98.7 2.2E-06 7.5E-11 57.6 14.9 97 204-302 5-101 (118)
154 1elw_A TPR1-domain of HOP; HOP 98.7 3E-06 1E-10 56.9 15.4 95 135-231 6-100 (118)
155 4gcn_A Protein STI-1; structur 98.7 9.4E-07 3.2E-11 60.8 12.8 104 205-311 10-119 (127)
156 2xcb_A PCRH, regulatory protei 98.6 8.1E-07 2.8E-11 62.5 12.6 99 202-302 17-115 (142)
157 2fbn_A 70 kDa peptidylprolyl i 98.6 1.2E-07 4.1E-12 71.0 8.4 88 239-328 89-176 (198)
158 3q49_B STIP1 homology and U bo 98.6 1.6E-06 5.5E-11 60.4 13.5 100 201-302 7-106 (137)
159 2xcb_A PCRH, regulatory protei 98.6 8.5E-07 2.9E-11 62.4 11.9 99 167-267 17-115 (142)
160 4gcn_A Protein STI-1; structur 98.6 8.4E-07 2.9E-11 61.0 11.2 99 27-127 8-112 (127)
161 3sz7_A HSC70 cochaperone (SGT) 98.6 2.3E-06 7.7E-11 61.8 13.9 97 204-302 12-108 (164)
162 1elr_A TPR2A-domain of HOP; HO 98.6 1.1E-06 3.6E-11 60.5 11.7 110 204-316 5-120 (131)
163 2fbn_A 70 kDa peptidylprolyl i 98.6 2.1E-06 7.1E-11 64.2 14.1 129 171-301 41-185 (198)
164 2dba_A Smooth muscle cell asso 98.6 3.5E-06 1.2E-10 59.3 14.6 98 26-127 27-128 (148)
165 3q49_B STIP1 homology and U bo 98.6 3.7E-06 1.3E-10 58.4 14.5 101 165-267 6-106 (137)
166 3sz7_A HSC70 cochaperone (SGT) 98.6 1.3E-06 4.3E-11 63.2 12.2 103 236-340 9-111 (164)
167 4b4t_Q 26S proteasome regulato 98.6 1.7E-05 5.9E-10 67.0 21.1 197 105-301 11-244 (434)
168 2kck_A TPR repeat; tetratricop 98.6 1.4E-06 4.6E-11 58.1 11.4 25 276-300 79-104 (112)
169 4b4t_Q 26S proteasome regulato 98.5 5.5E-06 1.9E-10 70.1 17.4 197 34-230 11-243 (434)
170 2dba_A Smooth muscle cell asso 98.5 9.5E-06 3.2E-10 57.1 15.5 60 136-196 68-127 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.5 8.6E-07 2.9E-11 61.0 9.6 99 27-127 4-108 (131)
172 1hxi_A PEX5, peroxisome target 98.5 1.5E-06 5.2E-11 59.1 10.6 92 208-301 22-113 (121)
173 3dss_A Geranylgeranyl transfer 98.5 0.00024 8.2E-09 57.0 27.7 183 27-215 26-239 (331)
174 1wao_1 Serine/threonine protei 98.5 7.9E-07 2.7E-11 76.1 10.6 117 2-122 16-134 (477)
175 1hxi_A PEX5, peroxisome target 98.5 2.2E-06 7.4E-11 58.4 10.7 95 242-338 21-115 (121)
176 3k9i_A BH0479 protein; putativ 98.5 4.5E-07 1.6E-11 61.4 7.2 87 4-92 2-90 (117)
177 1wao_1 Serine/threonine protei 98.4 5.5E-07 1.9E-11 77.1 8.5 119 176-297 14-134 (477)
178 3ro3_A PINS homolog, G-protein 98.4 1.7E-06 5.7E-11 62.0 9.8 64 275-338 91-159 (164)
179 3ro3_A PINS homolog, G-protein 98.4 4E-06 1.4E-10 59.9 11.8 133 170-302 11-158 (164)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1E-05 3.6E-10 68.9 14.7 132 167-300 267-413 (457)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 7.9E-06 2.7E-10 69.6 13.6 126 202-329 267-406 (457)
182 1ihg_A Cyclophilin 40; ppiase 98.4 9.1E-06 3.1E-10 67.1 13.5 91 237-329 272-362 (370)
183 2xev_A YBGF; tetratricopeptide 98.4 1.9E-05 6.5E-10 54.1 13.2 93 209-302 8-105 (129)
184 3k9i_A BH0479 protein; putativ 98.3 1.7E-06 5.6E-11 58.5 7.5 86 216-302 3-90 (117)
185 1dce_A Protein (RAB geranylger 98.3 0.00012 4.1E-09 64.0 20.7 174 148-326 44-244 (567)
186 3rkv_A Putative peptidylprolyl 98.3 1.3E-05 4.5E-10 57.6 12.4 64 238-302 63-126 (162)
187 1ihg_A Cyclophilin 40; ppiase 98.3 1.4E-05 4.7E-10 66.0 13.8 123 170-294 225-362 (370)
188 2xev_A YBGF; tetratricopeptide 98.3 5.8E-05 2E-09 51.6 14.9 89 141-231 10-104 (129)
189 2hr2_A Hypothetical protein; a 98.3 1.9E-05 6.5E-10 55.6 11.7 65 275-339 59-133 (159)
190 3rkv_A Putative peptidylprolyl 98.3 1.6E-05 5.5E-10 57.1 12.0 65 203-268 63-127 (162)
191 2if4_A ATFKBP42; FKBP-like, al 98.2 7.1E-06 2.4E-10 66.9 9.9 149 27-197 179-328 (338)
192 1dce_A Protein (RAB geranylger 98.2 0.00017 5.8E-09 63.0 18.8 175 41-221 43-244 (567)
193 2if4_A ATFKBP42; FKBP-like, al 98.2 8.3E-06 2.8E-10 66.5 9.8 150 168-339 179-330 (338)
194 2hr2_A Hypothetical protein; a 98.2 0.00013 4.4E-09 51.4 14.0 62 240-302 59-131 (159)
195 1klx_A Cysteine rich protein B 98.1 0.00012 3.9E-09 51.0 13.2 84 143-232 35-126 (138)
196 1klx_A Cysteine rich protein B 98.1 0.00011 3.7E-09 51.1 12.7 111 6-128 9-127 (138)
197 3n71_A Histone lysine methyltr 98.1 4.4E-05 1.5E-09 65.1 12.4 124 178-301 319-463 (490)
198 3n71_A Histone lysine methyltr 98.1 4.5E-05 1.5E-09 65.1 12.0 126 212-337 318-464 (490)
199 2kat_A Uncharacterized protein 98.0 8.8E-05 3E-09 49.6 10.3 81 220-302 2-82 (115)
200 2l6j_A TPR repeat-containing p 98.0 6.4E-05 2.2E-09 49.8 9.5 88 238-328 4-98 (111)
201 2kat_A Uncharacterized protein 98.0 5.9E-05 2E-09 50.5 9.3 80 10-92 3-82 (115)
202 2l6j_A TPR repeat-containing p 97.9 8.6E-05 2.9E-09 49.1 9.1 64 203-267 4-67 (111)
203 1zu2_A Mitochondrial import re 97.9 2.5E-05 8.6E-10 54.9 6.3 98 4-106 14-132 (158)
204 1na3_A Designed protein CTPR2; 97.9 0.00024 8.1E-09 44.9 10.1 78 239-318 10-87 (91)
205 1zu2_A Mitochondrial import re 97.8 7.3E-05 2.5E-09 52.5 7.7 95 218-316 17-132 (158)
206 1na3_A Designed protein CTPR2; 97.8 0.00042 1.4E-08 43.7 10.9 16 178-193 19-34 (91)
207 3ma5_A Tetratricopeptide repea 97.7 0.00032 1.1E-08 45.5 8.8 67 235-302 4-70 (100)
208 3qww_A SET and MYND domain-con 97.6 0.00019 6.6E-09 60.2 8.7 99 250-348 310-422 (433)
209 3ma5_A Tetratricopeptide repea 97.6 0.00031 1.1E-08 45.6 8.0 64 26-91 6-69 (100)
210 3qwp_A SET and MYND domain-con 97.6 0.00047 1.6E-08 57.9 10.9 102 246-347 295-410 (429)
211 3ly7_A Transcriptional activat 97.5 0.0041 1.4E-07 50.3 14.2 143 165-312 191-347 (372)
212 3ly7_A Transcriptional activat 97.3 0.0054 1.9E-07 49.6 12.9 66 95-162 274-339 (372)
213 2kc7_A BFR218_protein; tetratr 97.3 0.0012 4.2E-08 42.4 7.6 58 245-303 7-65 (99)
214 3qww_A SET and MYND domain-con 97.2 0.0022 7.6E-08 53.8 9.8 88 215-302 310-411 (433)
215 3qwp_A SET and MYND domain-con 97.1 0.0049 1.7E-07 51.8 11.3 93 210-302 294-400 (429)
216 3bee_A Putative YFRE protein; 97.1 0.0049 1.7E-07 39.2 8.6 68 235-303 3-73 (93)
217 3mkq_A Coatomer beta'-subunit; 97.0 0.032 1.1E-06 51.2 16.6 46 178-229 662-707 (814)
218 1pc2_A Mitochondria fission pr 97.0 0.012 4E-07 40.9 10.3 82 219-302 14-100 (152)
219 3u64_A Protein TP_0956; tetrat 96.9 0.062 2.1E-06 41.8 14.7 94 149-242 179-281 (301)
220 1wy6_A Hypothetical protein ST 96.9 0.042 1.4E-06 37.0 13.5 150 28-200 6-157 (172)
221 3bee_A Putative YFRE protein; 96.9 0.0091 3.1E-07 37.9 8.4 66 25-92 4-72 (93)
222 3mkq_A Coatomer beta'-subunit; 96.9 0.031 1.1E-06 51.3 15.3 102 141-266 607-709 (814)
223 2kc7_A BFR218_protein; tetratr 96.8 0.021 7.3E-07 36.3 10.2 54 143-197 10-64 (99)
224 1pc2_A Mitochondria fission pr 96.7 0.014 4.8E-07 40.6 8.9 85 254-340 14-103 (152)
225 3mkq_B Coatomer subunit alpha; 96.6 0.087 3E-06 37.6 12.3 103 34-158 12-114 (177)
226 2v5f_A Prolyl 4-hydroxylase su 96.6 0.042 1.4E-06 35.6 10.1 62 136-197 8-75 (104)
227 2v5f_A Prolyl 4-hydroxylase su 96.5 0.059 2E-06 34.9 10.4 65 238-302 5-75 (104)
228 4h7y_A Dual specificity protei 96.5 0.071 2.4E-06 36.7 10.6 64 251-316 73-136 (161)
229 4h7y_A Dual specificity protei 96.5 0.11 3.8E-06 35.8 11.5 56 216-272 73-128 (161)
230 1nzn_A CGI-135 protein, fissio 96.4 0.04 1.4E-06 36.8 9.1 85 217-302 15-103 (126)
231 3mkq_B Coatomer subunit alpha; 96.3 0.18 6.2E-06 36.0 13.5 97 179-296 16-112 (177)
232 3u64_A Protein TP_0956; tetrat 96.2 0.12 4.2E-06 40.2 12.1 85 43-130 179-272 (301)
233 1wy6_A Hypothetical protein ST 95.8 0.26 8.8E-06 33.3 17.7 141 143-305 17-157 (172)
234 4b4t_P 26S proteasome regulato 95.4 1.1 3.6E-05 37.9 19.1 255 6-262 30-319 (445)
235 1nzn_A CGI-135 protein, fissio 95.3 0.24 8.4E-06 33.1 9.2 81 80-162 18-103 (126)
236 2ff4_A Probable regulatory pro 94.5 0.21 7.3E-06 41.2 9.1 73 241-314 174-251 (388)
237 4ady_A RPN2, 26S proteasome re 94.5 3 0.0001 38.6 21.9 259 36-301 383-657 (963)
238 4gns_B Protein CSD3, chitin bi 94.5 0.53 1.8E-05 42.4 11.9 54 210-264 344-397 (754)
239 3lvg_A Clathrin heavy chain 1; 94.4 4.1E-05 1.4E-09 63.4 -12.8 245 26-293 53-324 (624)
240 4fhn_B Nucleoporin NUP120; pro 94.4 3.3 0.00011 39.8 17.9 52 32-89 817-868 (1139)
241 3lvg_A Clathrin heavy chain 1; 94.4 9.6E-05 3.3E-09 61.3 -10.8 248 63-338 54-321 (624)
242 4ady_A RPN2, 26S proteasome re 94.2 3.5 0.00012 38.2 24.8 295 31-334 343-655 (963)
243 4fhn_B Nucleoporin NUP120; pro 94.1 4.3 0.00015 39.0 20.0 194 139-339 818-1052(1139)
244 4gns_B Protein CSD3, chitin bi 94.1 0.85 2.9E-05 41.1 12.3 127 102-229 252-397 (754)
245 3o48_A Mitochondria fission 1 94.0 0.88 3E-05 30.6 10.0 68 235-302 37-107 (134)
246 2ff4_A Probable regulatory pro 93.9 0.5 1.7E-05 39.1 10.1 73 65-138 173-250 (388)
247 1v54_E Cytochrome C oxidase po 93.4 0.9 3.1E-05 28.8 9.5 47 256-302 28-74 (109)
248 1y8m_A FIS1; mitochondria, unk 92.1 1.9 6.7E-05 29.4 11.8 68 235-302 36-106 (144)
249 2y69_E Cytochrome C oxidase su 92.1 1.9 6.4E-05 29.0 9.5 47 256-302 71-117 (152)
250 1qsa_A Protein (soluble lytic 92.0 6.2 0.00021 34.8 24.6 80 64-149 73-152 (618)
251 3ffl_A Anaphase-promoting comp 91.6 1.8 6.3E-05 30.4 8.6 70 22-91 13-91 (167)
252 2y69_E Cytochrome C oxidase su 91.1 2.5 8.4E-05 28.5 8.7 62 218-280 68-129 (152)
253 3o48_A Mitochondria fission 1 91.0 1.9 6.6E-05 29.0 8.0 72 269-340 36-110 (134)
254 4b4t_R RPN7, 26S proteasome re 89.7 4.9 0.00017 33.7 11.4 95 170-264 133-234 (429)
255 2uwj_G Type III export protein 89.4 2.7 9.3E-05 26.5 7.8 85 42-136 21-105 (115)
256 2p58_C Putative type III secre 89.1 2.9 9.9E-05 26.4 8.7 86 41-136 21-106 (116)
257 1v54_E Cytochrome C oxidase po 89.0 3 0.0001 26.4 10.0 47 151-197 28-74 (109)
258 1y8m_A FIS1; mitochondria, unk 88.7 4.2 0.00014 27.8 10.0 71 270-340 36-109 (144)
259 1qsa_A Protein (soluble lytic 87.5 15 0.0005 32.5 22.8 249 33-301 78-347 (618)
260 4b4t_R RPN7, 26S proteasome re 87.0 10 0.00036 31.7 11.7 58 67-124 135-194 (429)
261 1zbp_A Hypothetical protein VP 85.6 2.6 8.9E-05 32.4 6.6 54 37-92 7-60 (273)
262 2wpv_A GET4, UPF0363 protein Y 84.2 14 0.00048 29.3 15.8 21 317-337 197-217 (312)
263 2uwj_G Type III export protein 82.8 6.9 0.00024 24.7 7.5 78 78-163 21-98 (115)
264 2p58_C Putative type III secre 82.1 7.5 0.00026 24.6 8.6 78 78-163 22-99 (116)
265 4b4t_P 26S proteasome regulato 81.8 22 0.00076 29.9 24.7 259 41-299 30-321 (445)
266 3ffl_A Anaphase-promoting comp 80.5 13 0.00043 26.2 10.0 24 206-229 66-89 (167)
267 3esl_A Checkpoint serine/threo 80.0 15 0.00052 26.8 9.3 73 60-132 74-149 (202)
268 3eiq_C Programmed cell death p 79.6 23 0.00079 28.7 15.1 24 31-54 58-81 (358)
269 3eiq_C Programmed cell death p 77.3 27 0.00094 28.3 14.6 66 241-307 220-287 (358)
270 1wdy_A 2-5A-dependent ribonucl 76.2 10 0.00036 29.0 7.6 20 33-52 8-27 (285)
271 1wdy_A 2-5A-dependent ribonucl 74.9 14 0.00048 28.2 8.0 205 68-295 7-238 (285)
272 3lpz_A GET4 (YOR164C homolog); 74.4 32 0.0011 27.6 21.9 188 7-230 11-214 (336)
273 3bu8_A Telomeric repeat-bindin 74.3 23 0.00079 26.1 7.9 19 37-55 124-142 (235)
274 3lpz_A GET4 (YOR164C homolog); 73.9 33 0.0011 27.5 21.0 191 113-337 11-216 (336)
275 3esl_A Checkpoint serine/threo 68.8 31 0.0011 25.2 10.3 55 147-201 93-148 (202)
276 3txn_A 26S proteasome regulato 68.3 49 0.0017 27.3 24.4 234 28-265 20-282 (394)
277 2zu6_B Programmed cell death p 66.1 47 0.0016 26.2 11.8 24 67-90 7-30 (307)
278 3jxi_A Vanilloid receptor-rela 64.0 4.8 0.00016 30.6 3.0 54 70-123 9-71 (260)
279 2zu6_B Programmed cell death p 63.9 52 0.0018 26.0 13.4 59 30-91 6-66 (307)
280 2ion_A PDCD4, programmed cell 63.6 34 0.0012 23.7 7.2 65 205-270 11-77 (152)
281 3kea_A K1L; tropism, ANK repea 62.4 41 0.0014 25.9 8.2 202 34-263 35-243 (285)
282 2r9g_A AAA ATPase, central reg 61.1 45 0.0015 24.3 10.0 37 75-112 26-62 (204)
283 2wpv_A GET4, UPF0363 protein Y 60.1 62 0.0021 25.6 19.9 166 29-230 35-215 (312)
284 2xig_A Ferric uptake regulatio 58.9 41 0.0014 23.1 7.3 59 229-288 18-76 (150)
285 3bqo_A Telomeric repeat-bindin 58.6 50 0.0017 24.0 9.5 24 279-302 123-146 (211)
286 3kea_A K1L; tropism, ANK repea 57.3 62 0.0021 24.9 8.4 144 70-230 35-185 (285)
287 1ug3_A EIF4GI, eukaryotic prot 57.3 64 0.0022 25.9 8.5 25 136-160 14-38 (339)
288 1zbp_A Hypothetical protein VP 56.7 66 0.0023 24.8 14.7 116 71-197 5-129 (273)
289 2nsz_A Programmed cell death p 56.4 42 0.0014 22.4 8.3 25 206-230 10-34 (129)
290 3bge_A Predicted ATPase; struc 56.3 55 0.0019 23.8 9.1 38 75-112 19-56 (201)
291 2wvi_A Mitotic checkpoint seri 56.3 49 0.0017 23.2 8.8 51 82-132 79-130 (164)
292 2ion_A PDCD4, programmed cell 55.9 47 0.0016 22.9 9.4 65 171-236 12-78 (152)
293 3hra_A Ankyrin repeat family p 55.4 30 0.001 24.6 6.0 15 37-51 12-26 (201)
294 2xig_A Ferric uptake regulatio 55.3 48 0.0016 22.8 7.7 61 193-254 17-77 (150)
295 4a1g_A Mitotic checkpoint seri 55.0 50 0.0017 22.9 9.2 84 44-133 52-136 (152)
296 2d2s_A Exocyst complex compone 54.3 67 0.0023 24.2 9.0 20 70-89 25-44 (235)
297 1mzb_A Ferric uptake regulatio 54.1 42 0.0014 22.5 6.0 62 228-290 8-70 (136)
298 1mzb_A Ferric uptake regulatio 53.9 47 0.0016 22.3 6.7 61 194-255 9-70 (136)
299 3eyy_A Putative iron uptake re 53.8 34 0.0012 23.3 5.6 59 228-288 9-67 (145)
300 2d2s_A Exocyst complex compone 53.4 70 0.0024 24.1 9.0 90 174-266 24-119 (235)
301 2b7e_A PRE-mRNA processing pro 53.4 17 0.00059 20.3 3.2 29 9-37 3-31 (59)
302 2w57_A Ferric uptake regulatio 53.1 46 0.0016 22.8 6.2 61 228-289 7-68 (150)
303 3eyy_A Putative iron uptake re 52.8 46 0.0016 22.7 6.1 60 193-254 9-68 (145)
304 2w57_A Ferric uptake regulatio 52.4 54 0.0018 22.5 6.6 62 193-255 7-69 (150)
305 2fu4_A Ferric uptake regulatio 51.7 36 0.0012 20.2 6.5 59 264-323 8-67 (83)
306 3bu8_A Telomeric repeat-bindin 51.3 71 0.0024 23.6 11.3 22 246-267 122-143 (235)
307 2fe3_A Peroxide operon regulat 50.9 55 0.0019 22.2 7.8 43 211-253 29-71 (145)
308 1oai_A Nuclear RNA export fact 50.9 10 0.00035 21.3 2.0 24 40-63 33-56 (59)
309 4a1g_A Mitotic checkpoint seri 50.7 59 0.002 22.5 9.9 50 152-201 84-134 (152)
310 2o03_A Probable zinc uptake re 50.6 31 0.0011 23.0 4.9 45 244-288 16-60 (131)
311 1ug3_A EIF4GI, eukaryotic prot 50.3 97 0.0033 24.8 11.0 25 30-54 14-38 (339)
312 4ets_A Ferric uptake regulatio 50.3 48 0.0016 23.2 6.0 23 140-162 39-61 (162)
313 2nsz_A Programmed cell death p 50.0 54 0.0018 21.8 10.8 65 171-236 10-76 (129)
314 3hra_A Ankyrin repeat family p 49.9 31 0.0011 24.6 5.3 6 181-186 82-87 (201)
315 3ygs_P Procaspase 9; apoptosis 49.9 28 0.00095 21.8 4.3 65 13-84 25-89 (97)
316 3mwm_A ZUR, putative metal upt 49.7 28 0.00097 23.5 4.6 46 243-288 18-63 (139)
317 2fe3_A Peroxide operon regulat 49.4 59 0.002 22.1 8.2 60 228-288 12-71 (145)
318 1k1a_A B-cell lymphoma 3-encod 49.0 46 0.0016 24.5 6.3 26 70-95 13-38 (241)
319 4ets_A Ferric uptake regulatio 48.9 65 0.0022 22.5 6.9 59 195-254 25-85 (162)
320 2wvi_A Mitotic checkpoint seri 48.8 67 0.0023 22.6 8.5 57 44-100 77-133 (164)
321 3eu9_A Huntingtin-interacting 48.7 40 0.0014 24.7 5.9 20 246-265 215-234 (240)
322 3ctd_A Putative ATPase, AAA fa 48.5 79 0.0027 23.3 9.4 38 75-112 47-84 (213)
323 3t8k_A Uncharacterized protein 47.2 74 0.0025 22.6 7.7 29 69-97 41-69 (186)
324 3eu9_A Huntingtin-interacting 47.2 48 0.0016 24.3 6.2 9 74-82 17-25 (240)
325 3pvs_A Replication-associated 46.9 1.3E+02 0.0044 25.3 15.0 55 180-234 267-326 (447)
326 2o03_A Probable zinc uptake re 46.7 45 0.0015 22.2 5.2 48 208-255 15-62 (131)
327 3txn_A 26S proteasome regulato 46.2 1.2E+02 0.0043 24.9 24.9 231 64-299 20-281 (394)
328 3mwm_A ZUR, putative metal upt 45.0 42 0.0014 22.7 4.9 49 207-255 17-65 (139)
329 1k1a_A B-cell lymphoma 3-encod 44.6 61 0.0021 23.8 6.4 84 35-124 14-102 (241)
330 3jxi_A Vanilloid receptor-rela 43.9 15 0.0005 27.9 2.8 21 316-336 230-250 (260)
331 4gq2_M Nucleoporin NUP120; bet 42.4 2.2E+02 0.0077 26.8 11.8 60 242-302 844-926 (950)
332 2ijq_A Hypothetical protein; s 41.9 87 0.003 21.9 8.0 52 250-301 44-103 (161)
333 4aez_C MAD3, mitotic spindle c 41.4 1.1E+02 0.0037 22.8 8.3 52 255-306 131-183 (223)
334 1n11_A Ankyrin; clathrin, BAND 39.7 1E+02 0.0036 25.4 7.6 103 13-122 28-134 (437)
335 3mv2_A Coatomer subunit alpha; 39.3 1.4E+02 0.0049 23.7 12.0 53 253-305 185-239 (325)
336 4b4t_S RPN3, 26S proteasome re 38.0 2E+02 0.0067 24.8 11.8 67 132-198 230-300 (523)
337 2fu4_A Ferric uptake regulatio 37.6 64 0.0022 19.1 6.8 32 254-285 33-64 (83)
338 3ltm_A Alpha-REP4; protein eng 37.5 1.1E+02 0.0038 21.9 18.9 91 132-231 94-184 (211)
339 2rfa_A Transient receptor pote 37.1 1.2E+02 0.0041 22.1 7.4 55 175-230 158-221 (232)
340 3pvs_A Replication-associated 36.8 1.9E+02 0.0065 24.3 15.7 89 250-338 267-360 (447)
341 4fke_A Aminopeptidase N; zinc 36.6 2.7E+02 0.0093 26.1 18.3 24 102-125 762-785 (909)
342 3kae_A CDC27, possible protein 35.6 1.2E+02 0.0041 21.7 9.3 25 170-194 116-140 (242)
343 1bd8_A P19INK4D CDK4/6 inhibit 35.5 72 0.0024 21.4 5.1 17 72-88 8-24 (156)
344 2pnn_A Transient receptor pote 34.7 67 0.0023 24.3 5.3 20 73-92 20-39 (273)
345 3qil_A Clathrin heavy chain 1; 33.6 80 0.0027 20.8 4.4 71 2-85 16-86 (125)
346 1bpo_A Protein (clathrin); cla 33.4 2.2E+02 0.0076 24.1 9.6 107 14-123 348-454 (494)
347 3qye_A TBC1 domain family memb 32.2 1.9E+02 0.0065 22.9 10.1 115 224-341 209-327 (331)
348 2qx5_A Nucleoporin NIC96; mRNA 31.8 2.8E+02 0.0096 24.8 13.1 267 2-297 162-467 (661)
349 2cos_A Serine/threonine protei 31.4 56 0.0019 17.8 2.9 41 9-54 7-49 (54)
350 3ljn_A Hypothetical protein; a 31.4 1.3E+02 0.0043 24.1 6.6 218 102-333 21-266 (364)
351 2f6m_A Suppressor protein STP2 31.2 77 0.0026 18.1 4.6 47 275-322 4-50 (65)
352 3bqo_A Telomeric repeat-bindin 30.9 43 0.0015 24.3 3.1 24 69-92 123-146 (211)
353 2etb_A Transient receptor pote 30.9 48 0.0016 24.9 3.8 23 316-338 226-248 (256)
354 2rg8_A Programmed cell death p 30.2 89 0.003 21.9 4.7 23 173-195 15-37 (165)
355 3hzj_A Rabgap1L, RAB GTPase-ac 29.2 2.1E+02 0.0071 22.4 10.5 42 227-268 178-219 (310)
356 2r9g_A AAA ATPase, central reg 28.2 1.8E+02 0.006 21.3 12.0 22 215-237 26-47 (204)
357 4g8k_A 2-5A-dependent ribonucl 27.6 2.1E+02 0.0072 22.4 7.3 48 179-237 281-328 (337)
358 4fke_A Aminopeptidase N; zinc 27.3 3.9E+02 0.013 25.0 18.1 91 172-267 690-787 (909)
359 2rg8_A Programmed cell death p 27.2 1.2E+02 0.004 21.3 4.9 21 104-124 16-36 (165)
360 4g8k_A 2-5A-dependent ribonucl 27.0 2.3E+02 0.0078 22.2 10.5 60 31-96 26-85 (337)
361 3ltj_A Alpharep-4; protein eng 26.9 1.7E+02 0.0058 20.7 18.5 154 131-301 26-179 (201)
362 2qfz_A TBC1 domain family memb 25.9 2.5E+02 0.0087 22.4 7.4 77 119-195 230-313 (345)
363 3qil_A Clathrin heavy chain 1; 25.9 60 0.0021 21.4 2.8 51 136-189 35-85 (125)
364 2rfa_A Transient receptor pote 25.8 1.9E+02 0.0065 20.9 8.1 20 214-233 162-181 (232)
365 2ko4_A Mediator of RNA polymer 25.8 1.1E+02 0.0038 18.2 3.7 33 22-54 31-63 (81)
366 3bge_A Predicted ATPase; struc 25.7 2E+02 0.0067 21.0 10.4 37 215-251 19-55 (201)
367 3t8k_A Uncharacterized protein 25.6 1.8E+02 0.0061 20.5 9.1 29 104-132 41-69 (186)
368 2yru_A Steroid receptor RNA ac 24.6 1.5E+02 0.0052 19.4 5.3 41 85-125 48-88 (118)
369 3ctd_A Putative ATPase, AAA fa 23.0 2.3E+02 0.0079 20.9 11.6 34 215-248 47-80 (213)
370 3t5v_B Nuclear mRNA export pro 23.0 2.9E+02 0.0099 23.3 7.2 30 205-234 178-207 (455)
371 3b7b_A Euchromatic histone-lys 22.4 78 0.0027 23.2 3.6 21 246-266 215-235 (237)
372 2keb_A DNA polymerase subunit 22.3 1.5E+02 0.0053 18.6 6.2 34 255-288 26-59 (101)
373 3lxu_X Tripeptidyl-peptidase 2 22.2 5.9E+02 0.02 25.3 10.1 75 255-332 1266-1340(1354)
374 1lsh_A Lipovitellin (LV-1N, LV 21.8 5.4E+02 0.018 24.7 25.2 145 66-220 313-471 (1056)
375 2etb_A Transient receptor pote 21.7 1.2E+02 0.0041 22.6 4.5 28 70-97 6-33 (256)
376 2p22_A Suppressor protein STP2 21.6 1.4E+02 0.0049 21.1 4.3 53 271-324 109-161 (174)
377 3aji_A 26S proteasome non-ATPa 21.5 2.3E+02 0.0079 20.4 7.5 19 34-52 10-28 (231)
378 3i5p_A Nucleoporin NUP170; hel 21.3 2.2E+02 0.0074 24.6 6.2 36 132-167 216-251 (525)
379 3v30_A DNA-binding protein rfx 21.1 88 0.003 21.4 3.5 27 316-342 140-166 (172)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.6e-35 Score=248.29 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=102.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCCCchHHH
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH---------FEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .+.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444444444444444444444444444444444444444443332 44555555555555555555555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc
Q 018883 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 286 (349)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018883 287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 320 (349)
|+.++|.+++++|.+.|..|+..||+.++..|..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555544
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2e-34 Score=246.33 Aligned_cols=204 Identities=13% Similarity=0.105 Sum_probs=117.1
Q ss_pred HHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc---------hH
Q 018883 46 AFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM---------FA 115 (349)
Q Consensus 46 a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 115 (349)
+..+.+.+++.. ..+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 334444444432 2222 234666677777777777777777777777777777777777777765443 45
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018883 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55566666665566666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018883 196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+.|+.||..+|+.+|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666555556666666655555544
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-32 Score=243.78 Aligned_cols=236 Identities=10% Similarity=-0.045 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018883 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (349)
+..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 33444444444555555555555555444332 1122233333333333333333333333332221 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018883 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
.|.+.|++++|..+|+++.+... .+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555544322 134455555555555555555555555554432 2344445555555555555555
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHccCchhhhHHH
Q 018883 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD--KVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
|.++|+.+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.
T Consensus 460 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555444332 23444555555555555555555555554443 33444 34455555555555555555555
Q ss_pred HHHHHHh
Q 018883 331 QDLVEKM 337 (349)
Q Consensus 331 ~~~~~~~ 337 (349)
++.+.+.
T Consensus 539 ~~~~~~~ 545 (597)
T 2xpi_A 539 LNQGLLL 545 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5444433
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=244.53 Aligned_cols=329 Identities=10% Similarity=0.019 Sum_probs=291.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHH--------------------------------------HHHHHcCCCh
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTAL--------------------------------------LSAYGRSGLF 43 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~ 43 (349)
|.+.|++++|+++|+++.+.+ +.+...+..+ +..|.+.|++
T Consensus 210 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 210 YTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 567899999999999999875 3344444433 4456678899
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHH
Q 018883 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 123 (349)
++|.++|+++.+. +++..+++.++.++.+.|++++|..+|+++.+.+ +.+..+++.++.++.+.|++++|..++++
T Consensus 289 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 289 RRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999865 5899999999999999999999999999999875 34788999999999999999999999999
Q ss_pred HhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 018883 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI 203 (349)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 203 (349)
+.+.. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|..+|+++.+.+. .+.
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 441 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTH 441 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCS
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cch
Confidence 98654 5678899999999999999999999999998864 44788999999999999999999999999988764 488
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch--HHHHH
Q 018883 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD--TVFFN 277 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~ 277 (349)
.+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++++.+.+. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 999999999999999999999999998765 457889999999999999999999999998765 55677 78999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018883 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++.+.++.+.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999875 347899999999999999999999999999887654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=2.7e-28 Score=204.84 Aligned_cols=325 Identities=10% Similarity=0.038 Sum_probs=213.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018883 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 84 (349)
.|++++|...++...+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+
T Consensus 46 ~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555554444432 3344555555555555555555555555555432 2334445555555555555555555
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 018883 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI 164 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (349)
.|+++.+.. +.+...+..+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.+
T Consensus 123 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 199 (388)
T 1w3b_A 123 AYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD- 199 (388)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 555555542 1233344455555556666666666666665543 3344556666666666666666666666666653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018883 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
+.+...+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 277 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNL 277 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 234556666666666666777777766666655432 56777888888888888888888888887754 3456778888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCch
Q 018883 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 324 (349)
...+...|++++|...++.+.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 8888888888888888888877653 467788888888888899999988888888753 33577888888888899999
Q ss_pred hhhHHHHHHHHHhHH
Q 018883 325 NHAKEFQDLVEKMDE 339 (349)
Q Consensus 325 ~~a~~~~~~~~~~~~ 339 (349)
++|.+.++.+.+..+
T Consensus 356 ~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 356 QEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhhCC
Confidence 999888888776544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1e-27 Score=201.28 Aligned_cols=326 Identities=11% Similarity=-0.025 Sum_probs=286.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018883 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHH
Confidence 35799999999999998874 5567778888888999999999999999988763 67889999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018883 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
...|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999998863 3356689999999999999999999999998764 344566778888899999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH
Q 018883 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (349)
. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..... +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 4 446889999999999999999999999999987644 67889999999999999999999999988764 44578899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018883 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
.+..++...|++++|...++.+.+..+ .+..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 999999999999999999999998764 367789999999999999999999999999874 457889999999999999
Q ss_pred chhhhHHHHHHHHHhH
Q 018883 323 MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 323 ~~~~a~~~~~~~~~~~ 338 (349)
++++|.+.++.+.+..
T Consensus 320 ~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF 335 (388)
T ss_dssp CHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999876654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=4.9e-25 Score=188.66 Aligned_cols=322 Identities=10% Similarity=-0.017 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018883 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 88 (349)
..+...+..+.... +.+...+..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455555555542 5577889999999999999999999999988753 56788999999999999999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcch---hhHHHH------------HHHHHccCCHHHHH
Q 018883 89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV---WTMNCT------------LRAFGNSGQIDTME 153 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~ 153 (349)
+.+.+ +.+...+..+..+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|.
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98875 3467888899999999999999999999998764 3333 455544 34488899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018883 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..++++.+.. +.+..++..+..++.+.|++++|...|+++.+... .+..++..+...+...|++++|...++.+....
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998874 45788899999999999999999999999887653 378899999999999999999999999998653
Q ss_pred CCCcHHHHHHH------------HHHHHhcCChhhHHHHHHHHhhCCCC-ch--HHHHHHHHHHHHccCChHHHHHHHHH
Q 018883 234 IKPSCVTLCSL------------VRAYGHAGKPEKLGSVLRFIDNSDIM-LD--TVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 234 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
+.+...+..+ ...+...|++++|...++.+.+..+. +. ..++..+...+.+.|++++|...+++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3334444444 78889999999999999998875432 11 45788889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018883 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 299 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.... +.+...|..+..+|...|++++|.+.++.+.++.+
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 88763 23688899999999999999999999998877654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.6e-24 Score=185.38 Aligned_cols=302 Identities=13% Similarity=0.032 Sum_probs=256.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+.+.|++++|+.+|+.+.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..++.+.|++++
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHH
Confidence 457899999999999999873 5678899999999999999999999999998864 5678899999999999999999
Q ss_pred HHHHHHHHHhCCCCCch---HHHHHH------------HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018883 82 VQALLSDMSTQGIRPNT---VTYNTL------------IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
|...|+++.+.. +.+. ..+..+ ...+...|++++|...++++.... +.+...+..+..+|...
T Consensus 113 A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 113 AEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence 999999999864 2234 555555 444888999999999999998765 55778899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH------------HHHHH
Q 018883 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV------------IDAFG 214 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~ 214 (349)
|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++....+. +...+..+ ...+.
T Consensus 191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELI 268 (450)
T ss_dssp TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 457889999999999999999999999999876533 44555544 78899
Q ss_pred hcCChHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCCh
Q 018883 215 RAGDLKQMEYLFRLMRSERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
..|++++|...++.+.+.. |+ ...+..+...+.+.|++++|...++.+.+..+ .+..+|..+..+|...|++
T Consensus 269 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 269 RDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCH
Confidence 9999999999999998753 33 34788889999999999999999999887653 3678999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 018883 290 AEMKGVLEVMQQRGCKP-DKVTYRTMV 315 (349)
Q Consensus 290 ~~a~~~~~~~~~~~~~p-~~~~~~~l~ 315 (349)
++|...++++.+. .| +...+..+.
T Consensus 346 ~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 346 DEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 9999999999986 34 455565555
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.5e-24 Score=185.15 Aligned_cols=329 Identities=9% Similarity=-0.069 Sum_probs=272.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+.+.|++++|++.|+++.+.+ |+..+|..+..++...|++++|...++++.+.. +.+..++..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHH
Confidence 456899999999999999975 789999999999999999999999999998764 5677899999999999999999
Q ss_pred HHHHHHHHHhCCCCC-----------------------------------------------------------------
Q 018883 82 VQALLSDMSTQGIRP----------------------------------------------------------------- 96 (349)
Q Consensus 82 a~~~~~~~~~~~~~~----------------------------------------------------------------- 96 (349)
|...|+++...+...
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999999987764210
Q ss_pred -------------chHHHHHHHHHHh---ccCchHHHHHHHHHHhc-----cCC--------CcchhhHHHHHHHHHccC
Q 018883 97 -------------NTVTYNTLIDAYG---RAKMFAEMELTLVKMLS-----EDC--------EPDVWTMNCTLRAFGNSG 147 (349)
Q Consensus 97 -------------~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~ 147 (349)
+...+......+. +.|++++|...++++.. ... +.+...+..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 1222333333333 38999999999999887 311 234567888889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 018883 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
++++|...++++.+.... ...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999887533 888889999999999999999999999887543 67889999999999999999999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC-C
Q 018883 228 LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK-P 306 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p 306 (349)
.+.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++...... +
T Consensus 329 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 329 KAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 998765 44567888899999999999999999999887653 36678889999999999999999999998875321 1
Q ss_pred C----HHHHHHHHHHHHc---cCchhhhHHHHHHHHHhHH
Q 018883 307 D----KVTYRTMVRAYST---NGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 307 ~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 339 (349)
+ ...+..+..++.. .|++++|.+.++...+..+
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 1 3388889999999 9999999999998877654
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=6.9e-22 Score=163.78 Aligned_cols=291 Identities=12% Similarity=0.011 Sum_probs=140.6
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018883 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|.
T Consensus 15 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 91 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAE 91 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHH
Confidence 3455555555555555542 3344555555555555555555555555555432 234455555555555555555555
Q ss_pred HHHHHHHhCCCC--CchHHHHHH------------HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCH
Q 018883 84 ALLSDMSTQGIR--PNTVTYNTL------------IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQI 149 (349)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (349)
..++++.+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence 555555544210 122333332 244455555555555555555443 23344455555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH------------HHHHHHhcC
Q 018883 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI------------VIDAFGRAG 217 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~ 217 (349)
++|...++++.+.. +.+..++..+...+...|++++|...++...+.... +...+.. +...+...|
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555555442 234445555555555555555555555555443321 2222221 133344555
Q ss_pred ChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH
Q 018883 218 DLKQMEYLFRLMRSERIKPSC----VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
++++|...++.+.+... .+. ..+..+..++...|++++|...++.+.+..+ .+..++..+...+...|++++|.
T Consensus 249 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp CHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555544321 111 1123344455555555555555555544322 23445555555555555555555
Q ss_pred HHHHHHHhc
Q 018883 294 GVLEVMQQR 302 (349)
Q Consensus 294 ~~~~~~~~~ 302 (349)
..|+++.+.
T Consensus 327 ~~~~~a~~~ 335 (359)
T 3ieg_A 327 QDYEAAQEH 335 (359)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 555555544
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=6.6e-22 Score=163.90 Aligned_cols=307 Identities=9% Similarity=-0.024 Sum_probs=259.0
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 46678889999999999999999999998764 5678899999999999999999999999999874 33678899999
Q ss_pred HHHhccCchHHHHHHHHHHhccCCC--cchhhHHHH------------HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018883 106 DAYGRAKMFAEMELTLVKMLSEDCE--PDVWTMNCT------------LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF 171 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (349)
.++...|++++|...++++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999999876420 344445444 578899999999999999998875 4578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH---------
Q 018883 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC--------- 242 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 242 (349)
..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 9999999999999999999999988764 378899999999999999999999999998764 23333332
Q ss_pred ---HHHHHHHhcCChhhHHHHHHHHhhCCCCchH----HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018883 243 ---SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT----VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 243 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 315 (349)
.+...+...|++++|...++.+.+.... +. ..+..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 2366789999999999999998876543 22 345568889999999999999999999874 23788999999
Q ss_pred HHHHccCchhhhHHHHHHHHHhHHh
Q 018883 316 RAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.++...|++++|.+.++...++.+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999887654
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-23 Score=179.56 Aligned_cols=332 Identities=9% Similarity=-0.029 Sum_probs=274.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCC---------------------
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ--------------------- 60 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------- 60 (349)
+.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|+++....+..
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (514)
T 2gw1_A 49 YVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK 127 (514)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999875 5677899999999999999999999999987653200
Q ss_pred -------------------------------------------------------C-CHHHHHHHHHHHHh---cCChhH
Q 018883 61 -------------------------------------------------------P-DVNTYSILIKSCLK---AFAFDK 81 (349)
Q Consensus 61 -------------------------------------------------------~-~~~~~~~l~~~~~~---~~~~~~ 81 (349)
| +...+......+.. .|++++
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (514)
T 2gw1_A 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDK 207 (514)
T ss_dssp TC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred HHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHH
Confidence 0 12333333333443 799999
Q ss_pred HHHHHHHHHh-----CCC--------CCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC
Q 018883 82 VQALLSDMST-----QGI--------RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 82 a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (349)
|...++++.+ ... +.+..++..+...+...|++++|...++++...... ...+..+...+...|+
T Consensus 208 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCC
Confidence 9999999988 311 224567888889999999999999999999887533 8888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 018883 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.
T Consensus 286 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 286 STEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp CTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998874 446778899999999999999999999999887644 678899999999999999999999999
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-ch----HHHHHHHHHHHHc---cCChHHHHHHHHHHH
Q 018883 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LD----TVFFNCLVDAYGR---LKCFAEMKGVLEVMQ 300 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~ 300 (349)
+.+.. +.+..++..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .|++++|...++.+.
T Consensus 364 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 364 AKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 98764 445678889999999999999999999988764321 11 3488899999999 999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018883 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 301 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.... .+..++..+..+|...|++++|.+.++...++.+.
T Consensus 443 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 443 KLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 8742 36788899999999999999999999988887653
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.8e-22 Score=175.36 Aligned_cols=330 Identities=8% Similarity=-0.011 Sum_probs=252.6
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+.+.|++++|++.|+++.+.. +.++.+|..+..++...|++++|++.|+++.+.. +.+..++..+..++...|++++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHH
Confidence 346789999999999998874 5678889999999999999999999999988764 5677888888899999999888
Q ss_pred HHHHHHHHHhC---------------------------------------------------------------------
Q 018883 82 VQALLSDMSTQ--------------------------------------------------------------------- 92 (349)
Q Consensus 82 a~~~~~~~~~~--------------------------------------------------------------------- 92 (349)
|...|+.+...
T Consensus 112 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (537)
T 3fp2_A 112 AMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191 (537)
T ss_dssp HHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccccc
Confidence 88777432100
Q ss_pred --------------------------------------CCCCc--------hHHHHHHHHHHhccCchHHHHHHHHHHhc
Q 018883 93 --------------------------------------GIRPN--------TVTYNTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 93 --------------------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
...|+ ..++..+...+...|++++|...++++..
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 01111 12344455566677788888888888876
Q ss_pred cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 018883 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+
T Consensus 272 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 347 (537)
T 3fp2_A 272 LH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPY 347 (537)
T ss_dssp HC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHH
T ss_pred cC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 63 446777788888888888888888888888764 346778888888888999999999999888876533 56788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-----CchHHHHHHHHH
Q 018883 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI-----MLDTVFFNCLVD 281 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~ 281 (349)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+... ......+.....
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 888888889999999999998887764 44567788888888999999999998888765321 112233445556
Q ss_pred HHHcc----------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018883 282 AYGRL----------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 282 ~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+... |++++|...++++.+... .+...+..+..+|...|++++|.+.++...++.++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 67777 999999999999888743 36788999999999999999999999988887654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=6.9e-22 Score=161.91 Aligned_cols=295 Identities=9% Similarity=-0.059 Sum_probs=248.1
Q ss_pred CCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH
Q 018883 23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN 102 (349)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (349)
.+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 35677888899999999999999999999998764 4556677778888999999999999999998874 44678889
Q ss_pred HHHHHHhccC-chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018883 103 TLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 103 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
.+...+...| ++++|...+++..... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998765 4457788999999999999999999999998875 33566777799999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHhcCC
Q 018883 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER--------IKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 253 (349)
|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. .+....++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887643 68889999999999999999999999987531 13345788999999999999
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCchh
Q 018883 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-STNGMKN 325 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 325 (349)
+++|...++.+.+... .+...+..+...|.+.|++++|...+++..+... .+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 9999999999987654 3678899999999999999999999999887642 2677788888777 4555543
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=7.9e-22 Score=164.18 Aligned_cols=295 Identities=11% Similarity=-0.066 Sum_probs=231.0
Q ss_pred HHcCCChhHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018883 37 YGRSGLFDKAFS-LLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 37 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
+...|++++|.+ .|++........| +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578889988 8887665432222 34567788889999999999999999999874 4477888899999999999
Q ss_pred hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------HHHHH
Q 018883 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI---------------LLDSY 178 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 178 (349)
+++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998775 557788899999999999999999999999886432 2222221 23344
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018883 179 GKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
...|++++|...++++.+..+.. +..++..+...+...|++++|...++++.... +.+..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998875332 57889999999999999999999999998764 45678899999999999999999
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHccCchhhh
Q 018883 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP----------DKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a 327 (349)
...++.+.+..+ .+..++..+...|.+.|++++|...|+++....... ...+|..+..+|...|+++.|
T Consensus 271 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 999999987653 467889999999999999999999999988763221 168899999999999999999
Q ss_pred HHHHHHHHH
Q 018883 328 KEFQDLVEK 336 (349)
Q Consensus 328 ~~~~~~~~~ 336 (349)
..+++...+
T Consensus 350 ~~~~~~~l~ 358 (368)
T 1fch_A 350 GAADARDLS 358 (368)
T ss_dssp HHHHTTCHH
T ss_pred HHhHHHHHH
Confidence 998774443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=9.2e-21 Score=155.21 Aligned_cols=280 Identities=7% Similarity=-0.083 Sum_probs=238.7
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhH
Q 018883 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 81 (349)
...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...| ++++
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHH
Confidence 35699999999999999874 5567788888899999999999999999998863 557788999999999999 9999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018883 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|...+++..... +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 110 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 110 ARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999998874 3467789999999999999999999999998775 44566777799999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018883 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--------YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+...+...|++++|...+++..+..
T Consensus 188 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 188 IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 75 4578889999999999999999999999887642 13346789999999999999999999999998765
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH-HccCChH
Q 018883 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY-GRLKCFA 290 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 290 (349)
+.+...+..+...+...|++++|...++.+.+..+ .+...+..+..++ ...|+.+
T Consensus 267 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 267 -PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred -ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 44678899999999999999999999999988754 3677888888877 4555543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3.6e-21 Score=160.18 Aligned_cols=288 Identities=8% Similarity=-0.073 Sum_probs=231.0
Q ss_pred CCChHHHHH-HHHHHHhcCC-CC--chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018883 5 CKQPEKAHE-LFQAMVDEGC-DA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 5 ~g~~~~A~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (349)
.|++++|.+ .|++..+... .| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHH
Confidence 466777776 6665444311 11 35678899999999999999999999999874 567889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHH---------------HHHHHHc
Q 018883 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC---------------TLRAFGN 145 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 145 (349)
+|...++++.+.. +.+..++..+..++...|++++|...++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 9999999999875 447889999999999999999999999999876422 2222221 2334448
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 018883 146 SGQIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
.|++++|...++++.+..... +..++..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998874322 588899999999999999999999999988753 367899999999999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc----------hHHHHHHHHHHHHccCChHHHHH
Q 018883 225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML----------DTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.++++.+.. +.+..++..+..++...|++++|...++.+.+..+.. ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998764 4567889999999999999999999999887643221 26789999999999999999998
Q ss_pred HHHH
Q 018883 295 VLEV 298 (349)
Q Consensus 295 ~~~~ 298 (349)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8764
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.4e-19 Score=158.29 Aligned_cols=307 Identities=9% Similarity=-0.009 Sum_probs=247.1
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
....|..+...+.+.|++++|++.|+++.... +.+..++..+..++.+.|++++|.+.++++.+.. +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 35678888999999999999999999998864 5688999999999999999999999999999875 44778899999
Q ss_pred HHHhccCchHHHHHHHHHHhccCCC------------------------------------cchh---------------
Q 018883 106 DAYGRAKMFAEMELTLVKMLSEDCE------------------------------------PDVW--------------- 134 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~--------------- 134 (349)
.++...|++++|...|+.+...... |+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999998644211100 0000
Q ss_pred ---------------hHHHHHHHHHc--------cCCHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCH
Q 018883 135 ---------------TMNCTLRAFGN--------SGQIDTMEKCYEKFQSAGIQPS-------INTFNILLDSYGKAGHF 184 (349)
Q Consensus 135 ---------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~ 184 (349)
....+...+.. .|++++|..+++++.+.... + ..++..+...+...|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccH
Confidence 11111111111 14788899999998876422 3 23466677788899999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018883 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
++|...++++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999998875 458888999999999999999999999998765 456788999999999999999999999999
Q ss_pred hhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhh
Q 018883 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 265 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+..+..
T Consensus 337 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 337 QSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 88654 356788999999999999999999999999874 3357789999999999999999999999988877543
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=2.9e-21 Score=160.69 Aligned_cols=267 Identities=8% Similarity=-0.100 Sum_probs=216.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018883 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888899999999999999999998874 4478889999999999999999999999998765 456788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHH
Q 018883 142 AFGNSGQIDTMEKCYEKFQSAGIQPS----------INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVI 210 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 210 (349)
.|...|++++|...++++.+... .+ ...+..+...+...|++++|...++++.+..+. ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999887531 11 223344577888999999999999999887533 1678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018883 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
..+...|++++|...++++.+.. +.+..++..+..++...|++++|...++.+.+..+ .+..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998764 55678999999999999999999999999988754 35888999999999999999
Q ss_pred HHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018883 291 EMKGVLEVMQQRGCK-----------PDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 291 ~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
+|...|+++.+.... .+...|..+..++...|+.+.+.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998876211 1367899999999999999888776554
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=3e-20 Score=154.48 Aligned_cols=267 Identities=7% Similarity=-0.065 Sum_probs=221.0
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 45568899999999999999999999998864 5678899999999999999999999999999874 44688999999
Q ss_pred HHHhccCchHHHHHHHHHHhccCCCcchh----------hHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHH
Q 018883 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVW----------TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNIL 174 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 174 (349)
.+|...|++++|...++++.+.. +.+.. .+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999998753 22222 2334578899999999999999999987532 168899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018883 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
...+...|++++|...++++.+..+. +..+|..+..++...|++++|...++++.+.. +.+..++..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887643 78899999999999999999999999998764 45578899999999999999
Q ss_pred hhHHHHHHHHhhCCCC-----------chHHHHHHHHHHHHccCChHHHHHHHHH
Q 018883 255 EKLGSVLRFIDNSDIM-----------LDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
++|...++.+.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999988754211 1367899999999999999988877654
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=1.1e-19 Score=148.48 Aligned_cols=265 Identities=5% Similarity=-0.085 Sum_probs=168.8
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 45567788888999999999999999988753 4577888888899999999999999999988874 44677888888
Q ss_pred HHHhccCchHHHHHHHHHHhccCCCcchhhHHHH--------------HH-HHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018883 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT--------------LR-AFGNSGQIDTMEKCYEKFQSAGIQPSINT 170 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (349)
..+...|++++|.+.++++.... +.+...+..+ .. .+...|++++|.+.++++.+.. +.+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 89999999999999999888663 2223333322 11 2555566666666666666553 225555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018883 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 66666666666666666666666655432 245555555566666666666666666555432 2334455555555555
Q ss_pred cCChhhHHHHHHHHhhCCCCc-----------hHHHHHHHHHHHHccCChHHHHHHHH
Q 018883 251 AGKPEKLGSVLRFIDNSDIML-----------DTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
.|++++|...++.+.+..... +...|..+..++.+.|++++|..+++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555555555554432211 34455555555555555555555543
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=1.9e-19 Score=147.12 Aligned_cols=274 Identities=6% Similarity=-0.075 Sum_probs=226.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018883 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
+...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33456677888999999999999999998874 3477888899999999999999999999998875 556788889999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 018883 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL--------------LD-SYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (349)
.+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 999999999999999999876422 33333333 22 367788999999999999887643 78899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc
Q 018883 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 286 (349)
..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+... .+...+..+...|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 999999999999999999999998764 45678899999999999999999999999887653 3678899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhh
Q 018883 287 KCFAEMKGVLEVMQQRGCKP-----------DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
|++++|...++++....... +...|..+..++...|++++|..+++...+..+..
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999998764321 47789999999999999999999887655554433
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.8e-20 Score=153.69 Aligned_cols=284 Identities=13% Similarity=0.115 Sum_probs=135.7
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+-+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHH
Confidence 456788999999999982 335999999999999999999999964 3567799999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018883 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|...++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99988777764 4567889999999999999999887774 367779999999999999999999999976
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018883 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..| .-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhH
Confidence 36899999999999999999999988 278999999999999999999966555422 234 345
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc--CChHHHHHHHHHHHhcCCCC------CHHHHHH
Q 018883 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVMQQRGCKP------DKVTYRT 313 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~ 313 (349)
..++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|.. +.+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence 578899999999999999999998776 45778888888888774 344445544431 223333 4667888
Q ss_pred HHHHHHccCchhhhHHH
Q 018883 314 MVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 314 l~~~~~~~g~~~~a~~~ 330 (349)
+...|.+.++++.|...
T Consensus 288 ~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhchHHHHHHH
Confidence 88899999999887763
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=2.5e-18 Score=137.66 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=177.5
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 018883 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
.-....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3345678888888887776543 3333 3445567788888888888765543 13556777777778888888
Q ss_pred chHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018883 113 MFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
+.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877665434 445556666778888888888888776 456777778888888888888888888
Q ss_pred HHHHhcCCCCchHHH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018883 192 EYMQKYHYSWTIVTY---NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
+++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887764 332211 122333445578888888888887763 5677778888888888888888888888877765
Q ss_pred CCchHHHHHHHHHHHHccCChHH-HHHHHHHHHhc
Q 018883 269 IMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQR 302 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 302 (349)
+ -++.++..++..+...|+.++ +.++++++.+.
T Consensus 231 p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4 366777778888888888765 56778877776
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=3.1e-18 Score=137.15 Aligned_cols=255 Identities=8% Similarity=0.062 Sum_probs=206.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCch--HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC
Q 018883 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG 147 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (349)
++-....|+++.|+..++..... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999988876544 3443 3556678999999999999986654 23677888899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 018883 148 QIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
+.++|.+.++++...+..| +...+..+...+...|++++|...+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 566777788999999999999999987 357889999999999999999999999
Q ss_pred HHHHhCCCCCcHHHH---HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018883 227 RLMRSERIKPSCVTL---CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 303 (349)
+.+.+.. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...|++.....
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998764 443211 2233444456899999999999988753 588899999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHccCchhh-hHHHHHHHHHhHHh
Q 018883 304 CKPDKVTYRTMVRAYSTNGMKNH-AKEFQDLVEKMDET 340 (349)
Q Consensus 304 ~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 340 (349)
. -+..++..++..+...|+.++ +.++++.+.+..+.
T Consensus 231 p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 231 S-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred C-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 3 378899999999999999876 57888888776653
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.9e-16 Score=133.29 Aligned_cols=305 Identities=11% Similarity=-0.023 Sum_probs=170.0
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHc----CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cC
Q 018883 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR----SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AF 77 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 77 (349)
+++++|.+.|++..+.| ++..+..|...|.. .+++++|.+.|++.... -+...+..+...+.. .+
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCC
Confidence 34444444444444432 33333444444443 34444444444444332 123334444444443 34
Q ss_pred ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCCH
Q 018883 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQI 149 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 149 (349)
++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 4444444444444432 33444444444443 445555555555544432 22333444444443 4555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-----CChH
Q 018883 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-----GDLK 220 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~ 220 (349)
++|..+|++..+.| +...+..+...+.. .++.++|...|++..+.+ +...+..+...+... ++++
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 55555555555443 33344445555555 566666666666665543 344555555666555 6777
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc----cCChHHHH
Q 018883 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR----LKCFAEMK 293 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 293 (349)
+|...+++..+.+ +...+..+...+...| ++++|...++...+.+ ++..+..+...|.. .+++++|.
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7777777766654 2345555666665544 5677777777776653 45667777777777 78888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHc----cCchhhhHHHHHHHHHhH
Q 018883 294 GVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 294 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 338 (349)
..|++..+.| +...+..+...|.. .++.++|.+.++...+.+
T Consensus 388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888888765 56677777777777 788888888888877766
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=7e-16 Score=133.26 Aligned_cols=305 Identities=13% Similarity=0.049 Sum_probs=252.6
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHc----CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----c
Q 018883 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGR----SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----A 76 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 76 (349)
.+++++|.+.|++..+.| ++.++..|...|.. .+++++|.+.|++..+. .+...+..+...+.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 689999999999998865 67788888888888 89999999999998875 366777788888888 7
Q ss_pred CChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCC
Q 018883 77 FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQ 148 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 148 (349)
+++++|..+|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999998876 56677778888876 789999999999998765 56677778888877 899
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh----cCChH
Q 018883 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLK 220 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 220 (349)
.++|.++|++..+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...+.. .++++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999988875 56677778887876 789999999999988765 45667777777777 88999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-----CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC---ChHHH
Q 018883 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHA-----GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK---CFAEM 292 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a 292 (349)
+|...|+...+.+ +...+..+...+... +++++|...++...+.+ +...+..+...|...| ++++|
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence 9999999988764 345667777778776 89999999999998875 4456777888887756 78999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCchhhhHHHHHHHHHh
Q 018883 293 KGVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 293 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 337 (349)
.+.|++..+.| +...+..+...|.. .+++++|.+.+++..+.
T Consensus 351 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 351 VEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 99999999874 67888888888888 88999999999887664
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.1e-15 Score=133.30 Aligned_cols=329 Identities=9% Similarity=0.062 Sum_probs=180.6
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChhHH
Q 018883 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC-LKAFAFDKV 82 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a 82 (349)
+.|++++|..+|+++.+. .|.+...|...+..+.+.|++++|..+|+++... .|+...|...+... ...|+.+.|
T Consensus 24 ~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhH
Confidence 468899999999999886 3567788999999999999999999999999876 46766666555322 223444433
Q ss_pred HH----HHHHHHhC-CCCC-chHHHHHHHHHHhc---------cCchHHHHHHHHHHhccC-------------------
Q 018883 83 QA----LLSDMSTQ-GIRP-NTVTYNTLIDAYGR---------AKMFAEMELTLVKMLSED------------------- 128 (349)
Q Consensus 83 ~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~------------------- 128 (349)
.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..+..
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 32 44433321 2222 22333333332221 334444444444333210
Q ss_pred --------------------------------------C-----------------------------------------
Q 018883 129 --------------------------------------C----------------------------------------- 129 (349)
Q Consensus 129 --------------------------------------~----------------------------------------- 129 (349)
+
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 0
Q ss_pred ---------CcchhhHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018883 130 ---------EPDVWTMNCTLRAFGN-------SGQID-------TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 130 ---------~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
+.+...|......+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 1112222222222322 35544 555556555542122345556666666666666666
Q ss_pred HHHHHHHHHhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCChhhHHHHHHHH
Q 018883 187 MSAVMEYMQKYHYSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA-YGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~ 264 (349)
|..+|+++.+..+. + ...|..++..+.+.|++++|..+|++..+.. +.+...+...... +...|++++|..+|+..
T Consensus 340 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 340 VHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 66666666554321 2 2355555555556666666666666665432 1122222221111 22466666677666666
Q ss_pred hhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-CCC--HHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018883 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 265 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.+..+ -++..|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..+.++..+..+
T Consensus 418 l~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 418 LKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 55432 2456666677777777777777777777766532 222 33566666666666777777776666655544
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=160.48 Aligned_cols=115 Identities=12% Similarity=0.275 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018883 168 INTFNILLDSYGKAGHFEKMSAVMEYMQ---KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
..+|+++|++|++.|++++|..+|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3345555555555555555555554443 2344555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCh-hhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018883 245 VRAYGHAGKP-EKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 245 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
|.++++.|+. ++|.+++++|.+.|+.||..+|+.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 5555555542 4455555555555555555555555443
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=6.7e-20 Score=162.33 Aligned_cols=135 Identities=14% Similarity=0.129 Sum_probs=119.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018883 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS---ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
-..+|+++|.+|++.|++++|..+|..|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 58899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhc
Q 018883 279 LVDAYGRLKCF-AEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343 (349)
Q Consensus 279 li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (349)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++.+...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p 264 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSL 264 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCC
Confidence 99999999985 78999999999999999999999998655443 455555666544333
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.9e-16 Score=136.21 Aligned_cols=334 Identities=8% Similarity=-0.061 Sum_probs=226.7
Q ss_pred CCCCCChHHHHHHHHHHHhc--------CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC----C-CC-CCCHHHHH
Q 018883 2 LGKCKQPEKAHELFQAMVDE--------GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT----P-DC-QPDVNTYS 67 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~-~~~~~~~~ 67 (349)
+...|+.++|++.|++..+. ..+....+|+.+..+|...|++++|...+++.... . .. .....++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34679999999999886642 12234567999999999999999999999877542 1 11 22356676
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHhCCCCCchHHHHHHHHHH---hccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018883 68 ILIKSCLKA--FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY---GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 68 ~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
.+..++... +++++|...|++..+.. +-+...+..+..++ ...++.++|++.+++..+.. +.+...+..+...
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHH
Confidence 666666554 57899999999998864 22455555555443 34567788888888887664 3445555555444
Q ss_pred HH----ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc--
Q 018883 143 FG----NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-- 216 (349)
Q Consensus 143 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 216 (349)
+. ..+++++|.+.+++..... +.+..++..+...+...|++++|...+++..+..+. +..++..+...|...
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence 43 4567889999999988875 457788899999999999999999999999887644 566676666555332
Q ss_pred -----------------CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH--HHH
Q 018883 217 -----------------GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV--FFN 277 (349)
Q Consensus 217 -----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 277 (349)
+..+.|...++...+.. +.+..++..+...+...|++++|...|+++.+....+... .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 23566777787776654 4456778889999999999999999999998776544322 233
Q ss_pred HHHH-HHHccCChHHHHHHHHHHHhcCC-----------------------CCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018883 278 CLVD-AYGRLKCFAEMKGVLEVMQQRGC-----------------------KPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 278 ~li~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
.+.. .+...|++++|+..|++...... +.+..+|..+..+|...|++++|.+.+++
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3332 34578899999998887765421 23567899999999999999999999999
Q ss_pred HHHhHHh
Q 018883 334 VEKMDET 340 (349)
Q Consensus 334 ~~~~~~~ 340 (349)
..++.+.
T Consensus 456 ALe~~~~ 462 (472)
T 4g1t_A 456 GLESGSL 462 (472)
T ss_dssp -------
T ss_pred HHhcCCC
Confidence 8877653
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2e-16 Score=124.66 Aligned_cols=224 Identities=12% Similarity=-0.032 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCC--Ccc----hhhHHH
Q 018883 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPD----VWTMNC 138 (349)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 138 (349)
.+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+++..+... .++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444555555555555555554443 3444455555555555555555555554443210 001 344555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018883 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+...... +...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 5555555555555555555555532 221 2344445566666666665554322 44555556666666666
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHH
Q 018883 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
+++|...++++.+.. +.+..++..+...+...|++++|...++.+.+..+ .+...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666665543 33455566666666666666666666666655442 2455566666666666666666666666
Q ss_pred HHhc
Q 018883 299 MQQR 302 (349)
Q Consensus 299 ~~~~ 302 (349)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=8.8e-17 Score=123.18 Aligned_cols=199 Identities=13% Similarity=0.011 Sum_probs=125.5
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH
Q 018883 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT 103 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (349)
|++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 5677788888888888888888888888888764 5677888888888888888888888888888764 335667777
Q ss_pred HHHHHhcc-----------CchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018883 104 LIDAYGRA-----------KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172 (349)
Q Consensus 104 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (349)
+..++... |++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 77777777 66666666666665543 2344555556666666666666666666666554 4555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018883 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.+..++...|++++|...+++..+..+. +...+..+...+...|++++|...+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666666555422 4555555556666666666666655543
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=3.4e-18 Score=140.33 Aligned_cols=251 Identities=13% Similarity=0.136 Sum_probs=111.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHH
Q 018883 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
+.|++++|.++++++. .| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~-----~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 6788999999999882 23 48999999999999999999999653 47779999999999999999999
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018883 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777764 4557888999999999999999988884 367789999999999999999999999976
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018883 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 57999999999999999999999988 267999999999999999999966554322 23334557
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018883 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
++..|.+.|++++|..+++...... +-....|..+.-+|++-+ ++...+.++.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~ 265 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLEL 265 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 9999999999999999999988664 335667777776776653 4444444443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2e-16 Score=124.62 Aligned_cols=230 Identities=13% Similarity=0.007 Sum_probs=197.8
Q ss_pred chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CC----HHH
Q 018883 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ--PS----INT 170 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 170 (349)
....+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|.+.+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34678888899999999999999999999887 77889999999999999999999999998875311 12 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018883 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+..+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 8899999999999999999999998865 342 34667788999999999998754 4456788889999999
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018883 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
.|++++|...++.+.+... .+..++..+...|...|++++|...+++..+... .+...|..+..++...|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999988764 3678899999999999999999999999998742 3688899999999999999999999
Q ss_pred HHHHHHhHHh
Q 018883 331 QDLVEKMDET 340 (349)
Q Consensus 331 ~~~~~~~~~~ 340 (349)
++...++.+.
T Consensus 230 ~~~a~~~~~~ 239 (258)
T 3uq3_A 230 LDAARTKDAE 239 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhChh
Confidence 9999888743
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=1.4e-16 Score=122.01 Aligned_cols=112 Identities=10% Similarity=-0.068 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018883 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (349)
|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444444333221 23333333444444444444444444443333 23333334444444444444444444
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHH
Q 018883 262 RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
+.+.+..+ .+...+..+...+...|++++|...++
T Consensus 175 ~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 175 AKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHTC------------
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44333321 123333334444444444444444333
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=3.7e-16 Score=124.35 Aligned_cols=223 Identities=9% Similarity=-0.085 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018883 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (349)
.++..+..++...|++++|...++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 334444444444444444444444444432 2234444445555555555555555555554442 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHH
Q 018883 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG 258 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (349)
...|++++|...++++.+.. |+.......+..+...|++++|...++...... +++...+ .++..+...++.++|.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHH
Confidence 55555555555555555433 222222223333344456666666665554432 2222222 2444555555666666
Q ss_pred HHHHHHhhCCCCc---hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHH
Q 018883 259 SVLRFIDNSDIML---DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 259 ~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
..+.......... +...+..+...|.+.|++++|...|++..... |+. +.....++...|++++|.+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6666555432110 14566777777777777777777777777653 322 222344556667777766654
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=9.2e-16 Score=121.90 Aligned_cols=164 Identities=7% Similarity=-0.057 Sum_probs=75.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
|..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|...+++..+..+ .+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 12334444444455555555555555544444321 133344444412222
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCC-CCch------HHHHHHHHHHHHc
Q 018883 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSD-IMLD------TVFFNCLVDAYGR 285 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~ 285 (349)
.+++++|...++++.+.. +.+...+..+...+...|+ +++|...++.+.+.. ..|+ ..+|..+...|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 335555555555554432 2223444444444544454 444555554443321 0011 2355556666666
Q ss_pred cCChHHHHHHHHHHHhc
Q 018883 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~~~~~ 302 (349)
.|++++|...+++..+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666666655
No 39
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=3.1e-14 Score=124.22 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=97.5
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 018883 15 FQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI 94 (349)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 94 (349)
|++..+.. |-+...|..++.. .+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|+++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 45555543 5578899999984 78999999999999999863 567788999999999999999999999999987
Q ss_pred CCchHHHHHHHHHH-hccCchHHHHH----HHHHHhcc-CCCc-chhhHHHHHHHHHc---------cCCHHHHHHHHHH
Q 018883 95 RPNTVTYNTLIDAY-GRAKMFAEMEL----TLVKMLSE-DCEP-DVWTMNCTLRAFGN---------SGQIDTMEKCYEK 158 (349)
Q Consensus 95 ~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~ 158 (349)
.|+...|..++... ...|+.++|.+ +|++.... |..| +...|...+..... .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 36777777776533 33455555444 66655432 3222 34455554444332 4555566655555
Q ss_pred HHh
Q 018883 159 FQS 161 (349)
Q Consensus 159 ~~~ 161 (349)
..+
T Consensus 156 al~ 158 (530)
T 2ooe_A 156 GCV 158 (530)
T ss_dssp HTT
T ss_pred HHh
Confidence 444
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2e-15 Score=119.97 Aligned_cols=239 Identities=12% Similarity=-0.033 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 018883 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP--SINTFNILL 175 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 175 (349)
...+......+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+.+..+ ....|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667778888999999999999988764 3455678888889999999999999999988843222 234588899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018883 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
..+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887644 67899999999999999999999999987763 455677777773455567999
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHccCchh
Q 018883 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRG-CKPD------KVTYRTMVRAYSTNGMKN 325 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~ 325 (349)
+|...++.+.+..+ .+...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988754 356778888888888888 888999998887652 1233 257788889999999999
Q ss_pred hhHHHHHHHHHhHHh
Q 018883 326 HAKEFQDLVEKMDET 340 (349)
Q Consensus 326 ~a~~~~~~~~~~~~~ 340 (349)
+|.+.++...++++.
T Consensus 239 ~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 239 KADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999887654
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=1.5e-16 Score=126.71 Aligned_cols=247 Identities=10% Similarity=-0.035 Sum_probs=110.8
Q ss_pred CCCChHHHHHHHHHHHhcCC---CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018883 4 KCKQPEKAHELFQAMVDEGC---DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (349)
..|++++|++.|+++.+... +.+..++..+..++...|++++|...|+++.... +.+..++..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 34555555555555554321 1123445555555555555555555555554432 234445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018883 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+|...++++.+.. +.+...+..+..++...|++++|...++++ .
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------------------------------~ 138 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF-----------------------------------Y 138 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------------------H
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHH-----------------------------------H
Confidence 5555555554432 123444444444444445555555444444 4
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---Cc
Q 018883 161 SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK---PS 237 (349)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 237 (349)
+.. |+.......+..+...|++++|...+++...... ++...+. ++..+...++.++|...+......... .+
T Consensus 139 ~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 139 QDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 432 1111222222233344555555555544443321 1222222 344444445555555555554332110 01
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 018883 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
...+..+...+...|++++|...++.+....+. +. .....++...|++++|.+.+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 344555555666666666666666665554321 21 12233445555555555544
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=2.6e-14 Score=113.65 Aligned_cols=224 Identities=8% Similarity=-0.058 Sum_probs=126.1
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCchHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
++.++..+...+...|++++|.+.|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 4555666666666666777777777666652 244555666666666 666666666666666654 45555
Q ss_pred HHHHHHHhc----cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018883 102 NTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN----SGQIDTMEKCYEKFQSAGIQPSINTFNI 173 (349)
Q Consensus 102 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 566666665 666666666666665543 34455555555555 566666666666655543 3344445
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018883 174 LLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 174 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
+...+.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+. ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 5555555 555666666555555443 33444455555555 5555555555555554331 33444444
Q ss_pred HHHHh----cCChhhHHHHHHHHhhCC
Q 018883 246 RAYGH----AGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 246 ~~~~~----~~~~~~a~~~~~~~~~~~ 268 (349)
..+.. .+++++|...++...+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 44554 555555555555554443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=3.5e-14 Score=112.90 Aligned_cols=225 Identities=10% Similarity=-0.056 Sum_probs=161.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccCCCcchhhH
Q 018883 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCEPDVWTM 136 (349)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 136 (349)
-+..++..+...+...+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356677777777888888888888888877732 45666777777777 788888888888877664 55666
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 018883 137 NCTLRAFGN----SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 137 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777777777 788888888888777764 56667777777777 778888888887777655 4556666
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018883 209 VIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 209 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
+...+.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...++...+.+. ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 6666766 777777777777776653 34566667777777 7777777777777776542 45566667
Q ss_pred HHHHc----cCChHHHHHHHHHHHhcC
Q 018883 281 DAYGR----LKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 281 ~~~~~----~g~~~~a~~~~~~~~~~~ 303 (349)
..|.. .+++++|...|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 777777777777777764
No 44
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.1e-14 Score=121.62 Aligned_cols=309 Identities=8% Similarity=-0.075 Sum_probs=220.6
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHHHHhhcC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 018883 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT-------PDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ----- 92 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 92 (349)
.....|+.|...+...|++++|++.|++..+. ...+....+|+.+..++...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667999999999999999999999886431 111345678999999999999999999999887653
Q ss_pred C-CC-CchHHHHHHHHHHhc--cCchHHHHHHHHHHhccCCCcchhhHHHHHHH---HHccCCHHHHHHHHHHHHhcCCC
Q 018883 93 G-IR-PNTVTYNTLIDAYGR--AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA---FGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 93 ~-~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+ .. ....++..+..++.. .+++++|...|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 11 134556555545444 467999999999998764 3344444444444 445677888999999988774 3
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018883 166 PSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
.+..++..+...+.. .++.++|...+++.....+. +...+..+...+...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 466666666555544 46788999999998877643 67888999999999999999999999998764 3455666
Q ss_pred HHHHHHHHhc-------------------CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 242 CSLVRAYGHA-------------------GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 242 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
..+..+|... +..+.|...++...+..+ .+...+..+...|...|++++|...|++....
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666555322 235567777777776553 35567888999999999999999999999987
Q ss_pred CCCCCHH--HHHHHHH-HHHccCchhhhHHHHHHHHHhH
Q 018883 303 GCKPDKV--TYRTMVR-AYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 303 ~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
...|... .+..+.. .....|+.++|+..++...++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5443321 2233332 3457899999999988776654
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=3.1e-15 Score=123.76 Aligned_cols=196 Identities=7% Similarity=0.008 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018883 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA-FDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
.+|..+...+...|++++|+..|+++.... +-+..+|+.+..++...|+ +++|+..+++.+... +-+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 344555555555555555555555555442 3344555555555555554 555555555555542 224445555555
Q ss_pred HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHH
Q 018883 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK-AGHFE 185 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 185 (349)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 5555555555555555555443 3344445555555555555555555555555443 2244445555555444 33324
Q ss_pred HH-----HHHHHHHHhcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHHHH
Q 018883 186 KM-----SAVMEYMQKYHYSWTIVTYNIVIDAFGRAG--DLKQMEYLFRLM 229 (349)
Q Consensus 186 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~ 229 (349)
+| +..+++.....+. +...|+.+...+...| ++++|.+.+..+
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 44 2444444443322 3444444444444444 344444444443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=1.1e-14 Score=114.27 Aligned_cols=200 Identities=9% Similarity=-0.036 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018883 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
...+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 3445555555566666666666666555432 3345555555555666666666666666555542 224445555555
Q ss_pred HHhccCchHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018883 107 AYGRAKMFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
.+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555555421122 33444445555555555555555555554442 223444555555555555555
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018883 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+|...++.+.+... .+...+..+...+...|++++|...++.+.+
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555544332 2344444444555555555555555555444
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=7.7e-15 Score=112.95 Aligned_cols=164 Identities=9% Similarity=-0.126 Sum_probs=66.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHH
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA-GHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAF 213 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 213 (349)
+..+...+...|++++|.+.++++.+.. +.+..++..+...+... |++++|...++++.+.+..| +...+..+...+
T Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 45 WLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 3333333444444444444444433332 12333344444444444 44444444444443311111 133344444444
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH
Q 018883 214 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..+..+...+..+...+...|+.+.|.
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 44444444444444443322 12233444444444444444444444444443322123333444444444445555554
Q ss_pred HHHHHHHh
Q 018883 294 GVLEVMQQ 301 (349)
Q Consensus 294 ~~~~~~~~ 301 (349)
.+++.+..
T Consensus 203 ~~~~~~~~ 210 (225)
T 2vq2_A 203 EYEAQLQA 210 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=1.2e-14 Score=111.93 Aligned_cols=204 Identities=12% Similarity=-0.025 Sum_probs=143.5
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH
Q 018883 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 346667777888888888888888888877653 4556777778888888888888888888877763 3356677777
Q ss_pred HHHHhcc-CchHHHHHHHHHHhccCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018883 105 IDAYGRA-KMFAEMELTLVKMLSEDCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182 (349)
Q Consensus 105 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (349)
...+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 7778888 88888888888777622222 34566667777777777777777777776653 335666777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018883 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777766543135556666666667777777777777776543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=8.3e-15 Score=114.98 Aligned_cols=198 Identities=7% Similarity=-0.092 Sum_probs=89.2
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018883 101 YNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180 (349)
Q Consensus 101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (349)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3333334444444444444444443332 2223334444444444444444444444444332 1233444444444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018883 181 AGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
.|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555554444311111 33444444444555555555555555544432 2234444455555555555555555
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.++.+.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 197 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555544332 23444455555555555555555555555544
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=1.6e-15 Score=118.30 Aligned_cols=201 Identities=7% Similarity=-0.024 Sum_probs=113.1
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 44556666677777777777777777776643 4456667777777777777777777777776653 23556666666
Q ss_pred HHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018883 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 66777777777777777666553 3345555666666666666666666666665543 234555566666666666666
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018883 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+|...++++.+... .+..++..+...+...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666555432 24555555666666666666666666665543
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1e-14 Score=120.63 Aligned_cols=248 Identities=9% Similarity=0.002 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc-hHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018883 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
...|..+...+...|++++|+..+++.+... +-+...|+.+..++...|+ +++|+..+++++... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4678888889999999999999999999874 3367889999999999997 999999999999875 557788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-cCChH
Q 018883 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR-AGDLK 220 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 220 (349)
++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++.+..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999885 448889999999999999999999999999998755 78899999999988 66657
Q ss_pred HH-----HHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC------
Q 018883 221 QM-----EYLFRLMRSERIKPSCVTLCSLVRAYGHAG--KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK------ 287 (349)
Q Consensus 221 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------ 287 (349)
+| +..+++.+... +-+...|..+...+...| ++++|...+..+ +.. +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47888887764 446678888888888888 688999999888 443 346788889999998874
Q ss_pred ---ChHHHHHHHHHH-HhcCCCCC-HHHHHHHHHHHH
Q 018883 288 ---CFAEMKGVLEVM-QQRGCKPD-KVTYRTMVRAYS 319 (349)
Q Consensus 288 ---~~~~a~~~~~~~-~~~~~~p~-~~~~~~l~~~~~ 319 (349)
..++|.++++++ .+. .|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 258999999998 655 343 455665555543
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=1.9e-15 Score=117.97 Aligned_cols=198 Identities=8% Similarity=-0.011 Sum_probs=95.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018883 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444444555555555555544432 2234444444555555555555555555554442 224445555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018883 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
..|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555554432 244455555555555555555555555554432 2334455555555566666666666
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.++.+.+... .+..++..+...|...|++++|...++++.+.
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6655554432 24455555666666666666666666666554
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=4.8e-16 Score=130.87 Aligned_cols=300 Identities=14% Similarity=0.037 Sum_probs=221.5
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC
Q 018883 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQ----GIRP 96 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 96 (349)
.....+......+...|++++|...|+++.... +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445567778888999999999999999988763 233 356788888999999999999998886543 2122
Q ss_pred -chHHHHHHHHHHhccCchHHHHHHHHHHhccC----C-CcchhhHHHHHHHHHccCC--------------------HH
Q 018883 97 -NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED----C-EPDVWTMNCTLRAFGNSGQ--------------------ID 150 (349)
Q Consensus 97 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~--------------------~~ 150 (349)
...++..+...+...|++++|...+++..... . .....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 24567788889999999999999998876541 0 1124477788888999999 99
Q ss_pred HHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----chHHHHHHHHHHHhcCChH
Q 018883 151 TMEKCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-W----TIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 151 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~ 220 (349)
+|.+.+.+..+. +.. ....++..+...+...|++++|...+++..+.... + ...++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999988876542 111 12456778888999999999999999887653211 1 1347888888999999999
Q ss_pred HHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CC-CchHHHHHHHHHHHHccCChH
Q 018883 221 QMEYLFRLMRSE----RIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DI-MLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 221 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~ 290 (349)
+|...+++..+. +..+ ...++..+...+...|++++|...++...+. +. .....++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887643 1111 1457788889999999999999999887643 11 112557888999999999999
Q ss_pred HHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHccCchhh
Q 018883 291 EMKGVLEVMQQR----GCK-PDKVTYRTMVRAYSTNGMKNH 326 (349)
Q Consensus 291 ~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~ 326 (349)
+|...+++..+. +.. ....++..+...+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999987654 211 124567777788888887643
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=4.5e-15 Score=125.29 Aligned_cols=272 Identities=10% Similarity=-0.021 Sum_probs=176.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCchH
Q 018883 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLKAFAFDKVQALLSDMSTQ----G-IRPNTV 99 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 99 (349)
.+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...+++.... + .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556667788888888888888887753 2233 46777778888888888888888876553 1 122345
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhcc----C-CCcchhhHHHHHHHHHccCC-----------------HHHHHHHHH
Q 018883 100 TYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVWTMNCTLRAFGNSGQ-----------------IDTMEKCYE 157 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 157 (349)
++..+...|...|++++|...+++.... + .+....++..+...+...|+ +++|.+.+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6677777888888888888888776643 1 12234566677777778888 777777777
Q ss_pred HHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHhcCChHHHHHHHH
Q 018883 158 KFQSA----GI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 158 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
+..+. +. .....++..+...+...|++++|...+++..+.... .....+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65432 11 112345666777777888888888877776543211 012366677777777788888877777
Q ss_pred HHHhCCC---C--CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCchHHHHHHHHHHHHccCChHHHHHHHH
Q 018883 228 LMRSERI---K--PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-----IMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 228 ~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
+..+... . ....++..+...+...|++++|...++...... ......++..+...|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6654210 0 113556667777777777777777777665421 11123456667777777777777777777
Q ss_pred HHHhc
Q 018883 298 VMQQR 302 (349)
Q Consensus 298 ~~~~~ 302 (349)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=4.1e-15 Score=125.50 Aligned_cols=274 Identities=11% Similarity=0.004 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch----HHHHHHHHHHhccCchHHHHHHHHHHhcc----C-CCcchh
Q 018883 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVW 134 (349)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 134 (349)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+...|...|++++|...+++.... + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556677889999999999999999887422 32 47888889999999999999999987654 1 133456
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 018883 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSA----G-IQPSINTFNILLDSYGKAGH-----------------FEKMSAVME 192 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 192 (349)
.+..+...|...|++++|...+++..+. + .+....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888889999999999999999987654 1 12235577888889999999 999999988
Q ss_pred HHHhc----CC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018883 193 YMQKY----HY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI---K--PSCVTLCSLVRAYGHAGKPEKLGSVLR 262 (349)
Q Consensus 193 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (349)
+..+. +. ......+..+...+...|++++|...+++..+... . ....++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11 11345788888999999999999999998865311 1 112377888999999999999999998
Q ss_pred HHhhCCC-----CchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHccCchhhhHHHHH
Q 018883 263 FIDNSDI-----MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CK-PDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 263 ~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
....... .....++..+...|...|++++|...+++..... .. ....++..+..+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8765321 1125678889999999999999999999887641 11 124578888899999999999999999
Q ss_pred HHHHhH
Q 018883 333 LVEKMD 338 (349)
Q Consensus 333 ~~~~~~ 338 (349)
...++.
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 877654
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.1e-14 Score=122.53 Aligned_cols=279 Identities=11% Similarity=0.016 Sum_probs=214.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCchHHHHHHHHHHhcc----CCC-
Q 018883 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE- 130 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 130 (349)
.+....+......+...|++++|...|++..+.+.. + ..++..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 456667778888999999999999999999887422 3 357888889999999999999999887543 212
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHhcCC--------------------HH
Q 018883 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG----IQ-PSINTFNILLDSYGKAGH--------------------FE 185 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~--------------------~~ 185 (349)
.....+..+...+...|++++|...+++..+.. .. ....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 235677888889999999999999998876541 11 124477888889999999 99
Q ss_pred HHHHHHHHHHhc----C-CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCc----HHHHHHHHHHHHhcCChh
Q 018883 186 KMSAVMEYMQKY----H-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-KPS----CVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 186 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 255 (349)
+|...+.+.... + ......++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876543 1 111245788888999999999999999998864310 111 247888899999999999
Q ss_pred hHHHHHHHHhhC----CCCc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCchh
Q 018883 256 KLGSVLRFIDNS----DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK-PD----KVTYRTMVRAYSTNGMKN 325 (349)
Q Consensus 256 ~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~ 325 (349)
+|...++..... +..+ ...++..+...|...|++++|...+++....... ++ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887643 1111 1567888999999999999999999988764111 11 567888889999999999
Q ss_pred hhHHHHHHHHHhHH
Q 018883 326 HAKEFQDLVEKMDE 339 (349)
Q Consensus 326 ~a~~~~~~~~~~~~ 339 (349)
+|.+.++...++.+
T Consensus 325 ~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 325 QAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877644
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=6.3e-13 Score=122.26 Aligned_cols=268 Identities=13% Similarity=0.132 Sum_probs=184.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHH
Confidence 3456788888888887521 2222333332 567788888887754 235677788888888888888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018883 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|...|.+. -|...|..++.++.+.|++++|.+.+...++.. +++...+.++.+|++.+++++...+. +
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 88888553 266777788888888888888888888776654 33323335777888888777544332 1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018883 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 335556667888888888888888888774 47788888888888888888888765 244777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018883 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 320 (349)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|.-+...|.+
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 77777888888877777755532 2355666788888888888888888887776543 2233445444444444
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.66 E-value=5e-14 Score=117.71 Aligned_cols=234 Identities=8% Similarity=-0.121 Sum_probs=142.1
Q ss_pred HHHHHhccCchHHHHHHHHHHhcc----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcC--C----CCCHHHHH
Q 018883 104 LIDAYGRAKMFAEMELTLVKMLSE----DCEP-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG--I----QPSINTFN 172 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 172 (349)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+.+..+.- . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444555666677777666666543 1111 23556666666677777777777666655421 0 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCcHHHHH
Q 018883 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RI-KPSCVTLC 242 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 242 (349)
.+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6667777777777777777666543111 11246666777777777777777777776551 22 33355677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC----CCCchHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 018883 243 SLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRGCKP-DKVTYRTM 314 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l 314 (349)
.+...+...|++++|...++...+. +-+.....+..+...|...|+ +++|..++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 7777777777777777777765432 111222335667777777777 56666666554 2222 23456667
Q ss_pred HHHHHccCchhhhHHHHHHHHHhHHh
Q 018883 315 VRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
...|...|++++|.+.++...++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 77788888888888888877776654
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=1e-14 Score=119.30 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=106.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CchH
Q 018883 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQ----GIR-PNTV 99 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 99 (349)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44555666777888888888888777652 223 355667777777788888887777765443 111 1244
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCC--------------------HHHHHH
Q 018883 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQ--------------------IDTMEK 154 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~~ 154 (349)
++..+...+...|++++|...+++..+... .....++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 566666677777777777777766553210 0112345555566666666 566655
Q ss_pred HHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHhcCChHHHHH
Q 018883 155 CYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 155 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
.+++..+. +.. ....++..+...+...|++++|...+++..+.... ....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55554321 100 11223444445555555555555555544322100 011234444444444444444444
Q ss_pred HHHHH
Q 018883 225 LFRLM 229 (349)
Q Consensus 225 ~~~~~ 229 (349)
.+++.
T Consensus 245 ~~~~a 249 (338)
T 3ro2_A 245 YYKKT 249 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=3.4e-13 Score=109.09 Aligned_cols=236 Identities=6% Similarity=-0.065 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-------cCch-------HHHHHH
Q 018883 63 VNTYSILIKSCLKA----FAF----DKVQALLSDMSTQGIRPNTVTYNTLIDAYGR-------AKMF-------AEMELT 120 (349)
Q Consensus 63 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 120 (349)
...|...+....+. ++. ++|..+|++..... +-+...|..+...+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555555554443 233 56777888877752 3466677777766653 4664 778888
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018883 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN-TFNILLDSYGKAGHFEKMSAVMEYMQKYHY 199 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (349)
|++....-.+.+...|..+...+...|++++|..+|+++.+... .+.. .|..+...+.+.|++++|..+|++..+...
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 87777631133455677777777778888888888888776421 1233 677777777777888888888877776543
Q ss_pred CCchHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCc--hHHH
Q 018883 200 SWTIVTYNIVIDAFG-RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-IML--DTVF 275 (349)
Q Consensus 200 ~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~ 275 (349)
.+...|........ ..|++++|..+|+...+.. +.+...|..++..+...|++++|..+|+...... ..| ....
T Consensus 166 -~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 166 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp -CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred -CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 24444443333322 2577788888877776543 3356677777777777788888888887777652 233 3556
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 276 FNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
|..++..+.+.|+.+.|..+++++.+.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777778888887777777765
No 61
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=1.4e-12 Score=119.93 Aligned_cols=280 Identities=14% Similarity=0.113 Sum_probs=222.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018883 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 84 (349)
.|++++|.++.++. -++.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+
T Consensus 1089 i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666665543 35778999999999999999999999653 467788889999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 018883 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI 164 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (349)
.+...++.. +++...+.++.+|++.+++++..... . .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 999887764 34434445899999999988644442 1 345566778999999999999999999985
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018883 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 47999999999999999999999877 26799999999999999999998877643 3455677799
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc--CChHHHHHHHHHHHhcCCCC------CHHHHHHHHH
Q 018883 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVMQQRGCKP------DKVTYRTMVR 316 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~ 316 (349)
+..|.+.|.+++|+.+++...... +-....|+.+...|++- ++..++.+.|..-. +++| +...|..++.
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHH
Confidence 999999999999999999888765 34667888888777764 44555666555332 2222 5677999999
Q ss_pred HHHccCchhhhHH
Q 018883 317 AYSTNGMKNHAKE 329 (349)
Q Consensus 317 ~~~~~g~~~~a~~ 329 (349)
.|.+.|+++.|..
T Consensus 1364 LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1364 LYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhcccHHHHHH
Confidence 9999999998883
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=6.8e-14 Score=116.91 Aligned_cols=295 Identities=9% Similarity=-0.061 Sum_probs=213.9
Q ss_pred CCCCChHHHHHHHHHHHhc--CC--CCchhhHHHHHHH--HHcCCChhHHH-----------HHHHHhhcCCCCCCCHHH
Q 018883 3 GKCKQPEKAHELFQAMVDE--GC--DANTQSFTALLSA--YGRSGLFDKAF-----------SLLEHMKNTPDCQPDVNT 65 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~~ 65 (349)
.+.+++++|..+++++.+. .. .++...|..++.. ..-.++++.+. +.++.+... +.+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~~~~ 99 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QARLTG 99 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc---CCCchh
Confidence 3578999999999998764 22 2233344555443 23345566666 777777654 222222
Q ss_pred HHH------HHHHHHhcCChhHHHHHHHHHHhC----CCCC-chHHHHHHHHHHhccCchHHHHHHHHHHhccC--C---
Q 018883 66 YSI------LIKSCLKAFAFDKVQALLSDMSTQ----GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED--C--- 129 (349)
Q Consensus 66 ~~~------l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~--- 129 (349)
+.. ....+...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+.. .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222 556677899999999999998774 2112 34678889999999999999999999987541 1
Q ss_pred C-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC
Q 018883 130 E-PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PS----INTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY 199 (349)
Q Consensus 130 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 199 (349)
. ....+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1 12456788889999999999999999998754211 11 247788899999999999999999988762 22
Q ss_pred -CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCc
Q 018883 200 -SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 200 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 271 (349)
+....++..+...+...|++++|...+++..+. +-+.....+..+...+...|+ .++|..+++.... ...
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHH
Confidence 335678889999999999999999999988653 212223345677788888888 6677777766622 122
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
....+..+...|...|++++|...+++..+.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3457778999999999999999999988764
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=1.1e-14 Score=119.09 Aligned_cols=276 Identities=11% Similarity=0.012 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCchHHHHHHHHHHhcc----CC-Ccchh
Q 018883 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-EPDVW 134 (349)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 134 (349)
..+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.... +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555677888999999999999999887422 3 367788889999999999999999887643 21 22356
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 018883 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPS----INTFNILLDSYGKAGH--------------------FEKMSA 189 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 189 (349)
.+..+...+...|++++|...+.+..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888999999999999999998765311 112 3477788888999999 999999
Q ss_pred HHHHHHhc----C-CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCcHHHHHHHHHHHHhcCChhhHHH
Q 018883 190 VMEYMQKY----H-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RI-KPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 190 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
.+++.... + .......+..+...+...|++++|...+++..+. +. .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98876542 1 1112457788888999999999999999987643 11 1113377888899999999999999
Q ss_pred HHHHHhhCC----CC-chHHHHHHHHHHHHccCChHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHccCchhhhHH
Q 018883 260 VLRFIDNSD----IM-LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CK-PDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 260 ~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
.++...+.. .. ....++..+...|...|++++|...+++..... -. ....++..+...|...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 998876431 11 125677888999999999999999999887541 11 124577888899999999999999
Q ss_pred HHHHHHHhHHh
Q 018883 330 FQDLVEKMDET 340 (349)
Q Consensus 330 ~~~~~~~~~~~ 340 (349)
.++...++.+.
T Consensus 325 ~~~~a~~~~~~ 335 (338)
T 3ro2_A 325 FAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99988877553
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=2.2e-13 Score=101.38 Aligned_cols=166 Identities=11% Similarity=-0.014 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018883 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
+..|..+...+...|++++|++.|++..+.. +-+..++..+...+.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555543 224455555555555555555555555555444322 34444444555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHH
Q 018883 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+...++++.+...+....... +.+...+..+...+...|++++|...++...+..+ .+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554432 23344455555555555555555555555554432 2444555555555555555555
Q ss_pred HHHHHHHHhc
Q 018883 293 KGVLEVMQQR 302 (349)
Q Consensus 293 ~~~~~~~~~~ 302 (349)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 5555555543
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=5.3e-14 Score=120.61 Aligned_cols=216 Identities=8% Similarity=-0.063 Sum_probs=161.7
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHH
Q 018883 42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF-DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
.+++++..++...... +.+...+..+...+...|++ ++|+..|++..+.. +-+...|..+..+|...|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3667777777766542 45677777788888888888 88888888877763 33567788888888888888888888
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CC
Q 018883 121 LVKMLSEDCEPDVWTMNCTLRAFGNS---------GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA--------GH 183 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 183 (349)
|++..+. .|+...+..+...+... |++++|.+.+++..+.. +.+...|..+..++... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8888766 35567777777788887 88888888888887764 33677778888888777 88
Q ss_pred HHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018883 184 FEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 184 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (349)
+++|...|++..+..+. .+...|..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888776431 367778888888888888888888888877654 345566777778888888888877766
Q ss_pred HHH
Q 018883 262 RFI 264 (349)
Q Consensus 262 ~~~ 264 (349)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=7.2e-13 Score=107.17 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHH-------cCCCh-------hHHHHHHHHhhc-CCCCCCCHHHHHHHHHHH
Q 018883 9 EKAHELFQAMVDEGCDANTQSFTALLSAYG-------RSGLF-------DKAFSLLEHMKN-TPDCQPDVNTYSILIKSC 73 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 73 (349)
++|..+|++..+.. +.++..|..++..+. +.|++ ++|..+|++... .. +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 67778888887753 556777877777765 34775 788888888876 32 34556778888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCc-hH-HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHH-HccCCHH
Q 018883 74 LKAFAFDKVQALLSDMSTQGIRPN-TV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF-GNSGQID 150 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 150 (349)
.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +.+...|....... ...|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888775 343 33 67777777777888888888888877654 23333343332221 1257777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--chHHHHHHHHHHHhcCChHHHHHHHH
Q 018883 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSW--TIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
+|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++..... .+| ....|..++....+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766653 3356667777777777777777777777776642 233 34566666776677777777777777
Q ss_pred HHHhC
Q 018883 228 LMRSE 232 (349)
Q Consensus 228 ~~~~~ 232 (349)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=4e-13 Score=114.43 Aligned_cols=302 Identities=14% Similarity=0.067 Sum_probs=165.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCCh---hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC---
Q 018883 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLF---DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF--- 77 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 77 (349)
+.|++++|.+.|++..+.| ++.++..|...|...|+. ++|.+.|++..+. +...+..+...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CC
T ss_pred hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCC
Confidence 4567778888887777665 344455555666666666 7777777776632 3344445555344433
Q ss_pred --ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc---------------------------------------hHH
Q 018883 78 --AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM---------------------------------------FAE 116 (349)
Q Consensus 78 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------~~~ 116 (349)
++++|..+|++..+.|.. + .+..|...|...+. .+.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 566777777777665522 1 33333333332221 222
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHH
Q 018883 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSG---QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA----GHFEKMSA 189 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~ 189 (349)
+..+++... ..+...+..+...|...| +.++|.+.|++..+.| +++...+..+...|... ++.++|..
T Consensus 164 a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 164 VERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 222333222 223336666777777777 7788888888887776 34555555566666544 57888888
Q ss_pred HHHHHHhcCCCCchHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-----ChhhHHHHH
Q 018883 190 VMEYMQKYHYSWTIVTYNIVIDA-F--GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-----KPEKLGSVL 261 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~ 261 (349)
.|++.. .+ ++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|...|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 888776 33 45556666655 3 45778888888888877665 4455666666665 44 788888888
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHc----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCchhhhHHHHHH
Q 018883 262 RFIDNSDIMLDTVFFNCLVDAYGR----LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDL 333 (349)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 333 (349)
+... .+ ++..+..|...|.. ..++++|...|+...+.|. ......|...|.. ..+.++|..+++.
T Consensus 311 ~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 311 EKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 7777 33 45566666666665 3477888888887777653 3344445555543 3456666666655
Q ss_pred HHH
Q 018883 334 VEK 336 (349)
Q Consensus 334 ~~~ 336 (349)
..+
T Consensus 384 A~~ 386 (452)
T 3e4b_A 384 AKA 386 (452)
T ss_dssp HHT
T ss_pred HHH
Confidence 433
No 68
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=3.9e-14 Score=120.66 Aligned_cols=281 Identities=14% Similarity=0.016 Sum_probs=165.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 018883 32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF---DKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
.+...+.+.|++++|.++|++..+.+ +...+..+...+...|+. ++|..+|++..+. +...+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 35667788999999999999997753 233444566666677777 8999999998854 555666666645
Q ss_pred hccC-----chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH---HHHHHHHHHHhcC-----------------
Q 018883 109 GRAK-----MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID---TMEKCYEKFQSAG----------------- 163 (349)
Q Consensus 109 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~----------------- 163 (349)
...+ ++++|...|++..+.|. ++ .+..+...|...+..+ ++.+.+......|
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 4444 78999999999887653 22 3444444444333211 1222222222111
Q ss_pred ---------------CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc----CChHH
Q 018883 164 ---------------IQPSINTFNILLDSYGKAG---HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA----GDLKQ 221 (349)
Q Consensus 164 ---------------~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 221 (349)
...+...+..+...|...| +.++|...|++..+.+.. +...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHH
Confidence 1122236667777777788 788888888888777643 555555666666544 68888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHH-H--HhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC-----ChHHHH
Q 018883 222 MEYLFRLMRSERIKPSCVTLCSLVRA-Y--GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK-----CFAEMK 293 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~ 293 (349)
|...|+... .| +...+..+... + ...+++++|...|+...+.+ +...+..+...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 888888876 33 34555555555 3 45788888888888888766 4556666777776 45 888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHc----cCchhhhHHHHHHHHH
Q 018883 294 GVLEVMQQRGCKPDKVTYRTMVRAYST----NGMKNHAKEFQDLVEK 336 (349)
Q Consensus 294 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 336 (349)
..|++.. .| +...+..+...|.. ..+.++|.+.+++..+
T Consensus 308 ~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 308 AHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 8888777 33 66677777766665 3377888888776654
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=7.2e-15 Score=119.00 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc------C
Q 018883 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-------GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------D 128 (349)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 128 (349)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3556777777888888888888888877663 22334556677777777778888888777776643 1
Q ss_pred -CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 018883 129 -CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA------GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY--- 197 (349)
Q Consensus 129 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 197 (349)
.+.....+..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223455666667777777777777777766543 1111 3344555666666666666666666665543
Q ss_pred ---CCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018883 198 ---HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 198 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+..| ...++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 234555556666666666666666666554
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=4.6e-13 Score=99.67 Aligned_cols=169 Identities=11% Similarity=0.014 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018883 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
++.+|..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3445555555555555555555555555554432 45555555555555555555555555554433 233444444555
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhh
Q 018883 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNH 326 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 326 (349)
.+...++++.+...+.......+ .+...+..+...|.+.|++++|.+.|++..+... .+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555554432 2444555555555555555555555555555432 144555555555555555555
Q ss_pred hHHHHHHHHHhHH
Q 018883 327 AKEFQDLVEKMDE 339 (349)
Q Consensus 327 a~~~~~~~~~~~~ 339 (349)
|.+.++...++++
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 5555555555544
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.8e-14 Score=115.51 Aligned_cols=172 Identities=19% Similarity=0.203 Sum_probs=128.3
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP------DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ------G 93 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 93 (349)
+..++..+...+...|++++|...|+++.+.. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 45677888888888999999999998887620 11334566778888888899999999988887764 2
Q ss_pred C-CCchHHHHHHHHHHhccCchHHHHHHHHHHhcc------CC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---
Q 018883 94 I-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------DC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--- 162 (349)
Q Consensus 94 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 162 (349)
- +....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 224567778888888899999999988887754 21 234556777888888899999999988887764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018883 163 ---GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 163 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (349)
+..| ...++..+...+...|++++|...++++.+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2122 3456777888888899999999998887763
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.5e-13 Score=117.75 Aligned_cols=216 Identities=8% Similarity=-0.055 Sum_probs=184.9
Q ss_pred ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch-HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018883 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF-AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
.++++...++...... +.+...+..+..++...|++ ++|.+.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4677788888776653 34778889999999999999 99999999998775 446788999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc--------CCh
Q 018883 157 EKFQSAGIQPSINTFNILLDSYGKA---------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA--------GDL 219 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 219 (349)
++..+.. |+...+..+...+... |++++|...+++..+..+. +...|..+..++... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999874 6678888999999999 9999999999999887644 788899999999888 999
Q ss_pred HHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 018883 220 KQMEYLFRLMRSERIK---PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
++|...|++..+.. + .+...+..+..++...|++++|...++.+.+..+. +...+..+..++...|++++|...+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998764 3 47788999999999999999999999999887643 6778888999999999999998776
Q ss_pred HHHH
Q 018883 297 EVMQ 300 (349)
Q Consensus 297 ~~~~ 300 (349)
..+.
T Consensus 316 ~~~~ 319 (474)
T 4abn_A 316 GKTK 319 (474)
T ss_dssp TTCC
T ss_pred cccc
Confidence 5543
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.56 E-value=1.2e-11 Score=102.91 Aligned_cols=302 Identities=11% Similarity=0.007 Sum_probs=202.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCc----hH
Q 018883 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN----TYSILIKSCLKAFAFDKVQALLSDMSTQGI-RPN----TV 99 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 99 (349)
........+...|++++|...+++...... ..+.. +++.+...+...|++++|...+++...... ..+ ..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455667789999999999999876532 22222 456667788889999999999998765311 111 23
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhcc----CCC--c-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC----CCH
Q 018883 100 TYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE--P-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ----PSI 168 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 168 (349)
++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566777888999999999999888753 211 2 2345666778888999999999999988765322 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHH
Q 018883 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT-IVTYN-----IVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCV 239 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 239 (349)
.++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 5677788888999999999999988865422211 11222 23344678999999999998876543211 123
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCchH-HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018883 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDT-VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTM 314 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 314 (349)
.+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...... . ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccH
Confidence 4567778888999999999998877542 222233 3666778888899999999999988876411 0 112
Q ss_pred HHHHHccCchhhhHHHHHHHHHhHH
Q 018883 315 VRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+..+...| +....+++.+.+..+
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHcc--HHHHHHHHHHHhCCC
Confidence 23344445 445555555544433
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=4.3e-12 Score=105.78 Aligned_cols=316 Identities=13% Similarity=0.024 Sum_probs=215.2
Q ss_pred CCchhhHHHHHHHH--HcCCChhHHHHHHHHhhcCC-CC--CCCHHHHHHHHHH--HHhcCChhHHH---------HHHH
Q 018883 24 DANTQSFTALLSAY--GRSGLFDKAFSLLEHMKNTP-DC--QPDVNTYSILIKS--CLKAFAFDKVQ---------ALLS 87 (349)
Q Consensus 24 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 87 (349)
.|+..+-+.|-.-| ...+++++|..+++++.+.. .. .++...|-.++.. ..-.+...... ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555656666565 78999999999998875421 11 2333334444432 11122222222 5666
Q ss_pred HHHhCCCCCch----HHHHHHHHHHhccCchHHHHHHHHHHhccCC-----CcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018883 88 DMSTQGIRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSEDC-----EPDVWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 88 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
.+.....+.+. ..+......+...|++++|...+++..+... .....++..+...|...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65443111111 1223344556788999999999999875421 11346778888899999999999999988
Q ss_pred HHhcC----C-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C-CCchHHHHHHHHHHHhcCChHHHHHHHH
Q 018883 159 FQSAG----I-Q-PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----Y-SWTIVTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 159 ~~~~~----~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
..+.. . . ....++..+...|...|++++|...+++..+.. . .....++..+...+...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 76531 1 1 125567888899999999999999998876531 1 1124577888899999999999999999
Q ss_pred HHHhC----CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCchHHHHHHHHHHHHccCC---hHHHHHHH
Q 018883 228 LMRSE----RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLDTVFFNCLVDAYGRLKC---FAEMKGVL 296 (349)
Q Consensus 228 ~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~ 296 (349)
+..+. +.+....++..+...+...|++++|...++...+. +.+.....+..+...|...++ +.+|...+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 88761 22334677888999999999999999999987653 222234456777777888888 77777777
Q ss_pred HHHHhcCCCCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhh
Q 018883 297 EVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCL 342 (349)
Q Consensus 297 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (349)
+. .+..|+ ...+..+...|...|++++|.+.++...+......
T Consensus 327 ~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 327 EK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred Hh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 65 332232 45667788899999999999999999887765443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=6.3e-12 Score=104.76 Aligned_cols=295 Identities=8% Similarity=-0.053 Sum_probs=203.6
Q ss_pred CCCCChHHHHHHHHHHHhcC--C--CCchhhHHHHHHH--HHcCCChhHHH---------HHHHHhhcCCCCCCCH--H-
Q 018883 3 GKCKQPEKAHELFQAMVDEG--C--DANTQSFTALLSA--YGRSGLFDKAF---------SLLEHMKNTPDCQPDV--N- 64 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~~--~- 64 (349)
.+.+++++|.++++++.+.. . ..+...|-.++.. ..-.+.++.+. +.++.+.... .+.. .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~~~l~ 100 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ--KKLTGLLK 100 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG--HHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC--CCCccHHH
Confidence 35789999999999887641 1 1233334444433 11112222223 6666655421 1111 1
Q ss_pred --HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----chHHHHHHHHHHhccCchHHHHHHHHHHhcc----CC-C-c
Q 018883 65 --TYSILIKSCLKAFAFDKVQALLSDMSTQGI-RP----NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-E-P 131 (349)
Q Consensus 65 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~ 131 (349)
.+......+...|++++|...+++..+... .+ ...++..+..+|...|+++.|...+++..+. +. . .
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 223344566789999999999999876511 11 2457788889999999999999999887753 11 1 1
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC
Q 018883 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA----GIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQK-----YHYSW 201 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 201 (349)
...+++.+...|...|++++|.+.+.+..+. +.. ....++..+...+...|++++|...+++..+ ....
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~- 259 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL- 259 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-
Confidence 3567788889999999999999999987653 111 1245677888999999999999999998876 4333
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHH
Q 018883 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER----IKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTV 274 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~ 274 (349)
...++..+...+.+.|++++|...+++..+.. -+.....+..+...+...++ ..+|...++.... ......
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~ 337 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHH
Confidence 47788889999999999999999999987642 22223455666666777777 6667766665321 122345
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.+..+...|...|++++|...|++..+.
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6778999999999999999999988653
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.52 E-value=2.8e-11 Score=100.62 Aligned_cols=264 Identities=9% Similarity=0.030 Sum_probs=159.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchh----hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHh
Q 018883 4 KCKQPEKAHELFQAMVDEGCDANTQ----SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLK 75 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 75 (349)
..|++++|...+++..+.....+.. +++.+...+...|++++|.+.+++......-.++. .++..+...+..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4677888888887776653111211 45556666777788888888877765431111222 224556667777
Q ss_pred cCChhHHHHHHHHHHhC----CCC--C-chHHHHHHHHHHhccCchHHHHHHHHHHhccCCC----cchhhHHHHHHHHH
Q 018883 76 AFAFDKVQALLSDMSTQ----GIR--P-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE----PDVWTMNCTLRAFG 144 (349)
Q Consensus 76 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 144 (349)
.|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... .....+..+...+.
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 78888888877776543 211 2 2344555667777778888888888776644211 12244566667777
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHh
Q 018883 145 NSGQIDTMEKCYEKFQSAGIQPS--INTFN----ILLDSYGKAGHFEKMSAVMEYMQKYHYSW---TIVTYNIVIDAFGR 215 (349)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 215 (349)
..|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+...+..
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 265 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 265 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 78888888888877654311111 11111 22334667788888888877765543221 12245566677777
Q ss_pred cCChHHHHHHHHHHHhC----CCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018883 216 AGDLKQMEYLFRLMRSE----RIKPSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
.|++++|...++..... +..++. ..+..+..++...|+.++|...++.....
T Consensus 266 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 266 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 78888888877776432 211222 25555666777778888888877777654
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=2.4e-12 Score=114.91 Aligned_cols=165 Identities=8% Similarity=-0.015 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018883 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
...++.+...+.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4445555555555555555555555555542 224445555555555555555555555555544322 34455555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHH
Q 018883 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+...|++++|++.|++..+.. +-+...+..+..++...|++++|+..++++.+..+. +...+..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555554432 223444555555555555555555555555444321 344445555555555555555
Q ss_pred HHHHHHHHh
Q 018883 293 KGVLEVMQQ 301 (349)
Q Consensus 293 ~~~~~~~~~ 301 (349)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.51 E-value=5.5e-12 Score=93.63 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018883 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (349)
.+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344444555555555555555555544332 244455555555555555555555555554432 234455555555555
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHH
Q 018883 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
..|++++|...++.+..... .+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666655554432 244555556666666666666666666665553 2245556666666666666666666
Q ss_pred HHHHHHHhHH
Q 018883 330 FQDLVEKMDE 339 (349)
Q Consensus 330 ~~~~~~~~~~ 339 (349)
.++...+..+
T Consensus 166 ~~~~~~~~~~ 175 (186)
T 3as5_A 166 HFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
Confidence 6666655543
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=5.5e-12 Score=93.63 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=106.8
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018883 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455666667777777777777777776543 4456667777777777777777777777776653 335556666666
Q ss_pred HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018883 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 6777777777777777666543 3345555666666666666666666666666553 3345556666666666666666
Q ss_pred HHHHHHHHHhc
Q 018883 187 MSAVMEYMQKY 197 (349)
Q Consensus 187 a~~~~~~~~~~ 197 (349)
|...++++.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666665443
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=8.1e-12 Score=111.52 Aligned_cols=166 Identities=7% Similarity=-0.003 Sum_probs=142.6
Q ss_pred chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018883 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (349)
+...|+.|..+|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46788999999999999999999999998764 4457788889999999999999999999988874 336888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018883 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
++...|++++|+..|++..+.... +...|+.+..++...|++++|+..|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998887644 67889999999999999999999999988764 4457788889999999999999
Q ss_pred HHHHHHHHhh
Q 018883 257 LGSVLRFIDN 266 (349)
Q Consensus 257 a~~~~~~~~~ 266 (349)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888765
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=6.1e-11 Score=91.34 Aligned_cols=196 Identities=13% Similarity=0.004 Sum_probs=132.5
Q ss_pred CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018883 96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175 (349)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (349)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35567777778888888888888888888876533666666667788888888888888888887764 33566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCch-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--cHHHHHHHHH
Q 018883 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTI-------VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP--SCVTLCSLVR 246 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 246 (349)
..+...|++++|...+++..+..+. +. ..|..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 8888888888888888888776533 34 456667777777888888888888877643 22 3456666666
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
++...| ...++.+...+. .+...|.... ....+.+++|...+++..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 665433 334444444432 1233333322 33445677888888887776
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=2e-12 Score=102.95 Aligned_cols=229 Identities=12% Similarity=0.026 Sum_probs=160.1
Q ss_pred CCCCChHHHHHHHHHHHhc-------CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC------CCCCCCHHHHHHH
Q 018883 3 GKCKQPEKAHELFQAMVDE-------GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT------PDCQPDVNTYSIL 69 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 69 (349)
...|++++|+..|++..+. ..+....++..+...+...|++++|...++++... +..+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888776652 22234677889999999999999999999988754 2213345678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC------C-CCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc------C-CCcchhh
Q 018883 70 IKSCLKAFAFDKVQALLSDMSTQ------G-IRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE------D-CEPDVWT 135 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 135 (349)
...+...|++++|...+.+.... . .+....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 1 1234667888999999999999999999988765 1 1234567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCC
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQSA-------GIQPS-INTFNILLDSYGKAGHF------EKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~ 201 (349)
+..+...+...|++++|...+++..+. ...+. ...+..+.......+.. ..+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999988763 11222 22333333333332222 2222222222111 122
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018883 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
...++..+...+...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999988653
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=5.3e-12 Score=100.48 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018883 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
...++..+...|...|++++|...+++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666677777777777777777776654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=3.4e-11 Score=92.82 Aligned_cols=199 Identities=10% Similarity=-0.002 Sum_probs=156.0
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018883 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567788888999999999999999999998865467788888999999999999999999999887644 678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHH
Q 018883 211 DAFGRAGDLKQMEYLFRLMRSERIKPSC-------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVD 281 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 281 (349)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++.+.+..+ . +...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHHH
Confidence 99999999999999999998764 3334 4577888889999999999999999988642 2 3567777888
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018883 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+|...| ..+++.+...+. .+...+.... ....+.+++|...++...++.+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 876654 344555555532 2444444443 34456789999999988887654
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=5.4e-09 Score=92.48 Aligned_cols=120 Identities=13% Similarity=0.040 Sum_probs=74.6
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCC---hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh--
Q 018883 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL---FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF-- 79 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 79 (349)
.+.++.+..+|+++... +|.....|..-+..-.+.++ ++.+..+|++.......+|++..|..-+....+.++.
T Consensus 79 ~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred cCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 56778888888888876 46667778877777777777 8888888888877632237887877777665555443
Q ss_pred ------hHHHHHHHHHHh-CCC-CCc-hHHHHHHHHHHhc---------cCchHHHHHHHHHHh
Q 018883 80 ------DKVQALLSDMST-QGI-RPN-TVTYNTLIDAYGR---------AKMFAEMELTLVKML 125 (349)
Q Consensus 80 ------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 125 (349)
+.+.++|+.... .|. .++ ...|...+..... .++.+.+..+|++.+
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 234466666554 355 443 4566666554322 223444555555554
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=4.1e-11 Score=96.02 Aligned_cols=207 Identities=13% Similarity=0.032 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc----CCCcc-hhhHHHHHHHHHccCCHHHH
Q 018883 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCEPD-VWTMNCTLRAFGNSGQIDTM 152 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 152 (349)
++++|...|.+. ...|...|++++|...|++.... +-+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 23455667777777777666543 21111 45666677777777777777
Q ss_pred HHHHHHHHhcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-c----hHHHHHHHHHHHhcCChHH
Q 018883 153 EKCYEKFQSAGI---QP--SINTFNILLDSYGKA-GHFEKMSAVMEYMQKYHYSW-T----IVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 153 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 221 (349)
...+++..+... .+ ...++..+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777776654310 11 133566666666664 77777777776665432110 0 2456666666777777777
Q ss_pred HHHHHHHHHhCCCCCcH------HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hH---HHHHHHHHHHH--ccCCh
Q 018883 222 MEYLFRLMRSERIKPSC------VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DT---VFFNCLVDAYG--RLKCF 289 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~li~~~~--~~g~~ 289 (349)
|...+++..+....... ..+..+..++...|++++|...++...+..+.. +. ..+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 77777766654322111 134555666666777777777777666543211 11 12233344443 23455
Q ss_pred HHHHHHHHHH
Q 018883 290 AEMKGVLEVM 299 (349)
Q Consensus 290 ~~a~~~~~~~ 299 (349)
++|+..|+.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 5555555444
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=1.3e-09 Score=85.96 Aligned_cols=244 Identities=7% Similarity=0.030 Sum_probs=163.2
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018883 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
++-..-.|++..++.-...+... .++ ....-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~---~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKV---TDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCC---CCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCcc---chH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 34455678999888844433321 232 3334455778888877642 12234444555444444 322
Q ss_pred hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018883 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
|...+++....+ .++...+..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677788877665 45555566788888899999999999998877653 2367778888899999999999999999
Q ss_pred HHHhcCCCC-----chHHHHHHHHHHH--h--cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018883 193 YMQKYHYSW-----TIVTYNIVIDAFG--R--AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263 (349)
Q Consensus 193 ~~~~~~~~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 263 (349)
+|.+.. | +..+...++.++. . .+++.+|..+|+++.+. .|+..+...++.++...|++++|...++.
T Consensus 161 ~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 998764 4 3455555665532 2 33889999999998654 35433333444478889999999999987
Q ss_pred HhhCC---------CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 264 IDNSD---------IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 264 ~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+.+.. -+-++.+...+|......|+ +|.++++++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 65531 02366777556666666676 788889988886
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=2.6e-09 Score=84.28 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=26.8
Q ss_pred HHHHHHHhccCchHHHHHHHHHHhccCC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018883 102 NTLIDAYGRAKMFAEMELTLVKMLSEDC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444555555555444433321 12333444444444445555555555544444
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=1e-08 Score=90.78 Aligned_cols=206 Identities=12% Similarity=-0.005 Sum_probs=139.9
Q ss_pred hhhHHHHHHHHHccCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CC-
Q 018883 133 VWTMNCTLRAFGNSGQIDTME-KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---------SW- 201 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~- 201 (349)
...|...+..+...|+.++|. ++|++.... .+.+...|..++...-+.|+++.|..+|+.+..... .|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 334444444455667777786 888887765 345666677777888888888888888888765310 12
Q ss_pred -----------chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-CChhhHHHHHHHHhhCCC
Q 018883 202 -----------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA-GKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 202 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 269 (349)
....|...+....+.|+.+.|..+|..+.+.....+...|...+..-.+. ++.+.|..+|+...+.-
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~- 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF- 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-
Confidence 13357777777777888888888888887651112233343333222233 45888888888877652
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018883 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+-+...|...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+..+.+++.+..+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3356667778887788889999999999888764321 3467777877778889888888888888776553
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=5.9e-10 Score=87.72 Aligned_cols=187 Identities=6% Similarity=-0.041 Sum_probs=118.9
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCchH
Q 018883 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTV 99 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 99 (349)
.+...+..+...+.+.|++++|+..|+.+.... +.+ ...+..+..++.+.|++++|...|++..+... +....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456777788888899999999999999998763 223 57788888899999999999999999888632 12245
Q ss_pred HHHHHHHHHhc--------cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018883 100 TYNTLIDAYGR--------AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF 171 (349)
Q Consensus 100 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (349)
.+..+..++.. .|++++|...|+++.... +.+......+. .+..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 66677778877 899999999999888763 21222221110 00000000 01113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHhc----------CChHHHHHHHHHHHhC
Q 018883 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRA----------GDLKQMEYLFRLMRSE 232 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 232 (349)
..+...+.+.|++++|...|+.+.+..+.. ....+..+..++... |++++|...++.+.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 445556666666666666666665543221 234455555555544 6666677776666554
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=5.5e-10 Score=89.45 Aligned_cols=159 Identities=8% Similarity=-0.050 Sum_probs=71.2
Q ss_pred HHccCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C--chHHHHHHHHH
Q 018883 143 FGNSGQIDTMEKCYEKFQSA----GIQPS-INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS---W--TIVTYNIVIDA 212 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~ 212 (349)
|...|++++|...|.+..+. |.+++ ..+|+.+..+|...|++++|+..+++..+.... + -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544332 11111 334555555555555555555555544332110 0 02344455555
Q ss_pred HHhc-CChHHHHHHHHHHHhCCC---CC-c-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH------HHHHHHH
Q 018883 213 FGRA-GDLKQMEYLFRLMRSERI---KP-S-CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT------VFFNCLV 280 (349)
Q Consensus 213 ~~~~-~~~~~a~~~~~~~~~~~~---~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li 280 (349)
|... |++++|...+++..+... .+ . ..++..+...+...|++++|...++.+.+..+.... ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 5553 555555555555443210 00 0 233445555555555555555555555443221111 1344444
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 018883 281 DAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~~~~ 301 (349)
.++...|++++|...|++...
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555555443
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=6.4e-10 Score=84.27 Aligned_cols=132 Identities=10% Similarity=-0.017 Sum_probs=90.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018883 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
+..++.+.|++++|...|++..+..+. +...+..+...+...|++++|...|++..+.. +.+..++..+...+...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 777788888888888888888777643 67788888888888888888888888887764 4456677777777665543
Q ss_pred --hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHH
Q 018883 254 --PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTY 311 (349)
Q Consensus 254 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 311 (349)
.+.+...+..+.. ..|....+.....++...|++++|...|++..+. .|+....
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 3334445544432 2333334445566677788888898888888875 5665433
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=6.8e-10 Score=87.36 Aligned_cols=186 Identities=9% Similarity=-0.042 Sum_probs=117.1
Q ss_pred chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcc---hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCCHHHH
Q 018883 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD---VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI--QPSINTF 171 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 171 (349)
+...+..+...+.+.|++++|...|+++.... +.+ ...+..+..++...|++++|...|+++.+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45556666667777777777777777777653 222 45566677777777777777777777776532 1123455
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018883 172 NILLDSYGK--------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 172 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
..+..++.. .|++++|...|+++.+..+. +......+.. +..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 566666666 77777777777777665422 2222211111 0000000 0112456
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHcc----------CChHHHHHHHHHHHhc
Q 018883 244 LVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRL----------KCFAEMKGVLEVMQQR 302 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 302 (349)
+...+...|++++|...++.+.+..+.. ....+..+..+|... |++++|...|+.+.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6778888899999999998887654321 345677778888766 8889999999988876
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=4.4e-10 Score=78.42 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=69.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 018883 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
+|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 34555555666666666666666655432 3345555555566666666666666666655543 22344455555555
Q ss_pred hccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018883 109 GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
...|++++|.+.++++.... +.+...+..+...+...|++++|...+.++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555555432 22334444455555555555555555555443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=9e-10 Score=76.79 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018883 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG 252 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (349)
.+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.... +.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 3344444444444444444444433211 33344444444444444444444444443332 222333444444444444
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018883 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
++++|...++.+..... .+...+..+...+...|++++|...++++..
T Consensus 84 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44444444444443321 1233444444444444444444444444443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=3.8e-10 Score=101.08 Aligned_cols=174 Identities=9% Similarity=-0.062 Sum_probs=145.1
Q ss_pred hccCchHHHHHHHHHHh--------ccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018883 109 GRAKMFAEMELTLVKML--------SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (349)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999988 332 4456778888899999999999999999998874 4478889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018883 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
.|++++|...|++..+..+. +...+..+..++...|++++ ...|++..+.. +.+...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887644 67888999999999999999 99999998765 45678899999999999999999999
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018883 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
++++.+.+.. +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999886542 56777778888766554
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=4.7e-10 Score=100.53 Aligned_cols=173 Identities=9% Similarity=-0.112 Sum_probs=145.1
Q ss_pred HccCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018883 144 GNSGQIDTMEKCYEKFQ--------SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|...++++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999988 432 446778888999999999999999999999887644 78899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHH
Q 018883 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...++.+.+.++. +...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998765 4456888899999999999999 9999999887653 677899999999999999999999
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHHccCc
Q 018883 296 LEVMQQRGCKPD-KVTYRTMVRAYSTNGM 323 (349)
Q Consensus 296 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 323 (349)
|++..+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988876 444 5677777777766555
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=8.2e-08 Score=76.47 Aligned_cols=217 Identities=6% Similarity=-0.061 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC--chHHHHHHHHHHhccCCCcchhhHHHHHHHH----Hcc---CCHH
Q 018883 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAF----GNS---GQID 150 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 150 (349)
++|+.+++.++... +-+...|+.--.++...+ +++++++.++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666655542 123344555555555555 6666666666666543 22333444333333 333 5667
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC------hHHH
Q 018883 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE--KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD------LKQM 222 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 222 (349)
+++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ +++..++++.+.++. +...|+.-...+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 7777777777664 336666666666666666666 777777777766644 66666666555555555 6777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh-HHHHHHHHhhCC--CCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018883 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK-LGSVLRFIDNSD--IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 299 (349)
++.++.+.... +-|...|+.....+.+.|+... +..+...+.+.+ -..++..+..+...|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77777777654 5566777777777777776433 455666655432 1236677788888888888888888888888
Q ss_pred Hh
Q 018883 300 QQ 301 (349)
Q Consensus 300 ~~ 301 (349)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=3.8e-09 Score=80.21 Aligned_cols=176 Identities=10% Similarity=0.010 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 018883 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF----AFDKVQAL 85 (349)
Q Consensus 10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 85 (349)
+|.+.|++..+.| ++.++..+...|...+++++|++.|++..+. -+...+..+...+.. + ++++|..+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4566666666654 5666777777777777777777777777654 245556666666665 5 67777777
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccCCC-cchhhHHHHHHHHHc----cCCHHHHHHHH
Q 018883 86 LSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSEDCE-PDVWTMNCTLRAFGN----SGQIDTMEKCY 156 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 156 (349)
|++..+.| +...+..|...|.. .+++++|...|++..+.+.. .....+..+...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77776654 45556666666655 56677777777776665421 124455555555555 55666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 018883 157 EKFQSAGIQPSINTFNILLDSYGKA-G-----HFEKMSAVMEYMQKYH 198 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 198 (349)
++..+.+ .+...+..|...|... | +.++|...|+...+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6666541 1233444455554432 2 5666666666665554
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.21 E-value=2.1e-09 Score=81.38 Aligned_cols=187 Identities=8% Similarity=-0.015 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch-HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018883 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
..+......+...|++++|...|++..+. .|+. ..|... . . .............+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~--~---~--------------~~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT--N---V--------------DKNSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH--H---S--------------CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh--h---h--------------cchhhhhHHHHHHHHHH
Confidence 34444555666777888888877777765 2332 222210 0 0 00001112223447778
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC--hH
Q 018883 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD--LK 220 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 220 (349)
+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 888899999999998888874 347788888888888999999999999888887643 67778878777765543 33
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHH
Q 018883 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
.+...++.... ..|....+.....++...|++++|...|++..+.. |+.....
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~ 194 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQK 194 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHH
Confidence 44555555432 23333344445566677888999999999888754 4544333
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=4.9e-08 Score=77.73 Aligned_cols=236 Identities=10% Similarity=-0.001 Sum_probs=179.0
Q ss_pred HcCC-ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCchHHHHHHHHHH----hc
Q 018883 38 GRSG-LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF--AFDKVQALLSDMSTQGIRPNTVTYNTLIDAY----GR 110 (349)
Q Consensus 38 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 110 (349)
.+.| ..++|+++++.+.... +-+..+|+.--.++...+ ++++++.+++.+..... -+..+|+.--..+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence 3444 4568999999988763 456677888888888888 99999999999988743 3556666544444 44
Q ss_pred c---CchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--
Q 018883 111 A---KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID--TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH-- 183 (349)
Q Consensus 111 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 183 (349)
. +++++++..++++.+.. +-+...|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 4 78899999999999875 557778887777777888888 999999999988644 77788777666777666
Q ss_pred ----HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH-HHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhh
Q 018883 184 ----FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ-MEYLFRLMRSER--IKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 184 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
++++++.++++....+. |...|+.+-..+.+.|+... +..+...+.+.+ -+.+...+..+...+.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 88899999998888755 88999888888888887444 556666665432 23467788889999999999999
Q ss_pred HHHHHHHHhh-CCCCchHHHHHHHH
Q 018883 257 LGSVLRFIDN-SDIMLDTVFFNCLV 280 (349)
Q Consensus 257 a~~~~~~~~~-~~~~~~~~~~~~li 280 (349)
|.++++.+.+ .+ +.....|+..+
T Consensus 277 A~~~~~~l~~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 277 SRTVYDLLKSKYN-PIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHTTC-GGGHHHHHHHH
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHH
Confidence 9999999886 34 34556666544
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=8.5e-10 Score=78.76 Aligned_cols=122 Identities=4% Similarity=-0.091 Sum_probs=59.9
Q ss_pred HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018883 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+...|++++|+..+++..... +.+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3344455555555555554331 1223334445555555555555555555555543 2245555555555555555555
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 018883 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYL-FRLMRS 231 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~ 231 (349)
|...|++..+..+. +...+..+...+.+.|++++|... +++..+
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555554322 344555555555555555443332 344443
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=5.1e-10 Score=79.94 Aligned_cols=142 Identities=2% Similarity=-0.124 Sum_probs=75.3
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018883 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
.+...|++++|+..+....... +.+...+..+...|.+.|++++|...|++..+..+. +...|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3444555666666665554431 112334445556666666666666666666555433 55566666666666666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH-HHHHhhCCCCchHHHHHHHHHHHHccC
Q 018883 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV-LRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
|...|+...+.. +-+...+..+...+...|+.++|.+. ++.+.+..+. ++.+|......+...|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 666666665543 23345555566666666665544433 3555544322 4445554444444444
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=4.1e-09 Score=84.07 Aligned_cols=166 Identities=6% Similarity=-0.109 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH-HHH
Q 018883 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT-LCS 243 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 243 (349)
+.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++.+.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 445566667777778888888888888888776543 66777788888888888888888888776543 33332 222
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccC
Q 018883 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNG 322 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 322 (349)
....+...++.+.|...++......+ .+...+..+...+...|++++|...|+++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23335566777778888888777654 366777788888888888888888888888764321 2567788888888888
Q ss_pred chhhhHHHHHHH
Q 018883 323 MKNHAKEFQDLV 334 (349)
Q Consensus 323 ~~~~a~~~~~~~ 334 (349)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 888887776654
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=8.1e-09 Score=78.36 Aligned_cols=159 Identities=11% Similarity=-0.003 Sum_probs=67.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG----HFEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
+..+...|...+++++|.++|++..+.| +...+..+...|.. + +.++|...|++..+.+ ++..+..+..
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 3333334444444444444444444332 22333333333333 3 4444444444443332 3334444444
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018883 212 AFGR----AGDLKQMEYLFRLMRSERIK-PSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 212 ~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
.|.. .+++++|...|++..+.+.. .+...+..+...|.. .+++++|...++...+.+ .+...+..|...
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMM 171 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 4433 44455555555544443311 013344444444444 445555555555554431 122233444444
Q ss_pred HHcc-C-----ChHHHHHHHHHHHhcC
Q 018883 283 YGRL-K-----CFAEMKGVLEVMQQRG 303 (349)
Q Consensus 283 ~~~~-g-----~~~~a~~~~~~~~~~~ 303 (349)
|... | ++++|...|+...+.|
T Consensus 172 y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 172 FQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4332 1 4555555555555544
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=1e-09 Score=80.73 Aligned_cols=60 Identities=15% Similarity=0.009 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCchhhhHHHHH
Q 018883 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...++
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3344444444444444444444444444432211 12334444444444444444444443
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=3.8e-09 Score=84.26 Aligned_cols=179 Identities=8% Similarity=-0.075 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018883 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
+...+.+.... +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++
T Consensus 103 ~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 103 EAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444443 4455667777888889999999999999988874 347778888899999999999999999988
Q ss_pred HhcCCCCchHHHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-h
Q 018883 195 QKYHYSWTIVTYN-IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-D 272 (349)
Q Consensus 195 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 272 (349)
....+ +..... .....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...+..+....+.. +
T Consensus 178 ~~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 178 PLQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp CGGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred chhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 76643 333222 22334567777888888888887765 5667888889999999999999999999988765432 3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018883 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
...+..++..|...|+.++|...+++...
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 67888899999999999999888877653
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=1.4e-09 Score=95.74 Aligned_cols=154 Identities=10% Similarity=-0.057 Sum_probs=116.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018883 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 84 (349)
.|++++|.+.|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999988763 4567889999999999999999999999998864 4568889999999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc---CCHHHHHHHHHHHHh
Q 018883 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS---GQIDTMEKCYEKFQS 161 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 161 (349)
.+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988874 3367788889999999999999999999988765 44567788888888888 999999999999887
Q ss_pred cC
Q 018883 162 AG 163 (349)
Q Consensus 162 ~~ 163 (349)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 75
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=1.1e-08 Score=78.41 Aligned_cols=186 Identities=13% Similarity=0.056 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch---HHHH
Q 018883 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT---VTYN 102 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 102 (349)
...+..+...+.+.|++++|+..|+++....+..|. ...+..+..++.+.|++++|...|+++.+.... +. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence 345556666777778888888888877764211121 356667777788888888888888887765321 11 1333
Q ss_pred HHHHHHh------------------ccCchHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018883 103 TLIDAYG------------------RAKMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 103 ~l~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
.+..++. ..|++++|...|+++.+.. |+. ..+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence 3333333 3567777777777777652 322 222111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018883 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
......+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|...++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123456778888999999999998887653311 3567788888999999999999998887654
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=2e-09 Score=79.14 Aligned_cols=164 Identities=9% Similarity=0.003 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH-
Q 018883 134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA- 212 (349)
Q Consensus 134 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 212 (349)
..+......+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+ +...+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 345667788899999999999999987764 34778899999999999999999999999876643 44433332222
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-hHHHHHHHHHHHHccCChHH
Q 018883 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML-DTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 291 (349)
+...+....|...+++..+.. +.+...+..+...+...|++++|...++.+.+..+.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 223233445788888887764 4467888999999999999999999999998876543 36688899999999999999
Q ss_pred HHHHHHHHHh
Q 018883 292 MKGVLEVMQQ 301 (349)
Q Consensus 292 a~~~~~~~~~ 301 (349)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=1.9e-07 Score=80.13 Aligned_cols=47 Identities=13% Similarity=-0.029 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018883 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (349)
+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++....
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 34566777777653 446777888888888889999999999988877
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=2.1e-08 Score=76.84 Aligned_cols=206 Identities=8% Similarity=-0.021 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhccCCC-c-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH--HHHHHH
Q 018883 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE-P-DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI--NTFNIL 174 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 174 (349)
..+..+...+...|++++|...|+++...... | ....+..+..++.+.|++++|...|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34444555666667777777777766654211 1 1234555666666667777777777666654321111 123333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCC
Q 018883 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC-VTLCSLVRAYGHAGK 253 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 253 (349)
..++...+.. . ...|..+...+...|++++|...|+++.+.. |+. .........
T Consensus 85 g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l------ 139 (225)
T 2yhc_A 85 GLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL------ 139 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH------
T ss_pred HHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH------
Confidence 3333322110 0 0011112222334566777777777776542 222 111111000
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCchhhhHHHH
Q 018883 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
..+...+ ......+...|.+.|++++|...|+++.+..... ....+..+..++.+.|++++|.+.+
T Consensus 140 ----~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 140 ----VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp ----HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0000000 0111235566777777777777777777652211 1245666777777777777777777
Q ss_pred HHHHHhHHhh
Q 018883 332 DLVEKMDETC 341 (349)
Q Consensus 332 ~~~~~~~~~~ 341 (349)
+.+....+..
T Consensus 208 ~~l~~~~~~~ 217 (225)
T 2yhc_A 208 KIIAANSSNT 217 (225)
T ss_dssp HHHHHCCSCC
T ss_pred HHHHhhCCCc
Confidence 7666554433
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.13 E-value=8.2e-09 Score=90.78 Aligned_cols=153 Identities=9% Similarity=-0.051 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 018883 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55666666666665542 224566666666666777777777777766665432 4566666666777777777777777
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc---CChHHHHHHHHHHHhcC
Q 018883 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL---KCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 303 (349)
++..+.. +.+...+..+..++...|++++|...++...+... .+...+..+...+... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7666543 33456666677777777777777777777666543 2455666677777777 77777777777776654
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=3.6e-07 Score=78.43 Aligned_cols=311 Identities=10% Similarity=-0.030 Sum_probs=193.5
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCC-hhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHH----hcCCh
Q 018883 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL-FDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCL----KAFAF 79 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~ 79 (349)
|+++.+..+|++.... .|+...|...+....+.++ .+....+|+.....-|. +.+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888888888875 4788888888887766653 45567777776653221 346677777766543 24567
Q ss_pred hHHHHHHHHHHhCCCCCchHHH------------------------------------------------HHHHHHHhcc
Q 018883 80 DKVQALLSDMSTQGIRPNTVTY------------------------------------------------NTLIDAYGRA 111 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~------------------------------------------------~~l~~~~~~~ 111 (349)
+.+..+|++.+.....--...| ...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 7788888888763111001111 1111111110
Q ss_pred --C--c---hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018883 112 --K--M---FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 112 --~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
+ + .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+.. |....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcch
Confidence 0 0 233455666666543 445667777777888899999999999999988 334333332 2222221
Q ss_pred HHHHHHHHHHHhcC------------CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-c
Q 018883 185 EKMSAVMEYMQKYH------------YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH-A 251 (349)
Q Consensus 185 ~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 251 (349)
++. ++.+.+.- .......|...+....+.++.+.|..+|..+ ... ..+...|......-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC
Confidence 222 22222110 0112355777777777788899999999998 321 2344444432222222 3
Q ss_pred CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHH
Q 018883 252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
++++.|..+|+...+.... ++..+...+....+.|+.+.|..+|+.+. .....|...+.--...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4699999999998775322 34566677887888999999999999873 25778888888777889999998877
Q ss_pred HHHHH
Q 018883 332 DLVEK 336 (349)
Q Consensus 332 ~~~~~ 336 (349)
+...+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.12 E-value=3.2e-09 Score=85.64 Aligned_cols=61 Identities=7% Similarity=-0.132 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch-HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018883 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD-TVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 300 (349)
++..+...+...|++++|...++...+. +..+. ...+..++..+...|++++|...|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444455555555555555444321 11111 1133334444444455555555555544
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=3.4e-09 Score=85.45 Aligned_cols=200 Identities=8% Similarity=-0.061 Sum_probs=118.8
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018883 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
..|++++|.+++++..+.. +.. .+...++++.|...|++. ...+...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 3577888888888877642 111 011146777777777654 34566778888888
Q ss_pred HHHHHHHhC----CCCC-chHHHHHHHHHHhccCchHHHHHHHHHHhcc----CCCc-chhhHHHHHHHHHccCCHHHHH
Q 018883 84 ALLSDMSTQ----GIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCEP-DVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 84 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
..|.+.... +-.+ -..+|+.+..+|...|++++|...+++.... |-.. ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 877776543 1110 1346666777777777777777777765532 1111 13455666666666 7777777
Q ss_pred HHHHHHHhcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCc-hHHHHHHHHHHHhcCChHHHH
Q 018883 154 KCYEKFQSAGIQ---P--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY----SWT-IVTYNIVIDAFGRAGDLKQME 223 (349)
Q Consensus 154 ~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~ 223 (349)
..|++..+.... + ...++..+...+.+.|++++|+..|++...... .+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777766543100 0 134566666777777777777777766654311 111 124445555556667777777
Q ss_pred HHHHHHH
Q 018883 224 YLFRLMR 230 (349)
Q Consensus 224 ~~~~~~~ 230 (349)
..+++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777665
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.03 E-value=2.5e-07 Score=73.95 Aligned_cols=166 Identities=8% Similarity=-0.102 Sum_probs=107.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCch----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-Cc----HHHHHH
Q 018883 174 LLDSYGKAGHFEKMSAVMEYMQKYHY-SWTI----VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PS----CVTLCS 243 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 243 (349)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777788888888777765432 1221 12334555566667888888888877763211 22 235777
Q ss_pred HHHHHHhcCChhhHHHHHHHHhh----C-CCCc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhc----CCCCC-HHHHH
Q 018883 244 LVRAYGHAGKPEKLGSVLRFIDN----S-DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPD-KVTYR 312 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~ 312 (349)
+...|...|++++|...++.+.+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77788888888888888877663 1 1112 2346777888888888888888888777643 21222 56777
Q ss_pred HHHHHHHccCc-hhhhHHHHHHHHHhHH
Q 018883 313 TMVRAYSTNGM-KNHAKEFQDLVEKMDE 339 (349)
Q Consensus 313 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~ 339 (349)
.+..+|...|+ +++|.+.++...++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 78888888884 5888888777766544
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=1.1e-06 Score=70.83 Aligned_cols=247 Identities=6% Similarity=-0.022 Sum_probs=141.5
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 018883 33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA 111 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (349)
+-......+..++|+++++.+.... +-+..+|+.--.++...+ .+++++.+++.+.... +-+..+|+.-..++.+.
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence 3333444555678888888888763 456667777777777777 5888888888888764 33666777665555554
Q ss_pred -C-chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018883 112 -K-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID--------TMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 112 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
+ ++++++.+++++.+.. +.+...|+.-.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 5 6788888888888765 445566665555554444444 67777777776643 3666666666666555
Q ss_pred CC-------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH--HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 018883 182 GH-------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ--MEYLFRLMRSERIKPSCVTLCSLVRAYGHAG 252 (349)
Q Consensus 182 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (349)
++ ++++++.++++....+. |...|+-+-..+.+.|+... ...++ ...+...+ ..
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~~------------ 277 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-PD------------ 277 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-------------------
T ss_pred cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccc---cccccccc-cc------------
Confidence 54 45666666666555433 55566555544444443200 00000 00000000 00
Q ss_pred ChhhHHHHHHHHhhCC-----CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 253 KPEKLGSVLRFIDNSD-----IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
......+...+.... -.+++..+..++..|...|+.++|.++++.+.+.
T Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 278 -IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 011111111121111 1346777777888888888888888888887643
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=7.7e-08 Score=72.91 Aligned_cols=128 Identities=8% Similarity=-0.032 Sum_probs=80.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 4445556667777777777776653 44666777777777777777777777777666542 256666677777777
Q ss_pred cCChHHHHHHHHHHHhCCCCC---------------cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018883 216 AGDLKQMEYLFRLMRSERIKP---------------SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
.|++++|...++...+..... ....+..+..++...|++++|...++.+.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777766543110 11445555566666666666666666665543
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.99 E-value=5.4e-08 Score=77.89 Aligned_cols=209 Identities=7% Similarity=0.016 Sum_probs=146.6
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHH
Q 018883 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT---YSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~ 89 (349)
..+..+......|+..+...+...+.-.- ..++..-. ..+... +...+..+...|++++|..++++.
T Consensus 32 ~~~s~~e~g~~~~~~~~l~~i~~~l~~~~-----~~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 32 SEVSRIESGAVYPSMDILQGIAAKLQIPI-----IHFYEVLI-----YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHTCCT-----HHHHHTTT-----SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCcCH-----HHHhCCCC-----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555655445688888888877765432 12222111 222333 334467788999999999999998
Q ss_pred HhCC-CCCch----HHHHHHHHHHhccCchHHHHHHHHHHhccCCC-cc----hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018883 90 STQG-IRPNT----VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE-PD----VWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 90 ~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
.+.. ..|+. ..+..+...+...+++++|...+++....... ++ ..+++.+...|...|++++|...++++
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8753 22332 23445777888888999999999999874322 22 236888999999999999999999998
Q ss_pred Hh----c-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-chHHHHHHHHHHHhcCC-hHHHHHHHH
Q 018883 160 QS----A-GIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH----YSW-TIVTYNIVIDAFGRAGD-LKQMEYLFR 227 (349)
Q Consensus 160 ~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~ 227 (349)
.+ . +..+ ...++..+...|.+.|++++|...+++..+.. ..+ -..+|..+..++...|+ +++|...++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 74 1 2122 23478889999999999999999998876432 111 26788889999999995 699999988
Q ss_pred HHHh
Q 018883 228 LMRS 231 (349)
Q Consensus 228 ~~~~ 231 (349)
+...
T Consensus 262 ~Al~ 265 (293)
T 3u3w_A 262 KASF 265 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.98 E-value=1.3e-06 Score=70.48 Aligned_cols=240 Identities=7% Similarity=-0.057 Sum_probs=137.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-chHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc-C-CHH
Q 018883 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS-G-QID 150 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 150 (349)
.+.+..++|+++++.++... +-+..+|+.--..+...| .+++++..++.+.... +-+..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34455567888888888774 225556676666666666 4888888888888765 44566666666555555 5 777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC----
Q 018883 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE--------KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD---- 218 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 218 (349)
+++++++++.+.. +-|...|+.-.-.+.+.|.++ ++++.++++.+.++. |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 8888888887764 336666665555555444444 666777777666544 66666666666655554
Q ss_pred ---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH
Q 018883 219 ---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK--LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 219 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
++++++.++++.... +-|...|+.+-..+.+.|+... ...++ ...+...+. . .....
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~~-~-------------~~~~~ 282 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLNP-D-------------IETVE 282 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-------------------------
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccc---ccccccccc-c-------------chhHH
Confidence 455555555555443 3344555544444444443210 00000 000100000 0 01122
Q ss_pred HHHHHHHhcC-----CCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018883 294 GVLEVMQQRG-----CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 294 ~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
....++...+ -.++...+..++..|...|+.++|.++++.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2222222211 13578888999999999999999999999886
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=1.1e-07 Score=72.07 Aligned_cols=130 Identities=7% Similarity=-0.055 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018883 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (349)
..+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566677788888888888888774 5567788888888888889999988888888764 44677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018883 179 GKAGHFEKMSAVMEYMQKYHYSW---------------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
...|++++|...+++..+..... ....+..+..++...|++++|...++...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88889999988888887764321 12677778888888888989988888887654
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.96 E-value=5.5e-07 Score=71.98 Aligned_cols=167 Identities=7% Similarity=-0.057 Sum_probs=105.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---Cc--hH
Q 018883 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS-----INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS---WT--IV 204 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 204 (349)
.+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456666777777777777776665432211 112333445566677888888888777643211 11 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh---CC-CCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCchH
Q 018883 205 TYNIVIDAFGRAGDLKQMEYLFRLMRS---ER-IKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-----IMLDT 273 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 273 (349)
+++.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|...++...+.. ...-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777788888888888888877752 11 111 12467777888888888888888887765421 01125
Q ss_pred HHHHHHHHHHHccCChHHH-HHHHHHHHh
Q 018883 274 VFFNCLVDAYGRLKCFAEM-KGVLEVMQQ 301 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 301 (349)
.+|..+...|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6777788888888888888 666666543
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.96 E-value=5.1e-07 Score=72.15 Aligned_cols=171 Identities=8% Similarity=-0.094 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCc--H
Q 018883 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT-----IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI---KPS--C 238 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 238 (349)
..+...+..+...|++++|...+.+..+...... ...+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667788999999999999988776543211 12344456667788999999999999875321 111 4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhh---CC-CCc--hHHHHHHHHHHHHccCChHHHHHHHHHHHhcC----CCC-C
Q 018883 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDN---SD-IML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG----CKP-D 307 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~ 307 (349)
.+++.+...|...|++++|...++.+.+ .. ..+ ...++..+...|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5788999999999999999999988762 21 111 23588899999999999999999999887542 111 1
Q ss_pred HHHHHHHHHHHHccCchhhh-HHHHHHHHHhHH
Q 018883 308 KVTYRTMVRAYSTNGMKNHA-KEFQDLVEKMDE 339 (349)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~ 339 (349)
..+|..+..+|...|++++| ...++....+..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 67788899999999999999 777776665543
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.95 E-value=8e-08 Score=69.53 Aligned_cols=133 Identities=8% Similarity=-0.112 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018883 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+...|++++|...++...+.. +.+..++..+..++...|++++|...++...+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 445555556666666666666666665543 33455666666667777777777777776665543 2456666777777
Q ss_pred HccCChHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHccCchhhhHHHHHHHHHhHH
Q 018883 284 GRLKCFAEMKGVLEVMQQRGCKPDKVTYR--TMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
...|++++|...+++....... +...+. .....+...|++++|.+.++....+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 7777777777777777765322 333442 233336667777777777776655543
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.93 E-value=3.8e-08 Score=73.92 Aligned_cols=158 Identities=13% Similarity=-0.030 Sum_probs=99.9
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCchHHHHHHHHHHHhcCC
Q 018883 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----H-YSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~ 218 (349)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... + .......+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567888888855554432 2235667777778888888888888888776552 1 11234566777777788888
Q ss_pred hHHHHHHHHHHHhC----CCCC--cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-chHHHHHHHHHHHHccC
Q 018883 219 LKQMEYLFRLMRSE----RIKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIM-LDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 219 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g 287 (349)
+++|...+++..+. +-.+ ....+..+...+...|++++|...++..... +.. ....++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888776543 2111 2345666777777888888888877776532 111 11234566777777888
Q ss_pred ChHHHHHHHHHHHhc
Q 018883 288 CFAEMKGVLEVMQQR 302 (349)
Q Consensus 288 ~~~~a~~~~~~~~~~ 302 (349)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888777766543
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=1.9e-08 Score=73.89 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH-HHhcCCh-
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS-CLKAFAF- 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 79 (349)
+...|++++|...++...+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 345677788888888777663 4566777778888888888888888888777653 3456667777777 6677777
Q ss_pred -hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018883 80 -DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 80 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
++|...+++..... +.+...+..+..++...|++++|...++++....
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888777763 2345667777777777888888888887777653
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=1.5e-07 Score=68.03 Aligned_cols=129 Identities=12% Similarity=-0.091 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018883 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (349)
..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34555556666677777777777766665432 56666667777777777777777777766553 34456667777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCchHHHH--HHHHHHHHccCChHHHHHHHHHHH
Q 018883 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFF--NCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~ 300 (349)
...|++++|...++.+.+.... +...+ ...+..+...|++++|...++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777665432 33333 233333666777777777776554
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.89 E-value=1.3e-08 Score=80.86 Aligned_cols=194 Identities=9% Similarity=-0.062 Sum_probs=118.0
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+...|++++|+..|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45667778888888888888888888887753 4467788888888888888888888888887763 33567777888
Q ss_pred HHHhccCchHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018883 106 DAYGRAKMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
.++...|++++|...+++..+.. |+. ..+...+....+. ..+. -+........+.+......+.. + ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 88888888888888888876542 211 1111111111111 1111 1222222333334444333322 2 25777
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 018883 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-GDLKQMEYLFRLMRS 231 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 231 (349)
++|.+.++...+..+ .+......+...+.+. +.+++|.++|..+.+
T Consensus 152 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777776665532 1333333333334333 556777777776654
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=1.2e-07 Score=65.18 Aligned_cols=96 Identities=5% Similarity=-0.111 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018883 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
.+......+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++...+.++ .+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 34444555555556666666555555443 33445555555556666666666666655555443 24455555666666
Q ss_pred ccCChHHHHHHHHHHHhc
Q 018883 285 RLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~ 302 (349)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666666554
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.87 E-value=3e-08 Score=74.49 Aligned_cols=121 Identities=12% Similarity=0.019 Sum_probs=57.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHhcCCh
Q 018883 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT----PDCQPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~ 79 (349)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... +..+....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 1124455666666666666666666666655431 00011233455555555556666
Q ss_pred hHHHHHHHHHHhC----CCCC--chHHHHHHHHHHhccCchHHHHHHHHHHh
Q 018883 80 DKVQALLSDMSTQ----GIRP--NTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 80 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
++|...+++.... +..+ ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6665555554432 1011 12234444445555555555555554443
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=1.5e-07 Score=64.73 Aligned_cols=95 Identities=7% Similarity=0.000 Sum_probs=43.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018883 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
.+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.++. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34444444445555555555555444432 224444444444444555555555554444443322 3444444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 018883 215 RAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~ 231 (349)
..|++++|...|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.87 E-value=1e-07 Score=67.72 Aligned_cols=97 Identities=14% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018883 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+.+.|++++|...|+.+.... +.+...|..+..++...|++++|...|+.+.+..+. ++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 344445555555555555555555555443 334455555555555555555555555555554432 444555555556
Q ss_pred HccCChHHHHHHHHHHHhc
Q 018883 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~ 302 (349)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666555554
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=6.1e-08 Score=76.97 Aligned_cols=194 Identities=8% Similarity=-0.016 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018883 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444555555555666666666666555442 2344555555666666666666666666655543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018883 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
+...|++++|...|++..+..+. +...+...+....+. ..+. -+........+.+......+ ..+ ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 66666666666666665543211 100111111111110 0111 11112222223333333322 222 25667777
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHcc-CChHHHHHHHHHHHh
Q 018883 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQ 301 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~ 301 (349)
.+.++...+..+ .+......+...+.+. +.+++|.++|..+.+
T Consensus 155 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777766665432 2333334444444444 556677777766654
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=2.1e-07 Score=72.45 Aligned_cols=127 Identities=6% Similarity=-0.105 Sum_probs=65.4
Q ss_pred HHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHh
Q 018883 103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS--INTFNILLDSYGK 180 (349)
Q Consensus 103 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 180 (349)
.+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34445555566666666666555432 222233344445556666666666665433321 111 2245555566666
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018883 181 AGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
.|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666655332212 2234444455555666666666666666554
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.86 E-value=2e-07 Score=63.66 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018883 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++.+.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 3445555555555556666666555555432 23344555555556666666666666665554432 244555566666
Q ss_pred HHccCChHHHHHHHHHHHhc
Q 018883 283 YGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~ 302 (349)
+...|++++|...++++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=1.2e-07 Score=65.73 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=56.1
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 44455556666666666666666666665542 3345555555566666666666666666655542 22445555555
Q ss_pred HHHhccCchHHHHHHHHHHhcc
Q 018883 106 DAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.++...|++++|.+.+++....
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 5555556666666655555543
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=2.2e-07 Score=64.06 Aligned_cols=118 Identities=8% Similarity=-0.058 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018883 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+..+ .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3444455555555556666666555554432 23445555555556666666666666665555432 234555566666
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCc
Q 018883 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
+...|++++|...+++...... .+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655532 144555555555555444
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=3.7e-07 Score=62.28 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=36.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 018883 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHh
Confidence 333333444444444444444433332 12333333444444444444444444444433321 1233333344444444
Q ss_pred CChHHHHHHHHHHH
Q 018883 217 GDLKQMEYLFRLMR 230 (349)
Q Consensus 217 ~~~~~a~~~~~~~~ 230 (349)
|++++|...++++.
T Consensus 91 ~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 91 GDYDEAIEYYQKAL 104 (125)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444433
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.83 E-value=2.7e-07 Score=63.87 Aligned_cols=60 Identities=7% Similarity=0.071 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHh
Q 018883 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444444444444443331 1123333333333333344444444333333
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.82 E-value=1.5e-07 Score=66.87 Aligned_cols=99 Identities=8% Similarity=0.110 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018883 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
...+..+...+.+.|++++|...|+++....+. +...|..+..++...|++++|...|++..+.. +.+...+..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 445556666666777777777777777666533 56666667777777777777777777766554 3345666667777
Q ss_pred HHhcCChhhHHHHHHHHhhCC
Q 018883 248 YGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~ 268 (349)
+...|++++|...|+.+.+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777766654
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.82 E-value=2.8e-07 Score=63.49 Aligned_cols=89 Identities=10% Similarity=-0.000 Sum_probs=33.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018883 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+.... +...+..+...+...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCC
Confidence 3333334444444444444433331 113333333333344444444444444433333211 23333333333334444
Q ss_pred hHHHHHHHHHH
Q 018883 219 LKQMEYLFRLM 229 (349)
Q Consensus 219 ~~~a~~~~~~~ 229 (349)
+++|...++..
T Consensus 96 ~~~A~~~~~~~ 106 (131)
T 2vyi_A 96 HVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.82 E-value=4.6e-07 Score=70.60 Aligned_cols=129 Identities=9% Similarity=-0.100 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHH
Q 018883 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAY 248 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 248 (349)
...+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3345556667777777777776665544 222244444556667777777777776443321 111 23556667777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 249 GHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
...|++++|+..|++.......| ..........++.+.|+.++|...|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777777776433213 3335555666777777777777777777776
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=7.2e-08 Score=70.76 Aligned_cols=119 Identities=8% Similarity=-0.002 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCCh--hhH
Q 018883 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA-YGHAGKP--EKL 257 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 257 (349)
.|++++|...++...+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3444445555544444332 134445555555555555555555555544432 2233444444444 4455555 556
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
...++.+.+..+ .+...+..+...|...|++++|...|+++...
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 655555555432 23445555666666666666666666666554
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=8.6e-08 Score=68.05 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018883 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++.+....+ .++..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 34455555666666666667766666665543 34555666666666667777777777766665543 24556666666
Q ss_pred HHHccCChHHHHHHHHHHHhc
Q 018883 282 AYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+|...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 677777777777777666654
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=2.5e-07 Score=75.50 Aligned_cols=132 Identities=8% Similarity=-0.129 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018883 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--------------IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455667777777788888888888877776653321 467777777777888888888888777765
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHH-HHHHHHHH
Q 018883 233 RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM-KGVLEVMQ 300 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 300 (349)
. +.+...+..+..++...|++++|...|+.+.+..+. +...+..+..++.+.|++++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 445677777777788888888888888777766532 566777777777777777777 34555554
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=4.3e-08 Score=69.64 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=93.6
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 018883 225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 304 (349)
.++.+.... +.+...+..+...+...|++++|...|+.+....+ .+...|..+..+|...|++++|...|++......
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344444332 33456677788899999999999999999988764 3788899999999999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018883 305 KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 305 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+...+..+..+|...|++++|.+.++...++.+.
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 26788889999999999999999999998887653
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.77 E-value=4.4e-07 Score=74.01 Aligned_cols=130 Identities=8% Similarity=-0.128 Sum_probs=109.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018883 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--------------CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+...+..+...+.+.|++++|...|++..+...... ...+..+..++...|++++|...++.+.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788889999999999999999999987642221 478999999999999999999999999987
Q ss_pred CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHH-HHHH
Q 018883 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDL 333 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~-~~~~ 333 (349)
.+ .+...|..+..+|...|++++|...|++..+... .+...+..+..++...|+.++|.+ .++.
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 3788899999999999999999999999998743 267788889999999999998833 4443
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.77 E-value=2e-05 Score=63.17 Aligned_cols=136 Identities=10% Similarity=0.001 Sum_probs=68.3
Q ss_pred hcCChh-HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc----------hHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018883 75 KAFAFD-KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM----------FAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 75 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
+.|.+. +|+.+++.+.... +-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344443 6777777777653 1233444443333322222 455555555555543 33444555544444
Q ss_pred HccC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018883 144 GNSG--QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH-FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 144 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
...+ .+++++.+++.+.+.. +-|...|+.-...+...|. +++++..++.+.+.++. |...|+.....+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 4444 2556666666665554 2255555555555555555 35566666655555433 5555555444443
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=9.1e-07 Score=60.71 Aligned_cols=97 Identities=8% Similarity=-0.096 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018883 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+......+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344445555555666666666665555443 334455555566666666666666666665554432 445555566666
Q ss_pred HccCChHHHHHHHHHHHhc
Q 018883 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~ 302 (349)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665554
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=6.4e-07 Score=59.74 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=78.0
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--chHHHH
Q 018883 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRP--NTVTYN 102 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 102 (349)
.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 356667778888888888888888888877653 4567777888888888888888888888887763 23 466777
Q ss_pred HHHHHHhcc-CchHHHHHHHHHHhccC
Q 018883 103 TLIDAYGRA-KMFAEMELTLVKMLSED 128 (349)
Q Consensus 103 ~l~~~~~~~-~~~~~a~~~~~~~~~~~ 128 (349)
.+..++... |++++|.+.+++.....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 788888888 88888888888887664
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.3e-06 Score=59.95 Aligned_cols=94 Identities=7% Similarity=-0.116 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018883 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333444444444444444444444443321 34444444444444555555555554444432 2233444444445555
Q ss_pred cCChhhHHHHHHHHhh
Q 018883 251 AGKPEKLGSVLRFIDN 266 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~ 266 (349)
.|++++|...++...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555544443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=2.2e-06 Score=57.65 Aligned_cols=97 Identities=12% Similarity=-0.077 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018883 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++...+..+ .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 344444555555555555555555554432 22344555555555555555555555555554432 2344555555566
Q ss_pred HccCChHHHHHHHHHHHhc
Q 018883 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~ 302 (349)
...|++++|...++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666655544
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=3e-06 Score=56.95 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=43.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018883 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34444444445555555555555544432 223444444444444455555555555444443221 3344444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 018883 215 RAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~ 231 (349)
..|++++|...++...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.65 E-value=9.4e-07 Score=60.79 Aligned_cols=104 Identities=6% Similarity=-0.135 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--c----hHHHHHH
Q 018883 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--L----DTVFFNC 278 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~~~ 278 (349)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++...+..+. + -..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444555555555555555555555443 233455555555555556666655555555432110 0 0234555
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHH
Q 018883 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTY 311 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 311 (349)
+..++...|++++|++.|++.... .||+.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666667777777777777766654 3454433
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.64 E-value=8.1e-07 Score=62.48 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018883 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++.+....+ .++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 45566677788889999999999999988765 45677888888999999999999999999888764 36677888899
Q ss_pred HHHccCChHHHHHHHHHHHhc
Q 018883 282 AYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+|...|++++|...|+.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988876
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=1.2e-07 Score=71.02 Aligned_cols=88 Identities=10% Similarity=-0.120 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018883 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 318 (349)
..+..+..++...|++++|...++.+.+... .+...+..+..+|...|++++|...|++...... -+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 4555566666666666666666666665532 2455666666666677777777777766665532 1445555555555
Q ss_pred HccCchhhhH
Q 018883 319 STNGMKNHAK 328 (349)
Q Consensus 319 ~~~g~~~~a~ 328 (349)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.62 E-value=1.6e-06 Score=60.36 Aligned_cols=100 Identities=9% Similarity=-0.086 Sum_probs=81.2
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018883 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
.+...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...++.+.+..+. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 357778888888888899999999988887764 445678888888888889999999888888876543 677888888
Q ss_pred HHHHccCChHHHHHHHHHHHhc
Q 018883 281 DAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.+|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888889999998888888765
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=8.5e-07 Score=62.35 Aligned_cols=99 Identities=7% Similarity=-0.101 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018883 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
+...+..+...+.+.|++++|...|+......+. +...|..+..++...|++++|...++...... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4455666777788888999999999888877643 67788888888888899999999988887765 445667778888
Q ss_pred HHHhcCChhhHHHHHHHHhhC
Q 018883 247 AYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~ 267 (349)
++...|++++|...++...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888889999998888887764
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=8.4e-07 Score=61.02 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCc----hHH
Q 018883 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPN----TVT 100 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~ 100 (349)
..++..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..+++.++... .++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3456667777777777777777777776653 45566777777777777777777777777665411 111 124
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHhcc
Q 018883 101 YNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
|..+..++...|++++|++.|++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555566666666666666665543
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=2.3e-06 Score=61.80 Aligned_cols=97 Identities=14% Similarity=-0.000 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018883 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.... +...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 334444444445555555555555444432 223444444555555555555555555555444321 344455555555
Q ss_pred HccCChHHHHHHHHHHHhc
Q 018883 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~ 302 (349)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=1.1e-06 Score=60.53 Aligned_cols=110 Identities=5% Similarity=-0.024 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--ch----HHHHH
Q 018883 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LD----TVFFN 277 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 277 (349)
..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++.+...... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344455555556666666666666555443 334455555666666666666666666655443210 11 45666
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018883 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 316 (349)
.+...+...|++++|...|+...+. .|+...+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6777777777777777777777665 345444444433
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=2.1e-06 Score=64.17 Aligned_cols=129 Identities=11% Similarity=-0.067 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018883 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSW---------------TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (349)
+..+...+...|++++|...|++........ ....+..+..++...|++++|...++...+.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 3444444555555555555555554432110 02566667777777777777777777776653 3
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH-HHHHHHHh
Q 018883 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK-GVLEVMQQ 301 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~ 301 (349)
.+...+..+..++...|++++|...++...+..+ -+...+..+..++...++..++. ..+..+..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777888888877777766543 25566666666666666666555 44444443
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3.5e-06 Score=59.34 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=58.8
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD----VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 4455666666666667777777777666654 344 4555566666666666666666666665542 2244555
Q ss_pred HHHHHHHhccCchHHHHHHHHHHhcc
Q 018883 102 NTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
..+..++...|++++|...+++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55566666666666666666665544
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=3.7e-06 Score=58.43 Aligned_cols=101 Identities=10% Similarity=-0.102 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018883 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
+.+...+..+...+...|++++|...|.......+. +...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 346777888888888888888888888888776533 67788888888888888888888888887754 4456778888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 018883 245 VRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
..++...|++++|...++.+.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888877654
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.57 E-value=1.3e-06 Score=63.18 Aligned_cols=103 Identities=13% Similarity=-0.053 Sum_probs=90.4
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018883 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 315 (349)
.+...+..+...+...|++++|...|+...+... .+...|..+..+|...|++++|...+++....... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4566788888999999999999999999988764 37888999999999999999999999999988532 688899999
Q ss_pred HHHHccCchhhhHHHHHHHHHhHHh
Q 018883 316 RAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+|...|++++|.+.++...++.+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999988887653
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.7e-05 Score=66.98 Aligned_cols=197 Identities=8% Similarity=-0.076 Sum_probs=132.3
Q ss_pred HHHHhccCchHHHHHHHHHHhccCCCcc----------------hhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCC
Q 018883 105 IDAYGRAKMFAEMELTLVKMLSEDCEPD----------------VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPS 167 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 167 (349)
...+.+.|++++|.+.|.++.+...... ...+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556788999999999999887642211 1236678888899999999999888866531 1112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhC--C---
Q 018883 168 IN----TFNILLDSYGKAGHFEKMSAVMEYMQKY----HYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--R--- 233 (349)
Q Consensus 168 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--- 233 (349)
.. +.+.+-..+...|+.+.|..++...... +..+ -..++..+...+...|++++|..+++.+... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2222333344567888888888776432 2121 2456777888888899999999888877542 1
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCch--HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018883 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIMLD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
.+....++..+++.|...|++++|...++..... ..++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1122456778888888999999999888876532 21111 34566777778888899998888777654
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=1.4e-06 Score=58.11 Aligned_cols=25 Identities=12% Similarity=-0.039 Sum_probs=9.7
Q ss_pred HHHHHHHHHcc-CChHHHHHHHHHHH
Q 018883 276 FNCLVDAYGRL-KCFAEMKGVLEVMQ 300 (349)
Q Consensus 276 ~~~li~~~~~~-g~~~~a~~~~~~~~ 300 (349)
+..+...+... |++++|.+.++...
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 33333333333 34444443333333
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=5.5e-06 Score=70.06 Aligned_cols=197 Identities=9% Similarity=-0.080 Sum_probs=133.7
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCc
Q 018883 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPD---------------VNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPN 97 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 97 (349)
...+.+.|++++|++.|..+.+......+ ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44567788888888888887765321111 124677888899999999999988876553 11112
Q ss_pred h----HHHHHHHHHHhccCchHHHHHHHHHHhcc----C-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC--C--
Q 018883 98 T----VTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG--I-- 164 (349)
Q Consensus 98 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-- 164 (349)
. .+.+.+-..+...|+++.+..+++..... + ...-..++..+...+...|++++|..++.++...- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22333444555678888888888776542 2 12234567788889999999999999998876431 1
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC-c--hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018883 165 -QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH---YSW-T--IVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 165 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+....++..++..|...|++++|..++++..... ..| . ...+..+...+...+++++|...+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1135577888899999999999999998775431 111 1 2456666677778899999988877664
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=9.5e-06 Score=57.08 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=24.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 68 HRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333444444444444444433331 11333333444444444444444444444433
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.51 E-value=8.6e-07 Score=60.99 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCc----hHH
Q 018883 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPN----TVT 100 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~ 100 (349)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++...... .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3456666666777777777777777766542 34566666666777777777777777776655421 111 445
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHhcc
Q 018883 101 YNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
+..+..++...|++++|...+++..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555556666666666666666666554
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=1.5e-06 Score=59.11 Aligned_cols=92 Identities=11% Similarity=-0.081 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018883 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..+|...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34444455555555555555554432 234444555555555555555555555555544322 3444445555555555
Q ss_pred ChHHHHHHHHHHHh
Q 018883 288 CFAEMKGVLEVMQQ 301 (349)
Q Consensus 288 ~~~~a~~~~~~~~~ 301 (349)
++++|...+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=0.00024 Score=57.02 Aligned_cols=183 Identities=7% Similarity=-0.027 Sum_probs=127.7
Q ss_pred hhhHHHHHHH---HHcCCChh-HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhC
Q 018883 27 TQSFTALLSA---YGRSGLFD-KAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA----------FDKVQALLSDMSTQ 92 (349)
Q Consensus 27 ~~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~ 92 (349)
+..|..+... ..+.|.+. +|+++++.+.... +-+..+|+.--..+...+. +++++.+++.+...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 3445444433 34566655 8999999999873 4455667765554444333 67888999998887
Q ss_pred CCCCchHHHHHHHHHHhccC--chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhcCCCCCHH
Q 018883 93 GIRPNTVTYNTLIDAYGRAK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ-IDTMEKCYEKFQSAGIQPSIN 169 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 169 (349)
. +-+..+|+.-.-++.+.+ .+++++..++++.+.. +.+...|+.-.-++...|. ++++++.++.+.+..+ -|..
T Consensus 104 ~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~S 180 (331)
T 3dss_A 104 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYS 180 (331)
T ss_dssp C-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHH
T ss_pred C-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHH
Confidence 4 447778887776676777 4899999999999876 5577778777777777887 5899999999998864 4777
Q ss_pred HHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018883 170 TFNILLDSYGKA--------------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 170 ~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
.|+.....+.+. +.++++++.+.......+. |...|+-+-..+.+
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 887776666555 3466777777777766543 66666654444443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.49 E-value=7.9e-07 Score=76.10 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=92.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+..++..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 567899999999999998874 4568889999999999999999999999998874 5577888999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHH--HhccCchHHHHHHHH
Q 018883 82 VQALLSDMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLV 122 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 122 (349)
|.+.+++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988763 2244455555555 778899999999888
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.48 E-value=2.2e-06 Score=58.36 Aligned_cols=95 Identities=6% Similarity=-0.175 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 018883 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
..+...+...|++++|...++.+.+..+ .+...|..+..++...|++++|...|++..+.... +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3344445555555555555555555432 24455555555555555555555555555554321 344555555555555
Q ss_pred CchhhhHHHHHHHHHhH
Q 018883 322 GMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 322 g~~~~a~~~~~~~~~~~ 338 (349)
|++++|...++...+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 55555555555554443
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=4.5e-07 Score=61.37 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=66.1
Q ss_pred CCCChHHHHHHHHHHHhcC--CCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018883 4 KCKQPEKAHELFQAMVDEG--CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
..|++++|+..|++..+.+ -+.+..++..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 4688888999998888763 23456678888888889999999999998888763 4567788888888888999999
Q ss_pred HHHHHHHHHhC
Q 018883 82 VQALLSDMSTQ 92 (349)
Q Consensus 82 a~~~~~~~~~~ 92 (349)
|...+++....
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888887765
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=5.5e-07 Score=77.07 Aligned_cols=119 Identities=13% Similarity=-0.090 Sum_probs=73.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018883 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
..+.+.|++++|...+++..+.... +...|..+..++.+.|++++|...+++..+.. +.+...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3455667777777777777665432 56667777777777777777777777776653 344566666777777777777
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHH--HHccCChHHHHHHHH
Q 018883 256 KLGSVLRFIDNSDIMLDTVFFNCLVDA--YGRLKCFAEMKGVLE 297 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 297 (349)
+|...++++.+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776654322 23344444444 666677777777666
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.44 E-value=1.7e-06 Score=61.99 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=33.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018883 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
++..+...+...|++++|...+++.... +..+ ....+..+...+...|++++|.+.++...++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4445555555566666665555554432 1100 12344555556666666666666666555443
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=4e-06 Score=59.94 Aligned_cols=133 Identities=14% Similarity=-0.005 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc----hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-cHH
Q 018883 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WT----IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE----RIKP-SCV 239 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 239 (349)
++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555555555555554332110 00 134555556666666666666666655432 1011 134
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC----CC-CchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS----DI-MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.+..+...+...|++++|...++...+. +. ......+..+...+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5556666777777777777777665432 11 112445677778888888888888888776653
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.38 E-value=1e-05 Score=68.87 Aligned_cols=132 Identities=7% Similarity=-0.103 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018883 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--------------IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
....+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344566777788888888888888888776543211 467778888888888888888888888776
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH-HHHHHH
Q 018883 233 RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG-VLEVMQ 300 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~~~ 300 (349)
. +.+...+..+..++...|++++|...|+.+.+..+ -+...+..+..++.+.++.+++.+ .+..|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44667788888888888888888888888877653 255677777778888887776653 444443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.36 E-value=7.9e-06 Score=69.61 Aligned_cols=126 Identities=11% Similarity=-0.044 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018883 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--------------CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
....+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...++.+.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456778888899999999999999999887532211 578889999999999999999999999887
Q ss_pred CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHH
Q 018883 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
.. .+...|..+..+|...|++++|...|++..+... -+...+..+..++.+.|+.+++.+
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 3788899999999999999999999999998742 256778888888888888887764
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.36 E-value=9.1e-06 Score=67.06 Aligned_cols=91 Identities=9% Similarity=-0.033 Sum_probs=65.1
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018883 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 316 (349)
+...|..+..++.+.|++++|...++.+.+... .+...|..+..+|...|++++|...|++..+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 346677777888888888888888888877653 35677777888888888888888888888776322 4556666666
Q ss_pred HHHccCchhhhHH
Q 018883 317 AYSTNGMKNHAKE 329 (349)
Q Consensus 317 ~~~~~g~~~~a~~ 329 (349)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=1.9e-05 Score=54.08 Aligned_cols=93 Identities=12% Similarity=-0.093 Sum_probs=52.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHH
Q 018883 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVDAY 283 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~ 283 (349)
+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++.+.+..+.. ....+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444555666666666666655432 1111 345555566666666666666666665543221 044555666666
Q ss_pred HccCChHHHHHHHHHHHhc
Q 018883 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~ 302 (349)
...|++++|...|+.+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6677777777777666655
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.35 E-value=1.7e-06 Score=58.55 Aligned_cols=86 Identities=12% Similarity=-0.070 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHH
Q 018883 216 AGDLKQMEYLFRLMRSER--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|...++.+.+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666542 1223455666666666777777777777766665432 4556666666777777777777
Q ss_pred HHHHHHHhc
Q 018883 294 GVLEVMQQR 302 (349)
Q Consensus 294 ~~~~~~~~~ 302 (349)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666655
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.34 E-value=0.00012 Score=63.96 Aligned_cols=174 Identities=6% Similarity=-0.075 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 018883 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH----------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (349)
..++|++.++++.... +-+..+|+.--..+...|+ ++++...++.+.+..++ +..+|+.-.-.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3456788888887764 2355666665555656665 78888888888887655 7788887777777888
Q ss_pred --ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc--------
Q 018883 218 --DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-------- 286 (349)
Q Consensus 218 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 286 (349)
+++++++.++++.+.. +-+..+|+.-...+...| .++++.+.++.+.+..+. +...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6688999998888776 456777887777777788 788888888888887654 777887777776653
Q ss_pred ------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhh
Q 018883 287 ------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNH 326 (349)
Q Consensus 287 ------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 326 (349)
+.++++.+.++........ |...|..+-..+.+.+..++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5678899999988887433 67788887777777666443
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.33 E-value=1.3e-05 Score=57.59 Aligned_cols=64 Identities=8% Similarity=-0.024 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
...|..+..++...|++++|...++.+.+..+ .+...|..+..+|...|++++|...|+.....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 35666677777777777777777777766553 35667777777777777777777777777765
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=1.4e-05 Score=66.02 Aligned_cols=123 Identities=7% Similarity=-0.027 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018883 170 TFNILLDSYGKAGHFEKMSAVMEYMQKY---------------HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
.+..+...+.+.|++++|...|++..+. ..+.+...|..+..++.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4566677788888888888888877651 112246788888899999999999999999998764
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018883 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
+.+...+..+..++...|++++|...++.+.+..+. +...+..+...+...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888999999999999999999998877543 66777777777777777776654
No 188
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=5.8e-05 Score=51.59 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=37.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHH
Q 018883 141 RAFGNSGQIDTMEKCYEKFQSAGIQPSI---NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT---IVTYNIVIDAFG 214 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 214 (349)
..+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...++.+.+..+. + ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHH
Confidence 3344444444444444444443211 11 23334444444444444444444444443211 1 233344444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 018883 215 RAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~ 231 (349)
..|++++|...++.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=1.9e-05 Score=55.62 Aligned_cols=65 Identities=17% Similarity=0.070 Sum_probs=36.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhc-----CCCC-CHHHH----HHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018883 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GCKP-DKVTY----RTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.|+.+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|+..++...++.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 5555555566666666666666555543 1123 33445 5555666666666666666666655554
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=1.6e-05 Score=57.09 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018883 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
...|..+..++.+.|++++|...++..++.. +.+...|..+..++...|++++|...++...+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3456666666666677777776666666543 3445666666666777777777777776666553
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=7.1e-06 Score=66.91 Aligned_cols=149 Identities=11% Similarity=0.005 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018883 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
...+..+...+.+.|++++|...|++.... .|+...+ ...++.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-------~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMF-------QLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHH-------TCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhh-------hhcccHHHHHHHH----------HHHHHHHHHH
Confidence 345667777788888888888888887764 3443311 1112222222111 1125666666
Q ss_pred HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHH
Q 018883 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS-YGKAGHFE 185 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 185 (349)
+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766553 3355666666777777777777777777665542 1133344444333 22344556
Q ss_pred HHHHHHHHHHhc
Q 018883 186 KMSAVMEYMQKY 197 (349)
Q Consensus 186 ~a~~~~~~~~~~ 197 (349)
.+...|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 666666666544
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.21 E-value=0.00017 Score=63.00 Aligned_cols=175 Identities=7% Similarity=-0.045 Sum_probs=133.8
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 018883 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA----------FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (349)
..-++|++.++.+.... +-+..+|+.--.++...++ ++++.+.++.+.+.. +-+..+|+.-.-++.+
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34567899999998763 4566778877777777766 889999999998875 3477788887778888
Q ss_pred cC--chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------
Q 018883 111 AK--MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG-QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA------ 181 (349)
Q Consensus 111 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 181 (349)
.+ +++++++.++++.+.. +-+...|+.-..++.+.| .++++++.++++.+..+ -+...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccc
Confidence 88 6799999999999876 556777887777777888 88899999999888753 3777887777766653
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018883 182 --------GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 182 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
+.++++.+.+++.....+. +...|..+-..+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4568888888888776644 77888877777777666433
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=8.3e-06 Score=66.49 Aligned_cols=150 Identities=12% Similarity=0.033 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018883 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445556666667777777777777766543 22221 112222222221110 1366777777
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-HHccCchh
Q 018883 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRA-YSTNGMKN 325 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~ 325 (349)
+.+.|++++|...++.+.+... .+...|..+..+|...|++++|...|++..+. .| +...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776653 35677777888888888888888888877655 23 33344444433 23345566
Q ss_pred hhHHHHHHHHHhHH
Q 018883 326 HAKEFQDLVEKMDE 339 (349)
Q Consensus 326 ~a~~~~~~~~~~~~ 339 (349)
.+...+..+....+
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 66666666655544
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.18 E-value=0.00013 Score=51.40 Aligned_cols=62 Identities=10% Similarity=-0.111 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhC-------CCCchHHHH----HHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNS-------DIMLDTVFF----NCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.|..+..++...|++++|+..++...+. .+ -+...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6677777777777777777777776664 43 255667 77888888888888888888887654
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=0.00012 Score=50.98 Aligned_cols=84 Identities=13% Similarity=-0.078 Sum_probs=34.7
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh---
Q 018883 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK----AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR--- 215 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 215 (349)
|...+..++|.++|++..+.| +...+..+...|.. .++.++|...|++..+.+ ++..+..+...|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCC
Confidence 333334444444444444432 33333334444433 344444444444444332 23333344444433
Q ss_pred -cCChHHHHHHHHHHHhC
Q 018883 216 -AGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 216 -~~~~~~a~~~~~~~~~~ 232 (349)
.++.++|...|++..+.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHC
Confidence 34444444444444433
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.11 E-value=0.00011 Score=51.14 Aligned_cols=111 Identities=14% Similarity=-0.058 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhH
Q 018883 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK----AFAFDK 81 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 81 (349)
+++++|.+.|++..+.| ++... |...|...+.+++|.+.|++..+. -+...+..+...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45667777777777665 22223 555566666677777777776654 355666666666666 667777
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhc----cCchHHHHHHHHHHhccC
Q 018883 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGR----AKMFAEMELTLVKMLSED 128 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 128 (349)
|..+|++..+.| +...+..|...|.. .++.++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777776654 44555556666655 566666666666666554
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.09 E-value=4.4e-05 Score=65.12 Aligned_cols=124 Identities=9% Similarity=0.000 Sum_probs=70.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---CCC----chHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHH
Q 018883 178 YGKAGHFEKMSAVMEYMQKYH---YSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCS 243 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 243 (349)
+...|++++|..++++..+.. +.+ ...+++.|...|...|++++|..++++..+. | .+-...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777776654321 111 2356666777777777777777766665431 1 1122345666
Q ss_pred HHHHHHhcCChhhHHHHHHHHhh-----CCCC-c-hHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018883 244 LVRAYGHAGKPEKLGSVLRFIDN-----SDIM-L-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
|...|...|++++|..++++..+ .|.. | ...+.+.+..++...+.+++|..++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777666665432 1211 1 223344555556666666777666666654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=4.5e-05 Score=65.08 Aligned_cols=126 Identities=9% Similarity=-0.134 Sum_probs=95.3
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHH
Q 018883 212 AFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFN 277 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 277 (349)
.+...|++++|..++++..+. | .+....+++.+..+|...|++++|..++++..+. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887643 1 1123567899999999999999999999876532 21 12 345789
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018883 278 CLVDAYGRLKCFAEMKGVLEVMQQR-----GCK-PD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
.|...|...|++++|..++++..+. |.. |+ ..+...+-.++...+.+++|+..+..+++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643 322 22 334556667788899999999999888663
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.00 E-value=8.8e-05 Score=49.61 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018883 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 299 (349)
+.|...+++..+.. +.+...+..+...+...|++++|...++...+..+ .+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35777888887654 45678888899999999999999999999887764 35778888999999999999999999988
Q ss_pred Hhc
Q 018883 300 QQR 302 (349)
Q Consensus 300 ~~~ 302 (349)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=6.4e-05 Score=49.76 Aligned_cols=88 Identities=7% Similarity=-0.119 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-------HHH
Q 018883 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-------KVT 310 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~~ 310 (349)
...+..+...+...|++++|...++...+..+ .+...+..+..++...|++++|...+++..... |+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 34445555555556666666666655555432 244555556666666666666666666665542 22 333
Q ss_pred HHHHHHHHHccCchhhhH
Q 018883 311 YRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~ 328 (349)
+..+..++...|+.+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhHhhhH
Confidence 444444444444444443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=5.9e-05 Score=50.48 Aligned_cols=80 Identities=16% Similarity=0.072 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018883 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 10 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 89 (349)
+|++.|++..+.. +.+...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666666543 3456666666777777777777777777666543 344566666666777777777777776666
Q ss_pred HhC
Q 018883 90 STQ 92 (349)
Q Consensus 90 ~~~ 92 (349)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=8.6e-05 Score=49.11 Aligned_cols=64 Identities=6% Similarity=-0.086 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018883 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444445555555555555555555554432 233445555555555555555555555555544
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=2.5e-05 Score=54.89 Aligned_cols=98 Identities=9% Similarity=0.075 Sum_probs=65.8
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCCh----------hHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 018883 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLF----------DKAFSLLEHMKNTPDCQPDVNTYSILIKSC 73 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (349)
+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++..+.. +.+..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence 3456778888888877764 55777777777777777664 47777777777663 44566777777777
Q ss_pred HhcC-----------ChhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018883 74 LKAF-----------AFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 74 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
...| ++++|.+.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 7654 677777777777665 455554444443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=0.00024 Score=44.91 Aligned_cols=78 Identities=13% Similarity=0.007 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018883 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 318 (349)
..+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++...... .+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 4445555555556666666666655554432 2445555566666666666666666666655421 1344444444443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.84 E-value=7.3e-05 Score=52.54 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC----------hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc-
Q 018883 218 DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK----------PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL- 286 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 286 (349)
.+++|...++...+.. +.+...|..+..++...++ +++|+..|++..+.++. +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhc
Confidence 3444444444444333 2334444444444444433 34666777666665543 455666666666655
Q ss_pred ----------CChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018883 287 ----------KCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 287 ----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 316 (349)
|++++|.+.|++..+. .|+...|...+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4788888888888876 566555544444
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=0.00042 Score=43.72 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=5.9
Q ss_pred HHhcCCHHHHHHHHHH
Q 018883 178 YGKAGHFEKMSAVMEY 193 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~ 193 (349)
+...|++++|...+++
T Consensus 19 ~~~~~~~~~A~~~~~~ 34 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQK 34 (91)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHH
Confidence 3333333333333333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.70 E-value=0.00032 Score=45.48 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=54.5
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+-+...+..+..++...|++++|...++.+.+..+. +...|..+..+|...|++++|...|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345677888888899999999999999988877643 5678888899999999999999998887754
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.64 E-value=0.00019 Score=60.16 Aligned_cols=99 Identities=8% Similarity=0.005 Sum_probs=68.8
Q ss_pred hcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhc-----CC-CCC-HHHHHHHH
Q 018883 250 HAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GC-KPD-KVTYRTMV 315 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~ 315 (349)
..|++++|..++++..+. |. .| ...+++.|..+|...|++++|..++++.... |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777787777765431 11 12 2456778888888888888888888877643 21 233 35677888
Q ss_pred HHHHccCchhhhHHHHHHHHHhHHhhhccCCCC
Q 018883 316 RAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 348 (349)
..|...|++++|..++++..++.....++++|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 888888888888888888888887777777663
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.64 E-value=0.00031 Score=45.60 Aligned_cols=64 Identities=19% Similarity=0.059 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 91 (349)
+...+..+..++...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666665542 33445566666666666666666666665543
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.00047 Score=57.89 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=56.0
Q ss_pred HHHHhcCChhhHHHHHHHHhhCC---CC----chHHHHHHHHHHHHccCChHHHHHHHHHHHhc-----C-CCCC-HHHH
Q 018883 246 RAYGHAGKPEKLGSVLRFIDNSD---IM----LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----G-CKPD-KVTY 311 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~~ 311 (349)
..+...|++++|..+++...+.. +. ....+++.+..+|...|++++|..++++.... | -.|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666666554321 11 12345566666666666666666666655432 1 1122 2445
Q ss_pred HHHHHHHHccCchhhhHHHHHHHHHhHHhhhccCCC
Q 018883 312 RTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRP 347 (349)
Q Consensus 312 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 347 (349)
+.|...|...|++++|..++++..++.....++++|
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 666666666666666666666666666655555554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.51 E-value=0.0041 Score=50.34 Aligned_cols=143 Identities=8% Similarity=-0.057 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh---cC--ChHHHH---HHHHHHHh
Q 018883 165 QPSINTFNILLDSYGK--AG---HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR---AG--DLKQME---YLFRLMRS 231 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~a~---~~~~~~~~ 231 (349)
+.+...|..++++... .+ +..+|..+|++..+..+. ....|..+..++.. .+ ...... ..++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4566667766655432 22 346778888887776532 33444433333321 11 111111 11111111
Q ss_pred -CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHH
Q 018883 232 -ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT 310 (349)
Q Consensus 232 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 310 (349)
...+.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1124566777777666667788888888888888775 56777777788888888888888888888876 456665
Q ss_pred HH
Q 018883 311 YR 312 (349)
Q Consensus 311 ~~ 312 (349)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.34 E-value=0.0054 Score=49.63 Aligned_cols=66 Identities=6% Similarity=-0.089 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018883 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+...|++++|.+.+++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3355555555555555566666666666666553 45555555556666666666666666666654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.0012 Score=42.40 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=38.2
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHH-HHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018883 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 303 (349)
...+...|++++|...++.+.+..+. +.. .+..+..+|...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44556667777777777776665432 445 66667777777777777777777776653
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.0022 Score=53.79 Aligned_cols=88 Identities=10% Similarity=-0.092 Sum_probs=67.2
Q ss_pred hcCChHHHHHHHHHHHhC---CCC----CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHHHHHHH
Q 018883 215 RAGDLKQMEYLFRLMRSE---RIK----PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVFFNCLV 280 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li 280 (349)
..|++++|..++++..+. -+. ....+++.+..+|...|++++|..++++..+. |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887642 111 22467889999999999999999999876531 21 23 345789999
Q ss_pred HHHHccCChHHHHHHHHHHHhc
Q 018883 281 DAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
..|...|++++|..++++..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0049 Score=51.75 Aligned_cols=93 Identities=11% Similarity=-0.100 Sum_probs=71.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC---CCC----cHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----CC-Cc-hHHH
Q 018883 210 IDAFGRAGDLKQMEYLFRLMRSER---IKP----SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----DI-ML-DTVF 275 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~ 275 (349)
+..+.+.|++++|..++++..+.. ..| ...+++.+..+|...|++++|..+++++... |. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999887531 122 2467888999999999999999999876531 21 22 3457
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 276 FNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
++.|...|...|++++|..++++..+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999887654
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.11 E-value=0.0049 Score=39.15 Aligned_cols=68 Identities=7% Similarity=-0.010 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018883 235 KPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 303 (349)
+.+...+..+..++...++ .++|..++++..+..+. ++.....+...+.+.|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455666666666654444 57777777777776543 66677777777788888888888888877763
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.02 E-value=0.032 Score=51.20 Aligned_cols=46 Identities=13% Similarity=-0.018 Sum_probs=27.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018883 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556666666654322 24566666666666666666666666655
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.01 E-value=0.012 Score=40.95 Aligned_cols=82 Identities=15% Similarity=0.010 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCc--hHHHHHHHHHHHHccCChHHHH
Q 018883 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG---KPEKLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 293 (349)
...+.+-|.+..+.+ +++..+...+..++++++ +.+++..+++.+.+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555555555 367777777777888877 4557888887777654 23 3445555677778888888888
Q ss_pred HHHHHHHhc
Q 018883 294 GVLEVMQQR 302 (349)
Q Consensus 294 ~~~~~~~~~ 302 (349)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888876
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.94 E-value=0.062 Score=41.82 Aligned_cols=94 Identities=15% Similarity=0.101 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-CChHH
Q 018883 149 IDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKA-----GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA-GDLKQ 221 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 221 (349)
...|...+++..+.... .+...|..+...|.+. |+.++|...|++..+.++.-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45677777777776321 1356788888888884 88999999998888876433477777788888774 88888
Q ss_pred HHHHHHHHHhCCCC--CcHHHHH
Q 018883 222 MEYLFRLMRSERIK--PSCVTLC 242 (349)
Q Consensus 222 a~~~~~~~~~~~~~--~~~~~~~ 242 (349)
+.+.+++....... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 89998888876555 5544333
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.94 E-value=0.042 Score=36.98 Aligned_cols=150 Identities=11% Similarity=0.114 Sum_probs=93.6
Q ss_pred hhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018883 28 QSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 28 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
.....|+.+ +.-.|..++..++..+.... .+..-||-++.-....-+-+-..++++..-+. .|..
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis------ 72 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD------ 72 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH------
Confidence 344556655 55678888889998888764 45666777776666777777777776665432 1221
Q ss_pred HHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018883 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
.+|+......-+-.+ ..+.......+......|.-++..+++..+... .+|++...-.+..+|.+.|+..
T Consensus 73 ----~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 73 ----KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp ----GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred ----hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchh
Confidence 223333333333222 123334555666677777777777777775443 3567777777777888888888
Q ss_pred HHHHHHHHHHhcCCC
Q 018883 186 KMSAVMEYMQKYHYS 200 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~ 200 (349)
+|.+++.+.-+.|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 888888777777653
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.89 E-value=0.0091 Score=37.89 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=37.9
Q ss_pred CchhhHHHHHHHHHcCCC---hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018883 25 ANTQSFTALLSAYGRSGL---FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.++..+..+..++...++ .++|..++++..+.. +-+..+...+...+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555555543333 456666666666543 345555555666666666666666666666655
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.031 Score=51.26 Aligned_cols=102 Identities=8% Similarity=-0.001 Sum_probs=71.7
Q ss_pred HHHHccCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 018883 141 RAFGNSGQIDTMEK-CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 141 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
......+++++|.+ ++.. + ++......++..+.+.|..+.|.++.+.- . . -.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-~----~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-Q----KFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-H----HHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc-------c-h----heehhhhcCCH
Confidence 34456788888866 4422 1 11223377778888899999988766321 1 1 12334578999
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018883 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
+.|.++.+.+ .+...|..+.+.+.+.++++.|.+.|..+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 9999986543 4668999999999999999999999998764
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.83 E-value=0.021 Score=36.33 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=23.2
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018883 143 FGNSGQIDTMEKCYEKFQSAGIQPSIN-TFNILLDSYGKAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (349)
+...|++++|...++++.+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334444444444444444432 11333 4444444444444444444444444433
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.73 E-value=0.014 Score=40.56 Aligned_cols=85 Identities=8% Similarity=-0.088 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC---ChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCchhhhH
Q 018883 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK---CFAEMKGVLEVMQQRGCKP--DKVTYRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 328 (349)
...+.+-|......+. ++..+...+..++++.+ +.+++..+|++..+.+ .| +...+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666554 67788888899999988 6779999999999874 24 3566677777899999999999
Q ss_pred HHHHHHHHhHHh
Q 018883 329 EFQDLVEKMDET 340 (349)
Q Consensus 329 ~~~~~~~~~~~~ 340 (349)
++++.+.+.++.
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 999999988774
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.087 Score=37.62 Aligned_cols=103 Identities=11% Similarity=0.068 Sum_probs=65.6
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018883 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
.....+.|+++.|.++.+.+ .+...|..|.......|+++-|+..|.+... +..+.-.|.-.|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 34455677788887776655 2566788888888888888888777766542 3344445555666
Q ss_pred hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018883 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
.+...++-+.....| -++.....+...|+++++.++|.+
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666665555554444 134455556667777777777744
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.57 E-value=0.042 Score=35.58 Aligned_cols=62 Identities=8% Similarity=-0.037 Sum_probs=28.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAG------IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (349)
+..+...+...++++.|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344444445555555555554443320 1123344445555555555555555555555443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.49 E-value=0.059 Score=34.88 Aligned_cols=65 Identities=5% Similarity=-0.151 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS------DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
......+...+...+++..|...++.+.+. .-.+...++..+..++.+.|+++.|...++++...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344455666666666666666666655432 11235566777777777777777777777777765
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.48 E-value=0.071 Score=36.71 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=41.2
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018883 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 316 (349)
.+++++|.++|+.+.+..-.. ...|-....--.++|+...|.+++...+..+.+| ...+...++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 367778888887775543333 5666666666677888888888888887776554 333333333
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.46 E-value=0.11 Score=35.76 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=37.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch
Q 018883 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (349)
.++.++|.++|+.++..+ +--...|....+--.+.|+...|.+++......+.+|.
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 367777777777776542 22256666666666677788888888877777766543
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.41 E-value=0.04 Score=36.81 Aligned_cols=85 Identities=14% Similarity=0.009 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh---HHHHHHHHhhCCCC-chHHHHHHHHHHHHccCChHHH
Q 018883 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK---LGSVLRFIDNSDIM-LDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a 292 (349)
.....+.+-|......| .++..+-..+..++.++.+... ++.+++.+...+.+ -.....-.|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33445555555555545 3677777778888888877665 77788777765411 1344555677788899999999
Q ss_pred HHHHHHHHhc
Q 018883 293 KGVLEVMQQR 302 (349)
Q Consensus 293 ~~~~~~~~~~ 302 (349)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998888876
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.18 Score=36.00 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=45.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHH
Q 018883 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG 258 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (349)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455555555554443 1445555555555555555555555554321 222333344445555444
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 018883 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
++-+.....|- ++.....+.-.|+++++.++|
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHH
Confidence 44444333321 222333344455555555555
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.22 E-value=0.12 Score=40.20 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=60.8
Q ss_pred hhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc-Cc
Q 018883 43 FDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLK-----AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA-KM 113 (349)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 113 (349)
...|...+++..+. .|+ ...|..+...|.+ .|+.++|.+.|++.++.+..-+..++......+++. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34667777777765 354 5577778877777 388888888888888764322467777777777774 88
Q ss_pred hHHHHHHHHHHhccCCC
Q 018883 114 FAEMELTLVKMLSEDCE 130 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~ 130 (349)
.+++.+.+++.......
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888876544
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.76 E-value=0.26 Score=33.30 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=91.2
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 018883 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
..-.|..++..++..+..... +..-|+.+|.-....-+-+-..++++.+-+. .|. ...|+....
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 445677888888888777653 4555666666555556666666666655432 111 234455555
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
...+-.+ ..+...+...+..+...|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5544433 123355666677778888888888888886443 3467777778888888888888888888888888
Q ss_pred CCC
Q 018883 303 GCK 305 (349)
Q Consensus 303 ~~~ 305 (349)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 764
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=1.1 Score=37.88 Aligned_cols=255 Identities=7% Similarity=0.029 Sum_probs=135.1
Q ss_pred CChHHHHHHHHHHHhc-----CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH----Hhc
Q 018883 6 KQPEKAHELFQAMVDE-----GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC----LKA 76 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 76 (349)
|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+....+..+ .....+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 5677777777665543 1223455577788888888998888787777766544222 2223333332 223
Q ss_pred CChhHH--HHHHHHHHhC--C-CCC---chHHHHHHHHHHhccCchHHHHHHHHHHhcc--CCCcc---hhhHHHHHHHH
Q 018883 77 FAFDKV--QALLSDMSTQ--G-IRP---NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE--DCEPD---VWTMNCTLRAF 143 (349)
Q Consensus 77 ~~~~~a--~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 143 (349)
...+.. ..+.+.+... | +-. .......|...+...|++.+|.+++..+... +.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332221 1111111110 1 111 1223356777888889999998888887643 21111 34566677888
Q ss_pred HccCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchHHHH----HHHHH
Q 018883 144 GNSGQIDTMEKCYEKFQS----AGIQPS--INTFNILLDSYGKAGHFEKMSAVMEYMQKY-HYSWTIVTYN----IVIDA 212 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~ 212 (349)
...+++..|..++.++.. ...+|+ ...+...+..+...+++.+|.+.|.++... ...-+...+. .++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 888898888888887642 222222 234566677777888888888777666432 1111222221 11111
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc--CChhhHHHHHH
Q 018883 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA--GKPEKLGSVLR 262 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~ 262 (349)
..-.+....-..++.........++...+..++.+|... .+++.+...+.
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 112222222223333332222235567777787777643 23444444443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.29 E-value=0.24 Score=33.05 Aligned_cols=81 Identities=9% Similarity=-0.069 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHH---HHHHHHHHhccCCCc--chhhHHHHHHHHHccCCHHHHHH
Q 018883 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE---MELTLVKMLSEDCEP--DVWTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 154 (349)
..+.+-|......|. ++..+-..+..++.++..... ++.+++.+...+ .| .....-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333444443333332 344444444445555443333 555555554442 12 22222333344455555555555
Q ss_pred HHHHHHhc
Q 018883 155 CYEKFQSA 162 (349)
Q Consensus 155 ~~~~~~~~ 162 (349)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.53 E-value=0.21 Score=41.25 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh-----cCCCCCHHHHHHH
Q 018883 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTYRTM 314 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 314 (349)
...++..+...|+++++...+..+....+ .+...|..++.++.+.|+..+|++.|+.+.+ .|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566777788888888888877776553 4777888888888888888888888887654 3888877664443
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.52 E-value=3 Score=38.65 Aligned_cols=259 Identities=9% Similarity=-0.026 Sum_probs=127.1
Q ss_pred HHHcCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------CCchHHHHHHHHH
Q 018883 36 AYGRSGLFDKAFSLLEHMKNTP-DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI-------RPNTVTYNTLIDA 107 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 107 (349)
+....|+.++++.++....... .-.+....-..+.-+.+..|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566777777777776665421 1122233333444455555555566666665544311 0112222223333
Q ss_pred HhccCc-hHHHHHHHHHHhccCCCcchh--hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcC
Q 018883 108 YGRAKM-FAEMELTLVKMLSEDCEPDVW--TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD--SYGKAG 182 (349)
Q Consensus 108 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 182 (349)
++..|. -+++...+..+.... .+... .--.+...+...|+.+....++..+.+.. +..+...+.. ++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 234455555554332 11111 11223334556677776667776665532 2223332333 334567
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018883 183 HFEKMSAVMEYMQKYHYSWTIVTYN--IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
+.+.+..+.+.+.... .|....-. ++..+|+..|+......++..+.... ..+..-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777766532 22222222 23345667777766666777776532 22333333333344456666667777
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHccCCh-HHHHHHHHHHHh
Q 018883 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQ 301 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 301 (349)
++.+.+.+ .|..+.-..+.-+....|.. .++..++..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 76665543 34544444444444444443 456667776654
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.53 Score=42.37 Aligned_cols=54 Identities=13% Similarity=-0.044 Sum_probs=39.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018883 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
...+...|+++-|+.+-++..... +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445566778888888887776543 445677888888888888888887777665
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.41 E-value=4.1e-05 Score=63.40 Aligned_cols=245 Identities=13% Similarity=0.133 Sum_probs=158.1
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHH
Q 018883 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (349)
.+.+|..|..+....++..+|++.|-+. .|+..|..++.++.+.|.+++....+...++.. .++..=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 4567888999988889888888776222 244557788889999999999998887766653 2445556888
Q ss_pred HHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc--------------------CCC
Q 018883 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--------------------GIQ 165 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~ 165 (349)
-+|++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..+... .-.
T Consensus 124 ~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999998765543322 1234444444555555555555554444332211 113
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018883 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
.++.||..+-.+|...+++.-|...--.+.- .+.....++..|-..|.+++.+.+++...... +....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 4677899999999999888777655444332 22223346667888899999999998876432 56678888887
Q ss_pred HHHHhcCChhhHHHHHHHHhhC-CCC------chHHHHHHHHHHHHccCChHHHH
Q 018883 246 RAYGHAGKPEKLGSVLRFIDNS-DIM------LDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
-.|++- ++++..+.++..-.+ +++ -....|..++-.|.+-.+++.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 777654 677666665544322 221 12446777777777777777664
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.40 E-value=3.3 Score=39.80 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=31.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018883 32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 89 (349)
.++..+...+..+-+.++..... .+...--.+..++...|++++|...|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45555666666666665544332 23333345566777788888888877654
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.37 E-value=9.6e-05 Score=61.26 Aligned_cols=248 Identities=14% Similarity=0.125 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018883 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
+..|..|..+..+.+.+.+|++.| ++.+ |+..|..++.+..+.|.+++-.+.+...++..-.| ..=+.++-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHH
Confidence 456888899998988888887655 3332 66788999999999999999999888777664344 344689999
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------CCCc
Q 018883 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--------------------YSWT 202 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~ 202 (349)
|++.++..+.++++. .||..-...+.+-|...|.++.|.-+|..+.... -.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999776554432 3555556667777778888877777766543211 1236
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018883 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
+.||..+-.+|...+.+.-|...--.++-. |+ -...++..|...|.+++.+.+++...... .....+|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 788999988999998888776665444421 21 22346667888999999999998887543 3578899999998
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018883 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
|++- ++++..+-++..-.+ .| .-.+|++|.+.--|.++.-++....+.+
T Consensus 273 YsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred HHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 8886 344444444332211 11 1134555555555555555555444443
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.18 E-value=3.5 Score=38.17 Aligned_cols=295 Identities=9% Similarity=-0.009 Sum_probs=156.6
Q ss_pred HHHHHHHHcCCChhHH-HHH-HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCchHHHHHHHH
Q 018883 31 TALLSAYGRSGLFDKA-FSL-LEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG--IRPNTVTYNTLID 106 (349)
Q Consensus 31 ~~l~~~~~~~~~~~~a-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 106 (349)
..+..++...|--.+. +.. .+++.+. .+....-.+.--+....|+.+++..+++.....+ -.+....=..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3566777777754332 221 2344433 2223333334456778899998888887766521 1222233333445
Q ss_pred HHhccCchHHHHHHHHHHhccCC-------CcchhhHHHHHHH--HHccCCHHHHHHHHHHHHhcCCCCCHHHHH--HHH
Q 018883 107 AYGRAKMFAEMELTLVKMLSEDC-------EPDVWTMNCTLRA--FGNSGQIDTMEKCYEKFQSAGIQPSINTFN--ILL 175 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~ 175 (349)
+.+..|...++..++.......- .+....-..+.-+ +...++ +++.+.+..+....- +...... ++.
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALG 497 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMG 497 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 55666666677777776654321 1222222333333 333444 345555555554321 1111122 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCC
Q 018883 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT--LCSLVRAYGHAGK 253 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 253 (349)
..+...|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+.... .|.... ...+.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 33456788888888887776542 1122222333334457889899999988887642 333222 2234456778888
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCch-hhhHHHHH
Q 018883 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK-NHAKEFQD 332 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~ 332 (349)
.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. ..+...+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 887777888887643 2344444444445556777777777777666543 34444444444444444443 23444444
Q ss_pred HH
Q 018883 333 LV 334 (349)
Q Consensus 333 ~~ 334 (349)
.+
T Consensus 654 ~L 655 (963)
T 4ady_A 654 PL 655 (963)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.15 E-value=4.3 Score=39.02 Aligned_cols=194 Identities=8% Similarity=-0.020 Sum_probs=119.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---------------
Q 018883 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HY--------------- 199 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--------------- 199 (349)
++..+...+..+.+.++... .+.+...--.+..++...|++++|...|.+.... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34444555555555443322 2234444456677889999999999999765210 00
Q ss_pred ---CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch
Q 018883 200 ---SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272 (349)
Q Consensus 200 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (349)
..-..-|..++..+.+.+.++.+.++-+...+.....+ ...|..+++++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 00123467788888899999999988877765432211 236788999999999999999999887765443
Q ss_pred HHHHHHHHHHHHccCChH------------HHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCchhhhHH-HHHHHHHh
Q 018883 273 TVFFNCLVDAYGRLKCFA------------EMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEKM 337 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~------------~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~ 337 (349)
......|+...+..|..+ +..+++..--+. .+...+.-|..|-.-+...|++..|-. +++.+.++
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 456667777777655444 444444332211 111112334445455566777776655 66777776
Q ss_pred HH
Q 018883 338 DE 339 (349)
Q Consensus 338 ~~ 339 (349)
..
T Consensus 1051 ~~ 1052 (1139)
T 4fhn_B 1051 IS 1052 (1139)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.85 Score=41.08 Aligned_cols=127 Identities=9% Similarity=0.064 Sum_probs=69.7
Q ss_pred HHHHHHHhccCc-hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhc------CCCC-CH----
Q 018883 102 NTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ-IDTMEKCYEKFQSA------GIQP-SI---- 168 (349)
Q Consensus 102 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~---- 168 (349)
..++..+...++ .+.|..+++++.......+......++..+...++ --+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344445555555 46677788877765322222222233333333322 22344444443321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018883 169 ------NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 169 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.....=.+.+...|+++.|+.+-++.....+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11122234455678888888888887766433 6788888888888888888888777765
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.01 E-value=0.88 Score=30.61 Aligned_cols=68 Identities=7% Similarity=-0.054 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHHHHhcCCh---hhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 235 KPSCVTLCSLVRAYGHAGKP---EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.|+..+-..+..++.++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 56666666777777777664 356777777766553224555666777888888888888888888876
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.91 E-value=0.5 Score=39.07 Aligned_cols=73 Identities=11% Similarity=0.000 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhc-----cCCCcchhhHHH
Q 018883 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTMNC 138 (349)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 138 (349)
+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34456666777788888887777776653 45677778888888888888888887777654 277777655433
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.40 E-value=0.9 Score=28.76 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=24.4
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555554443
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.11 E-value=1.9 Score=29.38 Aligned_cols=68 Identities=7% Similarity=-0.051 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHhcCChh---hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 235 KPSCVTLCSLVRAYGHAGKPE---KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.|+..+-..+..++.++.+.+ +++.+++.+...+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 566777777777787777644 56677777766543334455556777888888888888888888876
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.05 E-value=1.9 Score=29.04 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018883 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+..+-++.+...++.|++.+....+++|-+.+++..|.++|+-.+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445555555555666666666666666666666666666655544
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.95 E-value=6.2 Score=34.83 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018883 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
..-+..+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..| ......+..++..+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~ 146 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH
Confidence 3344556667777777766654432 23355555556677777788777777666665554 34455667777777
Q ss_pred HccCCH
Q 018883 144 GNSGQI 149 (349)
Q Consensus 144 ~~~~~~ 149 (349)
.+.|..
T Consensus 147 ~~~g~l 152 (618)
T 1qsa_A 147 RASGKQ 152 (618)
T ss_dssp HHTTCS
T ss_pred HHCCCC
Confidence 765544
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.58 E-value=1.8 Score=30.41 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=45.3
Q ss_pred CCCCch--hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018883 22 GCDANT--QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-------NTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 22 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 91 (349)
|..|.. ..+-.-+..+...|.++.|+-+.+.+....+..|+. .++..+..++...+++.+|...|++.+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 444433 344455677888999999988887765432223442 3456677888899999999999998644
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.06 E-value=2.5 Score=28.48 Aligned_cols=62 Identities=8% Similarity=0.083 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHH
Q 018883 218 DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (349)
|.-+..+-++.+....+.|++.+....+++|-+.+++..|.++++-++..- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 334455666666677778888888888888888888888888888776542 22344565554
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.03 E-value=1.9 Score=28.97 Aligned_cols=72 Identities=7% Similarity=-0.139 Sum_probs=53.4
Q ss_pred CCchHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018883 269 IMLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
..|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.+.-++.+.|+++.|.++.+.+.+.++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 34566666667777777665 4568889999887752223556667777999999999999999999887654
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.72 E-value=4.9 Score=33.67 Aligned_cols=95 Identities=8% Similarity=-0.155 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCcHHH--HH
Q 018883 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RIKPSCVT--LC 242 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 242 (349)
+...+...|.+.|+.+.|.+.+.++...... .-...+-..++.+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566777788888888888888887654322 23456666777777778888887777776432 22222211 01
Q ss_pred HHHHHHHhcCChhhHHHHHHHH
Q 018883 243 SLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
.-...+...+++..|...|-..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1112233456666666655444
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.43 E-value=2.7 Score=26.48 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHH
Q 018883 42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 121 (349)
..++|..+-+.+...+ . ...+--+-+..+.+.|++++|..+.+.+. -||...|-.|-. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 4556666666665542 1 22222223345556666666665543332 456665554433 2555556666666
Q ss_pred HHHhccCCCcchhhH
Q 018883 122 VKMLSEDCEPDVWTM 136 (349)
Q Consensus 122 ~~~~~~~~~~~~~~~ 136 (349)
..+..+| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 5555555 4444333
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.15 E-value=2.9 Score=26.41 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=45.8
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHH
Q 018883 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
...++|..+-+.+...+ . ...+--+-+..+.+.|++++|..+.+.+. -||...|-.|-.. +.|..+++...
T Consensus 21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHH
Confidence 34566666666666542 1 22222233445666777777766654433 5666666555433 55666666666
Q ss_pred HHHHhccCCCcchhhH
Q 018883 121 LVKMLSEDCEPDVWTM 136 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (349)
+..+..+| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 65665555 4444444
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.03 E-value=3 Score=26.45 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018883 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (349)
+..+-++.+......|++.+..+.+++|.+.+++..|.++|+-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555555566666666666666666666666666555443
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.74 E-value=4.2 Score=27.75 Aligned_cols=71 Identities=7% Similarity=-0.129 Sum_probs=52.9
Q ss_pred CchHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018883 270 MLDTVFFNCLVDAYGRLKC---FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.+.-++.+.|+++.|.++.+.+.++++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4566666667777877765 4568889999888643323445556667999999999999999999887664
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.47 E-value=15 Score=32.52 Aligned_cols=249 Identities=9% Similarity=-0.033 Sum_probs=128.3
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 018883 33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
-+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..|. .....+..++..+.+.|
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCC
Confidence 34455556666555543321 144555556677778888988878777777766653 35566777777777655
Q ss_pred chHH--HHHHHHHHhccCC-----------Ccchh-hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH---HHHHHH
Q 018883 113 MFAE--MELTLVKMLSEDC-----------EPDVW-TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN---TFNILL 175 (349)
Q Consensus 113 ~~~~--a~~~~~~~~~~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~ 175 (349)
.+.. ...-++.+...+- +++.. ....++....+ ...+..... . ..++.. .+...+
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAF 222 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHh---c--cCCChhhHHHHHHHH
Confidence 4322 3333333333321 11111 11111111111 111111111 1 122222 122223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 018883 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY----NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA 251 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (349)
.-+.+. +.+.|...+....+... .+.... ..+...+...+...++...+....... .+.....-.+....+.
T Consensus 223 ~rlar~-d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 223 ASVARQ-DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence 333333 77888888887765431 232222 222223334442445555555544332 3333334444455577
Q ss_pred CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018883 252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
|+++.|...|..+..... ......--+..++...|+.++|..+|+.+..
T Consensus 299 ~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999988866322 2344444566778888999999888887653
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.99 E-value=10 Score=31.68 Aligned_cols=58 Identities=9% Similarity=-0.165 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC--CCCCchHHHHHHHHHHhccCchHHHHHHHHHH
Q 018883 67 SILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKM 124 (349)
Q Consensus 67 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 124 (349)
..+...+.+.|+++.|.+.+.++... +..--...+-.+++.+...+++..+...+.+.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444445555555555555554432 11222333444444444455555554444443
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.57 E-value=2.6 Score=32.39 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=27.1
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018883 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.+.|+++++++....-.+.. +.|...-..++..+|-.|++++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555554444332 344444555555555555555555555554443
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.24 E-value=14 Score=29.29 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=16.0
Q ss_pred HHHccCchhhhHHHHHHHHHh
Q 018883 317 AYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~ 337 (349)
-|...|+...|..+++.+.+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 355678899999998877654
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.85 E-value=6.9 Score=24.72 Aligned_cols=78 Identities=6% Similarity=-0.017 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018883 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
..++|..+-+-+...+. ...+--.-+..+...|++++|..+.+... .||...|..+.. .+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554432 11111112234445566666655443332 555555544432 35555555555555
Q ss_pred HHHhcC
Q 018883 158 KFQSAG 163 (349)
Q Consensus 158 ~~~~~~ 163 (349)
.+...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555554
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.11 E-value=7.5 Score=24.61 Aligned_cols=78 Identities=9% Similarity=0.018 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018883 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
..++|..+-+-+...+. ...+--.-+..+...|++++|..+.+... .||...|..+.. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554432 11111112234445566666655554432 555555544432 34555555555555
Q ss_pred HHHhcC
Q 018883 158 KFQSAG 163 (349)
Q Consensus 158 ~~~~~~ 163 (349)
.+...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555544
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.80 E-value=22 Score=29.88 Aligned_cols=259 Identities=10% Similarity=0.081 Sum_probs=148.4
Q ss_pred CChhHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCchHH--HHHHHHHHhccCc
Q 018883 41 GLFDKAFSLLEHMKN----TPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVT--YNTLIDAYGRAKM 113 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~l~~~~~~~~~ 113 (349)
|+++.|++.+-.+.+ .............++..|...++++...+.+.-+.+. |..+...+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 677888777755543 2233556777888999999999999988877766544 43333222 1222222222222
Q ss_pred hH--HHHHHHHHHhc--cC-CCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHh
Q 018883 114 FA--EMELTLVKMLS--ED-CEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--GIQPS---INTFNILLDSYGK 180 (349)
Q Consensus 114 ~~--~a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 180 (349)
.+ .-..+.+.... .| +.. .......+...+...|++.+|.+++..+... |.... ...+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22222222211 11 111 2233456788899999999999999998643 22211 3456777889999
Q ss_pred cCCHHHHHHHHHHHHh----cCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCcHHHH----HHHHHHHH
Q 018883 181 AGHFEKMSAVMEYMQK----YHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKPSCVTL----CSLVRAYG 249 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~~l~~~~~ 249 (349)
.+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++... ....+...+ ..++.+..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999988743 222222 245666777788899999998888776532 111122211 22222222
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc--CChHHHHHHHHHH
Q 018883 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL--KCFAEMKGVLEVM 299 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~ 299 (349)
-.+....-..++.........++...|..++.+|... .++..+.+.|...
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 2222222223333322222235777888899988764 4566666655443
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.52 E-value=13 Score=26.22 Aligned_cols=24 Identities=4% Similarity=0.038 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 018883 206 YNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
+..+.+++...+++..|...|++.
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 333444444445555555444443
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.98 E-value=15 Score=26.80 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCc-hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcc
Q 018883 60 QPDVNTYSILIKSCLK--AFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD 132 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 132 (349)
+-|..-....+...-. .+....+..+|..|...|+--. +..|......+...|++.+|..+|+.-++.+-.|-
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4555554444443333 3446678888888877765433 44566667777777888888888888777766663
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=79.57 E-value=23 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhh
Q 018883 31 TALLSAYGRSGLFDKAFSLLEHMK 54 (349)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~ 54 (349)
..++.-|...++.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 344555555566666666665543
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=77.32 E-value=27 Score=28.28 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC--hHHHHHHHHHHHhcCCCCC
Q 018883 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC--FAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~ 307 (349)
...++.-|...++.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 345566666666666666666666543221 22333344444443322 3345566666665554433
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.20 E-value=10 Score=28.99 Aligned_cols=20 Identities=30% Similarity=0.144 Sum_probs=10.9
Q ss_pred HHHHHHcCCChhHHHHHHHH
Q 018883 33 LLSAYGRSGLFDKAFSLLEH 52 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~ 52 (349)
.+...++.|+++....+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34445566776655555543
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.90 E-value=14 Score=28.25 Aligned_cols=205 Identities=12% Similarity=0.060 Sum_probs=96.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCchH---HHHHHHHHHhccCchHHHHHHHHHHhccCCCcch---hhHHHHHH
Q 018883 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV---WTMNCTLR 141 (349)
Q Consensus 68 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~ 141 (349)
+.+...++.|+.+.+..++ +.|..++.. .-...+...+..|+.+-+..++ +.|..++. .-.+ .+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL----RHGADPVLRKKNGAT-PFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCC-HHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCC-HHH
Confidence 4566677888877665554 445444322 1123444555667765444444 34433332 1122 233
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH-------------H
Q 018883 142 AFGNSGQIDTMEKCYEKFQSAGIQPSI---NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV-------------T 205 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~ 205 (349)
..+..|+.+ +++.+.+.|..++. .-++. +...+..|+.+-+.. +.+.+..++.. .
T Consensus 78 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 78 LAAIAGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKF----LYKRGANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHH----HHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHHHH----HHHhCCCcccccccHHHHHhhccCC
Confidence 344556654 44455556654432 22223 334456677654443 44444433321 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH--HHHHH
Q 018883 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF--FNCLV 280 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li 280 (349)
.+ .+...+..|+.+-+..+++.. |..++ ..-.+.+.. .+..++......+++.+.+.|..++... -...+
T Consensus 149 ~t-~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 149 AT-ALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223 (285)
T ss_dssp CC-HHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred Cc-HHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 12 333445566665555444421 33322 222233333 3445665556677777777766554321 11234
Q ss_pred HHHHccCChHHHHHH
Q 018883 281 DAYGRLKCFAEMKGV 295 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~ 295 (349)
...++.|+.+-+..+
T Consensus 224 ~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRL 238 (285)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHH
Confidence 444556665544433
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.43 E-value=32 Score=27.58 Aligned_cols=188 Identities=14% Similarity=0.142 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHHhcCCC----CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018883 7 QPEKAHELFQAMVDEGCD----ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
.+++.++-++.-.+.|-- ---..|.++..=|.+++++++|++++..-.. .+.+.|+...+
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~----------------~ll~~~Q~~sg 74 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ----------------TLLRSGQGGSG 74 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH----------------HHHHCCCcchH
Confidence 344455555555555511 1123456666668888888888887654321 23344554433
Q ss_pred H----HHHHHHHhCCCCCchHHHHHHHHHHhccCc--------hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018883 83 Q----ALLSDMSTQGIRPNTVTYNTLIDAYGRAKM--------FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 83 ~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
- -+++-+.+.++++|......++..+..... ..+|+++-.+ ......-+......+...|.+.+++.
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 3 334555566777777777777777665543 1122222222 11112345566677778888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018883 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+|+..|- .|-.++...|..++.-+...+...+ ++...-..++ -|...++...|..+++...
T Consensus 154 ~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 154 AAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 8877662 2333344566555544444433111 1222222233 3445677777777665554
No 273
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=74.28 E-value=23 Score=26.08 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=9.3
Q ss_pred HHcCCChhHHHHHHHHhhc
Q 018883 37 YGRSGLFDKAFSLLEHMKN 55 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~ 55 (349)
|.+.|.+++|.+++++...
T Consensus 124 Ciek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHTTCHHHHHHHHHHHST
T ss_pred HHHhcchHHHHHHHHHHhc
Confidence 4445555555555544443
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.86 E-value=33 Score=27.50 Aligned_cols=191 Identities=6% Similarity=-0.052 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHhccCCC----cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018883 113 MFAEMELTLVKMLSEDCE----PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (349)
..++.+.-++.-++.|-- --..+|.++..-|.+.+++++|.+++..- ...+.+.|+...+.
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHH
Confidence 344444444444444411 11234444555555555555555544321 12334456555544
Q ss_pred HHH----HHHHhcCCCCchHHHHHHHHHHHhcCChH-HHHHHHHHHHh----CC--CCCcHHHHHHHHHHHHhcCChhhH
Q 018883 189 AVM----EYMQKYHYSWTIVTYNIVIDAFGRAGDLK-QMEYLFRLMRS----ER--IKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 189 ~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
++- +-..+.+.+++......++..+.....-+ .-..+.++++. .| ..-++.....+...|.+.+++.+|
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 433 44455666666666666666665443211 11223333321 11 223444555555666666666666
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018883 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
...|- . +-.++...+..++.-+...+... .++...-..++ -|...++...|..+++.+.+.
T Consensus 156 e~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 156 EKHLV--L--GTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp HHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH--h--cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHH
Confidence 55442 1 22223344433333322222211 11222223333 356667888888888777654
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.76 E-value=31 Score=25.17 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018883 147 GQIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
+....+..+|..|...|+-. -+..|......+...|++.+|..+|+.-.+.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33556666777776665433 34456666666666777777777777666665555
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.34 E-value=49 Score=27.26 Aligned_cols=234 Identities=12% Similarity=0.063 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCchHHH--
Q 018883 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTY-- 101 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 101 (349)
.+...|...|.+.|+.++..+++...+..-+..|- ......++..+.... ..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45677889999999999999998877643221222 234556777766643 333333444333322100 11223
Q ss_pred ----HHHHHHHhccCchHHHHHHHHHHhccCCCcc-----hhhHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCCHHH
Q 018883 102 ----NTLIDAYGRAKMFAEMELTLVKMLSEDCEPD-----VWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--GIQPSINT 170 (349)
Q Consensus 102 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 170 (349)
..+...|...|++.+|.+++.++.+.-...| ...+..-++.|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2578899999999999999888876421212 344566677888999999999999887543 22233333
Q ss_pred HHHH----HHHHH-hcCCHHHHHHHHHHHHh-cCC--CC---chHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCcH
Q 018883 171 FNIL----LDSYG-KAGHFEKMSAVMEYMQK-YHY--SW---TIVTYNIVIDAFGRAGDLKQMEYLFR-LMRSERIKPSC 238 (349)
Q Consensus 171 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~-~~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~ 238 (349)
-..+ ...+. ..+++..|...|-+..+ ..- .| +...|..+.... . ++..+...++. .....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~-~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-L-GQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-T-TCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-c-CCHHHHHHHhccccccccCCccH
Confidence 2211 22345 68899999888765532 111 11 122333332222 2 23233333222 11111124555
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018883 239 VTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
..+..++.++ ..+++.....++....
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 6666666655 4567776666666543
No 277
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=66.07 E-value=47 Score=26.23 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 018883 67 SILIKSCLKAFAFDKVQALLSDMS 90 (349)
Q Consensus 67 ~~l~~~~~~~~~~~~a~~~~~~~~ 90 (349)
..++.-|...|+.++|...++++.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 456666667777777777776653
No 278
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=63.97 E-value=4.8 Score=30.63 Aligned_cols=54 Identities=19% Similarity=0.027 Sum_probs=28.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCchHH-------HHHHHHHHh--ccCchHHHHHHHHH
Q 018883 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVT-------YNTLIDAYG--RAKMFAEMELTLVK 123 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~ 123 (349)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3445566777777777776666655444322 233333322 45665555555544
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=63.87 E-value=52 Score=25.98 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHh
Q 018883 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF--DKVQALLSDMST 91 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~ 91 (349)
...++.-|...|+.++|...++++... .-.......++......++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p---~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLG---EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG---GGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc---chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 467888899999999999999987532 11223333444444444433 335556666653
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=63.56 E-value=34 Score=23.67 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCC
Q 018883 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK--PEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 270 (349)
....++.-|...|+.++|...++++.... .....+...+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45667778888888888888888874211 1112233333344433222 33455666666655543
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.45 E-value=41 Score=25.93 Aligned_cols=202 Identities=10% Similarity=0.022 Sum_probs=98.5
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH---HHHHHHHHHhc
Q 018883 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TYNTLIDAYGR 110 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 110 (349)
+...+..|+.+-+..+++.-.... ..+ -.+.+...+..|+.+-+..++ +.|..++.. -.+. +...+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~---g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~-L~~A~~ 104 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKN--LLE---NEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTA-LYYAVD 104 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGS--CCT---TCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCC--CCC---CCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcH-HHHHHH
Confidence 444556788877766665422211 112 123455566777766554444 455544422 2223 334456
Q ss_pred cCchHHHHHHHHHHhccCCCcchh---hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 018883 111 AKMFAEMELTLVKMLSEDCEPDVW---TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 186 (349)
.|+.+-+..+++. |..++.. -+.+.+...+..|+.+- .+.+.+.|..+ +...-.+.+...+..|+.+-
T Consensus 105 ~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 6776655555444 3333321 21334455556677654 44445555433 21122334455567888887
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018883 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 263 (349)
+..+++.-...... +....+..+...+..|+.+ +.+.+.+.|..++.... .-+..|+.+-+.-+++.
T Consensus 177 v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 177 MILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHc
Confidence 77776654332221 2122222223334556543 44455566766665432 12446666655555544
No 282
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=61.09 E-value=45 Score=24.29 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=24.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 018883 75 KAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
+..+++.|+-++-+|++.| .|.-..-..++.+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4567778888888888877 666555555555555544
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.14 E-value=62 Score=25.62 Aligned_cols=166 Identities=13% Similarity=0.070 Sum_probs=85.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH----HHHHHHhCCCCCchHHHHHH
Q 018883 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA----LLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l 104 (349)
.|.++..=|.+++++++|++++..-.. .+.+.|+...|-+ +++-+.+.+++++......+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455555666677777777777644321 2344455444333 45555666777777777777
Q ss_pred HHHHhccCc--------hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018883 105 IDAYGRAKM--------FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176 (349)
Q Consensus 105 ~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (349)
+..+..... ..+|+++-.+.-. ...-++.....+...|.+.+++.+|...|-. |-.-+...+..++.
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 776655321 1122222221111 1223556677777778888888877765531 11113444544444
Q ss_pred HHHhc---CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018883 177 SYGKA---GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 177 ~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
-+... |...++ +...-..++ -|...++...|..+++...
T Consensus 174 ~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 44433 332221 111111222 2345677777777776653
No 284
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=58.86 E-value=41 Score=23.10 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=25.8
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018883 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.++..+..|..-.+..+...|-
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34455544432 223334444444455566666665554443444443334444444443
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=58.65 E-value=50 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=16.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 018883 279 LVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.+..|.+.|.+++|.++|++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 345577788888888888775543
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.33 E-value=62 Score=24.91 Aligned_cols=144 Identities=12% Similarity=0.020 Sum_probs=68.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcch---hhHHHHHHHHHcc
Q 018883 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV---WTMNCTLRAFGNS 146 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 146 (349)
+...+..|+.+-+..+++ .|..++...-...+...+..|+.+-+..+++ .|..++. .-.+ .+...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t-~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNT-ALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCc-HHHHHHHc
Confidence 444566777766555544 4443333222234455566777765554443 3433322 2222 23344456
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHH
Q 018883 147 GQIDTMEKCYEKFQSAGIQPSIN---TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 222 (349)
|+.+-+.-++ +.|..++.. -+.+.+...+..|+.+-+..++ +.+..+ +...-...+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----SEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----TTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCccccccCCccHHHHHHHcChHHHH
Confidence 6665444433 334433321 1123444455667765444443 334322 221223334445677887777
Q ss_pred HHHHHHHH
Q 018883 223 EYLFRLMR 230 (349)
Q Consensus 223 ~~~~~~~~ 230 (349)
..+++.-.
T Consensus 178 ~~Ll~~ga 185 (285)
T 3kea_A 178 ILLLDYMT 185 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 66666543
No 287
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.29 E-value=64 Score=25.88 Aligned_cols=25 Identities=4% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888887777764
No 288
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=56.69 E-value=66 Score=24.82 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=70.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCC--CcchhhHHHHHHHHHccCC
Q 018883 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 148 (349)
....+.|+++++++....-++.. +-|...-..++..+|-.|+++.|.+-++...+... .|....|..+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~--- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH---
Confidence 34567788888888888777764 44777777788888888999888888877765521 2233445555554211
Q ss_pred HHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhc
Q 018883 149 IDTMEKCYEKFQSAGI-----QPSINTFNILLDSYG--KAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 197 (349)
=.++..-+- .....-...++.+.. ..|+.++|..+-..+.+.
T Consensus 81 -------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 -------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111222111 112334445555544 458888888887777553
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.37 E-value=42 Score=22.40 Aligned_cols=25 Identities=12% Similarity=0.386 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 018883 206 YNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556677777777777777777764
No 290
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=56.33 E-value=55 Score=23.78 Aligned_cols=38 Identities=21% Similarity=0.054 Sum_probs=25.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 018883 75 KAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
+..+++.|+-++-+|++.|-.|.-..-..++.+.-..|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45678888888888888876666655555555554444
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.26 E-value=49 Score=23.23 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCc-hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcc
Q 018883 82 VQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD 132 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 132 (349)
...+|..|...|+--. +..|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4456666666654332 33445555556666666666666666666655553
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.94 E-value=47 Score=22.93 Aligned_cols=65 Identities=14% Similarity=0.330 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 018883 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD--LKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 236 (349)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345666666677777777777766422111 12233333334433222 334555666665555433
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.39 E-value=30 Score=24.64 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=8.6
Q ss_pred HHcCCChhHHHHHHH
Q 018883 37 YGRSGLFDKAFSLLE 51 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~ 51 (349)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345666666665554
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.28 E-value=48 Score=22.76 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=34.5
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018883 193 YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+.+.|..++. --..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34555655433 23344555555556667777777776665555666666666666666654
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.97 E-value=50 Score=22.86 Aligned_cols=84 Identities=12% Similarity=0.114 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-hHHHHHHHHHHhccCchHHHHHHHH
Q 018883 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLV 122 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 122 (349)
+++.+.|..... .+-|..-....+...-.. +.+..+|..|...|+--. +..|......+-..|++.+|..+|+
T Consensus 52 Erc~~~f~~~~~---YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKK---YHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGG---GTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccccc---ccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555544333 255666555555443333 347889999998876543 4567778888888999999999999
Q ss_pred HHhccCCCcch
Q 018883 123 KMLSEDCEPDV 133 (349)
Q Consensus 123 ~~~~~~~~~~~ 133 (349)
.-++.+-.|-.
T Consensus 126 ~Gi~~~A~P~~ 136 (152)
T 4a1g_A 126 RGIQNQAEPRE 136 (152)
T ss_dssp HHHHTTCBSHH
T ss_pred HHHHcCCccHH
Confidence 99888777754
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.33 E-value=67 Score=24.17 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=9.9
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 018883 70 IKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~ 89 (349)
+..+....++++|..++++.
T Consensus 25 LDv~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33444555555555555444
No 297
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=54.13 E-value=42 Score=22.53 Aligned_cols=62 Identities=6% Similarity=0.055 Sum_probs=36.3
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018883 228 LMRSERIKPSCVTLCSLVRAYGHAG-KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-..
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3455666666443 33455555555 56678888888777665556655555555566555443
No 298
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=53.88 E-value=47 Score=22.27 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=35.8
Q ss_pred HHhcCCCCchHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018883 194 MQKYHYSWTIVTYNIVIDAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 44556554433 233445555555 56677888888777665566666666666666666543
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=53.84 E-value=34 Score=23.34 Aligned_cols=59 Identities=7% Similarity=-0.010 Sum_probs=30.4
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018883 228 LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.++..+..|..--+..+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445566655432 23334444444 55677777776665554455554444455555444
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.36 E-value=70 Score=24.08 Aligned_cols=90 Identities=13% Similarity=-0.058 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCC----chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018883 174 LLDSYGKAGHFEKMSAVMEYMQKY--HYSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 366777888888888888776542 1111 11111222222223223333444444442 2 3445555666677
Q ss_pred HHhcCChhhHHHHHHHHhh
Q 018883 248 YGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~ 266 (349)
+.+.|+.++|..+|-....
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777888877777765554
No 301
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=53.36 E-value=17 Score=20.31 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 018883 9 EKAHELFQAMVDEGCDANTQSFTALLSAY 37 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 37 (349)
++|.+.|.+|++..-.++..+|...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665443334455666666655
No 302
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=53.13 E-value=46 Score=22.83 Aligned_cols=61 Identities=2% Similarity=0.026 Sum_probs=32.3
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCCh
Q 018883 228 LMRSERIKPSCVTLCSLVRAYGHAG-KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-.
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3445566555432 23444444444 5556777777776655545555544455555555543
No 303
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=52.84 E-value=46 Score=22.70 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=34.3
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018883 193 YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+.+.|..++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345556654433 233344444445 567777777777666555666665566666666643
No 304
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=52.39 E-value=54 Score=22.50 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=37.2
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018883 193 YMQKYHYSWTIVTYNIVIDAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
.+.+.|..++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3455666544332 33444554554 56677888888777665566666666666677666543
No 305
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=51.69 E-value=36 Score=20.23 Aligned_cols=59 Identities=5% Similarity=0.113 Sum_probs=30.7
Q ss_pred HhhCCCCchHHHHHHHHHHHHccC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCc
Q 018883 264 IDNSDIMLDTVFFNCLVDAYGRLK-CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 334454444333 23444444443 444566666666665544556666666666665554
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=51.35 E-value=71 Score=23.60 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=13.1
Q ss_pred HHHHhcCChhhHHHHHHHHhhC
Q 018883 246 RAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
..|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3455666666666666665543
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.95 E-value=55 Score=22.24 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=20.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018883 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3333344444555555555544434444444444444444443
No 308
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=50.89 E-value=10 Score=21.26 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=19.5
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCH
Q 018883 40 SGLFDKAFSLLEHMKNTPDCQPDV 63 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~ 63 (349)
.-+++.|...|..+...+.++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 448999999999998877777754
No 309
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.72 E-value=59 Score=22.48 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018883 152 MEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 152 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
+.++|..|..+|+-. -+..|......+...|++.+|..+|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555554332 23444555555555555555555555555554444
No 310
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=50.60 E-value=31 Score=22.97 Aligned_cols=45 Identities=0% Similarity=-0.140 Sum_probs=23.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018883 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444455555666666666655444444444444444544443
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=50.35 E-value=97 Score=24.84 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhh
Q 018883 30 FTALLSAYGRSGLFDKAFSLLEHMK 54 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (349)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4667777888888888888887774
No 312
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.27 E-value=48 Score=23.16 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=9.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhc
Q 018883 140 LRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
+..+...+..-.|.++++.+.+.
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHhh
Confidence 33333333444444444444443
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.02 E-value=54 Score=21.83 Aligned_cols=65 Identities=14% Similarity=0.330 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 018883 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD--LKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 236 (349)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345666666677777777777666422111 12233333334433321 244555666665555433
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.95 E-value=31 Score=24.61 Aligned_cols=6 Identities=33% Similarity=0.351 Sum_probs=2.3
Q ss_pred cCCHHH
Q 018883 181 AGHFEK 186 (349)
Q Consensus 181 ~~~~~~ 186 (349)
.|+.+-
T Consensus 82 ~~~~~~ 87 (201)
T 3hra_A 82 QGRTEI 87 (201)
T ss_dssp TTCHHH
T ss_pred cCCHHH
Confidence 344333
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=49.92 E-value=28 Score=21.82 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018883 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 84 (349)
.+++.+.+.|+ .+......+-. .......+.|.++++.+...+ ..+|..++.++...++..-|..
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG-----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG-----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC-----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC-----hHHHHHHHHHHHHcCcHHHHHH
Confidence 36777777763 23333332221 101246888999999888763 2577788888877676665543
No 316
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=49.71 E-value=28 Score=23.53 Aligned_cols=46 Identities=2% Similarity=-0.055 Sum_probs=24.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018883 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
.++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444454555555666666666655544454444444444444443
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.41 E-value=59 Score=22.10 Aligned_cols=60 Identities=0% Similarity=-0.022 Sum_probs=35.5
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018883 228 LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
.+.+.|++++..= ..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3455666665432 33445555556666778888887766655555555555566655553
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.00 E-value=46 Score=24.48 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=13.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC
Q 018883 70 IKSCLKAFAFDKVQALLSDMSTQGIR 95 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 95 (349)
+...+..|+.+.+..+++.+.+.|..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 33445556666666565555544433
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.85 E-value=65 Score=22.46 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=30.4
Q ss_pred HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCh
Q 018883 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+.|..++. --..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444555433 2334445555555556666666666554 4444555554455555555543
No 320
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.76 E-value=67 Score=22.55 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=45.2
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHH
Q 018883 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVT 100 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 100 (349)
+.+.++|..|...+--.--...|......+-..|++.+|.++|..-++.+-.|....
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 447778888887643355667788888999999999999999999999887776543
No 321
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.74 E-value=40 Score=24.71 Aligned_cols=20 Identities=0% Similarity=-0.200 Sum_probs=9.8
Q ss_pred HHHHhcCChhhHHHHHHHHh
Q 018883 246 RAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~ 265 (349)
....+.|+.+-+..+++...
T Consensus 215 ~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHcCcHHHHHHHHHhhh
Confidence 33445566665555554433
No 322
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=48.47 E-value=79 Score=23.26 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=26.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 018883 75 KAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
+..+++.|+-++-+|++.|-.|.-..-..++.+.-..|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45678888888888888877666666666666655544
No 323
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=47.25 E-value=74 Score=22.60 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=14.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 018883 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 69 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
.+...+..++.+.-.++.+.+++.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33444445555444455555555555444
No 324
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.16 E-value=48 Score=24.27 Aligned_cols=9 Identities=0% Similarity=0.095 Sum_probs=3.7
Q ss_pred HhcCChhHH
Q 018883 74 LKAFAFDKV 82 (349)
Q Consensus 74 ~~~~~~~~a 82 (349)
++.|+.+.+
T Consensus 17 ~~~g~~~~~ 25 (240)
T 3eu9_A 17 TQYGIYERC 25 (240)
T ss_dssp HHTTCHHHH
T ss_pred HHcCChHHH
Confidence 344444333
No 325
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=46.91 E-value=1.3e+02 Score=25.30 Aligned_cols=55 Identities=5% Similarity=-0.132 Sum_probs=33.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhCCC
Q 018883 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD-----LKQMEYLFRLMRSERI 234 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 234 (349)
+.++.+.|...+.+|.+.|..|....-..+..+.-..|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 456788888888888887776655555555555555553 2334455555555564
No 326
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.74 E-value=45 Score=22.21 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018883 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 345555555666778888888777665566666666666677666543
No 327
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=46.15 E-value=1.2e+02 Score=24.91 Aligned_cols=231 Identities=7% Similarity=-0.051 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---chHHHHHHHHHHhccC-chHHHHHHHHHHhccCCCcchhhH--
Q 018883 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRP---NTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTM-- 136 (349)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 136 (349)
.+...+...|.+.|+.++..+++...... +..| .......++..+.... ..+.-.++..+..+.. ...-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34567888899999999999888776442 1111 3445667777776653 3344444444443321 1111222
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHH
Q 018883 137 ----NCTLRAFGNSGQIDTMEKCYEKFQSAGIQP-----SINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--YSWTIVT 205 (349)
Q Consensus 137 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 205 (349)
..+...|...|++.+|.+++..+.+.=-.. -..++..-+..|...++...+...+....... +.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 257888999999999999998887641111 13346666788899999999999998775432 2233332
Q ss_pred HHHH----HHHHH-hcCChHHHHHHHHHHHhC-C-C-CCc---HHHHHHHHHHHHhcCChhhHHHHHH-H-HhhCCCCch
Q 018883 206 YNIV----IDAFG-RAGDLKQMEYLFRLMRSE-R-I-KPS---CVTLCSLVRAYGHAGKPEKLGSVLR-F-IDNSDIMLD 272 (349)
Q Consensus 206 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~-~-~~~~~~~~~ 272 (349)
...+ ...+. ..+++..|...|-+..+. . . .|. ...|..+ .+ .-.++..+...++. . .... ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~a-Ll~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CK-IMLGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HH-HHTTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HH-HHcCCHHHHHHHhcccccccc-CCcc
Confidence 2221 22345 789999998887665421 1 0 121 1223222 22 22334333333332 1 1212 3466
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH
Q 018883 273 TVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~~ 299 (349)
...+..++.+|. .+++.+...+++..
T Consensus 256 i~~l~~L~~a~~-~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 256 IDAMKSVAEASH-KRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 666666666654 45666666665544
No 328
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.03 E-value=42 Score=22.68 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018883 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 207 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4455566666667778888888877766666666666667777766543
No 329
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.59 E-value=61 Score=23.82 Aligned_cols=84 Identities=10% Similarity=-0.024 Sum_probs=37.6
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHH--HHHHHHHHh
Q 018883 35 SAYGRSGLFDKAFSLLEHMKNTPDCQP---DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVT--YNTLIDAYG 109 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 109 (349)
...+..|+.+.+..+++.+.+.+. .+ +..-. +.+...+..|+.+-+. .+.+.|..++... -...+...+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~g~-t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGR-ELDIYNNLRQ-TPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC-CSCCCCTTSC-CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CCCcccccCC-CHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHH
Confidence 334556777766666664433211 11 11111 2334445566654333 3344554443211 112333344
Q ss_pred ccCchHHHHHHHHHH
Q 018883 110 RAKMFAEMELTLVKM 124 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~ 124 (349)
..|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 566666555555544
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.87 E-value=15 Score=27.86 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=11.7
Q ss_pred HHHHccCchhhhHHHHHHHHH
Q 018883 316 RAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~ 336 (349)
...++.|..+-+..+++.-..
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCC
Confidence 344556777666665554433
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.42 E-value=2.2e+02 Score=26.80 Aligned_cols=60 Identities=7% Similarity=-0.024 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCC-----------------------CchHHHHHHHHHHHHccCChHHHHHHHHH
Q 018883 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDI-----------------------MLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
-.+.++|...|++++|...|+++-. |+ ......|..++..|-+.+-++.+.++-+.
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455666667777777776665421 10 00122455566666666666666665555
Q ss_pred HHhc
Q 018883 299 MQQR 302 (349)
Q Consensus 299 ~~~~ 302 (349)
.++.
T Consensus 923 AI~~ 926 (950)
T 4gq2_M 923 ADAS 926 (950)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 5543
No 332
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.90 E-value=87 Score=21.90 Aligned_cols=52 Identities=12% Similarity=-0.003 Sum_probs=29.0
Q ss_pred hcCChhhHHHHHHHHhhCCCCc--hHHHHHHHHH-H-----HHccCChHHHHHHHHHHHh
Q 018883 250 HAGKPEKLGSVLRFIDNSDIML--DTVFFNCLVD-A-----YGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 301 (349)
..|++-+|-++++.+=.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3366666766666665443334 4455555555 1 2345666666666655543
No 333
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.39 E-value=1.1e+02 Score=22.83 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhhCCCCc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 018883 255 EKLGSVLRFIDNSDIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 306 (349)
+....+|..|...++-. -...|......+-..|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 56777888887765543 34567777777888888888888888888877666
No 334
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.71 E-value=1e+02 Score=25.36 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCCchhh--HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018883 13 ELFQAMVDEGCDANTQS--FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMS 90 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 90 (349)
++++.+.+.|..++... ....+...+..|+.+-+..+++.-.... ..+... .+.+...+..|+.+-+.-++
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g-~t~L~~A~~~g~~~~v~~Ll---- 100 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN--AKAKDD-QTPLHCAARIGHTNMVKLLL---- 100 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTS-CCHHHHHHHHTCHHHHHHHH----
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCC-CCHHHHHHHCCCHHHHHHHH----
Confidence 34555556665554321 1223444556677766666655422111 111111 12344455666665444443
Q ss_pred hCCCCCchHH--HHHHHHHHhccCchHHHHHHHH
Q 018883 91 TQGIRPNTVT--YNTLIDAYGRAKMFAEMELTLV 122 (349)
Q Consensus 91 ~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 122 (349)
+.|..++... -...+...+..|+.+.+..+++
T Consensus 101 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3343333211 1112333445566655555544
No 335
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.26 E-value=1.4e+02 Score=23.68 Aligned_cols=53 Identities=4% Similarity=-0.050 Sum_probs=34.8
Q ss_pred ChhhHHHHHHHHhhCCCCchHH--HHHHHHHHHHccCChHHHHHHHHHHHhcCCC
Q 018883 253 KPEKLGSVLRFIDNSDIMLDTV--FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 305 (349)
+..+..++-..+...++.|... +...-+....+.+++..|..+-+++.+.+..
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3344555555666666655332 3455667778888888888888888887543
No 336
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.03 E-value=2e+02 Score=24.85 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCH--HHH-HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018883 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGI-QPSI--NTF-NILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
-...+|.+++.|...+.++.|..+..+..--.. .++. ..| ..+.+.+.-.+++.+|.+.+.......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 356789999999999999999999988742110 1121 122 234566677899999999988876653
No 337
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.55 E-value=64 Score=19.07 Aligned_cols=32 Identities=0% Similarity=-0.012 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018883 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
.-.+.++++.+.+.+...+..|....+..+..
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 33444455444443333333333333333333
No 338
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.45 E-value=1.1e+02 Score=21.89 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=39.7
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018883 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
+...-...+.++.+.++.+ +...+..+.+ .++..+-...+.++.+.++.+ +...+..+.. .++...-...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 3333344444444444432 2233333332 235555555555555555533 2333333332 234445555555
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 018883 212 AFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~ 231 (349)
++.+.+. ..+...+..+.+
T Consensus 166 aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCc-hhHHHHHHHHHh
Confidence 5555554 334444444443
No 339
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=37.15 E-value=1.2e+02 Score=22.07 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=29.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---------chHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018883 175 LDSYGKAGHFEKMSAVMEYMQKYHYSW---------TIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+...+..|+.+.+..+++.+.+.|..+ +....+. +...+..|+.+-+..+++.-.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCc
Confidence 334456667776666666666655322 2222233 333345677666666665543
No 340
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.82 E-value=1.9e+02 Score=24.30 Aligned_cols=89 Identities=9% Similarity=-0.081 Sum_probs=49.9
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC-----hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCch
Q 018883 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC-----FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 324 (349)
+.++.+.|..++..|.+.|..|....-..++.+.-.-|. ...|...++.....|.+--.......+-.++.+-+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pks 346 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKS 346 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcc
Confidence 457888899999999888877665555555555554443 234555566666666432222232222233444444
Q ss_pred hhhHHHHHHHHHhH
Q 018883 325 NHAKEFQDLVEKMD 338 (349)
Q Consensus 325 ~~a~~~~~~~~~~~ 338 (349)
..+-..++...+.-
T Consensus 347 n~~~~a~~~a~~~~ 360 (447)
T 3pvs_A 347 NAVYTAFKAALADA 360 (447)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45555555444433
No 341
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=36.58 E-value=2.7e+02 Score=26.08 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=10.4
Q ss_pred HHHHHHHhccCchHHHHHHHHHHh
Q 018883 102 NTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
..++.+++...+.....++++...
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 334444444444444444444433
No 342
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=35.64 E-value=1.2e+02 Score=21.66 Aligned_cols=25 Identities=16% Similarity=-0.116 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 018883 170 TFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
.++.+...+...|+.++|+..+..-
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 3455556666777777777766543
No 343
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.46 E-value=72 Score=21.39 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=8.5
Q ss_pred HHHhcCChhHHHHHHHH
Q 018883 72 SCLKAFAFDKVQALLSD 88 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~ 88 (349)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34445555555555544
No 344
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=34.67 E-value=67 Score=24.34 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=10.1
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 018883 73 CLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~ 92 (349)
.++.|+.+.+..+++.....
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~ 39 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRS 39 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHhhc
Confidence 34455555555555544444
No 345
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=33.62 E-value=80 Score=20.83 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=49.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
|.+.+++++++.+. -....|.-.|...+.+++.+-|.++++..... -+...|.+.+..|...=+++-
T Consensus 16 ykkN~rw~qSI~L~---------KkDkLykDAietAa~S~d~elaEeLL~yFVe~----g~kEcF~A~LytCYdLlrpDv 82 (125)
T 3qil_A 16 PRGSHMWKQSVELA---------KKDSLYKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDV 82 (125)
T ss_dssp SSSCCCCSSCCCCC---------SCCCCSSHHHHTTTSSCCSHHHHHHHHHHTTS----CSHHHHHHHHHHHTTCSCTTH
T ss_pred hhccccHHHHHHHH---------HhcccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHHhccChHH
Confidence 45556666554332 12334666677788888888888888888875 367788888888888878877
Q ss_pred HHHH
Q 018883 82 VQAL 85 (349)
Q Consensus 82 a~~~ 85 (349)
++++
T Consensus 83 VLEl 86 (125)
T 3qil_A 83 VLEL 86 (125)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.39 E-value=2.2e+02 Score=24.13 Aligned_cols=107 Identities=11% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 018883 14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG 93 (349)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 93 (349)
.+.-..+.|++.-...|..-...+...|++++|-++--...+ |+-.+..+.+.+-..-...|...-...+|..+.+.|
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Q ss_pred CCCchHHHHHHHHHHhccCchHHHHHHHHH
Q 018883 94 IRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123 (349)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 123 (349)
..+..-=--+++.-...|+.+-..+++.+
T Consensus 426 -~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 426 -QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -ccchHHhhHHhHHHHhccHHHHHHHHHhc
No 347
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=32.21 E-value=1.9e+02 Score=22.94 Aligned_cols=115 Identities=8% Similarity=0.031 Sum_probs=61.7
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH----HHccCChHHHHHHHHHH
Q 018883 224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA----YGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~ 299 (349)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|...-..+.-+++.. ..+..++++...+++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 45566666777777777777777777666688888888888776643211121222222 12234666666665542
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhh
Q 018883 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 300 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
.. ..+......++.-.......++..++-.....+++..
T Consensus 289 ~p---~~~~~di~~li~~A~~l~~s~~l~~~e~ey~~l~~~~ 327 (331)
T 3qye_A 289 LP---NLGLVQMEKTINQVFEMDIAKQLQAYEVEYHVLQEEL 327 (331)
T ss_dssp TT---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC--
T ss_pred CC---CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 22 1234445555554444444444444444455555443
No 348
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.83 E-value=2.8e+02 Score=24.82 Aligned_cols=267 Identities=9% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHH-------cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 018883 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG-------RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCL 74 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (349)
+.|+|.+++|.++.++.... +..-...+...+..|+ ....-++...-|++..+. .|+...|...+-...
T Consensus 162 ~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~---~~~~DpyK~AvY~Ii 237 (661)
T 2qx5_A 162 LLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKS---SLDGDPYRLAVYKLI 237 (661)
T ss_dssp HHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---------------------------------CHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhC---CCCCCHHHHHHHHHH
Q ss_pred hcCChhHHHHHHHHHHhC-CCCCchHHHHHHHHHHhccC-----------chHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018883 75 KAFAFDKVQALLSDMSTQ-GIRPNTVTYNTLIDAYGRAK-----------MFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
...+.. -... .+..+..-|-.+=-.+++.+ .+++..+.+.+.-+....+ ....+
T Consensus 238 g~cD~~--------~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------lYf~v 303 (661)
T 2qx5_A 238 GRCDLS--------RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------YYLQT 303 (661)
T ss_dssp HTCCGG--------GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------CHHHH
T ss_pred hccccc--------ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------HHHHH
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH---hcCCh
Q 018883 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG---RAGDL 219 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~ 219 (349)
+.-.|+++.|.+++... ...+.+.+...+..+.-.+- -+.+......-....+..||..|. +..+.
T Consensus 304 LlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~ 372 (661)
T 2qx5_A 304 LLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDP 372 (661)
T ss_dssp HHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCH
T ss_pred HHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCH
Q ss_pred HHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCChhhHH-----------HHHHHHhh-----CCCCchHHHHHHHHHH
Q 018883 220 KQMEYLFRLMRSER-IKPSCVTLCSLVRAYGHAGKPEKLG-----------SVLRFIDN-----SDIMLDTVFFNCLVDA 282 (349)
Q Consensus 220 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~-----~~~~~~~~~~~~li~~ 282 (349)
..|.++|-.+-..+ ..-.......+-......++++.-. -++++... ...............-
T Consensus 373 ~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ 452 (661)
T 2qx5_A 373 RVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARR 452 (661)
T ss_dssp HHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHH
Q ss_pred HHccCChHHHHHHHH
Q 018883 283 YGRLKCFAEMKGVLE 297 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~ 297 (349)
+...|++++|..+|.
T Consensus 453 ae~~G~~~dAi~LY~ 467 (661)
T 2qx5_A 453 ADEDGRIYDSILLYQ 467 (661)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH
No 349
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.41 E-value=56 Score=17.77 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCC--hhHHHHHHHHhh
Q 018883 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL--FDKAFSLLEHMK 54 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 54 (349)
+.-.+.++.+.+-|+++. ..-.++.+.|. ++.|++.+.+|.
T Consensus 7 ~vn~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp SCCHHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 334566777777777654 22334455555 888888888774
No 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.37 E-value=1.3e+02 Score=24.05 Aligned_cols=218 Identities=11% Similarity=-0.079 Sum_probs=0.0
Q ss_pred HHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018883 102 NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
...+...+..|+.+.+..+++. ...+......-.+.+...+..|+. ++.+.+.+.|..++...-.+.+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHhcCCCCch--------------------HHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCcHHH
Q 018883 182 GHFEKMSAVMEYMQKYHYSWTI--------------------VTYNIVIDAFGRAG-DLKQMEYLFRLMRSERIKPSCVT 240 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 240 (349)
|+.+-+..+++.....+..++. ...+.|..+..... +.+-+..+++. ...+......
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d~~ 172 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAKDKA 172 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCCTT
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcccCCC
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhh-----CCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHH--H
Q 018883 241 LCSLVRAYGHAGKPEKLGSVLRFIDN-----SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR--T 313 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~ 313 (349)
-.+.+...+..|+.+-+..+++.-.. .+.. +..-.+.|..+..... .++.+.+.+.|..++..... .
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~t 246 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEHTV 246 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTSCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCC
Q ss_pred HHHHHHccCchhhhHHHHHH
Q 018883 314 MVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~ 333 (349)
-+...+..|..+-+..+++.
T Consensus 247 pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 247 PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHc
No 351
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.23 E-value=77 Score=18.13 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=32.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018883 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
.++.++..++...-.+.++..++++.+.|. .+..+|..-++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 456667777777777778888888877773 46666666666665543
No 352
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.94 E-value=43 Score=24.31 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=16.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 018883 69 LIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 69 l~~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.+..|.+.|.+++|.++|++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 345677888888888888876544
No 353
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.90 E-value=48 Score=24.86 Aligned_cols=23 Identities=4% Similarity=-0.104 Sum_probs=13.0
Q ss_pred HHHHccCchhhhHHHHHHHHHhH
Q 018883 316 RAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
......|..+-+..+++.-....
T Consensus 226 ~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 226 KLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhCCCCCC
Confidence 34455677776666665544443
No 354
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=30.25 E-value=89 Score=21.91 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 018883 173 ILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
.++.-|...++.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 44555555566666666665554
No 355
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=29.21 E-value=2.1e+02 Score=22.45 Aligned_cols=42 Identities=0% Similarity=-0.107 Sum_probs=20.9
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018883 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
+.+.+.|+.|...++.-++..+.+.=.++.+.++++.+...|
T Consensus 178 ~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 178 SHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 333344555555555545544444444555555555555444
No 356
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.22 E-value=1.8e+02 Score=21.30 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=12.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCc
Q 018883 215 RAGDLKQMEYLFRLMRSERIKPS 237 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~ 237 (349)
+-.+.+.|+..+.+|++.| .|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~ 47 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLA 47 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHH
T ss_pred hcCCHHHHHHHHHHHHHcC-CHH
Confidence 3455666666666666655 443
No 357
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.60 E-value=2.1e+02 Score=22.37 Aligned_cols=48 Identities=15% Similarity=-0.032 Sum_probs=21.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018883 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (349)
++.|+.+-+ +.+.+.|..++..+ .+...++.|+.+- .+.+++.|-.||
T Consensus 281 ~~~g~~~iv----~~Ll~~GAd~n~~~---~L~~A~~~~~~~i----v~~Ll~~GA~~d 328 (337)
T 4g8k_A 281 VELKLKKIA----ELLCKRGASTDCGD---LVMTARRNYDHSL----VKVLLSHGAKED 328 (337)
T ss_dssp HHTTCHHHH----HHHHTTSCSSTTCC---HHHHHHHTTCHHH----HHHHHHTTCCC-
T ss_pred HHcCCHHHH----HHHHHCCCCCCCCC---HHHHHHHcCCHHH----HHHHHHCcCCCC
Confidence 455555433 33345555555443 2233345565543 333444554444
No 358
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.26 E-value=3.9e+02 Score=25.04 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018883 172 NILLDSYGKAGH---FEKMSAVMEYMQKYH----YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 172 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
..++...|..|+ .+.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345566666666 345666666655431 334432 233333345566555555666665432 23334556
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 018883 245 VRAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+.+++...+.+...++++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 77777777777777777776654
No 359
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.17 E-value=1.2e+02 Score=21.31 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=10.2
Q ss_pred HHHHHhccCchHHHHHHHHHH
Q 018883 104 LIDAYGRAKMFAEMELTLVKM 124 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~ 124 (349)
++.-|...++.++|...++++
T Consensus 16 ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 16 IIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 444444445555555555544
No 360
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.98 E-value=2.3e+02 Score=22.18 Aligned_cols=60 Identities=18% Similarity=0.086 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 018883 31 TALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRP 96 (349)
Q Consensus 31 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (349)
+..+...++.|+++-+..+++.-... . ..+...-.+-+...+..|+.+-+ +.+.+.|..+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadv-n-~~~~~~g~TpLh~A~~~g~~~iv----~~Ll~~ga~~ 85 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANV-N-FQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADP 85 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCT-T-CCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCC-C-ccCCCCCcCHHHHHHHcCCHHHH----HHHHHcCCch
Confidence 34455566888888777777642211 0 11111111234445566776544 3444555444
No 361
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.91 E-value=1.7e+02 Score=20.69 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=78.5
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018883 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
++...-...+..+...+..+....+. .+.. .++...-...+.++...++.+....+.. +.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHH
Confidence 44445555555666655533333333 3332 3455555566666666666543333333 332 24566666666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018883 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.++.+.++.+....+ ..+.. .++..+-...+.++...++.+.... +..+... ++..+-...+.++.+.|..
T Consensus 98 ~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~-L~~~l~d---~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 98 VALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDERAVEP-LIKALKD---EDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTCGGGHHH-HHHHTTC---SSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHcC---CCHHHHHHHHHHHHHhCch-
Confidence 677776664433333 33332 3455555666666766666543333 3333321 3555555666666666653
Q ss_pred HHHHHHHHHHh
Q 018883 291 EMKGVLEVMQQ 301 (349)
Q Consensus 291 ~a~~~~~~~~~ 301 (349)
++...+..+.+
T Consensus 169 ~~~~~L~~~l~ 179 (201)
T 3ltj_A 169 RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34555555543
No 362
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=25.89 E-value=2.5e+02 Score=22.38 Aligned_cols=77 Identities=6% Similarity=0.056 Sum_probs=53.9
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-HHHH--HHHHHH----HHhcCCHHHHHHHH
Q 018883 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS-INTF--NILLDS----YGKAGHFEKMSAVM 191 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~l~~~----~~~~~~~~~a~~~~ 191 (349)
+++..+.+.++.|...++.-++..+.+.=.++.+.++|+.+...|.... ...+ .+++.. .....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3555666678888888888888888888889999999999998875433 2222 233322 23457888888777
Q ss_pred HHHH
Q 018883 192 EYMQ 195 (349)
Q Consensus 192 ~~~~ 195 (349)
..+.
T Consensus 310 ~~~p 313 (345)
T 2qfz_A 310 QNLP 313 (345)
T ss_dssp TSCS
T ss_pred HcCC
Confidence 6543
No 363
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.86 E-value=60 Score=21.40 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=29.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018883 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
|.-.|...+.+++.+-|+++++-..+.| +...|.+.+-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 4445555566666666666666666655 45555555555555544444443
No 364
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.84 E-value=1.9e+02 Score=20.91 Aligned_cols=20 Identities=10% Similarity=-0.069 Sum_probs=10.3
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 018883 214 GRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~ 233 (349)
+..|+.+.+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 44555555555555555444
No 365
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=25.79 E-value=1.1e+02 Score=18.24 Aligned_cols=33 Identities=6% Similarity=0.052 Sum_probs=23.9
Q ss_pred CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhh
Q 018883 22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMK 54 (349)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (349)
+++|++.+|+-+..++-+..-..++..+..++.
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468899999998887766665666666665543
No 366
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.67 E-value=2e+02 Score=21.00 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=21.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 018883 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA 251 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (349)
+-.+.+.|+..+.+|++.|-.|....-..++.+.-.-
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDI 55 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDV 55 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 4566777777777777776555444434444444333
No 367
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.62 E-value=1.8e+02 Score=20.53 Aligned_cols=29 Identities=3% Similarity=-0.072 Sum_probs=14.2
Q ss_pred HHHHHhccCchHHHHHHHHHHhccCCCcc
Q 018883 104 LIDAYGRAKMFAEMELTLVKMLSEDCEPD 132 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 132 (349)
.+...+..|+.+.-.++.+-+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33344455555444445555555554443
No 368
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.62 E-value=1.5e+02 Score=19.37 Aligned_cols=41 Identities=5% Similarity=-0.082 Sum_probs=18.1
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHh
Q 018883 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
+|+.+....+.|+...--.-+..+...++++.|.++...+.
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444443333222222233344556666666655554
No 369
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.03 E-value=2.3e+02 Score=20.88 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=17.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018883 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (349)
+-.+.+.|+..+.+|++.|-.|....-..++.+.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455666666666666665444433333333333
No 370
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.02 E-value=2.9e+02 Score=23.31 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018883 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
..+.+...|.+.++...+..+++.+...+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~ 207 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSM 207 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCC
Confidence 456667777778888888887777766554
No 371
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.40 E-value=78 Score=23.17 Aligned_cols=21 Identities=0% Similarity=-0.087 Sum_probs=12.9
Q ss_pred HHHHhcCChhhHHHHHHHHhh
Q 018883 246 RAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~ 266 (349)
......|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334456666677777766654
No 372
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.27 E-value=1.5e+02 Score=18.59 Aligned_cols=34 Identities=6% Similarity=-0.011 Sum_probs=24.6
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018883 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
-.+..+.+++...|+.|+..+...++..|...+-
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 3567777777778888887777777777666553
No 373
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.20 E-value=5.9e+02 Score=25.29 Aligned_cols=75 Identities=8% Similarity=0.016 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHH
Q 018883 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
+...+.|.++.+---.-|.......+..-.+++++..|++++.++.+. +|....|..++..+...| |+.-..+.+
T Consensus 1266 ~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~ 1340 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 344555555554321123333333344445789999999999999887 478888988888887766 444444443
No 374
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=21.75 E-value=5.4e+02 Score=24.69 Aligned_cols=145 Identities=11% Similarity=0.115 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc
Q 018883 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145 (349)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (349)
+..+++ ..+.-+.+...+++.++... ......+++++...|......-+.+.+....+.+.. ....+..+...
T Consensus 313 f~~Lv~-~lR~~~~e~L~~l~~~~~~~-----~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~ 385 (1056)
T 1lsh_A 313 FLRLTA-FLRNVDAGVLQSIWHKLHQQ-----KDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSN 385 (1056)
T ss_dssp HHHHHH-HHTTSCHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHT
T ss_pred HHHHHH-HHhcCCHHHHHHHHHHHhcc-----HHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhcc
Confidence 444443 34555667777777776532 223344777777777765544444444433333222 21222222221
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018883 146 SGQIDTMEKCYEKFQSAG-IQPS-------INTFNILLDSYGKAGH------FEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
..--.+.++.+..+.+.. +..+ ..++..|+.-+|.... .....+.+.+....+ +..--...+.
T Consensus 386 ~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~---~~~~~~~~Lk 462 (1056)
T 1lsh_A 386 QQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA---KEEEIVLALK 462 (1056)
T ss_dssp CCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC---ChHHHHHHHH
Confidence 222233444444444321 1112 2345667776665431 222222333223322 3444455666
Q ss_pred HHHhcCChH
Q 018883 212 AFGRAGDLK 220 (349)
Q Consensus 212 ~~~~~~~~~ 220 (349)
++.+.|...
T Consensus 463 aLGN~g~p~ 471 (1056)
T 1lsh_A 463 ALGNAGQPN 471 (1056)
T ss_dssp HHHHHTCGG
T ss_pred HhhccCChh
Confidence 777777654
No 375
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.65 E-value=1.2e+02 Score=22.56 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=16.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 018883 70 IKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
+...+..|+.+.+..+++.+.+.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 4445566777766666666666554433
No 376
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.61 E-value=1.4e+02 Score=21.15 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCch
Q 018883 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 324 (349)
|....++.++..++...-.+.++..+.++...|. .+..+|..-++.+++...+
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777788888888877774 4677776666666654433
No 377
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.54 E-value=2.3e+02 Score=20.37 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=10.5
Q ss_pred HHHHHcCCChhHHHHHHHH
Q 018883 34 LSAYGRSGLFDKAFSLLEH 52 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~ 52 (349)
+...+..|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455666666666554
No 378
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.29 E-value=2.2e+02 Score=24.64 Aligned_cols=36 Identities=3% Similarity=0.017 Sum_probs=26.4
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 018883 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS 167 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (349)
+......+-+.|.+.+++-.|-+++..+-..+..++
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~i~ 251 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNFDIT 251 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSCCC
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCCCC
Confidence 344566677888899999999999988887755444
No 379
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=21.10 E-value=88 Score=21.41 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=13.0
Q ss_pred HHHHccCchhhhHHHHHHHHHhHHhhh
Q 018883 316 RAYSTNGMKNHAKEFQDLVEKMDETCL 342 (349)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (349)
......|..+-+..+++...+......
T Consensus 140 ~~A~~~~~~~~~~~L~~~~~~~~~~~~ 166 (172)
T 3v30_A 140 DLAVALGYRKVQQVIENHILKLFQSNL 166 (172)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhcccC
Confidence 334445666655555555555444333
Done!