Query 018885
Match_columns 349
No_of_seqs 165 out of 257
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2864 Nuclear division RFT1 100.0 2.2E-80 4.7E-85 613.0 31.2 330 3-341 172-516 (530)
2 PF04506 Rft-1: Rft protein; 100.0 2.4E-78 5.1E-83 625.2 35.1 330 11-346 202-544 (549)
3 PRK10459 colanic acid exporter 99.7 1.3E-14 2.9E-19 146.9 29.6 236 13-267 168-404 (492)
4 TIGR01695 mviN integral membra 99.5 1.3E-10 2.9E-15 117.5 30.6 204 59-271 222-431 (502)
5 COG2244 RfbX Membrane protein 99.4 5.4E-10 1.2E-14 112.7 29.3 202 58-268 211-414 (480)
6 TIGR02900 spore_V_B stage V sp 99.3 7.8E-10 1.7E-14 111.3 24.5 201 59-270 224-436 (488)
7 PRK15099 O-antigen translocase 99.2 5E-09 1.1E-13 104.4 24.3 202 59-271 214-415 (416)
8 PF03023 MVIN: MviN-like prote 99.0 2.2E-07 4.7E-12 94.8 27.9 205 60-271 198-406 (451)
9 PRK01766 multidrug efflux prot 98.6 7E-06 1.5E-10 82.8 19.8 201 59-267 11-217 (456)
10 TIGR00797 matE putative efflux 98.5 1.4E-05 3.1E-10 76.6 19.5 190 70-267 3-196 (342)
11 PRK10367 DNA-damage-inducible 98.4 5.5E-05 1.2E-09 76.9 21.3 202 59-267 8-211 (441)
12 PRK01766 multidrug efflux prot 98.4 5E-05 1.1E-09 76.7 20.3 199 59-269 238-443 (456)
13 PRK09575 vmrA multidrug efflux 98.3 8.4E-05 1.8E-09 75.5 20.7 202 58-266 10-213 (453)
14 TIGR02900 spore_V_B stage V sp 98.3 0.00017 3.6E-09 72.8 22.3 194 66-266 5-202 (488)
15 PRK09575 vmrA multidrug efflux 98.2 0.00065 1.4E-08 69.0 23.9 204 60-270 234-438 (453)
16 PRK00187 multidrug efflux prot 98.1 0.00089 1.9E-08 68.4 24.0 196 59-262 235-438 (464)
17 TIGR01695 mviN integral membra 98.1 0.00042 9.1E-09 70.2 21.4 198 62-267 2-206 (502)
18 PRK10189 MATE family multidrug 98.0 0.00077 1.7E-08 69.3 21.4 198 58-265 27-234 (478)
19 PRK00187 multidrug efflux prot 98.0 0.00071 1.5E-08 69.1 20.1 194 59-265 9-212 (464)
20 COG0534 NorM Na+-driven multid 97.8 0.0026 5.7E-08 65.2 20.7 203 58-268 15-221 (455)
21 PRK15099 O-antigen translocase 97.8 0.0039 8.5E-08 62.2 20.2 193 63-267 4-196 (416)
22 PF13440 Polysacc_synt_3: Poly 97.6 0.0075 1.6E-07 54.7 18.3 167 85-270 9-175 (251)
23 PF01943 Polysacc_synt: Polysa 97.6 0.037 7.9E-07 50.4 22.4 186 67-270 6-193 (273)
24 PF14667 Polysacc_synt_C: Poly 97.6 0.0062 1.3E-07 51.5 15.7 83 186-271 1-83 (146)
25 PF01943 Polysacc_synt: Polysa 97.5 0.00085 1.8E-08 61.2 10.0 71 57-128 202-272 (273)
26 COG0728 MviN Uncharacterized m 97.4 0.27 5.8E-06 51.7 32.2 205 60-271 232-440 (518)
27 COG0534 NorM Na+-driven multid 97.3 0.051 1.1E-06 55.7 22.0 205 59-271 240-446 (455)
28 PF01554 MatE: MatE; InterPro 97.2 0.00023 4.9E-09 61.0 2.6 155 70-229 3-158 (162)
29 TIGR00797 matE putative efflux 97.2 0.02 4.3E-07 54.8 16.1 110 59-173 215-324 (342)
30 PRK10189 MATE family multidrug 97.1 0.18 3.9E-06 51.9 23.9 187 60-261 259-455 (478)
31 PRK10459 colanic acid exporter 97.1 0.053 1.2E-06 55.1 19.6 184 60-263 5-189 (492)
32 PF03023 MVIN: MviN-like prote 97.0 0.09 2E-06 53.8 20.4 172 90-269 5-183 (451)
33 PF13440 Polysacc_synt_3: Poly 96.8 0.0067 1.5E-07 55.0 9.1 68 61-128 184-251 (251)
34 PRK10367 DNA-damage-inducible 96.7 0.43 9.2E-06 48.6 22.3 199 60-271 232-434 (441)
35 COG2244 RfbX Membrane protein 94.8 2.7 5.8E-05 42.5 18.2 186 61-262 7-194 (480)
36 COG0728 MviN Uncharacterized m 80.0 87 0.0019 33.3 20.6 203 60-268 7-216 (518)
37 KOG1347 Uncharacterized membra 63.1 1.3E+02 0.0029 31.3 12.8 178 60-253 28-215 (473)
38 COG3628 Phage baseplate assemb 57.6 5 0.00011 34.0 1.0 23 102-124 40-62 (116)
39 COG1347 NqrD Na+-transporting 39.4 2E+02 0.0044 26.3 8.2 42 168-211 6-47 (208)
40 KOG2563 Permease of the major 25.8 2.5E+02 0.0054 29.6 7.4 84 198-285 66-164 (480)
41 PF13858 DUF4199: Protein of u 25.7 3.7E+02 0.008 23.0 7.7 84 219-302 2-88 (163)
42 PRK09781 hypothetical protein; 20.2 45 0.00097 29.5 0.7 31 55-93 28-58 (181)
No 1
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.2e-80 Score=612.99 Aligned_cols=330 Identities=40% Similarity=0.621 Sum_probs=287.9
Q ss_pred EEEEeecCCchhHHHhHHHHHHHHHHHHHHHHHHHh-hc-------ccccccccccccCC--cccccHHHHHHHHHHHHH
Q 018885 3 ILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLL-FG-------AFKTSDLFPFRLGN--MMSYDKQLANMCTLFTFQ 72 (349)
Q Consensus 3 ~~~~~~~~~~~~l~Fa~gQl~ys~~l~~~Y~~~f~~-~~-------~~~~~~l~p~~~~~--~~~~~~~ll~l~~~~~~Q 72 (349)
..+|++++++++++||+||++|++++++||++++.. .+ ..+.++++|+...+ ..+||+|+++++++++.|
T Consensus 172 a~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Q 251 (530)
T KOG2864|consen 172 AGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQ 251 (530)
T ss_pred HHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHH
Confidence 345788999999999999999999999877655543 33 23457899988765 678999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhcc--CCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHHH
Q 018885 73 SFRKLLLQEGEKLVLVWLD--TPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKL 150 (349)
Q Consensus 73 si~K~lLTEGdk~vl~~~~--t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk~ 150 (349)
+++||+||||||+||++.. +.+|||+||++||||||+||++|+||||++|.+|+|+++++++||.|++.++|.++||+
T Consensus 252 s~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLkl 331 (530)
T KOG2864|consen 252 SFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKL 331 (530)
T ss_pred HHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999665 78899999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 018885 151 VLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIY 230 (349)
Q Consensus 151 ~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~f 230 (349)
+.++|++++.|||+||+.++++++|+||+++++|.+||+||.|||+||+|||+|||.+|+|+.+|+++||+.|+++|++|
T Consensus 332 v~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSvif 411 (530)
T KOG2864|consen 332 VIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIF 411 (530)
T ss_pred HHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCChhhH---HHHHHHHHHhhhHhhhccch
Q 018885 231 IVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPI---LLVSGVITLFSERIFLDRQD 307 (349)
Q Consensus 231 l~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~~~~~~~~~~~p~~~~~---~~~s~~~~~~s~~~~~~~~~ 307 (349)
++.+|++++++|++|+|+|||+||.+||.||++||+||+++... +....+|...+. +..++. ++....
T Consensus 412 lilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~l-d~~~~l~~~~~~~~~~~~~s~--------l~~~~~ 482 (530)
T KOG2864|consen 412 LILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDLSL-DRSLFLPFGPTLSIIFAGSSL--------LCCTTW 482 (530)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-ChhhccCcchhHHHHHHhcch--------hhcccc
Confidence 99999999999999999999999999999999999999998422 122233332221 222221 121222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018885 308 FWATFLIHFSVGLTCFCISSIVIYHRERSFIYKI 341 (349)
Q Consensus 308 ~~~~~~~hi~~g~~~~~~~~~~i~~~er~~i~~~ 341 (349)
+......|+++|++|++.++..+++.|+++++.+
T Consensus 483 ~~s~l~~hi~igvvc~la~l~~~al~~~~~~~~~ 516 (530)
T KOG2864|consen 483 WLSYLAAHIAIGVVCLLATLGSTALILVVFIVIL 516 (530)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456999999999999999999999999844
No 2
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=100.00 E-value=2.4e-78 Score=625.24 Aligned_cols=330 Identities=41% Similarity=0.641 Sum_probs=278.7
Q ss_pred CchhHHHhHHHHHHHHHHHHHHHHHHHhhcccccccccccccC---CcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 018885 11 MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLG---NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVL 87 (349)
Q Consensus 11 ~~~~l~Fa~gQl~ys~~l~~~Y~~~f~~~~~~~~~~l~p~~~~---~~~~~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl 87 (349)
..++++||+||++|+++++.+|..... .+.++.++++|+... +..++|+++++++++|+.||++||+||||||++|
T Consensus 202 ~~~~l~Falgq~~ys~~l~~~y~~~~~-~~~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl 280 (549)
T PF04506_consen 202 GLAILAFALGQLAYSITLFFCYYWMYF-FPFKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVL 280 (549)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhcc-CcccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEE
Confidence 345889999999999999999865433 222334567776544 4677999999999999999999999999999999
Q ss_pred hh--ccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh------hhHHHHHHHHHHHHHHHHHHHH
Q 018885 88 VW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS------KKIGNSLAEALKLVLLIGLVFM 159 (349)
Q Consensus 88 ~~--~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~------~~~~~~l~~~Lk~~~~igli~~ 159 (349)
+. ++|++|||+||+|||||||+||++||||||++|.+|||+++++++++. +++.++|+.++|++.++|++++
T Consensus 281 ~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~ 360 (549)
T PF04506_consen 281 SFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIV 360 (549)
T ss_pred EeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999987654332 4577899999999999999999
Q ss_pred hhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885 160 AFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ 239 (349)
Q Consensus 160 ~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~ 239 (349)
+|||+||+.+|++++|+||++++++++||+||+|||+||+|||+|||++|+|+++|++++|+||+++|++|++++|++++
T Consensus 361 ~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~ 440 (549)
T PF04506_consen 361 AFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTR 440 (549)
T ss_pred HhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccccccCCChhhHHHHHHHHHHhhhHhhhccchhhHHHHHHHH
Q 018885 240 S-AGSVGLILANSLNMILRIIYSAIFIKHYFQGSS-SFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFS 317 (349)
Q Consensus 240 ~-~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~~~-~~~~~~~~p~~~~~~~~s~~~~~~s~~~~~~~~~~~~~~~~hi~ 317 (349)
+ +|++|+|+|||+||++||+||++||+|||++.. +.+....+++...++..+...+.. +++..++++++.....|+.
T Consensus 441 ~~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 519 (549)
T PF04506_consen 441 WGLGAVGLILANCINMSLRIIYSLRFIRRYFRNSGPSFSLFLPLRPSKIVLIAAISSAIV-TYWFFGCTSFLSQFLIHIA 519 (549)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccchhccHHHHHHHHHHHHHH-hheeccccchHHHHHHHHH
Confidence 5 999999999999999999999999999999853 333322222222223333333333 3333444556677789999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 018885 318 VGLTCFCISSIVIYHRERSFIYKIIRFRN 346 (349)
Q Consensus 318 ~g~~~~~~~~~~i~~~er~~i~~~~~~~~ 346 (349)
+|++|+++ +..+||+.++.+++.++
T Consensus 520 ~g~~~l~~----i~~~er~~~~~~~~~~~ 544 (549)
T PF04506_consen 520 VGVVCLLL----ILLEERQLLKLFIKKVK 544 (549)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 99988664 45589999999877664
No 3
>PRK10459 colanic acid exporter; Provisional
Probab=99.71 E-value=1.3e-14 Score=146.94 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=177.9
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q 018885 13 KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDT 92 (349)
Q Consensus 13 ~~l~Fa~gQl~ys~~l~~~Y~~~f~~~~~~~~~~l~p~~~~~~~~~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t 92 (349)
+..++.+|+++.++...+.++.... ++ .-|+..-+ ...-|+++++..+.+..++.-++.++.|+++++.+.+
T Consensus 168 g~~~l~~~~~~~~~~~~l~~~~~~~--~~-----~~~~~~~~-~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg 239 (492)
T PRK10459 168 GALAAILGYLVNSSVRTLLFGYFGR--KI-----YRPALHFS-LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILG 239 (492)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc--cc-----CCccceec-HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhc
Confidence 3566777777766544333322111 11 11221111 1123789999999999999999999999999999999
Q ss_pred CccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHH
Q 018885 93 PYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGP-SYSYSLVR 171 (349)
Q Consensus 93 ~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk~~~~igli~~~fG~-~~s~~lL~ 171 (349)
+++.|.|+.+.++.+++...+..++....+|.+|+..+ |+ ++.++.+...++....+++-+ .+|. ..++++++
T Consensus 240 ~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~--~~---~~~~~~~~~~~~~~~~~~~p~-~~~l~~~a~~ii~ 313 (492)
T PRK10459 240 AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQD--DT---EKLRVGFLKLLSVLGIINFPL-LLGLMVVSNNFVP 313 (492)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcC--CH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH
Confidence 99999999999999999999888899999999999632 21 235566555666666555432 3344 88999999
Q ss_pred HHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Q 018885 172 LLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANS 251 (349)
Q Consensus 172 ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~ 251 (349)
+++|++|.++ .+++++.+.+..+.+++++......+.++++...+.+....+..++ ..+.+.+.+|..|..+|..
T Consensus 314 ll~g~~~~~a--~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~---~~~~~~~~~G~~g~a~a~~ 388 (492)
T PRK10459 314 LVFGEKWNSA--IPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIP---AIVIGGQLAGLIGVALGFL 388 (492)
T ss_pred HhcChhHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHH---HHHHHHhhccHHHHHHHHH
Confidence 9999999776 7899999999999999999999999999999877666544444443 3334667789999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018885 252 LNMILRIIYSAIFIKH 267 (349)
Q Consensus 252 ~nM~lRi~~s~~fI~~ 267 (349)
+...+....+.++..|
T Consensus 389 i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 389 LVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988888888888744
No 4
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.46 E-value=1.3e-10 Score=117.47 Aligned_cols=204 Identities=15% Similarity=0.118 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 138 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~ 138 (349)
-|+++++..+...+++.-++.+.-|+.+ +...+.++.|.|+.++++-.++.-.+..++..+..|..||...++|.++
T Consensus 222 ~k~~l~~~~p~~~~~~~~~~~~~id~~~-~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~-- 298 (502)
T TIGR01695 222 LKRFLKLFLPTTLGSSASQITLLINTAL-ASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE-- 298 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--
Confidence 3789999999999999999999999977 6677788999999999998888878889999999999999987665444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCC------CCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCC
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK------WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVAT 212 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~k------W~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~ 212 (349)
.++.....++....+++.........+++++++++|++ |.. +.+.++++|+..++.+++.+.....++.++
T Consensus 299 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~ 375 (502)
T TIGR01695 299 -LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVM--TATILAAYGLGLIFYSLQKVLLRAFYARKD 375 (502)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHhccC
Confidence 66666667777777776655555588999999999863 433 377999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885 213 EDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG 271 (349)
Q Consensus 213 ~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~ 271 (349)
++.....+.... ++.+..++++...+|..|..+|..+...+.......+.+|..+.
T Consensus 376 ~~~~~~~~~~~~---~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 431 (502)
T TIGR01695 376 TRTPFINSVISV---VLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLKG 431 (502)
T ss_pred CccCHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 888777775544 34445566677889999999999999999999888888887654
No 5
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.39 E-value=5.4e-10 Score=112.71 Aligned_cols=202 Identities=17% Similarity=0.255 Sum_probs=163.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885 58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 137 (349)
Q Consensus 58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~ 137 (349)
.-+++++.+..+...++...+.++.|+++++.+.++++-|.|+ +.+.-+-+...+..|+....+|..|+..++++.+
T Consensus 211 ~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~-~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~-- 287 (480)
T COG2244 211 LLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYS-AAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK-- 287 (480)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH--
Confidence 3478999999999999999999999999999999999999999 8888888888999999999999999999876533
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018885 138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 217 (349)
Q Consensus 138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~ 217 (349)
+.++.....+|....++..++..--..+++++.+++|++|.+. .++++.+|...++..++++.....++...++...
T Consensus 288 -~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~--~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 288 -ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASA--APILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 3445555566766666654444444888899999999999985 7899999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 018885 218 RSNDSLLVFSVIYIVMNVILIQSAGSVGLILAN--SLNMILRIIYSAIFIKHY 268 (349)
Q Consensus 218 ~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN--~~nM~lRi~~s~~fI~~~ 268 (349)
+.+..-. +..++.+++++..+|..|...|- .+.+.+-..|......+.
T Consensus 365 ~~~~~~~---i~~~~l~~~li~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 414 (480)
T COG2244 365 LISLISA---LLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVR 414 (480)
T ss_pred HHHHHHH---HHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776554 45556666688888888888887 344444444444444433
No 6
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.30 E-value=7.8e-10 Score=111.31 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=160.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC---------ccchhH-HHhhhhhhHHHHHHhhhhhhhhHHHHHhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP---------YNQAVY-GLVDKLGSLVVRMVFLPFEESSYATFARS 128 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~---------~~QGvY-~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~ 128 (349)
-|++++++.+.+.+++..++.+..|++++++..+. ++.|.| +++.++.+++. .+..++..+..|.+++.
T Consensus 224 ~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~s~~ 302 (488)
T TIGR02900 224 LFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDISEA 302 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999876532 233444 35566677774 78889999999999999
Q ss_pred hcCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018885 129 ASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLH 208 (349)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~ 208 (349)
.+++|.++ .++.....++....+++.........+++++++++| |.+ +.+.+++.+...++.+++.+.....+
T Consensus 303 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~--~~~~l~i~~~~~~~~~~~~~~~~~l~ 375 (488)
T TIGR02900 303 MAKKNYSS---IEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RPD--AGNFIRVLAPSFPFLYFSAPLQSILQ 375 (488)
T ss_pred HHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87665444 556666677777777765555555788899998884 443 47899999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018885 209 AVATEDQLKRSNDSLLVFSVIYIVMNVILI--QSAGSVGLILANSLNMILRIIYSAIFIKHYFQ 270 (349)
Q Consensus 209 a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~--~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~ 270 (349)
+.++++...+.+....++.++ .+++++ +.+|..|..+|..+.+.++.+.+..+.+|.++
T Consensus 376 ~~g~~~~~~~~~~~~~i~~i~---l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~ 436 (488)
T TIGR02900 376 GLGKQKVALRNSLIGAIVKII---LLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIR 436 (488)
T ss_pred hcCcchHHHHHHHHHHHHHHH---HHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999888777666555544 455566 67899999999999999999999999988764
No 7
>PRK15099 O-antigen translocase; Provisional
Probab=99.21 E-value=5e-09 Score=104.35 Aligned_cols=202 Identities=13% Similarity=0.020 Sum_probs=153.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 138 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~ 138 (349)
-|+++++..+...+++.-.+.+-.|+.+++...+.++.|.|++++++.+.+...+..|+.++.+|..++. +++++
T Consensus 214 ~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~-- 288 (416)
T PRK15099 214 AGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRD-- 288 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHH--
Confidence 3789999999999999999999999999998888899999999999999999999999999999999995 22222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 218 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~ 218 (349)
.++.....++....+++.....-...++.++++++|++|.+. .+++++.+....+...+........+.+.++....
T Consensus 289 -~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~--~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 289 -ITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAM--RDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544433333788999999999999886 77899988888877777766544443332211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885 219 SNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG 271 (349)
Q Consensus 219 ~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~ 271 (349)
. -...-+..+..++++++.+|..|..+|-.+.-.+..+.+.....+++++
T Consensus 366 ~---~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~~~~~~ 415 (416)
T PRK15099 366 A---EVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFLLYRRR 415 (416)
T ss_pred H---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1122234556677889999999999999999999999999888877765
No 8
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.04 E-value=2.2e-07 Score=94.79 Aligned_cols=205 Identities=19% Similarity=0.250 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885 60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 139 (349)
Q Consensus 60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~ 139 (349)
|++.+.......-+...|+.+-=|+.+-+.+. ...-..+.-++.+-.++--.+..|+....+|.+||..+++|.++
T Consensus 198 ~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~-~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~--- 273 (451)
T PF03023_consen 198 KRFLKLAIPLLLSSSISQINILVDRALASFLG-EGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE--- 273 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---
Confidence 57888888888888999999999998888754 55677888899999999999999999999999999998776443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCC-CCCCCc---hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHH
Q 018885 140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQ 215 (349)
Q Consensus 140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~-kW~~~~---~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~ 215 (349)
.++.+...+|....+.+-+..+....+++++++++++ +....+ ..+++++|+..+|+.++|.++--.+.|..+++.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 6667777888888888777777779999999999954 444332 255899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885 216 LKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG 271 (349)
Q Consensus 216 l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~ 271 (349)
-.+.+....+..++.- +++.+.+|..|+.+|+.+....-....+...+|..+.
T Consensus 354 ~~~~~~~~~~lni~l~---~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~~ 406 (451)
T PF03023_consen 354 PVRISVISVVLNIILS---ILLVPFFGVAGLALATSLSAIISALLLYILLRRRLGL 406 (451)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8887777666555554 5588999999999999999988888888888877663
No 9
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.55 E-value=7e-06 Score=82.82 Aligned_cols=201 Identities=12% Similarity=0.082 Sum_probs=145.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 138 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~ 138 (349)
-|++++++.....+++...+..--|.++++++. .++.+.+++++++-. +.-.++.-+..+.-+.-|+...+++.++
T Consensus 11 ~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g-~~~laa~~~~~~~~~-~~~~~~~g~~~a~~~~vs~~~g~~~~~~-- 86 (456)
T PRK01766 11 ARQLLALALPILLAQVAQTAMGFVDTVMAGGVS-ATDLAAVAIGTSIWL-PVILFGHGLLLALTPIVAQLNGAGRRER-- 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChHH--
Confidence 468899999999999999999999999999975 457788888877633 2334455567777777888776655433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 218 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~ 218 (349)
.++.+..-++....+++...+.....++++++++..+.=..+.+.+.++++++..|+.+++.+...++++.++++.-..
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 87 -IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 6666666788888888766666667778888865433111112455789999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------hhChHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885 219 SNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFIKH 267 (349)
Q Consensus 219 ~~~~m~~~s~~fl~~~~~l~~------~~G~~GlI~AN~~nM~lRi~~s~~fI~~ 267 (349)
.+....+..+ ...++++. .+|..|..+|..+...+..+....++++
T Consensus 166 ~~~i~~ivni---~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 166 IGFLGLLINI---PLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HHHHHHHHHH---HHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766554444 34555652 3688888888777776666666555543
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.50 E-value=1.4e-05 Score=76.60 Aligned_cols=190 Identities=22% Similarity=0.235 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHH
Q 018885 70 TFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALK 149 (349)
Q Consensus 70 ~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk 149 (349)
+.+++..++..--|+++++.+. .++.|.|++++.+ ..+.+.+...+-.+..+..+|...++++++ .++.....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~a~~i-~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~---~~~~~~~~~~ 77 (342)
T TIGR00797 3 ILANILQPLLGLVDTAFVGHLG-PVDLAAVSLGSSV-FMFLFSILMGLGTATTALVAQAVGAGNYQR---LGRQAQQSLL 77 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHhHHH-HHHHHHHHHHHHHhHHHHHHHHHCCCChHH---HHHHHHHHHH
Confidence 4567788888889999999976 6778999999776 447778888999999999999887665444 5566666788
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 018885 150 LVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVI 229 (349)
Q Consensus 150 ~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~ 229 (349)
....+++++..+....++++.+++..++=....+.+.+++++..+|+.+++.+..+..++..+.+.....+... .+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~---~~~ 154 (342)
T TIGR00797 78 LALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG---NVI 154 (342)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH---HHH
Confidence 88888877777777778888875532211112245679999999999999999999999988887766555433 344
Q ss_pred HHHHHHHHHH-hh---ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885 230 YIVMNVILIQ-SA---GSVGLILANSLNMILRIIYSAIFIKH 267 (349)
Q Consensus 230 fl~~~~~l~~-~~---G~~GlI~AN~~nM~lRi~~s~~fI~~ 267 (349)
.+..++++.. .+ |..|..+|..+.-....+....++++
T Consensus 155 ~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 155 NIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555565665 44 49999999998888888877777665
No 11
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.38 E-value=5.5e-05 Score=76.91 Aligned_cols=202 Identities=17% Similarity=0.149 Sum_probs=151.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 138 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~ 138 (349)
.|++++++.....+++...+.+==|.++++++.+.++.+.+++++++-+++.-. +.=+--..-+.-||....+|.++
T Consensus 8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~-~~~~~~g~~~lvsq~~Ga~~~~~-- 84 (441)
T PRK10367 8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFML-LLFLRMSTTGLTAQAFGAKNPQA-- 84 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHH--
Confidence 578999999999999999999999999999987777788888887776554322 22344555556666665555433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 218 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~ 218 (349)
+++.....+.+...++++...++.+..+++++++..+.=....+.+-++++++..|+..++-+..+++++.++++.-..
T Consensus 85 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 85 -LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 6666666777888888888788888888988866433212223456889999999999999999999999999987655
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885 219 SNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKH 267 (349)
Q Consensus 219 ~~~~m~~~s~~fl~~~~~l~~--~~G~~GlI~AN~~nM~lRi~~s~~fI~~ 267 (349)
.+.. ..++-+..+|+++. .+|..|..+|..+...+..+....++.|
T Consensus 164 ~~ii---~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVV---GNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHH---HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 34556667777776 3799999999998888877776666654
No 12
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.36 E-value=5e-05 Score=76.66 Aligned_cols=199 Identities=15% Similarity=0.093 Sum_probs=144.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 138 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~ 138 (349)
-|++++++.....+.+...+...-+..+++++. .++.+.|++++|+.++.. .+..-+-.+.-+.-++....+|.++
T Consensus 238 ~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~~~~~-- 313 (456)
T PRK01766 238 IKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG-TVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAGRTLD-- 313 (456)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHH--
Confidence 378889999999998888888888888888875 467999999999877653 3344455555556666666665443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHH
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVATED 214 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~ 214 (349)
+++.....++....++++........++++.+++ ++ |++ +.+.++++++..|+.+++-+..+++++.++++
T Consensus 314 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf-~~---d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~ 388 (456)
T PRK01766 314 -ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLY-TD---DPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTR 388 (456)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccH
Confidence 6666666777777777665555556677777754 32 443 34578888999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018885 215 QLKRSNDSLL-VFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKHYF 269 (349)
Q Consensus 215 ~l~~~~~~m~-~~s~~fl~~~~~l~~--~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f 269 (349)
.-...+.... ++.++ ..|++.. .+|..|.-+|..+....+.+...+.+++.-
T Consensus 389 ~~~~~~~~~~~~~~i~---~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
T PRK01766 389 VIFFITFIAYWVLGLP---LGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQ 443 (456)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776543 33443 3343443 479999999999999999987777766653
No 13
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=98.31 E-value=8.4e-05 Score=75.50 Aligned_cols=202 Identities=11% Similarity=-0.003 Sum_probs=150.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885 58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 137 (349)
Q Consensus 58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~ 137 (349)
.-|++++++.....+++...+.+=-|.++++++.+.++.+.|++++.+=.+.. -+..=+..++=+.-+|....++.++
T Consensus 10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~-~~~~~~~~g~~~lvsq~~Ga~~~~~- 87 (453)
T PRK09575 10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIIL-GIGLMVGMGTGSLLSIKRGEGDLEK- 87 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHhcCCCHHH-
Confidence 56889999999999999999999999999999866778888877766544322 1222344445567777776655433
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018885 138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 217 (349)
Q Consensus 138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~ 217 (349)
.++.....++....+++++.......++++++++.++.=....+.+.++++.+..|+.+++-....++++.++++...
T Consensus 88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 88 --AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 667777788888888877777777888899986643321112345689999999999999999999999999887666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHH
Q 018885 218 RSNDSLLVFSVIYIVMNVILIQS--AGSVGLILANSLNMILRIIYSAIFIK 266 (349)
Q Consensus 218 ~~~~~m~~~s~~fl~~~~~l~~~--~G~~GlI~AN~~nM~lRi~~s~~fI~ 266 (349)
..+... .++-+..+|+++.. +|..|..+|..+...+..+....++.
T Consensus 166 ~~~~~~---~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~ 213 (453)
T PRK09575 166 GLMVIG---ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFF 213 (453)
T ss_pred HHHHHH---HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554433 34555667777763 79999999999999999888777764
No 14
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=98.29 E-value=0.00017 Score=72.76 Aligned_cols=194 Identities=13% Similarity=0.142 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHH
Q 018885 66 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA 145 (349)
Q Consensus 66 ~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~ 145 (349)
+.|.+..+++..+..=-|+.++++..++++.|.|+++..+-++..-+...-+..+.-...||...++|++ +.++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~---~~~~~~~ 81 (488)
T TIGR02900 5 TFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRK---NIKKILK 81 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchh---hHHHHHH
Confidence 4678888899999999999999999999999999999887776666555566666666666655444433 3555555
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 018885 146 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLV 225 (349)
Q Consensus 146 ~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~ 225 (349)
....+...+++++...-...++.+.+.+.++ ++....+++++..+|+.+++++.+++.++..+.+.....+....+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKD----ERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 5555555555544433334445555544332 233457889999999999999999999999999887777665555
Q ss_pred HHHHHHHH-HHHHHH---hhChHHHHHHHHHHHHHHHHHHHHHHH
Q 018885 226 FSVIYIVM-NVILIQ---SAGSVGLILANSLNMILRIIYSAIFIK 266 (349)
Q Consensus 226 ~s~~fl~~-~~~l~~---~~G~~GlI~AN~~nM~lRi~~s~~fI~ 266 (349)
.++..... .+.+.. ..|..|..+|+.+...+-.++...+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~ 202 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFK 202 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433222 111211 246667777777666665555554443
No 15
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=98.18 E-value=0.00065 Score=69.03 Aligned_cols=204 Identities=14% Similarity=0.101 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885 60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 139 (349)
Q Consensus 60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~ 139 (349)
|+.+++....+.|...-.+-.---..+++.+.+.++.+.|++++|.-++ .-....-+-.+.-+.=++....++.++
T Consensus 234 ~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga~~~~~--- 309 (453)
T PRK09575 234 PKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGARQYDN--- 309 (453)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCChHH---
Confidence 4555666555555443222222222233444444578999999887766 444566677777777888877666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCC-CCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885 140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 218 (349)
Q Consensus 140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~k-W~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~ 218 (349)
+++....-+++....+.+....-...+++++++.-.++ =.-..+.+.+++.+++.|+.+++-+..+++++.++++....
T Consensus 310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 389 (453)
T PRK09575 310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALF 389 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 66666667777777777666666667778888554221 00012355789999999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018885 219 SNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQ 270 (349)
Q Consensus 219 ~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~ 270 (349)
.+..+.++ .+...|++...+|..|.-+|..+...++.+......++..+
T Consensus 390 ~~~~~~~v---~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~~~ 438 (453)
T PRK09575 390 ISIGNMLI---QLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWRDVK 438 (453)
T ss_pred HHHHhHHH---HHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544433 34445666666899999999999999998888776666554
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=98.14 E-value=0.00089 Score=68.40 Aligned_cols=196 Identities=10% Similarity=-0.005 Sum_probs=142.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 138 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~ 138 (349)
-|+++++......|++.....+.-|..+++++.+ ++.+.+++++|+-++ .-....=+-.+.-+.=+|....+++++
T Consensus 235 ~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~-~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~~~~-- 310 (464)
T PRK00187 235 LRELWRLGLPIGGTYAVEVGLFTFAALCMGALGS-TQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGRLLE-- 310 (464)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHH--
Confidence 3789999999999999999999999999999776 799999999998875 344444566667777777776665444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCC-CCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCH
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVATE 213 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~-kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~ 213 (349)
+++.....++....++++...+....++.+++++-++ +-...+ +.+.++.+|+..|+.++|.+..+.+.+.+++
T Consensus 311 -~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~ 389 (464)
T PRK00187 311 -ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDA 389 (464)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCcc
Confidence 5565555777777777766666667788888877543 221112 2447888999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHHHHH
Q 018885 214 DQLKRSNDSLL-VFSVIYIVMNVILIQS--AGSVGLILANSLNMILRIIYSA 262 (349)
Q Consensus 214 ~~l~~~~~~m~-~~s~~fl~~~~~l~~~--~G~~GlI~AN~~nM~lRi~~s~ 262 (349)
+--...+.... ++.++ .+|++... +|..|.-+|-.+-..++.+...
T Consensus 390 ~~~~~~~~~~~~~~~ip---l~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~ 438 (464)
T PRK00187 390 RTTFLIGLACYWLVGAP---LAWLLAFTLGWGAVGVWWGLALGLACAAVALT 438 (464)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhccCCCceeeHHHHHHHHHHHHHHHH
Confidence 88777665433 33333 33334433 6888888877776666654443
No 17
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.13 E-value=0.00042 Score=70.24 Aligned_cols=198 Identities=11% Similarity=0.123 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccc-hhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhH
Q 018885 62 LANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQ-AVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 140 (349)
Q Consensus 62 ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~Q-GvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~ 140 (349)
+.+=+...+..++++.+..=-|+.++++..++++. |.|.++.++=.++.-.+. +-..-....+...+.++++ ++.
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~---~~g~~~a~i~~~~~~~~~~-~~~ 77 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFA---EGAFNSAFVPVFTKAKKKE-KEA 77 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHhhh-hHH
Confidence 34556677888899999999999999998888888 999999876544433322 1112222333222211111 234
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhcccchHHHHHHHcCCCCCCC---chHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHH
Q 018885 141 GNSLAEALKLVLLIGL-VFMAFGPSYSYSLVRLLYGKKWSDG---EASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL 216 (349)
Q Consensus 141 ~~~l~~~Lk~~~~igl-i~~~fG~~~s~~lL~ll~G~kW~~~---~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l 216 (349)
++.+..-......++. +....+...++.+.+++ ++...++ .+.+.+++.+..+|+.+++++.+++.++..+.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLL-APGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIP 156 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHH
Confidence 4444333333333333 33444667777887754 3333333 25678999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHHHH--HHHHHHHHHHHHHHHHHHHH
Q 018885 217 KRSNDSLLVFSVIYIVMNVILIQSAGSVGLI--LANSLNMILRIIYSAIFIKH 267 (349)
Q Consensus 217 ~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI--~AN~~nM~lRi~~s~~fI~~ 267 (349)
...+...- +..+...+++...+|..|+. +|.++...+..++.+.+.+|
T Consensus 157 ~~~~i~~~---i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 206 (502)
T TIGR01695 157 SFSPILFN---IGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK 206 (502)
T ss_pred HHHHHHHH---HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655433 33333333355568999988 99999988888887766654
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.04 E-value=0.00077 Score=69.34 Aligned_cols=198 Identities=15% Similarity=0.205 Sum_probs=148.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885 58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 137 (349)
Q Consensus 58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~ 137 (349)
+-|++++++.....|++...+..=-|.++++.+. .++.+.+++++++-.+ .-.++.-+-.+.-+.-+|....++.++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG-~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~- 103 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG-KEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRR- 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHH-
Confidence 4688999999999999999999999999999865 4778889998888543 334444466677777777776665444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCH
Q 018885 138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVATE 213 (349)
Q Consensus 138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~ 213 (349)
+++.....+.....++++...++...++++++++.|. .|++ +.+.+++.++..|+.+++-+..+++++.+++
T Consensus 104 --~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~--~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~ 179 (478)
T PRK10189 104 --ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGD--ATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNT 179 (478)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 6666666777777777777777778888999877532 2333 3457888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------hhChHHHHHHHHHHHHHHHHHHHHHH
Q 018885 214 DQLKRSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFI 265 (349)
Q Consensus 214 ~~l~~~~~~m~~~s~~fl~~~~~l~~------~~G~~GlI~AN~~nM~lRi~~s~~fI 265 (349)
+.-...+.... ++-+...|+++. .+|..|..+|..+.-.+..+....+.
T Consensus 180 ~~~~~i~~~~~---~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~ 234 (478)
T PRK10189 180 KIPLLINGGMN---ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVL 234 (478)
T ss_pred HHhHHHHHHHH---HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776665433 333445555653 36999999999888777776665544
No 19
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=98.00 E-value=0.00071 Score=69.09 Aligned_cols=194 Identities=17% Similarity=0.085 Sum_probs=140.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 138 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~ 138 (349)
-|+++++......|++...+..--|.++++++. .++.+.+++++.+=++.. .+..-+-.+.-+.-||....++.++
T Consensus 9 ~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg-~~alAa~~i~~~i~~~~~-~~~~gl~~~~~~i~aq~~Ga~~~~~-- 84 (464)
T PRK00187 9 LKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG-PEALAGGGLGAASYSFVS-IFCVGVIAAVGTLVAIRHGAGDIEG-- 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChhh--
Confidence 367899999999999999999999999999974 568999999988866543 4456677777788888887665444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHH
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVATED 214 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~ 214 (349)
+++.+..-+.+...++++...... ..+++++++ |. +++ +.+-++++++..|+.+++.+..+++++.++++
T Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~-~~---~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~ 158 (464)
T PRK00187 85 -ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLF-GQ---APQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAG 158 (464)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 666666666766666666555443 457888855 43 333 34478888889999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hhChHHHHHHHHHHHHHHHHHHHHHH
Q 018885 215 QLKRSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFI 265 (349)
Q Consensus 215 ~l~~~~~~m~~~s~~fl~~~~~l~~------~~G~~GlI~AN~~nM~lRi~~s~~fI 265 (349)
-....+....+. -+..+|+++. .+|..|..+|-.+.-.+-.+....++
T Consensus 159 ~~~~~~~~~~~~---ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~ 212 (464)
T PRK00187 159 PVMVISLAGAVA---NLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYI 212 (464)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 776666555444 4455666664 26889998887765444333333333
No 20
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=97.82 E-value=0.0026 Score=65.20 Aligned_cols=203 Identities=20% Similarity=0.209 Sum_probs=153.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018885 58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 137 (349)
Q Consensus 58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~ 137 (349)
..|++++++.....+++...+.+==|.+++|++. .++.+.=++++.+=.++- .++.=+--++-...||....+|.
T Consensus 15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~-~~~~gl~~g~~~liaq~~Ga~~~--- 89 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLII-AIFIGLGTGTTVLVAQAIGAGDR--- 89 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHcCCch---
Confidence 5689999999999999999999999999999998 444444444433322211 11222334444556666554443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018885 138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 217 (349)
Q Consensus 138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~ 217 (349)
++.+++...-+-+...+|++....+-..++++++++.+++=..+.+.+-+++.++-.|++.++-+.+++..+.++++.-.
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 44777777788888888888888888999999998886432445567789999999999999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885 218 RSNDSLLVFSVIYIVMNVILIQS----AGSVGLILANSLNMILRIIYSAIFIKHY 268 (349)
Q Consensus 218 ~~~~~m~~~s~~fl~~~~~l~~~----~G~~GlI~AN~~nM~lRi~~s~~fI~~~ 268 (349)
.- +++..+.-++..|+++.. +|..|..+|.++...+-.+....++.+.
T Consensus 170 ~~---~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~ 221 (455)
T COG0534 170 YI---LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRK 221 (455)
T ss_pred HH---HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54 445555666777778776 8999999999999999888888887654
No 21
>PRK15099 O-antigen translocase; Provisional
Probab=97.75 E-value=0.0039 Score=62.16 Aligned_cols=193 Identities=12% Similarity=0.014 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHH
Q 018885 63 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN 142 (349)
Q Consensus 63 l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~ 142 (349)
.+=+.|.....+++.+.+=.-.-+++++-++++.|.++.+.++-++..=..-.-+.++.-...+|. ++| .++.++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~---~~~~~~ 78 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ---PQQLRA 78 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC---HHHHHH
Confidence 344556666777777777777778999999999999998888777666554444555444444443 222 233556
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHH
Q 018885 143 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDS 222 (349)
Q Consensus 143 ~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~ 222 (349)
.....+.....++++....+...++++...++|+. +..+++.+-++..++.+++.+.++...+..+.+.-...+..
T Consensus 79 ~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~ 154 (416)
T PRK15099 79 VVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHT----DYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV 154 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777766667777777777665442 34566777776666778888888888876544443333333
Q ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885 223 LLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKH 267 (349)
Q Consensus 223 m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~ 267 (349)
..+..+.. ..+.....|..|..+|..+.-.+-.++...++.|
T Consensus 155 ~~~~~i~l---~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 155 GSLIGVAA---YYLCYRLGGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred HHHHHHHH---HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222 1112233499999999999877766666666644
No 22
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.61 E-value=0.0075 Score=54.71 Aligned_cols=167 Identities=16% Similarity=0.215 Sum_probs=104.1
Q ss_pred hhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 018885 85 LVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPS 164 (349)
Q Consensus 85 ~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk~~~~igli~~~fG~~ 164 (349)
.++++..+++|-|.|+++....++..-..-..++.+.-. ..++++ ++.++.....+.....++++..++.+.
T Consensus 9 ~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13440_consen 9 ILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDK---QDIRSLLRFSLLVSLLLAVILAILAIL 80 (251)
T ss_pred HHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999988876777666433 111221 223333333333333333333333333
Q ss_pred chHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Q 018885 165 YSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSV 244 (349)
Q Consensus 165 ~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G~~ 244 (349)
.+. .. .+++....+...+.++++.+++-+..+...+..+.+.....+....+......+..+.+ ..+..
T Consensus 81 ~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (251)
T PF13440_consen 81 IAY-----FF----GDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL--GLNLW 149 (251)
T ss_pred HHH-----Hh----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHH
Confidence 332 11 23333456777888889999999999888888877776665555555442222221111 23778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018885 245 GLILANSLNMILRIIYSAIFIKHYFQ 270 (349)
Q Consensus 245 GlI~AN~~nM~lRi~~s~~fI~~~f~ 270 (349)
+.+++.++...+..++.+.+.++..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLRRKLR 175 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC
Confidence 89999999888888888876654433
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.58 E-value=0.037 Score=50.40 Aligned_cols=186 Identities=14% Similarity=0.206 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHH
Q 018885 67 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE 146 (349)
Q Consensus 67 ~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~ 146 (349)
.+.+...++..+..=.-..++++..+++|-|.|+++.++.++..=+.-..+..+.--..++..+++ ++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~~-----~~~~~~~~~ 80 (273)
T PF01943_consen 6 LWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDKK-----ELRSAYFSS 80 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhH-----HHHHHHHHH
Confidence 344555566666666667888999999999999999999988776666677776655555544321 112222222
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHH-HHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 018885 147 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYV-VVLAMNGTSEAFLHAVATEDQLKRSNDSLLV 225 (349)
Q Consensus 147 ~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi-~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~ 225 (349)
.+......+++. .+.+.... .. .+++....+.++.... ++..++...+.+.++. ++.+......+.
T Consensus 81 ~~~~~~~~~~i~-~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 147 (273)
T PF01943_consen 81 VLFLLLIFSLIF-LLILLIAS----FF-----GNPSLSLILIILALLILILSSLSSVFSGLLQGL---QRFKYIAISNII 147 (273)
T ss_pred HHHHHHHHHHHH-HHHHHHHH----Hc-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 222222222222 22221111 11 2222223333443333 4778888888888777 344445555555
Q ss_pred HHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018885 226 FSVIYIVMNVILIQSA-GSVGLILANSLNMILRIIYSAIFIKHYFQ 270 (349)
Q Consensus 226 ~s~~fl~~~~~l~~~~-G~~GlI~AN~~nM~lRi~~s~~fI~~~f~ 270 (349)
..+...+...++.... +..+++++..+........+..+.+|.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
T PF01943_consen 148 SSLLSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKLR 193 (273)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566555555455543 47899999999999999999999988774
No 24
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.55 E-value=0.0062 Score=51.50 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHH
Q 018885 186 ALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFI 265 (349)
Q Consensus 186 ~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI 265 (349)
++|+.|...++..++...-...++.+++++..+.+....+..++. ++.+++.+|..|..+|..+............+
T Consensus 1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~---~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIIL---NYILIPRFGIYGAAIATAISEIVSFILNLWYV 77 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999998886665555554 45589999999999999999999999999999
Q ss_pred HHHhhc
Q 018885 266 KHYFQG 271 (349)
Q Consensus 266 ~~~f~~ 271 (349)
+|.++-
T Consensus 78 ~k~~~~ 83 (146)
T PF14667_consen 78 RKKIGI 83 (146)
T ss_pred HHHhCC
Confidence 999865
No 25
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.47 E-value=0.00085 Score=61.24 Aligned_cols=71 Identities=13% Similarity=0.275 Sum_probs=63.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhh
Q 018885 57 SYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS 128 (349)
Q Consensus 57 ~~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~ 128 (349)
...|++++.+.+++..++...+.++.|+++++.+.++++.|.|+++.++++.+. .+..++-...+|.+||+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~-~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 202 KFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAIS-FLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999999999655 45666666999999985
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=97.36 E-value=0.27 Score=51.71 Aligned_cols=205 Identities=18% Similarity=0.163 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885 60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 139 (349)
Q Consensus 60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~ 139 (349)
|++.....-...-.-..|++.--|..+=+.+. ...+-.+.-++-+=.+|-=++---+--...|.+||...++|.++
T Consensus 232 k~~~~~~~p~~l~~sisQi~lli~~~iAS~l~-~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~--- 307 (518)
T COG0728 232 KRFLKLMLPALLGVSISQINLLIDTAIASFLA-EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPE--- 307 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHH---
Confidence 45666666677777788888887777655553 33344555556666666666666677888899999998776443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCC-CCCCCc---hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHH
Q 018885 140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQ 215 (349)
Q Consensus 140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~-kW~~~~---~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~ 215 (349)
..+.+..-+|...++++-...+....|++++++++.. +..+.+ ..++|..|..=+|+.+++.+.-..+.|..+++.
T Consensus 308 ~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~kt 387 (518)
T COG0728 308 FLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKT 387 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCc
Confidence 5666677888888888877777779999999999986 454433 246999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885 216 LKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG 271 (349)
Q Consensus 216 l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~ 271 (349)
=.+.+..-++..+. .++.+...+|..|+.+|-.++-..-...-++..+|....
T Consensus 388 P~~i~ii~~~~n~~---l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~ 440 (518)
T COG0728 388 PMKIAIISLVVNIL---LNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVY 440 (518)
T ss_pred ChHHHHHHHHHHHH---HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 87777655555444 445577778989988877776544444455555544443
No 27
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=97.32 E-value=0.051 Score=55.75 Aligned_cols=205 Identities=16% Similarity=0.100 Sum_probs=135.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 138 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~ 138 (349)
-|+++++......+++.-..-..-=..+++++. .+.-..|+++.+.-++.- ....=+..+.-+.-.+....++.++
T Consensus 240 ~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvG~~~Ga~~~~~-- 315 (455)
T COG0534 240 LKEILRLGLPIFLESLSESLGFLLLTLFVARLG-TVALAAYGIALRIASFIF-MPPFGIAQAVTILVGQNLGAGNYKR-- 315 (455)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHHH--
Confidence 467777777777777665555555555555555 566677888777766543 2233355666666667666665444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHH
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 218 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~ 218 (349)
+++.....++....++++....=...++++.++...+.=....+...+.+.+.+.|+.++|-+....+++.++++.-.-
T Consensus 316 -a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~ 394 (455)
T COG0534 316 -ARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFI 394 (455)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 5555555666666666555444445566777755544001112345789999999999999999999999999987655
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885 219 SNDS-LLVFSVIYIVMNVILIQS-AGSVGLILANSLNMILRIIYSAIFIKHYFQG 271 (349)
Q Consensus 219 ~~~~-m~~~s~~fl~~~~~l~~~-~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~ 271 (349)
.+.. +..+. +...|++... +|..|+-++-.+...+|.+....+.++.-.+
T Consensus 395 ~~~~~~~~~~---lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~ 446 (455)
T COG0534 395 ISLLSYWGFR---LPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGRWR 446 (455)
T ss_pred HHHHHHHHHH---HhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5433 22222 3444446566 9999999999999999999998887776544
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=97.19 E-value=0.00023 Score=60.97 Aligned_cols=155 Identities=13% Similarity=0.119 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHH
Q 018885 70 TFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALK 149 (349)
Q Consensus 70 ~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk 149 (349)
..+++...+...-|..+++++ +.++.+.|+++.++.++..= +...+.++.-+.-++...++|.++ +++.....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~~-~~~g~~~a~~~~~s~~~G~~~~~~---~~~~~~~~~~ 77 (162)
T PF01554_consen 3 ALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILFM-LIFGLATALQILISQNIGAGDYKR---AKKVVRQGLL 77 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCSSSTTT---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhh-hcccccccccceeecccccccccc---cccccccccc
Confidence 467788888899999999999 99999999999999877554 777788888888888776665444 5556666788
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHH-HHHH
Q 018885 150 LVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLL-VFSV 228 (349)
Q Consensus 150 ~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~-~~s~ 228 (349)
....++++...+....++.+++++..++=....+.+.++..+...|+.+++-+..+++++.++++.....+.... ++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 157 (162)
T PF01554_consen 78 LSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINI 157 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHH
T ss_pred cchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 888888888777777777777754333222234566888888999999999999999999998887666665544 4444
Q ss_pred H
Q 018885 229 I 229 (349)
Q Consensus 229 ~ 229 (349)
+
T Consensus 158 ~ 158 (162)
T PF01554_consen 158 P 158 (162)
T ss_dssp H
T ss_pred h
Confidence 3
No 29
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=97.16 E-value=0.02 Score=54.84 Aligned_cols=110 Identities=21% Similarity=0.184 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhh
Q 018885 59 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 138 (349)
Q Consensus 59 ~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~ 138 (349)
-|+++++..+...+++...+.+.-|+.+++.+ +.++.|.|+++.++.+++ -.+...+..+..+..++...+++.++
T Consensus 215 ~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~-g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-- 290 (342)
T TIGR00797 215 LKRLLKLGLPIAFRVILESLSFALLALLVARL-GSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGDPKR-- 290 (342)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH--
Confidence 47899999999999999999999999888775 578899999999998764 57777888999999999876555333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLL 173 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll 173 (349)
.++.....++....+++.+...-...++++++++
T Consensus 291 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~ 324 (342)
T TIGR00797 291 -AKEVARVALKLSLLLGLVLAIILILFREFIARLF 324 (342)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566555667666666654444446677777754
No 30
>PRK10189 MATE family multidrug exporter; Provisional
Probab=97.14 E-value=0.18 Score=51.94 Aligned_cols=187 Identities=13% Similarity=0.018 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc---CCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchh
Q 018885 60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLD---TPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQK 136 (349)
Q Consensus 60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~---t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~ 136 (349)
++++++...... ..+..+.-.++++.+. +.+....|+++.|+-++.- ....-+..+.-+.=++....++.++
T Consensus 259 ~~il~iG~P~~~----~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~-~~~~gi~~A~~~lvg~~~Ga~~~~~ 333 (478)
T PRK10189 259 WEVMGIGIPASI----ESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALIN-LPGNALGSASTIITGTRLGKGQIAQ 333 (478)
T ss_pred HHHHHHhccHHH----HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 455555444433 3444444433333322 2356677888888876532 3334455666666666666665444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc----hHHHHHHHHHHHHHHHhhhHHHHHHHHhCC
Q 018885 137 SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVAT 212 (349)
Q Consensus 137 ~~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~----~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~ 212 (349)
+++.....++....++++...+-....+++.++.-. |++ +...+++.+.+.|+.++|-+....+.+.++
T Consensus 334 ---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~----d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~ 406 (478)
T PRK10189 334 ---AERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQ----DPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARD 406 (478)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC
Confidence 444433355554444443333333445566664422 333 245788999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHHHHH
Q 018885 213 EDQLKRSNDSL-LVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYS 261 (349)
Q Consensus 213 ~~~l~~~~~~m-~~~s~~fl~~~~~l~~--~~G~~GlI~AN~~nM~lRi~~s 261 (349)
++.....+..- .++.++ ..|++.. .+|..|+-++..+...+|.+..
T Consensus 407 t~~~~~i~~~~~~~v~ip---~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~ 455 (478)
T PRK10189 407 ARYAMWVSMLGMWGCRVV---AGYILGIMLGFGVVGVWMGMFLDWAVRGVLF 455 (478)
T ss_pred chHHHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 88776655332 223333 3333332 3799999999999888887653
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=97.13 E-value=0.053 Score=55.15 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885 60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 139 (349)
Q Consensus 60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~ 139 (349)
++..+=..|.+..++...++.=.-..++++.-+++|-|.|+.+..+-++..-+.-..++++. .| ++++++ +.
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~---~~~~~~-~~ 76 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQ---RQDISH-LQ 76 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hh---cccCCH-HH
Confidence 34445456677777787777777888999999999999999999988877766666666643 22 222111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHH
Q 018885 140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS 219 (349)
Q Consensus 140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~ 219 (349)
... .......+|++........++++-. .+++ ++...+++..+..+++.+++....+..+...+-+.....
T Consensus 77 ~~~----~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~ 147 (492)
T PRK10459 77 LST----LYWLNVGLGIVVFVLVFLLSPLIAD-FYHN----PELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKI 147 (492)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HcCC----hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHH
Confidence 222 3333334444333333333333333 3332 334567777777777777776666666665544444333
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhChHHHHHHHHHHHHHHHHHHHH
Q 018885 220 NDSLLVFSVIYIVMNVILIQ-SAGSVGLILANSLNMILRIIYSAI 263 (349)
Q Consensus 220 ~~~m~~~s~~fl~~~~~l~~-~~G~~GlI~AN~~nM~lRi~~s~~ 263 (349)
+ .+.++.....+..+.. .+|..|+++++.+.-.+..+....
T Consensus 148 ~---~~~~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 189 (492)
T PRK10459 148 E---ISAVVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLLFGY 189 (492)
T ss_pred H---HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333333333333333 368899999999987777654443
No 32
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=97.04 E-value=0.09 Score=53.80 Aligned_cols=172 Identities=15% Similarity=0.217 Sum_probs=120.8
Q ss_pred ccCCccchhHHHhhhhhhHHHHHHh-hhhhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 018885 90 LDTPYNQAVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYS 168 (349)
Q Consensus 90 ~~t~~~QGvY~lvsN~GSLvaR~lF-~PIEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~ 168 (349)
+.+.++--.|-++.++-.++.+.+. ..+..+.=|.|+|.. ++++++ .++....++.....+++++...+...++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~---~~~f~~~~~~~~~~~~~~l~~l~~lfa~~ 80 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEE---ARRFISTLLTILLIISLLLTLLGILFAPP 80 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566689999999999977776 588899999999999 444333 44444556666677777777777788889
Q ss_pred HHHHHcCCCCCCCc---hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---
Q 018885 169 LVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG--- 242 (349)
Q Consensus 169 lL~ll~G~kW~~~~---~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~~~~l~~~~G--- 242 (349)
+++++.+. +++.. +.+.+++..+++++.+++++..+..++-.+-..-. ..-++..+..+...+++.+..|
T Consensus 81 iv~~la~g-~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~---~~~l~~N~~~I~~~~~~~~~~~~~~ 156 (451)
T PF03023_consen 81 IVRLLAPG-FSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPA---LSPLLFNLSIILSLLLLSNSWGQEN 156 (451)
T ss_pred HHHHHCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHH---HHHHHHHHHHHHHHHHHHHhcCchH
Confidence 99977654 43321 34578999999999999999999998866433222 2233344444444444556678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018885 243 SVGLILANSLNMILRIIYSAIFIKHYF 269 (349)
Q Consensus 243 ~~GlI~AN~~nM~lRi~~s~~fI~~~f 269 (349)
..++.++..+-..++..+.....+|.-
T Consensus 157 i~~la~g~~~g~~~~~l~~l~~~~~~~ 183 (451)
T PF03023_consen 157 IYALAWGVLIGAIIQFLIQLPYLRRFG 183 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 778888888888888877777776653
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.83 E-value=0.0067 Score=55.03 Aligned_cols=68 Identities=19% Similarity=0.337 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhh
Q 018885 61 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS 128 (349)
Q Consensus 61 ~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~ 128 (349)
+..+.+.++..+++...+.+++|+++++.+.++++-|.|+++..+..++...+.+++....+|.+||+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999679999999999999999999999999999999998874
No 34
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=96.73 E-value=0.43 Score=48.64 Aligned_cols=199 Identities=13% Similarity=0.085 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885 60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 139 (349)
Q Consensus 60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~ 139 (349)
|++++.......|++...+-..-=..+++++.+ +..+.|++++|+.++.- ....-+..+.-+.=++....++.++
T Consensus 232 ~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~-~alAa~~I~~~i~~~~~-~~~~gl~~a~~~lvg~~~Ga~~~~~--- 306 (441)
T PRK10367 232 RRLLALNRDIMLRSLLLQLCFGAITVLGARLGS-DIIAVNAVLMTLLTFTA-YALDGFAYAVEAHSGQAYGARDGSQ--- 306 (441)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCCCHHH---
Confidence 566666666666666655555554566666654 57889999998776542 2233355666666777776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCch----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHH
Q 018885 140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEA----STALRYYCLYVVVLAMNGTSEAFLHAVATEDQ 215 (349)
Q Consensus 140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~----~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~ 215 (349)
+++.....++.....+++....=....++++++.- + |++. ...+++.+.+.|.-+++=+..+...+..+..|
T Consensus 307 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt-~---d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~d 382 (441)
T PRK10367 307 LLDVWRAACRQSGIVALLFSLVYALAGEHIIALLT-S---LPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAE 382 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHH
Confidence 44444445555555444433333344556666542 2 3322 33555555542222233344445566665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018885 216 LKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG 271 (349)
Q Consensus 216 l~~~~~~m~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~ 271 (349)
.+...++...+.. . .++....+|..|+-+|-.+...+|.+......++-+++
T Consensus 383 -t~~~~~~~~~~~~--~-~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~~~~ 434 (441)
T PRK10367 383 -MRNSMAVAAAGFA--L-TLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRHWRN 434 (441)
T ss_pred -HHHHHHHHHHHHH--H-HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222222222 1 22233457999999999999999988876655544554
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=94.77 E-value=2.7 Score=42.48 Aligned_cols=186 Identities=13% Similarity=0.102 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhhH
Q 018885 61 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 140 (349)
Q Consensus 61 ~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~~ 140 (349)
+..+=+.|.+...+...++.=.-..++++..+++|-|.|+.+...-++..++...=++.+.--.-++..++++ + ...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~--~-~~~ 83 (480)
T COG2244 7 KLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGE--Y-LLL 83 (480)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccH--H-HHH
Confidence 3444555666666777777777789999999999999999999999998888855555554333333332221 1 111
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHHHH
Q 018885 141 GNS-LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS 219 (349)
Q Consensus 141 ~~~-l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~~~ 219 (349)
... ....+.....++++...... ....+ +++....++..+.++++........+..++..+-+.....
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAY----------LLAPI-DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------Hhccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 111 11122222222222211111 00001 4445678999999999999999999999988766654443
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Q 018885 220 NDSL-LVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSA 262 (349)
Q Consensus 220 ~~~m-~~~s~~fl~~~~~l~~~~G~~GlI~AN~~nM~lRi~~s~ 262 (349)
...- .+....+.... .....+..+++.+..+.+.....+-.
T Consensus 153 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (480)
T COG2244 153 IVSSIFLLAAVFALLF--AALGLAVWALVLGAVVSLLVLLILLG 194 (480)
T ss_pred HHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 11112222111 01124666777777777766666554
No 36
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=80.05 E-value=87 Score=33.27 Aligned_cols=203 Identities=13% Similarity=0.115 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-CCccchhHHHhhhhhhHHHHHHhhhh-hhhhHHHHHhhhcCCCchhh
Q 018885 60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLD-TPYNQAVYGLVDKLGSLVVRMVFLPF-EESSYATFARSASGQYPQKS 137 (349)
Q Consensus 60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~-t~~~QGvY~lvsN~GSLvaR~lF~PI-EEs~~~~Fsk~~~~~~~~~~ 137 (349)
+.+++-..++..-.++..++==--..+++... +-..--.|.++..+=.+.-|++--.. ..+.=|.|+|..+++.+++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 44555555555555555544444344555555 44666789999999999888877665 55556778877765533322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCc---hHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHH
Q 018885 138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATED 214 (349)
Q Consensus 138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~---~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~ 214 (349)
++.++. ..-....+.++....|...+|.+++.+.|+.|.+++ +..+.++-.+|+++..+.++.-+..++...
T Consensus 87 ~~f~~~---v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~-- 161 (518)
T COG0728 87 RFFSRL---VTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNR-- 161 (518)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCe--
Confidence 222222 222444555555556778888999899999873332 345678888999999988887777666431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hC-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018885 215 QLKRSNDSLLVFSVIYIVMNVILIQS-AG-SVGLILANSLNMILRIIYSAIFIKHY 268 (349)
Q Consensus 215 ~l~~~~~~m~~~s~~fl~~~~~l~~~-~G-~~GlI~AN~~nM~lRi~~s~~fI~~~ 268 (349)
-.--+..=+.++++.+..+..+.+. .+ ..++.++-.+-..+-..+-+-..+|.
T Consensus 162 -F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~ 216 (518)
T COG0728 162 -FFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA 216 (518)
T ss_pred -echhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111222233333333222222222 34 34666667777777777777766654
No 37
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=63.07 E-value=1.3e+02 Score=31.29 Aligned_cols=178 Identities=19% Similarity=0.133 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhhhh
Q 018885 60 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 139 (349)
Q Consensus 60 ~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~~~ 139 (349)
|++..++.....-.+.+..+.--|...+|++.+. +....+++++-.+...+-+..=+.-+.-+..+|.-..++-+ .
T Consensus 28 k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l-eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~---~ 103 (473)
T KOG1347|consen 28 KELARLALPAILTFLAQPLLSLVSTAFAGHLGNL-ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT---A 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch-HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc---h
Confidence 6778888887778888888888888899999888 88888988887776555444444444444444444332211 1
Q ss_pred HHHHHH----HHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHH----HHHHHhhhHHHHHHHHhC
Q 018885 140 IGNSLA----EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLY----VVVLAMNGTSEAFLHAVA 211 (349)
Q Consensus 140 ~~~~l~----~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~y----i~~lA~NGi~EAf~~a~a 211 (349)
+...++ .++.....+.++. .++++++..+.. +++....-+.|+.+ ++-.+++=..+.|.++
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~-----~~~~~il~~lgq----~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~-- 172 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLI-----LNSEPILLLLGQ----DPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQA-- 172 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----HccHHHHHHhCC----ChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHh--
Confidence 111111 1111122222222 334556654443 33334444555543 3333444445566662
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHH
Q 018885 212 TEDQLKRSNDSLLVFSVIYIVMNVILIQS--AGSVGLILANSLN 253 (349)
Q Consensus 212 ~~~~l~~~~~~m~~~s~~fl~~~~~l~~~--~G~~GlI~AN~~n 253 (349)
.+...-....-.+.....+..+|++... +|..|..+|..++
T Consensus 173 -Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s 215 (473)
T KOG1347|consen 173 -QSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVAS 215 (473)
T ss_pred -ccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHH
Confidence 2333344445555666777888888776 5766666665554
No 38
>COG3628 Phage baseplate assembly protein W [General function prediction only]
Probab=57.61 E-value=5 Score=34.01 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.0
Q ss_pred hhhhhhHHHHHHhhhhhhhhHHH
Q 018885 102 VDKLGSLVVRMVFLPFEESSYAT 124 (349)
Q Consensus 102 vsN~GSLvaR~lF~PIEEs~~~~ 124 (349)
=-||||..-|++++|++++.+.-
T Consensus 40 Rp~yGs~L~~Lid~p~~~a~~~~ 62 (116)
T COG3628 40 RPDYGSNLPRLIDQPINPALRSR 62 (116)
T ss_pred ccccccchHHHHhcccCHHHHHH
Confidence 36999999999999999997643
No 39
>COG1347 NqrD Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]
Probab=39.44 E-value=2e+02 Score=26.31 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=24.3
Q ss_pred HHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhC
Q 018885 168 SLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVA 211 (349)
Q Consensus 168 ~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a 211 (349)
...+.++.+-|.+. |..+|+...+-.+--=.-..-|++++.|
T Consensus 6 ~~k~~~~~p~~~NN--pi~lqiLGiCSALAVTt~l~TA~vM~~a 47 (208)
T COG1347 6 SYKHLLFSPLWDNN--PIALQILGICSALAVTTKLETAIVMGIA 47 (208)
T ss_pred HHHHHhhchhhhCC--hHHHHHHHHhHHHhhhhhHHHHHHHHHH
Confidence 44556677788887 7788887776554222222234444443
No 40
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=25.82 E-value=2.5e+02 Score=29.64 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=54.0
Q ss_pred HhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhChH--HH--HHHHHHHHHHHHHHHHHHHHHHhhc-
Q 018885 198 AMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVM-NVILIQSAGSV--GL--ILANSLNMILRIIYSAIFIKHYFQG- 271 (349)
Q Consensus 198 A~NGi~EAf~~a~a~~~~l~~~~~~m~~~s~~fl~~-~~~l~~~~G~~--Gl--I~AN~~nM~lRi~~s~~fI~~~f~~- 271 (349)
++|-.++.|.- +.+.....|..-++.++++... .|++ ..+|.. ++ .+.||+--.+|.+=+.-|+...|.+
T Consensus 66 ~i~n~~~~~Yg---s~~~~~wlsmIym~v~vp~gf~~mw~l-dk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~ 141 (480)
T KOG2563|consen 66 PINNYVNSFYG---SSSAADWLSMIYMVVSVPFGFAAMWIL-DKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRP 141 (480)
T ss_pred hHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhhHHHHhh-cccchHHHHHHHHHHHHHHHHHhhhccCccccccchhh
Confidence 56666666665 5666667776666666666655 4444 335543 33 2579999999999999888888774
Q ss_pred ----C-----CCccccccCCChh
Q 018885 272 ----S-----SSFSFRSSLPSGW 285 (349)
Q Consensus 272 ----~-----~~~~~~~~~p~~~ 285 (349)
. ...++--.+|++.
T Consensus 142 l~~~Gq~iaa~Aq~Fim~lPski 164 (480)
T KOG2563|consen 142 LTHTGQSIAAAAQPFILGLPSKI 164 (480)
T ss_pred hhHHhHHHHHHhhhHhhccccHH
Confidence 1 1134555666664
No 41
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=25.68 E-value=3.7e+02 Score=23.03 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCccccccCCChhhHHHHHHHHH
Q 018885 219 SNDSLLVFSVIYIVMNVILIQ-SAGSVGLILANSLNMILRIIYSAIFIKHYFQG--SSSFSFRSSLPSGWPILLVSGVIT 295 (349)
Q Consensus 219 ~~~~m~~~s~~fl~~~~~l~~-~~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~--~~~~~~~~~~p~~~~~~~~s~~~~ 295 (349)
+...+.+.++++.++.+.+.. ..+.....+-+.+++..=++.....+++|=++ ....++++.+-......++++++.
T Consensus 2 ~g~i~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~R~~~~~g~isf~~a~~~g~~~~~ia~li~ 81 (163)
T PF13858_consen 2 YGLIFGLILILFFLLSYLLGMHDIKYPSNSWLGILSMVITIIFIYFAIRRYRKKYNGGFISFGQAFKVGFLISLIAGLIS 81 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeeHHHHHHHHHHHHHHHHHHH
Confidence 345566677776666665533 23444555557777777666665555444323 235677775544334445555555
Q ss_pred HhhhHhh
Q 018885 296 LFSERIF 302 (349)
Q Consensus 296 ~~s~~~~ 302 (349)
.+....+
T Consensus 82 ~v~~~i~ 88 (163)
T PF13858_consen 82 AVFQYIY 88 (163)
T ss_pred HHHHHHH
Confidence 5544443
No 42
>PRK09781 hypothetical protein; Provisional
Probab=20.16 E-value=45 Score=29.55 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=25.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC
Q 018885 55 MMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP 93 (349)
Q Consensus 55 ~~~~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~ 93 (349)
+.++|++ ..|.++.|.|.|||+++.....|.
T Consensus 28 St~W~~~--------IV~~LINQvLdege~f~ga~vlta 58 (181)
T PRK09781 28 STSWHKD--------IVAELINQVLRCGAALIIIAVLTA 58 (181)
T ss_pred cccchHH--------HHHHHHHHHHhhhhhhhhHHHhhh
Confidence 3567876 468899999999999998877654
Done!