Query 018885
Match_columns 349
No_of_seqs 165 out of 257
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 07:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018885.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018885hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqga1 a.27.1.1 (A:397-606) M 9.5 2.5E+02 0.018 21.8 6.0 35 140-174 90-124 (210)
2 d2d5ba1 a.27.1.1 (A:349-500) M 8.7 40 0.0029 25.7 0.4 14 101-114 1-14 (152)
3 d1jb0x_ f.23.20.1 (X:) Subunit 6.0 2.3E+02 0.017 15.6 2.7 20 192-211 9-28 (29)
4 d1j2jb_ a.7.8.1 (B:) ADP-ribos 5.2 2.8E+02 0.021 16.8 3.0 24 124-147 10-33 (41)
5 d1muka_ e.8.1.4 (A:) Reovirus 4.1 1.4E+02 0.01 29.9 1.4 33 82-114 882-914 (1264)
6 d1f7ua3 d.67.2.1 (A:2-135) Arg 3.5 3.1E+02 0.023 20.3 2.8 18 68-85 116-133 (134)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 3.5 3.3E+02 0.024 18.8 3.0 25 144-168 3-27 (158)
8 d1v54m_ f.23.7.1 (M:) Mitochon 3.4 3.3E+02 0.024 16.7 2.3 17 237-253 23-39 (43)
9 d1eg3a2 a.39.1.7 (A:210-306) D 2.9 5.6E+02 0.041 18.0 3.6 39 117-155 2-40 (97)
10 d1pfva1 a.27.1.1 (A:389-550) M 2.4 6.8E+02 0.049 18.2 3.9 37 139-175 84-120 (162)
No 1
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=9.55 E-value=2.5e+02 Score=21.84 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHc
Q 018885 140 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLY 174 (349)
Q Consensus 140 ~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~ 174 (349)
+..++...+...-.++.+.-||=|-.|.-+...+.
T Consensus 90 ~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg 124 (210)
T d1rqga1 90 TGTTVNISLQIVKALGILLEPFLPDASEKIWHLLN 124 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcC
Confidence 44566677777888888888999999999888664
No 2
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=8.66 E-value=40 Score=25.72 Aligned_cols=14 Identities=50% Similarity=0.631 Sum_probs=11.8
Q ss_pred HhhhhhhHHHHHHh
Q 018885 101 LVDKLGSLVVRMVF 114 (349)
Q Consensus 101 lvsN~GSLvaR~lF 114 (349)
||||||.|+-|.+-
T Consensus 1 LaN~lGNlv~R~~~ 14 (152)
T d2d5ba1 1 LADDLGNLVQRTRA 14 (152)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 58999999999664
No 3
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=6.02 E-value=2.3e+02 Score=15.58 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=14.8
Q ss_pred HHHHHHHhhhHHHHHHHHhC
Q 018885 192 LYVVVLAMNGTSEAFLHAVA 211 (349)
Q Consensus 192 ~yi~~lA~NGi~EAf~~a~a 211 (349)
+.+.++|+|=+..|+..+.+
T Consensus 9 wa~lllainflvaayyfaaa 28 (29)
T d1jb0x_ 9 WAVLLLAINFLVAAYYFAAA 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888776654
No 4
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.20 E-value=2.8e+02 Score=16.77 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=15.7
Q ss_pred HHHhhhcCCCchhhhhHHHHHHHH
Q 018885 124 TFARSASGQYPQKSKKIGNSLAEA 147 (349)
Q Consensus 124 ~Fsk~~~~~~~~~~~~~~~~l~~~ 147 (349)
..++++.+++|++.+.+.+...++
T Consensus 10 lL~~LLkS~~PeDLqaANrLIK~m 33 (41)
T d1j2jb_ 10 MLARLLKSSHPEDLRAANKLIKEM 33 (41)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 467888888887766655544433
No 5
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId: 10891]}
Probab=4.13 E-value=1.4e+02 Score=29.90 Aligned_cols=33 Identities=12% Similarity=0.387 Sum_probs=27.7
Q ss_pred hhhhhhhhccCCccchhHHHhhhhhhHHHHHHh
Q 018885 82 GEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVF 114 (349)
Q Consensus 82 Gdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF 114 (349)
-|.++-+.+.++.|||.|++.++.--+++|--.
T Consensus 882 ~~P~i~S~yMP~GD~gmfsil~~~R~l~t~~~~ 914 (1264)
T d1muka_ 882 SDPWIFSWYMPTGDLGMYSWISLIRPLMTRWMV 914 (1264)
T ss_dssp CCTTCBCTTCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeecccCCCchhHHHHHHHHHHHHHhhhc
Confidence 366778888899999999999999888886543
No 6
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.48 E-value=3.1e+02 Score=20.31 Aligned_cols=18 Identities=17% Similarity=0.085 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 018885 68 LFTFQSFRKLLLQEGEKL 85 (349)
Q Consensus 68 ~~~~Qsi~K~lLTEGdk~ 85 (349)
..+.+.+++.+++|||+|
T Consensus 116 ~~l~~~vl~~Il~~~~~Y 133 (134)
T d1f7ua3 116 QFLAKLVIPDILTRKEDY 133 (134)
T ss_dssp HHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 345678999999999986
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.46 E-value=3.3e+02 Score=18.84 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccchHH
Q 018885 144 LAEALKLVLLIGLVFMAFGPSYSYS 168 (349)
Q Consensus 144 l~~~Lk~~~~igli~~~fG~~~s~~ 168 (349)
|.+++-++.+||+++...-|.|...
T Consensus 3 LIELlVViaIIgILaaia~P~~~~~ 27 (158)
T d2pila_ 3 LIELMIVIAIVGILAAVALPAYQDY 27 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888887777765543
No 8
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.38 E-value=3.3e+02 Score=16.66 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=11.1
Q ss_pred HHHhhChHHHHHHHHHH
Q 018885 237 LIQSAGSVGLILANSLN 253 (349)
Q Consensus 237 l~~~~G~~GlI~AN~~n 253 (349)
++..++..|-|++|.=|
T Consensus 23 f~~~L~PaGwVLshLe~ 39 (43)
T d1v54m_ 23 FLSFLLPAGWVLYHLDN 39 (43)
T ss_dssp HHHHHHHHHHHHHTHHH
T ss_pred HHHHHccHHHHHHHHHH
Confidence 33446788888887643
No 9
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.94 E-value=5.6e+02 Score=18.05 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=23.9
Q ss_pred hhhhhHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHH
Q 018885 117 FEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIG 155 (349)
Q Consensus 117 IEEs~~~~Fsk~~~~~~~~~~~~~~~~l~~~Lk~~~~ig 155 (349)
+||=.|-.|++..+....-..+++...|.+.+++=..+|
T Consensus 2 L~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vg 40 (97)
T d1eg3a2 2 LEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLG 40 (97)
T ss_dssp HHHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 577778889998654432233456666666666554443
No 10
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=2.45 E-value=6.8e+02 Score=18.15 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcC
Q 018885 139 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG 175 (349)
Q Consensus 139 ~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G 175 (349)
.+..++...+...-.++.+.-||=|..|.-++..+.-
T Consensus 84 ~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~ 120 (162)
T d1pfva1 84 DLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 120 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCC
Confidence 4667788888888889999999999999998886543
Done!