Query 018889
Match_columns 349
No_of_seqs 115 out of 198
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 07:38:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018889.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018889hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 17.3 45 0.0032 19.5 2.4 29 185-213 5-33 (34)
2 d1c1da1 c.2.1.7 (A:149-349) Ph 4.5 3.3E+02 0.024 21.4 4.1 39 7-45 3-41 (201)
3 d1rzsa_ a.35.1.2 (A:) cro p22 3.6 1.3E+02 0.0093 20.0 0.5 24 61-85 10-34 (61)
4 d2q66a1 a.160.1.1 (A:202-351) 3.6 3.6E+02 0.026 20.6 3.3 17 305-321 36-52 (150)
5 d1q90g_ f.23.26.1 (G:) PetG su 3.3 1.9E+02 0.014 16.2 1.0 11 196-206 6-16 (30)
6 d1q79a1 a.160.1.1 (A:215-364) 3.3 3.9E+02 0.028 20.3 3.3 16 305-320 36-51 (150)
7 d1m8pa3 c.37.1.15 (A:391-573) 3.2 3E+02 0.022 19.3 2.5 23 26-48 1-23 (183)
8 d1ldda_ a.4.5.34 (A:) Anaphase 3.2 2.5E+02 0.018 19.1 1.7 11 326-336 8-18 (74)
9 d1dwka2 d.72.1.1 (A:87-156) Cy 3.1 3.2E+02 0.023 18.3 2.2 10 286-295 2-12 (70)
10 d1q90m_ f.23.25.1 (M:) PetM su 2.9 4.6E+02 0.033 14.7 2.4 14 9-22 16-29 (34)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.33 E-value=45 Score=19.48 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=24.3
Q ss_pred HHhhChhHHHHHHHHHHhchhhhhHhhcC
Q 018889 185 EELLAPPTLAAIVGFIFGAVVWLRNLIIG 213 (349)
Q Consensus 185 ~~~~~PPtia~ilg~iVG~VppLr~l~f~ 213 (349)
|.|||=-+.+.+-|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 45677779999999999999998887764
No 2
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}
Probab=4.53 E-value=3.3e+02 Score=21.40 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcCeeEEEeecCCcChh
Q 018889 7 MTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 45 (349)
Q Consensus 7 lt~~iG~~lGwlv~~i~~~P~~~~~~vv~~~~~GN~gnL 45 (349)
.+|..|...+.-..-=.+-...+++..++--+|||.|.-
T Consensus 3 ~~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~ 41 (201)
T d1c1da1 3 FTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGS 41 (201)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHH
Confidence 456667666654322223344799999999999999864
No 3
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=3.64 E-value=1.3e+02 Score=19.99 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=18.5
Q ss_pred CCC-hhhhhhhhhHHHHHHhhhccee
Q 018889 61 FGN-RDVCSSVGLSYASFSMALGGFF 85 (349)
Q Consensus 61 Fg~-~d~c~~~GiaYis~~~~lg~i~ 85 (349)
||+ ...|...|++..+++|| |..+
T Consensus 10 FG~~~k~A~algis~~AVsqW-Ge~V 34 (61)
T d1rzsa_ 10 FGTQRAVAKALGISDAAVSQW-KEVI 34 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHC-CSBC
T ss_pred hCCHHHHHHHhCCCHHHHHHH-hccC
Confidence 454 66789999999999999 4433
No 4
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.57 E-value=3.6e+02 Score=20.57 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=12.1
Q ss_pred hhHHHHHHHhccchhhh
Q 018889 305 AMNIGTMTQLFDVAQEE 321 (349)
Q Consensus 305 Ai~~~~i~ql~~~~e~e 321 (349)
||.+.-+||+|.+....
T Consensus 36 aILvArvCql~p~a~~~ 52 (150)
T d2q66a1 36 AMLVARICQLYPNACSA 52 (150)
T ss_dssp HHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHhCCCCCHH
Confidence 66778899999754333
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.33 E-value=1.9e+02 Score=16.18 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=7.3
Q ss_pred HHHHHHhchhh
Q 018889 196 IVGFIFGAVVW 206 (349)
Q Consensus 196 ilg~iVG~Vpp 206 (349)
+.|++.|+||-
T Consensus 6 l~GivlGlipi 16 (30)
T d1q90g_ 6 LCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHhhHHH
Confidence 45677777773
No 6
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.30 E-value=3.9e+02 Score=20.31 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=11.9
Q ss_pred hhHHHHHHHhccchhh
Q 018889 305 AMNIGTMTQLFDVAQE 320 (349)
Q Consensus 305 Ai~~~~i~ql~~~~e~ 320 (349)
||...-+||+|.+...
T Consensus 36 aILvArvCql~Pna~~ 51 (150)
T d1q79a1 36 AMLVARTCQLYPNAIA 51 (150)
T ss_dssp HHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHCCCCCH
Confidence 6677888999986543
No 7
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=3.24 E-value=3e+02 Score=19.33 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=19.4
Q ss_pred CCCCcCeeEEEeecCCcChhHHH
Q 018889 26 KPHLEGLVIATCASGNLGNLLLI 48 (349)
Q Consensus 26 P~~~~~~vv~~~~~GN~gnLPl~ 48 (349)
|++.+|++|--+|..-+|-==++
T Consensus 1 ~~~~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 1 PRATQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp CTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 88999999999999888876554
No 8
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.23 E-value=2.5e+02 Score=19.12 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 018889 326 FLWTYLVAALA 336 (349)
Q Consensus 326 lfw~Y~~~~~~ 336 (349)
.||.|+...++
T Consensus 8 ~~w~yI~gMLt 18 (74)
T d1ldda_ 8 RSLPFIEGMLT 18 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 47999998875
No 9
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.14 E-value=3.2e+02 Score=18.34 Aligned_cols=10 Identities=40% Similarity=1.311 Sum_probs=7.4
Q ss_pred CCCCh-HHHHH
Q 018889 286 LPSDP-LYHYV 295 (349)
Q Consensus 286 i~~Dp-~~~fV 295 (349)
+|.|| +|+|=
T Consensus 2 vPtDP~iYR~y 12 (70)
T d1dwka2 2 IPTDPTMYRFY 12 (70)
T ss_dssp SCCSHHHHHHH
T ss_pred CCCCchhhhHH
Confidence 57899 47775
No 10
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.91 E-value=4.6e+02 Score=14.74 Aligned_cols=14 Identities=21% Similarity=0.726 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q 018889 9 FLIGGILGWIVVKL 22 (349)
Q Consensus 9 ~~iG~~lGwlv~~i 22 (349)
+++|...|+++.|.
T Consensus 16 tl~glaigfvllrv 29 (34)
T d1q90m_ 16 TLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheee
Confidence 56777788777664
Done!