BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018892
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/348 (60%), Positives = 263/348 (75%), Gaps = 16/348 (4%)
Query: 2 FVQEKVISIAKPITEEAMTKLFC-STSPTKVAIADLGCSSGPNTLLVASELIKVVNKICD 60
F+Q +VISI KPITE A+T L+ T T++AIADLGCSSGPN L +ELIK V ++
Sbjct: 23 FIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRK 82
Query: 61 KLGSQ-LPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFY 119
K+G + PE+Q+FLNDLPGNDFN IFRSL + G CF GVPGSFY
Sbjct: 83 KMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV-----------DGVCFINGVPGSFY 131
Query: 120 GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLF 179
GRLFPRN++H HSSYSL WLSQVP G+ESNKGNI+MA+T P VL AYY+QFQ D +LF
Sbjct: 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALF 191
Query: 180 LKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFN 239
L+CR++E+V GRMVLT LGR+S+D +S ECC IW+LLA ALN MVSEGLIEEEK++ FN
Sbjct: 192 LRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFN 251
Query: 240 IPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFNDGGYNVANCM 299
IPQYTPSP E+++E++KEGSF IDH+E SE+ W++ K + + + GYNVA CM
Sbjct: 252 IPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCT---KDGDGGGSVEEEGYNVARCM 308
Query: 300 RAVAEPLLVSQFGEAIIDELFKRYREIVADRMSKEKTKFINVTVSLTK 347
RAVAEPLL+ FGEAII+++F RY+ ++ +RMSKEKTKFINV VSL +
Sbjct: 309 RAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIR 356
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 248 bits (632), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 213/352 (60%), Gaps = 25/352 (7%)
Query: 7 VISIAKPITEEAMTKLFCSTSPTK---VAIADLGCSSGPNTLLVASELIKVVNKICDKLG 63
V++ KP+ E+ + +L + P + +ADLGC+SGPNTLL ++++ ++K+ +
Sbjct: 28 VLAKVKPVLEQCVRELLRANLPNINKCIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKK 87
Query: 64 SQL--PEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGR 121
++L P Q+FLNDL NDFN++F+ L SF + L K+ G G+ C +PGSFY R
Sbjct: 88 NELERPTIQIFLNDLFPNDFNSVFKLLPSFYRKLEKENGRKIGS---CLIGAMPGSFYSR 144
Query: 122 LFPRNSVHLFHSSYSLQWLSQVPDGL------ESNKGNIFMASTSPPCVLTAYYEQFQRD 175
LFP S+H HS Y LQWLSQVP GL +NKG+I+ + S V AY +QF +D
Sbjct: 145 LFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNKGSIYSSKASRLPVQKAYLDQFTKD 204
Query: 176 FSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKV 235
F+ FL+ SEEL + GRM+LT + + + + +LL A+N++V EG +EEEK+
Sbjct: 205 FTTFLRIHSEELFSHGRMLLTCICKGVELDARNAI----DLLEMAINDLVVEGHLEEEKL 260
Query: 236 NCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFNDGGYNV 295
+ FN+P Y PS E+K V +EGSF I +LE +V ++A GF ++D + V
Sbjct: 261 DSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDA---GF----SIDDEHIKAEYV 313
Query: 296 ANCMRAVAEPLLVSQFGEAIIDELFKRYREIVADRMSKEKTKFINVTVSLTK 347
A+ +RAV EP+L S FGEAII ++F R+ + A + K + N+ +SL K
Sbjct: 314 ASSVRAVYEPILASHFGEAIIPDIFHRFAKHAAKVLPLGKGFYNNLIISLAK 365
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/359 (37%), Positives = 207/359 (57%), Gaps = 36/359 (10%)
Query: 12 KPITEEAMTKLFCSTSPTK---VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQL-- 66
KP+ E+ + +L + P + DLGC+SGPNT ++++ ++K+ + ++L
Sbjct: 32 KPVLEQCIQELLRANLPNINKCFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELER 91
Query: 67 PEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRN 126
P Q+FLNDL NDFN++F+ L SF + L K+ G G+ C +PGSFY RLFP
Sbjct: 92 PTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGS---CLIGAMPGSFYSRLFPEE 148
Query: 127 SVHLFHSSYSLQWLSQVPDGLES------NKGNIFMASTSPPCVLTAYYEQFQRDFSLFL 180
S+H HS Y L WLSQVP GL + NKG I+ + S P + AY +QF +DF+ FL
Sbjct: 149 SMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL 208
Query: 181 KCRSEELVAEGRMVLTFLGRKSQ--DPSSKECCYIWELLATALNNMVSEGLIEEEKVNCF 238
+ SEEL++ GRM+LTF+ ++ + P+S +LL ++N++V EG +EEEK++ F
Sbjct: 209 RIHSEELISRGRMLLTFICKEDEFDHPNS------MDLLEMSINDLVIEGHLEEEKLDSF 262
Query: 239 NIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNA-YQNGFKFNEAVDAFNDG------ 291
N+P Y PS E+K V +EGSF I +LE +NA Y GF ++ +
Sbjct: 263 NVPIYAPSTEEVKRIVEEEGSFEILYLET----FNAPYDAGFSIDDDYQGRSHSPVSCDE 318
Query: 292 ---GYNVANCMRAVAEPLLVSQFGEAIIDELFKRYREIVADRMSKEKTKFINVTVSLTK 347
+VA+ +R++ EP+L S FGEAI+ +L R + A + K + +V +SL K
Sbjct: 319 HARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNAAKVLRSGKGFYDSVIISLAK 377
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 175/341 (51%), Gaps = 27/341 (7%)
Query: 21 KLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGND 80
L S SP DLGCSSG NT+ + ++K ++K D G PEF F +DLP ND
Sbjct: 44 HLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSND 103
Query: 81 FNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL 140
FNT+F+ L + A+ F GVPGSFY RLFP ++ FHS++SL WL
Sbjct: 104 FNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWL 163
Query: 141 SQVPDGLES------NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMV 194
SQVP+ + N+G +F+ TAY QFQ D + FL+ R+ E+ G M
Sbjct: 164 SQVPESVTDRRSAAYNRGRVFIHGAGEKTT-TAYKRQFQADLAEFLRARAAEVKRGGAMF 222
Query: 195 LTFLGRKSQDPSSKECCYIWELLAT----ALNNMVSEGLIEEEKVNCFNIPQYTPSPAEI 250
L LGR S DP+ + + L T A +++V EGL+ EK + FNIP Y PS +
Sbjct: 223 LVCLGRTSVDPTDQGGAGL--LFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDF 280
Query: 251 KSEVIKEGSFTIDHLEVSEVNWNAYQNG--FKFNEAVDAFNDGGYNVANCMRAVAEPLLV 308
K V GSF ID L V Y+ G NE DA ++ G A+ R+VA L+
Sbjct: 281 KEVVDANGSFAIDKLVV-------YKGGSPLVVNEPDDA-SEVGRAFASSCRSVAGVLVE 332
Query: 309 SQFGEAIIDELFKRYREIVADRMSKE---KTKFINVTVSLT 346
+ GE + ++LF R E A +K+ +F ++ SL+
Sbjct: 333 AHIGEELSNKLFSRV-ESRATSHAKDVLVNLQFFHIVASLS 372
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 117 SFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDF 176
S YG FP + L H Y + W+S G ++N G+ F + + P L + F +
Sbjct: 89 SIYGETFPDENFKLKH--YGIGWVSMANAGPDTN-GSQFFITLTKPTWLDGKHVVFGKVI 145
Query: 177 SLFLKCRSEELVA 189
S EL A
Sbjct: 146 DGMTVVHSIELQA 158
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 117 SFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSP 161
S YG FP + L H Y + W+S G ++N F+ T P
Sbjct: 81 SIYGETFPDENFKLKH--YGIGWVSMANAGPDTNGSQFFITLTKP 123
>pdb|4BBQ|A Chain A, Crystal Structure Of The Cxxc And Phd Domain Of Human
Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
pdb|4BBQ|B Chain B, Crystal Structure Of The Cxxc And Phd Domain Of Human
Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
Length = 117
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 209 ECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQ 242
ECC E++ M EGL+ EE NC+ P+
Sbjct: 77 ECCICNEIVHPGCLQMDGEGLLNEELPNCWECPK 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,877,833
Number of Sequences: 62578
Number of extensions: 398709
Number of successful extensions: 1092
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 9
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)