Query 018889
Match_columns 349
No_of_seqs 115 out of 198
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 9.8E-97 2E-101 711.2 21.9 325 1-349 78-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 5.6E-38 1.2E-42 309.6 19.8 314 1-341 65-385 (385)
3 TIGR00946 2a69 he Auxin Efflux 99.8 4.2E-18 9E-23 165.5 16.0 241 7-343 76-319 (321)
4 COG0679 Predicted permeases [G 99.7 2.9E-17 6.3E-22 159.7 13.4 239 5-346 71-309 (311)
5 PRK09903 putative transporter 99.7 1.7E-15 3.7E-20 147.1 15.5 236 6-343 72-309 (314)
6 TIGR00841 bass bile acid trans 97.5 0.00035 7.5E-09 67.5 8.4 108 233-346 14-122 (286)
7 PF01758 SBF: Sodium Bile acid 93.5 0.22 4.8E-06 44.9 6.7 108 233-345 4-112 (187)
8 COG0385 Predicted Na+-dependen 90.8 1.1 2.5E-05 44.2 8.4 108 232-345 43-151 (319)
9 PF13593 DUF4137: SBF-like CPA 89.3 2.5 5.3E-05 41.6 9.4 140 191-345 3-147 (313)
10 TIGR00832 acr3 arsenical-resis 86.4 3.7 8.1E-05 40.6 8.8 106 235-346 51-158 (328)
11 TIGR00841 bass bile acid trans 61.0 13 0.00028 35.8 4.7 38 6-43 202-239 (286)
12 PF06295 DUF1043: Protein of u 52.2 14 0.0003 31.6 2.9 22 5-26 2-23 (128)
13 COG0385 Predicted Na+-dependen 47.5 21 0.00046 35.4 3.7 41 4-44 228-268 (319)
14 TIGR00832 acr3 arsenical-resis 37.4 22 0.00048 35.1 2.1 47 6-55 253-299 (328)
15 PF09925 DUF2157: Predicted me 36.5 1.9E+02 0.0042 24.7 7.7 71 264-335 63-133 (145)
16 PRK11677 hypothetical protein; 35.2 35 0.00075 29.7 2.7 23 4-26 5-27 (134)
17 COG3771 Predicted membrane pro 28.1 23 0.00051 28.7 0.4 24 7-30 47-70 (97)
18 PF06305 DUF1049: Protein of u 27.8 63 0.0014 23.8 2.7 22 3-24 22-43 (68)
19 TIGR00793 kdgT 2-keto-3-deoxyg 23.0 1.2E+02 0.0027 30.0 4.4 52 8-80 81-132 (314)
20 PF03672 UPF0154: Uncharacteri 22.2 93 0.002 23.7 2.7 18 4-21 2-19 (64)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.8e-97 Score=711.17 Aligned_cols=325 Identities=48% Similarity=0.911 Sum_probs=272.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCCCCcCeeEEEeecCCcChhHHHHHHHHhhccCCCCCChhhhhhhhhHHHHHHhh
Q 018889 1 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMA 80 (349)
Q Consensus 1 mPvn~llt~~iG~~lGwlv~~i~~~P~~~~~~vv~~~~~GN~gnLPl~lv~slc~~~~~PFg~~d~c~~~GiaYis~~~~ 80 (349)
||||+++||++|+++||+++|++|||+++|||+++||+|||+||||+++++|+|++|++||||+|+|++||++|++||||
T Consensus 78 iPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~ 157 (408)
T KOG2722|consen 78 IPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQ 157 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceeEEeeeccccccchh-hhhhhhcCCCCCCCCcccCccccchhhhhcccCCCC---CcccchhhccCCCCCCCcccc
Q 018889 81 LGGFFIWSYSYQLIKQSSV-RYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTD---DQEDVSVLVASTKSSSDPECQ 156 (349)
Q Consensus 81 lg~i~~wt~~y~llr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (349)
+|++++|||+||++.+++. ++...+++ +++... ++-. .+..++ +++++..+ +..++++.+
T Consensus 158 lg~il~wty~Y~~~~~p~~~~~~~~~~~-~Ve~~~----------~~~~-~~s~e~~~~~~~k~~ll----~~~en~~~~ 221 (408)
T KOG2722|consen 158 LGQILRWTYVYRMLLPPNLELMSALKES-PVEALL----------ESVP-QPSVESDEDSTCKTLLL----ASKENRNNQ 221 (408)
T ss_pred hhhhEEEEEEeeeecCCchhhhhcCChh-hhhhhh----------hccC-CCCcccccccccccccc----cccccCCCc
Confidence 9999999999997766532 22222211 111110 0000 000001 11111111 111111111
Q ss_pred cccccccccchhhhhhhHhHHHHHH-HHHHHhhChhHHHHHHHHHHhchhhhhHhhcCCCCchhHHHHHHHHhcCcchhH
Q 018889 157 IIVPQASHLQTRKESFWKRSLEFLH-QLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPC 235 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~PPtia~ilg~iVG~VppLr~l~f~~~apL~~i~~s~~~lG~a~IP~ 235 (349)
...++.+.++|.+...+ ..++++++|||||+++|+++|+||||||++||++||||+|||+++++|+++|||
T Consensus 222 --------~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~ 293 (408)
T KOG2722|consen 222 --------VVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPC 293 (408)
T ss_pred --------eeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchh
Confidence 11122333444443333 349999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCC-CChHHHHHHHhhccCchhhHHHHHHHh
Q 018889 236 ITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLMVQFTLPPAMNIGTMTQL 314 (349)
Q Consensus 236 illvLGanL~~g~~~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~-~Dp~~~fVl~l~~~~P~Ai~~~~i~ql 314 (349)
|+++|||||++|+++|.++.++++|++++|||++|+.|+++|..|+|+|+++ |||+|+||++||+++|||||++|||||
T Consensus 294 illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL 373 (408)
T KOG2722|consen 294 ILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQL 373 (408)
T ss_pred hhhhhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018889 315 FDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS 349 (349)
Q Consensus 315 ~~~~e~e~s~ilfw~Y~~~~~~lt~w~~~~~~l~~ 349 (349)
||++|+|||+||||+|+++++++|+|+++|+|++.
T Consensus 374 ~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 374 NGVAERECSVILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999973
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=5.6e-38 Score=309.56 Aligned_cols=314 Identities=27% Similarity=0.438 Sum_probs=228.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCCCCcCeeEEEeecCCcChhHHHHHHHHhhccCCCCCChhhhhhhhhHHHHHHhh
Q 018889 1 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMA 80 (349)
Q Consensus 1 mPvn~llt~~iG~~lGwlv~~i~~~P~~~~~~vv~~~~~GN~gnLPl~lv~slc~~~~~PFg~~d~c~~~GiaYis~~~~ 80 (349)
+|++..+.+++++++||++.|++|.|++.|+..+.||+++|.|++|+.++.+++.+ +|++|+.++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~ 131 (385)
T PF03547_consen 65 IPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDV 131 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHH
Confidence 35678899999999999999999999999999999999999999999999999997 88999999999
Q ss_pred hcceeEEeeeccccccchhhhhhhhcCC-CCCCCCc-ccCccccchhhhhcccCCCCCc--cc-chhhccCCCCCCCccc
Q 018889 81 LGGFFIWSYSYQLIKQSSVRYKALAQAA-EPEEVPK-EVNKDFDANAQTQLLRGTTDDQ--ED-VSVLVASTKSSSDPEC 155 (349)
Q Consensus 81 lg~i~~wt~~y~llr~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~ 155 (349)
++.++.|++++.+++.+.++.++.++++ +.+...+ +..+++...+++. +...+++ ++ ..... +.+...+.+.
T Consensus 132 ~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 208 (385)
T PF03547_consen 132 VNNIILWSLGYFLLESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSS--PSSTEEEIDEDGSPSST-PSQSSASAPS 208 (385)
T ss_pred hhHHHHHHHHHHhhcccccccccccccccccccccccccCCccccCCccc--ccccccccccCCccccc-ccccccccch
Confidence 9999999999998877644322111110 0000000 0000000000000 0001100 00 00000 0000000000
Q ss_pred cccc-ccccccchhhhhhhHhHHHHH-HHHHHHhhChhHHHHHHHHHHhchhhhhHhhcCCCCchhHHHHHHHHhcCcch
Q 018889 156 QIIV-PQASHLQTRKESFWKRSLEFL-HQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTI 233 (349)
Q Consensus 156 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~PPtia~ilg~iVG~VppLr~l~f~~~apL~~i~~s~~~lG~a~I 233 (349)
.... .+.+.....+.+.+++.++.. +..++.++|||++|+++|++++++|++|+++++ .+++++++++|++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~ 283 (385)
T PF03547_consen 209 SVSTSPSPSNSTGAEQKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAV 283 (385)
T ss_pred hhccCCcccccchhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhH
Confidence 0000 000000011122222222222 233788999999999999999999999999998 799999999999999
Q ss_pred hHHHHhhhcccccccccCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHHHHH
Q 018889 234 PCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQ 313 (349)
Q Consensus 234 P~illvLGanL~~g~~~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~i~q 313 (349)
|+.++++|++|+++++....+.+.....++.|++++|++++++++... -|+....+++++.++|||++...++|
T Consensus 284 pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l~~~~~~~~~~~~~~P~a~~~~~~a~ 357 (385)
T PF03547_consen 284 PLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG------LDGDMARVLILQAAMPTAINSFVIAS 357 (385)
T ss_pred HHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHhccCCchHHHHHHHH
Confidence 999999999999998888888888888899999999999999988654 36667889999999999999999999
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHH
Q 018889 314 LFDVAQEECSVLFLWTYLVAALALTGWS 341 (349)
Q Consensus 314 l~~~~e~e~s~ilfw~Y~~~~~~lt~w~ 341 (349)
+||.+++++|.+++|+|+++.+++++|+
T Consensus 358 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 358 LYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999995
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.78 E-value=4.2e-18 Score=165.52 Aligned_cols=241 Identities=20% Similarity=0.189 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHH-HhCCCCCCcCeeEEEeecCCcChhHHHHHHHHhhccCCCCCChhhhhhhhhHHHHHHhhhccee
Q 018889 7 MTFLIGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFF 85 (349)
Q Consensus 7 lt~~iG~~lGwlv~~-i~~~P~~~~~~vv~~~~~GN~gnLPl~lv~slc~~~~~PFg~~d~c~~~GiaYis~~~~lg~i~ 85 (349)
..+.+.++++|++.| .+|.+++.++....++.++|.|++-+-++.++-.+++.. .+.|+.++.....++
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~~----------~~~~~~~~~~~~~~~ 145 (321)
T TIGR00946 76 GAFSGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGAK----------ILIAALFIDTGAVLM 145 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhcccchh----------hhHHHHHHHhccchh
Confidence 455667888999999 889999999999999999999999999999998764420 245555555444567
Q ss_pred EEeeeccccccchhhhhhhhcCCCCCCCCcccCccccchhhhhcccCCCCCcccchhhccCCCCCCCccccccccccccc
Q 018889 86 IWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHL 165 (349)
Q Consensus 86 ~wt~~y~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (349)
.|++++-+..... +.+ ++
T Consensus 146 ~~~~~~~~~~~~~------~~~------------------~~-------------------------------------- 163 (321)
T TIGR00946 146 TIALGLFLVSEDG------AGG------------------EG-------------------------------------- 163 (321)
T ss_pred HHHHHHHHhcccc------ccc------------------cc--------------------------------------
Confidence 8888864332110 000 00
Q ss_pred chhhhhhhHhHHHHHHHHHH-HhhChhHHHHHHHHHHhchhhhhHhhcCCCCch-hHHHHHHHHhcCcchhHHHHhhhcc
Q 018889 166 QTRKESFWKRSLEFLHQLLE-ELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGN 243 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~-~~~~PPtia~ilg~iVG~VppLr~l~f~~~apL-~~i~~s~~~lG~a~IP~illvLGan 243 (349)
+..+.+++. .+.++ -+-||+++|.++|+++..... ++ .++.++++++|++++|+.++++|..
T Consensus 164 --~~~~~~~~~----~~~~~~~~~nP~iia~i~Gl~~~~~~i----------~lP~~l~~~l~~lg~~~~plaLl~lG~~ 227 (321)
T TIGR00946 164 --SGESTRLML----IFVWKKLIKFPPLWAPLLSVILSLVGF----------KMPGLILKSISILSGATTPMALFSLGLA 227 (321)
T ss_pred --cchhHHHHH----HHHHHHHHhCCChHHHHHHHHHHHHhh----------cCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000111111 12233 346899999999999988752 13 5899999999999999999999998
Q ss_pred cccccccCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHHHHHhccchhhhHH
Q 018889 244 LIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECS 323 (349)
Q Consensus 244 L~~g~~~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~i~ql~~~~e~e~s 323 (349)
|.. ++.+.+.+.+...++.|+++.|++...+.+. ++-|+..+-++.++.++|+|.|...+++.||.++++.+
T Consensus 228 l~~--~~~~~~~~~~~~~~~~klil~P~i~~~~~~~------~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa 299 (321)
T TIGR00946 228 LSP--RKIKLGVRDAILALIVRFLVQPAVMAGISKL------IGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELAS 299 (321)
T ss_pred hCh--hhhccChHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHH
Confidence 864 2333455778888999999999999777653 34478889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018889 324 VLFLWTYLVAALALTGWSMV 343 (349)
Q Consensus 324 ~ilfw~Y~~~~~~lt~w~~~ 343 (349)
...+++.+++.+++++|+.+
T Consensus 300 ~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 300 TAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 4
>COG0679 Predicted permeases [General function prediction only]
Probab=99.73 E-value=2.9e-17 Score=159.68 Aligned_cols=239 Identities=21% Similarity=0.307 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCcCeeEEEeecCCcChhHHHHHHHHhhccCCCCCChhhhhhhhhHHHHHHhhhcce
Q 018889 5 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 84 (349)
Q Consensus 5 ~llt~~iG~~lGwlv~~i~~~P~~~~~~vv~~~~~GN~gnLPl~lv~slc~~~~~PFg~~d~c~~~GiaYis~~~~lg~i 84 (349)
.+.+.+.+.+..++..|++|.+++++.....+.+++|.|++++-+..++=. +.|++|++++++++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G-------------~~gl~~~~i~~~~~~~ 137 (311)
T COG0679 71 LVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFG-------------EKGLAYAVIFLIIGLF 137 (311)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHHcC-------------cchHHHHHHHHHHHHH
Confidence 445555666666677778888888899999999999999999665544433 2469999999999999
Q ss_pred eEEeeeccccccchhhhhhhhcCCCCCCCCcccCccccchhhhhcccCCCCCcccchhhccCCCCCCCcccccccccccc
Q 018889 85 FIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASH 164 (349)
Q Consensus 85 ~~wt~~y~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (349)
++|++++.++.+..+ + .
T Consensus 138 ~~~~~g~~~l~~~~~-------~-------------------~------------------------------------- 154 (311)
T COG0679 138 LMFTLGVILLARSGG-------G-------------------T------------------------------------- 154 (311)
T ss_pred HHHHHHHHHHHHhcC-------C-------------------c-------------------------------------
Confidence 999999986643310 0 0
Q ss_pred cchhhhhhhHhHHHHHHHHHHHhhChhHHHHHHHHHHhchhhhhHhhcCCCCchhHHHHHHHHhcCcchhHHHHhhhccc
Q 018889 165 LQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNL 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~PPtia~ilg~iVG~VppLr~l~f~~~apL~~i~~s~~~lG~a~IP~illvLGanL 244 (349)
+ .+.++ ...+-+.||+.+|.++|+++.... .-++ ..+.++++++|++++|++++++|..|
T Consensus 155 --~--~~~~~-------~~~~~~~nP~i~a~i~g~~~~~~~----i~lP-----~~~~~~~~~l~~a~~pl~li~lG~~L 214 (311)
T COG0679 155 --N--KSLLS-------VLKKLLTNPLIIALILGLLLNLLG----ISLP-----APLDTAVDLLASAASPLALIALGLSL 214 (311)
T ss_pred --h--hHHHH-------HHHHHHhCcHHHHHHHHHHHHHcC----CCCc-----HHHHHHHHHHHHhhhhHHHHHHhhhc
Confidence 0 00111 113455789999999999887654 1111 38999999999999999999999999
Q ss_pred ccccccCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHHHHHhccchhhhHHH
Q 018889 245 IQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSV 324 (349)
Q Consensus 245 ~~g~~~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~i~ql~~~~e~e~s~ 324 (349)
.. .+.++.+.+.+......|+++.|++...+.+.. | + ++....|+.++.++|+|.|...+++.||.+++..+.
T Consensus 215 ~~-~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~---~-l--~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~ 287 (311)
T COG0679 215 AF-LKLKGSKPPIILIALSLKLLLAPLVALLVAKLL---G-L--SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAAS 287 (311)
T ss_pred ch-hhhccccchhHHHHHHHHHHHHHHHHHHHHHHc---C-C--ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHH
Confidence 87 444666778888888889999999999976643 2 3 444458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018889 325 LFLWTYLVAALALTGWSMVYMW 346 (349)
Q Consensus 325 ilfw~Y~~~~~~lt~w~~~~~~ 346 (349)
..+-+-.++.++++.|..++.+
T Consensus 288 ~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 288 TILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999888877665
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.66 E-value=1.7e-15 Score=147.15 Aligned_cols=236 Identities=16% Similarity=0.149 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHHHHH-HhCCCCCCcCeeEEEeecCCcChhHHHHHHHHhhccCCCCCChhhhhhhhhHHHHHHhhhcce
Q 018889 6 AMTFLIGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 84 (349)
Q Consensus 6 llt~~iG~~lGwlv~~-i~~~P~~~~~~vv~~~~~GN~gnLPl~lv~slc~~~~~PFg~~d~c~~~GiaYis~~~~lg~i 84 (349)
.+++++.++++|++.| ..|-+++.++....+++++|.|++-+-++.++-.+++. -|+.|..++. +.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~----------~~~~~a~~~~-~~~~ 140 (314)
T PRK09903 72 LVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVS----------TGLVVAIISI-IVNA 140 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHcCchhh----------hhhHHHHHHH-HHHH
Confidence 4556667778888765 66777777778888889999999999999998765322 1455554433 5677
Q ss_pred eEEeeeccccccchhhhhhhhcCCCCCCCCcccCccccchhhhhcccCCCCCcccchhhccCCCCCCCcccccccccccc
Q 018889 85 FIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASH 164 (349)
Q Consensus 85 ~~wt~~y~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (349)
+.|+++.-+++..+. +++
T Consensus 141 ~~~~~g~~~~~~~~~-----~~~--------------------------------------------------------- 158 (314)
T PRK09903 141 ITIPIGLYLLNPSSG-----ADG--------------------------------------------------------- 158 (314)
T ss_pred HHHHHHHHHHccccc-----ccc---------------------------------------------------------
Confidence 888888655532200 000
Q ss_pred cchhhhhhhHhHHHHHHHHHHHhhChhHHHHHHHHHHhchhhhhHhhcCCCCch-hHHHHHHHHhcCcchhHHHHhhhcc
Q 018889 165 LQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGN 243 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~PPtia~ilg~iVG~VppLr~l~f~~~apL-~~i~~s~~~lG~a~IP~illvLGan 243 (349)
+ +...++.+ .+-+-||+.+|.++|+++-.. +- ++ .++.++++++|++++|+.++.+|+.
T Consensus 159 --~-~~~~~~~l-------~~~~~nP~iia~~~gl~~~l~--------~i--~lP~~i~~~l~~lg~~~~PlaL~~iG~~ 218 (314)
T PRK09903 159 --K-KNSNLSAL-------ISAAKEPVVWAPVLATILVLV--------GV--KIPAAWDPTFNLIAKANSGVAVFAAGLT 218 (314)
T ss_pred --c-cchHHHHH-------HHHHhchHHHHHHHHHHHHHc--------CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001111 233568999999999986542 21 22 5999999999999999999999999
Q ss_pred cccccccCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHHHHHhccchhhhHH
Q 018889 244 LIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECS 323 (349)
Q Consensus 244 L~~g~~~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~i~ql~~~~e~e~s 323 (349)
|++...+. . +.+....+.|+++.|++...+... .+-|+...-++.++.++|+|.+...+++.||.+.+.++
T Consensus 219 L~~~~~~~--~-~~~~~~~~~Kli~~P~i~~~~~~~------~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa 289 (314)
T PRK09903 219 LAAHKFEF--S-AEIAYNTFLKLILMPLALLLVGMA------CHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGT 289 (314)
T ss_pred Hhhccccc--c-HHHHHHHHHHHHHHHHHHHHHHHH------cCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHH
Confidence 98754322 2 344567788999999988665543 23367778899999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018889 324 VLFLWTYLVAALALTGWSMV 343 (349)
Q Consensus 324 ~ilfw~Y~~~~~~lt~w~~~ 343 (349)
...+.+.+++.+++++|+.+
T Consensus 290 ~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 290 ASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999986
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.51 E-value=0.00035 Score=67.51 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=89.4
Q ss_pred hhHHHHhhhcccccc-cccCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHHH
Q 018889 233 IPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM 311 (349)
Q Consensus 233 IP~illvLGanL~~g-~~~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~i 311 (349)
+..+++.+|.+|... .++...+++.+....+.|++++|+++.++.+. .+.||.+...+++..++|+|.+...+
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~------~~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV------FKLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHheeeCCCchHHHHH
Confidence 677889999999742 22333345677788889999999999888653 24689999999999999999999999
Q ss_pred HHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018889 312 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 346 (349)
Q Consensus 312 ~ql~~~~e~e~s~ilfw~Y~~~~~~lt~w~~~~~~ 346 (349)
++++|-..+..+++...+-+++++++++|..+|..
T Consensus 88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998777777888889999999999999988864
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.53 E-value=0.22 Score=44.86 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=74.0
Q ss_pred hhHHHHhhhccccc-ccccCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHHH
Q 018889 233 IPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM 311 (349)
Q Consensus 233 IP~illvLGanL~~-g~~~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~i 311 (349)
+-.+++.+|-++-. -.++..-++|.++...+..++++|+++.++.+. +.+.||-+..-+++..+.|.+...-..
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~-----~~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWL-----LLPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-H-----HTT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 34566777777642 122222245777788889999999999999733 256799999999999999999998888
Q ss_pred HHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018889 312 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 345 (349)
Q Consensus 312 ~ql~~~~e~e~s~ilfw~Y~~~~~~lt~w~~~~~ 345 (349)
+.+-|-..+-.-+.....-+++.+.+++|..+|.
T Consensus 79 t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 79 TYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcccccceeeHHHHHHHHHHHHHHHHHh
Confidence 8886633333334556788999999999988775
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=90.83 E-value=1.1 Score=44.21 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=78.9
Q ss_pred chhHHHHhhhcccccc-cccCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHH
Q 018889 232 TIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGT 310 (349)
Q Consensus 232 ~IP~illvLGanL~~g-~~~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~ 310 (349)
.+-.+++.+|..|..- .+..--+++..+.+.+.-++++|++++++.+. ++-||-..-=+++..|.|...+.-.
T Consensus 43 ~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~------~~l~~~l~~Gl~ll~~~Pggv~S~~ 116 (319)
T COG0385 43 ALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKL------FPLPPELAVGLLLLGCCPGGVASNA 116 (319)
T ss_pred HHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHhHHheeeCCCchhHHH
Confidence 4556788888888642 22233456777888899999999999999874 3357777777888999999999999
Q ss_pred HHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018889 311 MTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 345 (349)
Q Consensus 311 i~ql~~~~e~e~s~ilfw~Y~~~~~~lt~w~~~~~ 345 (349)
+|++.+-.-.-+-..-.-+-+++++..+++..+|+
T Consensus 117 ~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~ 151 (319)
T COG0385 117 MTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLA 151 (319)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99996533222222334677788888888887765
No 9
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=89.29 E-value=2.5 Score=41.57 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhchhhhhHhhcCCCCchhHHH-HHHHHhcCcchhHHHHhhhccccc-ccccCCCCCeeehhhhhHHHHH
Q 018889 191 PTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQ-DSIEILGDGTIPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIA 268 (349)
Q Consensus 191 Ptia~ilg~iVG~VppLr~l~f~~~apL~~i~-~s~~~lG~a~IP~illvLGanL~~-g~~~s~~~~~~i~~i~~~R~il 268 (349)
-+++.++++..|..-|-. | .....+. +... ...|..+.++-|.+|-. ..+..--++|..+.+...=+++
T Consensus 3 fl~~l~~ai~la~~~P~~----g--~~~~~~~~~~~~---~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl 73 (313)
T PF13593_consen 3 FLLGLLLAILLAYLFPAP----G--AAGGVIKPEYVI---KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVL 73 (313)
T ss_pred hHHHHHHHHHHHHHcCcc----c--ccCCccchhhhH---HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 355666666666544332 1 1111221 1222 23388899999988863 2223344567778888999999
Q ss_pred hhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHH-HHHHhcc-chhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 018889 269 LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG-TMTQLFD-VAQEE-CSVLFLWTYLVAALALTGWSMVYM 345 (349)
Q Consensus 269 lP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~-~i~ql~~-~~e~e-~s~ilfw~Y~~~~~~lt~w~~~~~ 345 (349)
.|+++.++...... + .|+-+..=+++..|+||.++.+ .+|++-| +-... +.+. -+-++.++..++|+.+|+
T Consensus 74 ~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~--~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 74 FPLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAV--LSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHH--HHhhhhHhHHHHHHHHHh
Confidence 99999999886542 1 3566888899999999998886 4777644 33222 3332 578888999999998876
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=86.44 E-value=3.7 Score=40.55 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=74.5
Q ss_pred HHHHhhhccccc-ccccCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHHHHH
Q 018889 235 CITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQ 313 (349)
Q Consensus 235 ~illvLGanL~~-g~~~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~i~q 313 (349)
.+++.+|-+|.. -.+...-++|.++...+.-++++|+++.++.+.. .+.+|-+..=+++..|.|.+...-.+|.
T Consensus 51 ~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~ 125 (328)
T TIGR00832 51 LMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQ 125 (328)
T ss_pred HHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 477888888852 2333333567788889999999999999997742 3567889999999999999987777777
Q ss_pred hccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 018889 314 LFDVAQEECSVLF-LWTYLVAALALTGWSMVYMW 346 (349)
Q Consensus 314 l~~~~e~e~s~il-fw~Y~~~~~~lt~w~~~~~~ 346 (349)
+.+ |+...|..+ -..-+++.+.++.+..+|+.
T Consensus 126 lAk-Gnvalsv~lt~~stLl~~~~~P~l~~ll~~ 158 (328)
T TIGR00832 126 LAK-GDPEYTLVLVAVNSLFQVFLYAPLAWLLLG 158 (328)
T ss_pred HcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 333433333 46666677777676665553
No 11
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=61.02 E-value=13 Score=35.84 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcCeeEEEeecCCcC
Q 018889 6 AMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLG 43 (349)
Q Consensus 6 llt~~iG~~lGwlv~~i~~~P~~~~~~vv~~~~~GN~g 43 (349)
++-..+|+++||++.|.+|.+++.+.-+.-.|+.-|.+
T Consensus 202 ~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~ 239 (286)
T TIGR00841 202 ILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ 239 (286)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHH
Confidence 45567899999999999999999999999999999988
No 12
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.16 E-value=14 Score=31.65 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHhCCC
Q 018889 5 VAMTFLIGGILGWIVVKLLRPK 26 (349)
Q Consensus 5 ~llt~~iG~~lGwlv~~i~~~P 26 (349)
+++++++|.++|+++.|++...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999999999998766
No 13
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=47.47 E-value=21 Score=35.40 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCCcCeeEEEeecCCcCh
Q 018889 4 NVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGN 44 (349)
Q Consensus 4 n~llt~~iG~~lGwlv~~i~~~P~~~~~~vv~~~~~GN~gn 44 (349)
+..+.-.+|+.+||...|.++.|++.|.-+.-|++--|+|+
T Consensus 228 ~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l 268 (319)
T COG0385 228 AVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL 268 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH
Confidence 45677789999999999999999999999999999999874
No 14
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=37.43 E-value=22 Score=35.12 Aligned_cols=47 Identities=28% Similarity=0.177 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcCeeEEEeecCCcChhHHHHHHHHhh
Q 018889 6 AMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICH 55 (349)
Q Consensus 6 llt~~iG~~lGwlv~~i~~~P~~~~~~vv~~~~~GN~gnLPl~lv~slc~ 55 (349)
++-+.+|+.+||++.|.+|.+++.|.-+.-+++--|+ .+++..|...
T Consensus 253 ~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~~~ 299 (328)
T TIGR00832 253 LIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAISL 299 (328)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHHHh
Confidence 4668899999999999999999998888888877664 5666666544
No 15
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=36.51 E-value=1.9e+02 Score=24.75 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=41.6
Q ss_pred HHHHHhhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHHHHHhccchhhhHHHHHHHHHHHHHH
Q 018889 264 VRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAAL 335 (349)
Q Consensus 264 ~R~illP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~i~ql~~~~e~e~s~ilfw~Y~~~~~ 335 (349)
+|+.+.-.+.+....+....-. ..+|...=.+++..+.=-.-.+..+.|.|+.+.+.-..++.|.-.....
T Consensus 63 ~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~l~ga~ialigQ~y~~~~~~~~~~~~W~~~~l~~ 133 (145)
T PF09925_consen 63 AKLGLLLALLLLSYVGGFWLWR-RRSPRLAEALLLLGAVLFGALIALIGQIYQTGADPWQLFLLWALLALPL 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchHHHHHHHHHHHHHH
Confidence 4555444444444333333211 3344433333334444477888999999999999988899995544443
No 16
>PRK11677 hypothetical protein; Provisional
Probab=35.20 E-value=35 Score=29.70 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCC
Q 018889 4 NVAMTFLIGGILGWIVVKLLRPK 26 (349)
Q Consensus 4 n~llt~~iG~~lGwlv~~i~~~P 26 (349)
..++++++|.++|+++.|++...
T Consensus 5 ~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhccch
Confidence 35688999999999999986654
No 17
>COG3771 Predicted membrane protein [Function unknown]
Probab=28.08 E-value=23 Score=28.67 Aligned_cols=24 Identities=33% Similarity=0.575 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCc
Q 018889 7 MTFLIGGILGWIVVKLLRPKPHLE 30 (349)
Q Consensus 7 lt~~iG~~lGwlv~~i~~~P~~~~ 30 (349)
.-|++|+++||+++-++...-+++
T Consensus 47 ~lF~~G~~lgwli~g~fy~k~~l~ 70 (97)
T COG3771 47 TLFAAGFALGWLICGLFYLKVRLS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999998887665443
No 18
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.82 E-value=63 Score=23.81 Aligned_cols=22 Identities=32% Similarity=0.819 Sum_probs=16.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhC
Q 018889 3 VNVAMTFLIGGILGWIVVKLLR 24 (349)
Q Consensus 3 vn~llt~~iG~~lGwlv~~i~~ 24 (349)
+-+++++++|.++||++....+
T Consensus 22 l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999998876543
No 19
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=22.99 E-value=1.2e+02 Score=30.03 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcCeeEEEeecCCcChhHHHHHHHHhhccCCCCCChhhhhhhhhHHHHHHhh
Q 018889 8 TFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMA 80 (349)
Q Consensus 8 t~~iG~~lGwlv~~i~~~P~~~~~~vv~~~~~GN~gnLPl~lv~slc~~~~~PFg~~d~c~~~GiaYis~~~~ 80 (349)
=+++|.++||++.|++....-..|++. |==||+++.+++.+ +|=.|+++-.+
T Consensus 81 K~~i~~~~g~~~~~~~g~~Gi~~g~~~--------GlS~LAiiaA~~ns-------------NggLY~aL~~q 132 (314)
T TIGR00793 81 KIAVAWVVAAIASRIIPEDGVEVGFFA--------GLSTLALVAAMDMT-------------NGGLYASIMQQ 132 (314)
T ss_pred HHHHHHHHHHHHHHHcCcCCcccccee--------ccHHHHHHHHHhCC-------------cHHHHHHHHHH
Confidence 478899999999999997644444443 33478888887765 34567766665
No 20
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.19 E-value=93 Score=23.74 Aligned_cols=18 Identities=11% Similarity=0.754 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 018889 4 NVAMTFLIGGILGWIVVK 21 (349)
Q Consensus 4 n~llt~~iG~~lGwlv~~ 21 (349)
.+++++++|.+.||.+.|
T Consensus 2 ~iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIAR 19 (64)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 467788888888887765
Done!