Query 018884
Match_columns 349
No_of_seqs 216 out of 1661
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:33:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 60.2 4.6 0.00016 27.0 1.9 26 166-191 15-40 (51)
2 2ayj_A 50S ribosomal protein L 58.3 4.8 0.00016 27.3 1.8 27 165-191 19-45 (56)
3 1z2q_A LM5-1; membrane protein 54.4 7.2 0.00025 28.6 2.5 24 166-189 22-47 (84)
4 1wfk_A Zinc finger, FYVE domai 54.2 6 0.0002 29.4 2.0 24 166-189 10-35 (88)
5 1vfy_A Phosphatidylinositol-3- 43.9 7.9 0.00027 27.6 1.2 23 167-189 13-37 (73)
6 1x4u_A Zinc finger, FYVE domai 43.9 8.7 0.0003 28.1 1.4 24 166-189 15-40 (84)
7 1joc_A EEA1, early endosomal a 40.3 10 0.00035 30.1 1.4 24 166-189 70-95 (125)
8 1dvp_A HRS, hepatocyte growth 39.9 9.9 0.00034 33.1 1.4 24 166-189 162-187 (220)
9 2yw8_A RUN and FYVE domain-con 38.5 11 0.00036 27.5 1.2 24 166-189 20-45 (82)
10 1y02_A CARP2, FYVE-ring finger 33.9 11 0.00039 29.7 0.7 24 166-189 20-45 (120)
11 3zyq_A Hepatocyte growth facto 32.1 14 0.00049 32.2 1.2 24 166-189 165-190 (226)
12 3t7l_A Zinc finger FYVE domain 29.8 20 0.00067 26.6 1.4 24 166-189 21-46 (90)
13 3arc_T Photosystem II reaction 27.6 1E+02 0.0034 18.3 4.0 26 73-98 5-31 (32)
14 2cr8_A MDM4 protein; ZF-ranbp 24.2 32 0.0011 22.8 1.4 22 166-187 12-33 (53)
15 3u5e_m 60S ribosomal protein L 23.2 35 0.0012 26.7 1.8 24 165-188 93-118 (128)
16 2c6a_A Ubiquitin-protein ligas 23.1 34 0.0012 22.1 1.4 21 166-186 14-34 (46)
17 2dkt_A Ring finger and CHY zin 22.5 43 0.0015 27.2 2.2 47 158-204 76-126 (143)
18 2k1p_A Zinc finger RAN-binding 20.0 79 0.0027 18.6 2.5 21 166-186 7-27 (33)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.18 E-value=4.6 Score=26.98 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=22.9
Q ss_pred eecccCccccCCCCcccccccccccc
Q 018884 166 LTCSYCNVEQPPRAKHCHDCDRCVLQ 191 (349)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~~CV~r 191 (349)
+.|..|...-|.++..|+.||.--+|
T Consensus 15 ~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 15 YVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp EECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred ccCCCCCCcCCCCceecCCCCCcccc
Confidence 78999999999999999999876444
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=58.32 E-value=4.8 Score=27.34 Aligned_cols=27 Identities=30% Similarity=0.694 Sum_probs=23.0
Q ss_pred ceecccCccccCCCCcccccccccccc
Q 018884 165 SLTCSYCNVEQPPRAKHCHDCDRCVLQ 191 (349)
Q Consensus 165 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r 191 (349)
...|.+|...-|+|+.-|+.||.--+|
T Consensus 19 k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 19 KKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hhhhccccCcCCcccccccCCCCCCCC
Confidence 378999999999999999998865443
No 3
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=54.43 E-value=7.2 Score=28.59 Aligned_cols=24 Identities=25% Similarity=0.717 Sum_probs=17.8
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018884 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|+.. --.|-|||+.||+-+
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCcCcCCccccchhcccccCCCcEE
Confidence 468888764 346889999998744
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=54.22 E-value=6 Score=29.43 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=18.0
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018884 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|+.. --.|-|||+.||+-+
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCcCcCCcccCccccccCCCCCCEE
Confidence 568888764 346889999998743
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=43.92 E-value=7.9 Score=27.56 Aligned_cols=23 Identities=26% Similarity=0.743 Sum_probs=17.0
Q ss_pred ecccCccc--cCCCCcccccccccc
Q 018884 167 TCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 167 ~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
.|..|+.. --.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888754 346889999998744
No 6
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.89 E-value=8.7 Score=28.10 Aligned_cols=24 Identities=17% Similarity=0.602 Sum_probs=17.5
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018884 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|+.. --.|-|||+.||+-+
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEE
Confidence 458888764 457889999998743
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.28 E-value=10 Score=30.09 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=17.9
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018884 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|... -..|-|||+.||+-+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE
Confidence 458888764 346889999999744
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.88 E-value=9.9 Score=33.05 Aligned_cols=24 Identities=33% Similarity=0.848 Sum_probs=18.1
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018884 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|+.. --.|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 568888753 346899999999744
No 9
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=38.50 E-value=11 Score=27.52 Aligned_cols=24 Identities=29% Similarity=0.782 Sum_probs=17.4
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018884 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|+.. --.|-|||+.||+-+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEE
Confidence 458888753 346889999998744
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=33.85 E-value=11 Score=29.71 Aligned_cols=24 Identities=25% Similarity=0.767 Sum_probs=17.5
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018884 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|... -..|-|||+.||+.+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CcccCcCCccccccccccCCCCCCee
Confidence 358888763 346899999998843
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.06 E-value=14 Score=32.24 Aligned_cols=24 Identities=29% Similarity=0.757 Sum_probs=17.3
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018884 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|... --.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 468888742 235889999998854
No 12
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.76 E-value=20 Score=26.58 Aligned_cols=24 Identities=29% Similarity=0.798 Sum_probs=17.2
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018884 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|... --.|-|||+.||+-+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEE
Confidence 458888753 335889999998744
No 13
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=27.60 E-value=1e+02 Score=18.31 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=14.9
Q ss_pred HHHHHHHHH-HHHHHHHhccCCCccCc
Q 018884 73 FYLLLFVAT-LVQYFITSGSSPGYVLD 98 (349)
Q Consensus 73 i~~~l~~l~-l~~y~~~~~~dPG~vp~ 98 (349)
+|.++.+++ ...++...+.||-.+++
T Consensus 5 vYt~ll~~tlgiiFFAI~FRePPri~~ 31 (32)
T 3arc_T 5 TYVFIFACIIALFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCC-
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCC
Confidence 344444333 34577788999966653
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.22 E-value=32 Score=22.76 Aligned_cols=22 Identities=23% Similarity=0.632 Sum_probs=17.3
Q ss_pred eecccCccccCCCCcccccccc
Q 018884 166 LTCSYCNVEQPPRAKHCHDCDR 187 (349)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~~ 187 (349)
+-|.+|+..-||--.||..|-.
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecccccccCCCccchhHHHHH
Confidence 6699999888888888876643
No 15
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=23.20 E-value=35 Score=26.71 Aligned_cols=24 Identities=33% Similarity=0.890 Sum_probs=21.0
Q ss_pred ceecccCccccCCCCcccc--ccccc
Q 018884 165 SLTCSYCNVEQPPRAKHCH--DCDRC 188 (349)
Q Consensus 165 ~~~C~~C~~~kP~Rs~HC~--~C~~C 188 (349)
...|.+|...-|+|+..|+ .||..
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 4789999999999999999 48764
No 16
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=23.12 E-value=34 Score=22.11 Aligned_cols=21 Identities=38% Similarity=0.963 Sum_probs=17.5
Q ss_pred eecccCccccCCCCccccccc
Q 018884 166 LTCSYCNVEQPPRAKHCHDCD 186 (349)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~ 186 (349)
..|.+|+..-||--.||..|-
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTC
T ss_pred EecccccccCCCccchhhHHH
Confidence 679999999888888887764
No 17
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=22.48 E-value=43 Score=27.18 Aligned_cols=47 Identities=26% Similarity=0.546 Sum_probs=31.3
Q ss_pred CCCCcccceecccCccccCC-CCcccccccccccc--c-cccccccccccc
Q 018884 158 PPGTSIRSLTCSYCNVEQPP-RAKHCHDCDRCVLQ--F-DHHCVWLGTCVG 204 (349)
Q Consensus 158 ~~g~~~~~~~C~~C~~~kP~-Rs~HC~~C~~CV~r--~-DHHC~Wv~nCIG 204 (349)
..|......||..|+.+.+. ...||..||-|-.. - =-||.=-|.|+.
T Consensus 76 ~Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 76 DCSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SSCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 35556666899999988543 45778877777765 2 256666666654
No 18
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.04 E-value=79 Score=18.61 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=12.2
Q ss_pred eecccCccccCCCCccccccc
Q 018884 166 LTCSYCNVEQPPRAKHCHDCD 186 (349)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~ 186 (349)
+.|..|...-=.|-..|..|+
T Consensus 7 W~C~~C~~~Nfa~R~~C~~C~ 27 (33)
T 2k1p_A 7 WQCKTCSNVNWARRSECNMCN 27 (33)
T ss_dssp CBCSSSCCBCCTTCSBCSSSC
T ss_pred cccCCCCCccccccccccccC
Confidence 556666666555555555554
Done!