BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018889
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XOC|A Chain A, The Structure Of The Oligopeptide-Binding Protein, Appa,
From Bacillus Subtilis In Complex With A Nonapeptide
Length = 520
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 26 KPHLEGLVI-----ATCASGNL--GNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFS 78
+P+L+ + A A L G++ VPA ++ F N + + + LSY
Sbjct: 211 RPYLDTVTYKVIPDANAAEAQLQAGDINFFNVPATDYKTAEKFNNLKIVTDLALSYV--- 267
Query: 79 MALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEV 117
+ W+ +L K VR +AL A + E + +V
Sbjct: 268 -----YIGWNEKNELFKDKKVR-QALTTALDRESIVSQV 300
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 295 VLMVQFTLPPAMNIGTMTQLFDVAQEE---CSVLFLWTYLVAALALTGWSMV 343
+L++ +LPP + + +TQL AQ++ C V L AALA+ +V
Sbjct: 133 ILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELV 184
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 295 VLMVQFTLPPAMNIGTMTQLFDVAQEE---CSVLFLWTYLVAALALTGWSMV 343
+L++ +LPP + + +TQL AQ++ C V L AALA+ +V
Sbjct: 133 ILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELV 184
>pdb|3TYW|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|C Chain C, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|D Chain D, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|4FXB|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces
Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
Siderophore Biosynthetic Pathway
pdb|4FXB|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces
Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
Siderophore Biosynthetic Pathway
Length = 417
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 207 LRNLIIGDSAPLRVIQDSIEILGDGTIPC----ITLILGGN 243
LR L + DS PLRV + IE+ G T+P I L+ G N
Sbjct: 290 LRVLSVADSIPLRVAAEDIELSG-RTVPADDGVIALLAGAN 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,289,820
Number of Sequences: 62578
Number of extensions: 339337
Number of successful extensions: 951
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 7
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)