BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018889
         (349 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P38355|YB8B_YEAST Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1
          Length = 427

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 140/355 (39%), Gaps = 38/355 (10%)

Query: 1   MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL-------LLIIVPAI 53
           +P+   +T  I  I G I+ ++L         V+A    GN  +L       L   +P +
Sbjct: 77  IPIFFGLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPNL 136

Query: 54  CHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY-QLIKQSSVRYKALAQAAEPEE 112
             +Q  P  NRD  +S G+ Y      +G    WS+ Y +L+K S        Q   P +
Sbjct: 137 TWDQ-IPNDNRDNVASRGILYLLIFQQIGQMLRWSWGYNKLMKWSGEN----TQHMPPSQ 191

Query: 113 VPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESF 172
           V            Q+ L R    D E++       +   + E   +        +  +  
Sbjct: 192 V------------QSLLERTPNIDNEELVNEEQEEQELLEEENNRMNSSFLSSSSIGDKI 239

Query: 173 WKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWL-RNLIIGDSAPLRVIQDSIEILGDG 231
           W++S     ++   L  PP  + I   +  A+  L R L + D        +++  LG  
Sbjct: 240 WQKSCTVFERIRANL-NPPLYSMIFAVVVAAIGPLQRELFMEDGFINNTFAEAVTQLGSV 298

Query: 232 TIPCITLILGGNLI---QGLRSSTLKPLIIIAVVCVRYIA-----LPFIGVWVVKAAAAL 283
           +IP I ++LG NL    +    +     ++I  +  R I      LP I + V     ++
Sbjct: 299 SIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGSIIGRMILPSCFLLPIIAIAVKYINVSI 358

Query: 284 GFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT 338
                DP++  V  +    PPA+ +  +TQL +  + E + +  W Y V +L ++
Sbjct: 359 L---DDPIFLVVGFLLTVSPPAIQLTQITQLNEFFEAEMADILFWGYAVLSLPVS 410


>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
          Length = 452

 Score = 40.8 bits (94), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/347 (18%), Positives = 135/347 (38%), Gaps = 38/347 (10%)

Query: 14  ILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGS------PFGNRDVC 67
           ++ +++ KL R  P       A     N  +L L +V ++            P    D  
Sbjct: 95  LISFLLAKLFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDLLWDKIPDDTPDKV 154

Query: 68  SSVGLSYASFSMALGGFFIWSYSYQLIKQSS-------VRYKALAQAAEPEEVPKEVNKD 120
           +S G+ Y      LG    WSY Y+++   +       +  ++ + +   EE   E+   
Sbjct: 155 ASRGIMYLLIFSQLGQALRWSYGYRILLSPNQPEDPLPIGNRSWSHSDVNEE---EIQNL 211

Query: 121 FDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFL 180
             ++A    ++ +    E  +V   S+  S +   Q+   + S+ +          +   
Sbjct: 212 LASSANVDGVQNSVQANEGSTVQTDSSAISKNDNVQV---ETSNEEVGGFGAASSKISKF 268

Query: 181 HQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLR-VIQDSIEILGDGTIPCITLI 239
             LL +  +PP  +  +      V  L+     + + +   I   I + G   +P I ++
Sbjct: 269 IVLLLDFFSPPLYSLFIALFIAVVPPLQRFFFEEGSFVEGSITSGIRMAGQVAVPMILVV 328

Query: 240 LGGNL---------IQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP--- 287
           LG +L          Q +R +    +II+ ++  R + +P     ++ A + L +     
Sbjct: 329 LGASLATDISKTEPTQEVRKNNDTRVIIVCLLG-RMVVVPLA---LLPAFSLLSYFSEIS 384

Query: 288 --SDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLV 332
              DP++  V+ +    P A+ +  + QL  V + EC+ +  W+Y V
Sbjct: 385 TVDDPVFVVVIFLLVGSPTAIQLTQICQLNGVFERECAKVLWWSYAV 431


>sp|P54072|YL152_YEAST Uncharacterized transporter YLR152C OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=YLR152C PE=1 SV=1
          Length = 576

 Score = 37.7 bits (86), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 119/280 (42%), Gaps = 40/280 (14%)

Query: 91  YQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDA-----NAQTQLLRGTTDDQEDVSVL-- 143
           +  I  SS+ Y  +++ ++     ++   D +      +A  ++ +G  D    +S+   
Sbjct: 280 FSRIDGSSLSYSRISKNSDGRSYRRKRKADMNELISKYSAAEKIRQGELDLSRPLSLTEE 339

Query: 144 -------VASTKSSSDPECQIIVPQASHLQTRKE---SFW--KRSLEFLHQLLEELLAPP 191
                  + +  +    E  I     +++ T      SF+  + +L++L   +   L P 
Sbjct: 340 VGSRNASIGNVHTGYTDESSIEEENCTNMATDGRGSLSFFIERHNLKWLQYFIINCLRPA 399

Query: 192 TLAAIVGFIFGAVVWLRNLIIG---------DSAP-LRVIQDSIEILGDGTIPCITLILG 241
           +L AI+G I   + W++   +          D  P L  + D  E +G+  +P   L+LG
Sbjct: 400 SLGAILGIICALIPWVKACFVTTYVHVHKAPDGEPVLNFLMDFTEYIGNACVPLGLLLLG 459

Query: 242 GNLIQGLRSSTLKPLII---IAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMV 298
           G L + L   +L P  I   + + C R I +P IGV  V    ++ +L +  +  + +++
Sbjct: 460 GTLAR-LEIKSLPPGFIKSALLMTCFRLIVIPIIGVLWVNKLYSIDWLDTG-IGKFDMIL 517

Query: 299 QFTLPPAMNIGTMTQLF-----DVAQEEC-SVLFLWTYLV 332
            +++P A      T  +     D  Q  C SVLF+  Y +
Sbjct: 518 TWSMPSATAQVYFTAFYTPACGDHIQMNCLSVLFVMQYAI 557


>sp|A1T741|IDI2_MYCVP Isopentenyl-diphosphate delta-isomerase OS=Mycobacterium
           vanbaalenii (strain DSM 7251 / PYR-1) GN=fni PE=3 SV=1
          Length = 342

 Score = 32.0 bits (71), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 39  SGNLGNLL----LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 94
           SG++G L      I  P +  E G   G       VG   A+  +A  G   W+   Q +
Sbjct: 175 SGSIGRLCDVAGAIGYPVVLKEVGHGIGAAAAAELVGCPIAAIDVAGAGGTSWARIEQFV 234

Query: 95  KQSSVRYKALAQ 106
           +   VRY ALA+
Sbjct: 235 RYGDVRYPALAE 246


>sp|Q3AFC6|HPPA_CARHZ Putative K(+)-stimulated pyrophosphate-energized sodium pump
           OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
           DSM 6008) GN=hppA PE=1 SV=1
          Length = 686

 Score = 31.6 bits (70), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 232 TIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPL 291
           T P   +I G  +  G+RS+ L  ++I+A + V Y A  F G+    A AA+G L +  +
Sbjct: 365 TGPATNIISG--IAVGMRSTYLPIIVIVAAIMVGYWAAGFYGI----ALAAMGMLATAAM 418

Query: 292 YHYVLMVQFTLPPAMNIGTMTQLFDVAQE 320
              V+ V    P A N G + ++ ++  E
Sbjct: 419 ---VVAVDSFGPVADNAGGIAEMAELGPE 444


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,825,887
Number of Sequences: 539616
Number of extensions: 4955991
Number of successful extensions: 15872
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 15863
Number of HSP's gapped (non-prelim): 20
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)