Query 018889
Match_columns 349
No_of_seqs 115 out of 198
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.4 0.00046 1.6E-08 66.6 9.8 137 190-345 19-156 (332)
2 3zux_A Transporter, ASBTNM; tr 31.1 9.1 0.00031 36.4 -0.4 76 6-89 235-310 (332)
3 2knc_A Integrin alpha-IIB; tra 8.7 2.4E+02 0.0081 19.8 2.7 31 248-278 5-35 (54)
4 2kg4_A Growth arrest and DNA-d 7.0 1.5E+02 0.0051 25.5 1.2 42 31-72 52-100 (165)
5 2l8s_A Integrin alpha-1; trans 5.4 4.7E+02 0.016 18.3 2.8 33 251-287 5-37 (54)
6 1e2b_A Enzyme IIB-cellobiose; 5.2 5E+02 0.017 19.9 3.3 30 32-61 5-34 (106)
7 2l2q_A PTS system, cellobiose- 5.0 4.4E+02 0.015 20.1 2.8 31 26-58 2-32 (109)
8 2zjs_E Preprotein translocase 4.5 7.2E+02 0.025 17.0 3.4 21 328-348 28-48 (60)
9 2k1a_A Integrin alpha-IIB; sin 4.1 5.6E+02 0.019 16.8 2.3 34 250-287 5-38 (42)
10 1vf5_F Protein PET M; photosyn 3.9 5.5E+02 0.019 16.3 2.1 16 9-24 16-31 (35)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.44 E-value=0.00046 Score=66.61 Aligned_cols=137 Identities=12% Similarity=-0.051 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHhchhhhhHhhcCCCCchhHHHHHHHHhcCcchhHHHHhhhcccccc-cccCCCCCeeehhhhhHHHHH
Q 018889 190 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIA 268 (349)
Q Consensus 190 PPtia~ilg~iVG~VppLr~l~f~~~apL~~i~~s~~~lG~a~IP~illvLGanL~~g-~~~s~~~~~~i~~i~~~R~il 268 (349)
+-++..+++.++|..-|=.-. .+. . .-...+..+++.+|.++... .+...-++|.+....+.++++
T Consensus 19 ~~~l~i~~~~~lg~~~P~~~~------~~~---~----~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi 85 (332)
T 3zux_A 19 TFSLWAALFAAAAFFAPDTFK------WAG---P----YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI 85 (332)
T ss_dssp THHHHHHHHHHHHHHCGGGTG------GGG---G----GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcchhhh------hhH---H----HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 346666777777765432111 111 1 11246789999999999632 222222456677788899999
Q ss_pred hhhhHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhhHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018889 269 LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 345 (349)
Q Consensus 269 lP~ig~~iv~~~~~~~~i~~Dp~~~fVl~l~~~~P~Ai~~~~i~ql~~~~e~e~s~ilfw~Y~~~~~~lt~w~~~~~ 345 (349)
+|+++.++.+. ++.||.+...+++..|.|++.+...+|++.|-..+-..+....+-+++++.+++|..+|+
T Consensus 86 ~Pll~~~l~~~------~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 86 MPATAWCLSKL------LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHH------TTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------hCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998764 266999999999999999999999999998855555666677899999999999988775
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=31.09 E-value=9.1 Score=36.36 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcCeeEEEeecCCcChhHHHHHHHHhhccCCCCCChhhhhhhhhHHHHHHhhhccee
Q 018889 6 AMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFF 85 (349)
Q Consensus 6 llt~~iG~~lGwlv~~i~~~P~~~~~~vv~~~~~GN~gnLPl~lv~slc~~~~~PFg~~d~c~~~GiaYis~~~~lg~i~ 85 (349)
++-..+|+.+||.+.|.+|.+++.+.-+.-.|+.-|+ .+.+..|...=.+ ++ ...-=...|-.+-+..|+++
T Consensus 235 ~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs---~lai~lA~~~F~~----~p-~~alp~~iy~~~q~i~~~~l 306 (332)
T 3zux_A 235 VLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS---GLAAALAAAHFAA----AP-VVAVPGALFSVWHNISGSLL 306 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH---HHHHHHHHHHSTT----CG-GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH---HHHHHHHHHHcCC----Cc-hHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999998877655555787777 3555444443211 22 23333344555555566665
Q ss_pred EEee
Q 018889 86 IWSY 89 (349)
Q Consensus 86 ~wt~ 89 (349)
.+-|
T Consensus 307 a~~~ 310 (332)
T 3zux_A 307 ATYW 310 (332)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.71 E-value=2.4e+02 Score=19.75 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=22.6
Q ss_pred cccCCCCCeeehhhhhHHHHHhhhhHHHHHH
Q 018889 248 LRSSTLKPLIIIAVVCVRYIALPFIGVWVVK 278 (349)
Q Consensus 248 ~~~s~~~~~~i~~i~~~R~illP~ig~~iv~ 278 (349)
.+...++.+.|+..+++=++++.++-....|
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899888888888887766555543
No 4
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=7.00 E-value=1.5e+02 Score=25.46 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=29.7
Q ss_pred CeeEEEeecCCcC-------hhHHHHHHHHhhccCCCCCChhhhhhhhh
Q 018889 31 GLVIATCASGNLG-------NLLLIIVPAICHEQGSPFGNRDVCSSVGL 72 (349)
Q Consensus 31 ~~vv~~~~~GN~g-------nLPl~lv~slc~~~~~PFg~~d~c~~~Gi 72 (349)
+-+.-|..+.|.- .+|..++.++|.++++|+-..+.-.+.|-
T Consensus 52 ~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~ 100 (165)
T 2kg4_A 52 DNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAE 100 (165)
T ss_dssp TTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHH
T ss_pred CcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 4556666677763 36788999999999999755444555554
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=5.40 E-value=4.7e+02 Score=18.26 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=22.9
Q ss_pred CCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCC
Q 018889 251 STLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP 287 (349)
Q Consensus 251 s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~ 287 (349)
..++.+.|+..+++=++++.++-.... |.|+..
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~Lw----K~GFFK 37 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALW----KIGFFK 37 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHH----HHHHTT
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHH----HcCccc
Confidence 467888888888888887776655544 445554
No 6
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=5.21 E-value=5e+02 Score=19.85 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=22.7
Q ss_pred eeEEEeecCCcChhHHHHHHHHhhccCCCC
Q 018889 32 LVIATCASGNLGNLLLIIVPAICHEQGSPF 61 (349)
Q Consensus 32 ~vv~~~~~GN~gnLPl~lv~slc~~~~~PF 61 (349)
-++.+|+.|-+.|+-.-=+-..+++.|.+.
T Consensus 5 kIll~Cg~G~sTS~l~~k~~~~~~~~gi~~ 34 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVSKMRAQAEKYEVPV 34 (106)
T ss_dssp EEEEECSSSTTTHHHHHHHHHHHHHSCCSE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCCe
Confidence 489999999999976666666677666543
No 7
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=4.97 E-value=4.4e+02 Score=20.07 Aligned_cols=31 Identities=10% Similarity=0.326 Sum_probs=20.3
Q ss_pred CCCCcCeeEEEeecCCcChhHHHHHHHHhhccC
Q 018889 26 KPHLEGLVIATCASGNLGNLLLIIVPAICHEQG 58 (349)
Q Consensus 26 P~~~~~~vv~~~~~GN~gnLPl~lv~slc~~~~ 58 (349)
|+..+ ++.+|+.|-.-++-..=+-..+++.+
T Consensus 2 ~~~mk--IlvvC~~G~~TSll~~kl~~~~~~~g 32 (109)
T 2l2q_A 2 PGSMN--ILLVCGAGMSTSMLVQRIEKYAKSKN 32 (109)
T ss_dssp CCCEE--EEEESSSSCSSCHHHHHHHHHHHHHT
T ss_pred CCceE--EEEECCChHhHHHHHHHHHHHHHHCC
Confidence 44455 89999999999954444444444433
No 8
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=4.46 E-value=7.2e+02 Score=17.02 Aligned_cols=21 Identities=24% Similarity=-0.042 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 018889 328 WTYLVAALALTGWSMVYMWIL 348 (349)
Q Consensus 328 w~Y~~~~~~lt~w~~~~~~l~ 348 (349)
++|....+..++-+.+|+|++
T Consensus 28 ~~~t~vViv~v~i~~~~~~~v 48 (60)
T 2zjs_E 28 VEGTQAILLFTLAFMVILGLY 48 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777653
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=4.07 E-value=5.6e+02 Score=16.83 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=23.2
Q ss_pred cCCCCCeeehhhhhHHHHHhhhhHHHHHHHHHHhCCCC
Q 018889 250 SSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP 287 (349)
Q Consensus 250 ~s~~~~~~i~~i~~~R~illP~ig~~iv~~~~~~~~i~ 287 (349)
...++.+.|+..+++=++++.++ +...+|.|+..
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~li----~~~LwK~GFFk 38 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLTIL----VLAMWKVGFFK 38 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHH----HHHHHHTTTTC
T ss_pred cCCcchHHHHHHHHHHHHHHHHH----HHHHHHcCccc
Confidence 35678888888887777766554 34556778775
No 10
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=3.93 E-value=5.5e+02 Score=16.34 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhC
Q 018889 9 FLIGGILGWIVVKLLR 24 (349)
Q Consensus 9 ~~iG~~lGwlv~~i~~ 24 (349)
+.+|..+|+++-|+-+
T Consensus 16 vLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 16 IFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhheeec
Confidence 5679999999888753
Done!