Query 018892
Match_columns 349
No_of_seqs 140 out of 496
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03492 Methyltransf_7: SAM d 100.0 1.2E-99 3E-104 739.8 31.4 322 15-348 1-334 (334)
2 PLN02668 indole-3-acetate carb 100.0 2E-97 4E-102 729.9 36.8 337 3-347 36-385 (386)
3 PRK01683 trans-aconitate 2-met 99.1 2.5E-08 5.5E-13 93.5 21.1 220 29-348 31-257 (258)
4 PRK14103 trans-aconitate 2-met 99.1 2E-08 4.3E-13 94.4 19.6 202 29-331 29-232 (255)
5 TIGR02072 BioC biotin biosynth 98.6 5.3E-07 1.2E-11 82.3 12.0 142 29-266 34-175 (240)
6 TIGR00740 methyltransferase, p 98.5 2E-06 4.4E-11 79.9 14.1 165 29-261 53-221 (239)
7 TIGR02752 MenG_heptapren 2-hep 98.5 8.5E-07 1.8E-11 81.6 10.6 175 30-269 46-220 (231)
8 PTZ00098 phosphoethanolamine N 98.5 8.2E-06 1.8E-10 77.4 16.8 195 29-328 52-246 (263)
9 PRK08317 hypothetical protein; 98.4 3.5E-05 7.7E-10 70.1 18.8 222 29-349 19-241 (241)
10 PRK15068 tRNA mo(5)U34 methylt 98.4 3.4E-06 7.3E-11 82.5 12.1 152 31-268 124-275 (322)
11 PRK10258 biotin biosynthesis p 98.4 3.2E-05 7E-10 72.2 17.7 99 116-271 92-190 (251)
12 PLN02336 phosphoethanolamine N 98.3 3.7E-05 8E-10 78.6 19.4 193 29-330 266-460 (475)
13 PLN02244 tocopherol O-methyltr 98.2 4.4E-05 9.4E-10 75.2 16.5 103 116-266 175-277 (340)
14 COG2226 UbiE Methylase involve 98.2 1.4E-05 3E-10 75.0 11.1 167 29-264 51-221 (238)
15 PF13489 Methyltransf_23: Meth 98.1 2.3E-05 4.9E-10 67.1 10.5 90 120-264 71-160 (161)
16 PRK11036 putative S-adenosyl-L 98.1 0.0001 2.2E-09 69.3 15.7 102 123-269 108-209 (255)
17 PLN02233 ubiquinone biosynthes 98.1 7.2E-05 1.6E-09 70.9 14.6 103 122-266 140-247 (261)
18 TIGR00452 methyltransferase, p 98.1 7.3E-05 1.6E-09 73.0 14.9 93 121-268 182-274 (314)
19 PRK15451 tRNA cmo(5)U34 methyl 98.1 5.5E-05 1.2E-09 71.0 13.5 165 29-261 56-224 (247)
20 PRK00216 ubiE ubiquinone/menaq 98.1 4.1E-05 8.9E-10 70.0 12.2 172 30-269 52-227 (239)
21 PLN02396 hexaprenyldihydroxybe 97.9 0.00017 3.7E-09 70.7 12.9 103 116-268 187-290 (322)
22 smart00828 PKS_MT Methyltransf 97.9 0.00085 1.8E-08 61.3 16.2 84 122-269 63-146 (224)
23 PLN02490 MPBQ/MSBQ methyltrans 97.8 0.00032 6.8E-09 69.3 13.8 149 29-272 113-261 (340)
24 COG4106 Tam Trans-aconitate me 97.8 0.0003 6.5E-09 64.9 12.5 165 120-348 85-256 (257)
25 PRK11705 cyclopropane fatty ac 97.8 0.0013 2.9E-08 65.8 17.4 141 125-342 226-369 (383)
26 PRK06202 hypothetical protein; 97.8 0.0005 1.1E-08 63.6 13.3 29 242-272 199-227 (232)
27 TIGR01934 MenG_MenH_UbiE ubiqu 97.8 0.00062 1.3E-08 61.5 13.5 167 29-269 39-212 (223)
28 PF01209 Ubie_methyltran: ubiE 97.7 2.1E-05 4.5E-10 73.6 3.5 168 29-266 47-219 (233)
29 PF12847 Methyltransf_18: Meth 97.7 0.00032 6.9E-09 56.7 9.1 40 128-197 71-111 (112)
30 PF08241 Methyltransf_11: Meth 97.7 0.00014 3E-09 56.3 6.6 50 113-195 46-95 (95)
31 PF02353 CMAS: Mycolic acid cy 97.7 0.0074 1.6E-07 57.8 19.7 75 174-268 143-218 (273)
32 PRK12335 tellurite resistance 97.6 0.00077 1.7E-08 64.6 12.4 76 125-266 182-258 (287)
33 PRK11207 tellurite resistance 97.5 0.0012 2.6E-08 59.8 11.8 138 30-266 31-169 (197)
34 PF13847 Methyltransf_31: Meth 97.5 0.001 2.3E-08 57.2 10.4 107 29-199 3-112 (152)
35 TIGR00477 tehB tellurite resis 97.5 0.0011 2.3E-08 60.0 10.7 138 30-266 31-168 (195)
36 smart00138 MeTrc Methyltransfe 97.3 0.0024 5.2E-08 60.8 11.4 44 122-196 198-241 (264)
37 TIGR01983 UbiG ubiquinone bios 97.3 0.0054 1.2E-07 55.9 13.0 95 125-268 110-204 (224)
38 TIGR02716 C20_methyl_CrtF C-20 97.3 0.0058 1.3E-07 58.9 13.8 154 28-263 148-302 (306)
39 PRK07580 Mg-protoporphyrin IX 97.3 0.011 2.4E-07 53.9 15.1 29 240-269 188-216 (230)
40 PRK11873 arsM arsenite S-adeno 97.3 0.0053 1.1E-07 58.1 13.1 97 114-266 133-229 (272)
41 PRK06922 hypothetical protein; 97.2 0.0014 3.1E-08 69.4 9.3 117 30-196 419-536 (677)
42 TIGR02021 BchM-ChlM magnesium 97.2 0.029 6.2E-07 51.3 16.5 30 239-269 179-208 (219)
43 TIGR02081 metW methionine bios 97.1 0.0054 1.2E-07 55.1 11.2 27 242-269 143-169 (194)
44 PRK00121 trmB tRNA (guanine-N( 97.1 0.0014 3.1E-08 59.6 7.1 135 29-232 40-177 (202)
45 PLN02232 ubiquinone biosynthes 97.1 0.0026 5.7E-08 55.7 8.2 108 116-265 33-145 (160)
46 COG2230 Cfa Cyclopropane fatty 97.0 0.12 2.7E-06 49.7 19.9 72 173-268 152-224 (283)
47 KOG2940 Predicted methyltransf 97.0 0.0011 2.5E-08 61.7 5.5 92 123-265 133-225 (325)
48 PRK05134 bifunctional 3-demeth 96.9 0.011 2.4E-07 54.3 11.4 95 124-267 111-205 (233)
49 PF03848 TehB: Tellurite resis 96.9 0.0017 3.6E-08 59.2 5.7 119 8-197 15-133 (192)
50 TIGR03438 probable methyltrans 96.9 0.0069 1.5E-07 58.6 10.2 130 13-202 48-182 (301)
51 KOG1540 Ubiquinone biosynthesi 96.9 0.0073 1.6E-07 57.2 9.7 176 28-264 99-278 (296)
52 PF08242 Methyltransf_12: Meth 96.9 0.00099 2.1E-08 52.9 3.5 99 34-193 1-99 (99)
53 PLN02336 phosphoethanolamine N 96.9 0.0037 7.9E-08 64.0 8.4 43 123-196 99-141 (475)
54 KOG3010 Methyltransferase [Gen 96.8 0.028 6.1E-07 52.8 12.8 45 124-202 97-141 (261)
55 TIGR00138 gidB 16S rRNA methyl 96.8 0.0048 1E-07 55.4 7.4 45 184-241 129-173 (181)
56 PRK11188 rrmJ 23S rRNA methylt 96.6 0.018 4E-07 52.8 10.2 55 123-199 113-167 (209)
57 PF08003 Methyltransf_9: Prote 96.3 0.046 1E-06 53.1 11.3 146 31-262 117-262 (315)
58 PRK09489 rsmC 16S ribosomal RN 96.2 0.025 5.5E-07 55.9 9.3 105 32-197 199-303 (342)
59 PRK05785 hypothetical protein; 96.2 0.048 1E-06 50.6 10.6 27 116-142 99-125 (226)
60 cd02440 AdoMet_MTases S-adenos 96.2 0.031 6.8E-07 42.4 7.8 102 32-196 1-103 (107)
61 PLN02585 magnesium protoporphy 96.1 0.41 8.8E-06 46.9 16.8 27 242-269 275-301 (315)
62 PRK15001 SAM-dependent 23S rib 96.0 0.051 1.1E-06 54.5 10.4 111 31-197 230-340 (378)
63 PRK11088 rrmA 23S rRNA methylt 95.9 0.052 1.1E-06 51.5 9.7 20 29-48 85-104 (272)
64 PF05401 NodS: Nodulation prot 95.9 0.045 9.7E-07 50.1 8.7 93 28-197 42-146 (201)
65 KOG2361 Predicted methyltransf 95.9 0.14 3.1E-06 48.2 11.9 185 11-268 53-238 (264)
66 TIGR03534 RF_mod_PrmC protein- 95.8 0.04 8.7E-07 50.9 8.1 131 29-197 87-217 (251)
67 PRK00312 pcm protein-L-isoaspa 95.7 0.063 1.4E-06 48.8 9.1 18 29-46 78-95 (212)
68 TIGR02469 CbiT precorrin-6Y C5 95.7 0.017 3.7E-07 46.9 4.8 21 177-197 102-122 (124)
69 TIGR00537 hemK_rel_arch HemK-r 95.7 0.16 3.4E-06 45.0 11.2 73 114-200 71-143 (179)
70 TIGR03533 L3_gln_methyl protei 95.6 0.093 2E-06 50.4 10.2 140 13-198 107-252 (284)
71 PF13649 Methyltransf_25: Meth 95.6 0.013 2.7E-07 46.9 3.5 100 33-191 1-101 (101)
72 PF05175 MTS: Methyltransferas 95.4 0.18 3.9E-06 44.4 10.4 122 11-197 19-140 (170)
73 PRK13255 thiopurine S-methyltr 95.3 0.71 1.5E-05 42.7 14.5 36 11-49 22-57 (218)
74 COG4123 Predicted O-methyltran 95.2 0.12 2.5E-06 49.0 9.1 114 28-197 43-170 (248)
75 PRK13942 protein-L-isoaspartat 95.2 0.11 2.4E-06 47.6 8.8 20 29-48 76-95 (212)
76 PF06080 DUF938: Protein of un 95.2 0.74 1.6E-05 42.4 14.0 178 9-264 8-189 (204)
77 PRK00107 gidB 16S rRNA methylt 95.1 0.22 4.8E-06 45.0 10.2 22 176-197 124-145 (187)
78 PRK14121 tRNA (guanine-N(7)-)- 95.1 0.075 1.6E-06 53.5 7.8 112 31-197 124-235 (390)
79 PRK08287 cobalt-precorrin-6Y C 94.9 0.33 7.1E-06 43.2 10.8 20 29-48 31-50 (187)
80 COG2242 CobL Precorrin-6B meth 94.9 0.38 8.2E-06 43.6 10.9 37 12-48 15-53 (187)
81 PRK13944 protein-L-isoaspartat 94.8 0.068 1.5E-06 48.7 6.2 20 30-49 73-92 (205)
82 PTZ00146 fibrillarin; Provisio 94.7 0.51 1.1E-05 45.8 12.2 20 30-49 133-152 (293)
83 PRK14967 putative methyltransf 94.6 0.37 8E-06 44.3 10.6 115 114-258 89-204 (223)
84 TIGR00091 tRNA (guanine-N(7)-) 94.6 0.44 9.5E-06 42.9 10.9 113 30-197 17-132 (194)
85 PF07021 MetW: Methionine bios 94.4 0.36 7.8E-06 44.0 9.7 96 123-272 71-172 (193)
86 PRK11805 N5-glutamine S-adenos 94.3 0.37 8E-06 46.9 10.3 23 176-198 242-264 (307)
87 TIGR00080 pimt protein-L-isoas 94.2 0.29 6.2E-06 44.7 9.0 20 29-48 77-96 (215)
88 TIGR03840 TMPT_Se_Te thiopurin 94.2 0.39 8.4E-06 44.3 9.8 60 177-271 132-191 (213)
89 PRK09328 N5-glutamine S-adenos 94.1 0.24 5.3E-06 46.5 8.4 24 174-197 215-238 (275)
90 TIGR03587 Pse_Me-ase pseudamin 93.8 0.2 4.3E-06 45.8 7.1 25 116-141 95-119 (204)
91 PF05148 Methyltransf_8: Hypot 93.8 0.058 1.3E-06 49.8 3.5 41 123-197 118-158 (219)
92 PF00891 Methyltransf_2: O-met 93.6 0.61 1.3E-05 43.1 9.9 103 29-202 100-204 (241)
93 PRK04266 fibrillarin; Provisio 93.5 0.96 2.1E-05 42.1 11.1 19 30-48 73-91 (226)
94 TIGR00438 rrmJ cell division p 93.4 0.23 5E-06 44.3 6.6 24 174-197 123-146 (188)
95 PF03291 Pox_MCEL: mRNA cappin 93.4 0.44 9.6E-06 47.0 9.2 45 126-199 144-188 (331)
96 PRK01544 bifunctional N5-gluta 93.3 0.53 1.1E-05 49.0 9.9 130 30-197 139-269 (506)
97 PRK14966 unknown domain/N5-glu 93.2 0.55 1.2E-05 47.8 9.6 22 176-197 360-381 (423)
98 PF13659 Methyltransf_26: Meth 92.9 0.47 1E-05 38.2 7.2 24 175-198 93-116 (117)
99 PRK14968 putative methyltransf 92.9 2.3 4.9E-05 37.1 12.1 23 175-197 126-148 (188)
100 PRK14902 16S rRNA methyltransf 92.6 1 2.2E-05 45.9 10.8 124 31-198 252-380 (444)
101 PRK10901 16S rRNA methyltransf 92.2 1 2.2E-05 45.7 10.1 28 172-199 347-374 (427)
102 PRK14903 16S rRNA methyltransf 92.1 0.78 1.7E-05 46.8 9.0 129 31-201 239-370 (431)
103 TIGR00536 hemK_fam HemK family 91.8 1.4 3E-05 42.2 10.0 25 174-198 221-245 (284)
104 TIGR00563 rsmB ribosomal RNA s 90.7 1.8 3.8E-05 44.0 10.1 129 30-201 239-372 (426)
105 PHA03411 putative methyltransf 89.5 2 4.3E-05 41.4 8.7 115 31-200 66-186 (279)
106 KOG3045 Predicted RNA methylas 89.0 1.4 3.1E-05 42.2 7.1 24 175-198 242-265 (325)
107 TIGR00406 prmA ribosomal prote 88.6 0.47 1E-05 45.5 3.8 17 30-46 160-176 (288)
108 PRK14904 16S rRNA methyltransf 88.5 3.5 7.6E-05 42.1 10.3 125 31-201 252-381 (445)
109 PRK00811 spermidine synthase; 88.2 1.9 4.2E-05 41.3 7.7 21 27-47 74-94 (283)
110 KOG4300 Predicted methyltransf 87.7 5.2 0.00011 37.3 9.7 109 108-271 128-236 (252)
111 PF03141 Methyltransf_29: Puta 85.6 0.96 2.1E-05 46.8 4.2 46 122-200 176-222 (506)
112 KOG2904 Predicted methyltransf 84.4 2.6 5.5E-05 40.8 6.2 27 176-202 264-290 (328)
113 PRK14901 16S rRNA methyltransf 83.7 12 0.00026 38.1 11.2 28 172-199 359-386 (434)
114 PLN03075 nicotianamine synthas 83.6 7.4 0.00016 37.9 9.2 20 29-48 123-142 (296)
115 PF05891 Methyltransf_PK: AdoM 83.2 2.3 4.9E-05 39.6 5.2 94 107-267 106-201 (218)
116 TIGR01177 conserved hypothetic 82.9 10 0.00022 37.0 10.0 26 176-201 273-298 (329)
117 TIGR00446 nop2p NOL1/NOP2/sun 81.3 12 0.00025 35.5 9.5 29 172-200 174-202 (264)
118 PF01234 NNMT_PNMT_TEMT: NNMT/ 81.3 3.8 8.3E-05 39.0 6.1 81 127-266 158-238 (256)
119 TIGR00417 speE spermidine synt 80.4 8.2 0.00018 36.6 8.1 19 178-196 167-185 (270)
120 PRK15128 23S rRNA m(5)C1962 me 80.3 41 0.0009 34.0 13.5 26 172-197 314-339 (396)
121 KOG1541 Predicted protein carb 79.9 3.5 7.7E-05 38.7 5.2 56 122-199 107-162 (270)
122 PF01135 PCMT: Protein-L-isoas 79.1 6.7 0.00014 36.1 6.8 35 12-48 57-91 (209)
123 COG2518 Pcm Protein-L-isoaspar 79.0 9.5 0.00021 35.3 7.7 49 128-198 122-170 (209)
124 PF02390 Methyltransf_4: Putat 75.0 11 0.00024 34.2 7.0 113 32-197 20-133 (195)
125 PRK04457 spermidine synthase; 74.3 11 0.00024 35.7 7.1 24 178-201 158-181 (262)
126 PRK01544 bifunctional N5-gluta 74.2 14 0.0003 38.6 8.4 138 4-197 325-462 (506)
127 PRK03612 spermidine synthase; 72.6 17 0.00036 38.1 8.5 19 28-46 296-314 (521)
128 PHA03412 putative methyltransf 69.8 1.7 3.7E-05 41.0 0.5 56 30-89 50-119 (241)
129 PF10294 Methyltransf_16: Puta 69.6 26 0.00056 30.9 7.9 35 29-78 45-79 (173)
130 KOG1331 Predicted methyltransf 69.1 5.7 0.00012 38.4 3.8 56 121-206 97-152 (293)
131 TIGR03439 methyl_EasF probable 66.7 86 0.0019 30.8 11.6 38 13-51 61-98 (319)
132 KOG1270 Methyltransferases [Co 65.6 11 0.00024 36.2 4.9 76 174-265 172-247 (282)
133 TIGR00478 tly hemolysin TlyA f 63.8 8.3 0.00018 36.0 3.7 39 9-49 57-95 (228)
134 PRK13256 thiopurine S-methyltr 63.8 1E+02 0.0022 28.8 10.9 36 11-49 28-63 (226)
135 KOG3178 Hydroxyindole-O-methyl 62.5 1.1E+02 0.0024 30.4 11.4 104 111-266 223-329 (342)
136 COG2813 RsmC 16S RNA G1207 met 61.4 11 0.00024 36.8 4.2 29 32-75 161-189 (300)
137 PLN02366 spermidine synthase 61.2 41 0.00088 32.8 8.2 18 27-44 89-106 (308)
138 PRK11783 rlmL 23S rRNA m(2)G24 61.0 1E+02 0.0022 33.5 12.0 19 31-49 540-558 (702)
139 PF01728 FtsJ: FtsJ-like methy 60.8 8.2 0.00018 33.9 3.0 53 13-79 7-59 (181)
140 KOG1499 Protein arginine N-met 59.8 35 0.00075 34.0 7.4 105 29-194 60-164 (346)
141 PF13679 Methyltransf_32: Meth 59.3 16 0.00035 30.9 4.5 40 8-49 6-45 (141)
142 PRK00274 ksgA 16S ribosomal RN 59.3 15 0.00032 34.9 4.7 48 30-82 43-102 (272)
143 smart00650 rADc Ribosomal RNA 58.4 17 0.00036 31.7 4.5 20 31-50 15-34 (169)
144 COG2263 Predicted RNA methylas 55.9 6.7 0.00015 35.9 1.6 19 29-47 45-63 (198)
145 PF05185 PRMT5: PRMT5 arginine 54.7 27 0.00058 36.0 5.9 37 15-51 170-208 (448)
146 cd08788 CARD_NOD2_2_CARD15 Cas 54.1 14 0.00031 28.9 2.9 42 213-255 12-53 (81)
147 PF02268 TFIIA_gamma_N: Transc 51.3 15 0.00032 26.1 2.4 22 213-234 11-32 (49)
148 COG2264 PrmA Ribosomal protein 50.4 15 0.00033 35.8 3.1 19 29-47 162-180 (300)
149 PF06859 Bin3: Bicoid-interact 50.0 24 0.00053 29.3 3.9 25 173-197 20-44 (110)
150 PRK10909 rsmD 16S rRNA m(2)G96 49.2 16 0.00035 33.2 3.0 17 31-47 55-71 (199)
151 COG5124 Protein predicted to b 48.7 13 0.00027 33.6 2.1 36 212-247 40-75 (209)
152 KOG1269 SAM-dependent methyltr 48.7 86 0.0019 31.4 8.3 54 114-200 165-218 (364)
153 PF03962 Mnd1: Mnd1 family; I 48.4 12 0.00025 34.0 1.9 34 215-248 30-63 (188)
154 PF06325 PrmA: Ribosomal prote 48.2 22 0.00047 34.6 3.9 17 31-47 163-179 (295)
155 TIGR03704 PrmC_rel_meth putati 47.8 19 0.0004 33.9 3.3 22 176-197 195-216 (251)
156 PF05724 TPMT: Thiopurine S-me 47.0 92 0.002 28.7 7.7 90 113-269 101-192 (218)
157 PRK07402 precorrin-6B methylas 45.8 13 0.00027 33.2 1.7 18 30-47 41-58 (196)
158 PRK00517 prmA ribosomal protei 44.9 9.8 0.00021 35.5 0.9 17 29-45 119-135 (250)
159 PRK11933 yebU rRNA (cytosine-C 44.6 1.1E+02 0.0024 31.8 8.6 127 30-199 114-244 (470)
160 PRK14896 ksgA 16S ribosomal RN 44.1 35 0.00076 32.0 4.5 21 30-50 30-50 (258)
161 KOG1975 mRNA cap methyltransfe 44.0 37 0.00079 33.8 4.6 58 114-200 178-240 (389)
162 KOG1541 Predicted protein carb 43.5 26 0.00056 33.1 3.4 16 28-43 49-64 (270)
163 PRK10079 phosphonate metabolis 42.3 33 0.00071 31.7 4.0 54 169-236 14-71 (241)
164 PF09851 SHOCT: Short C-termin 41.9 22 0.00047 22.6 1.9 18 219-236 6-23 (31)
165 COG2521 Predicted archaeal met 40.4 45 0.00098 31.8 4.5 54 114-197 190-245 (287)
166 PTZ00338 dimethyladenosine tra 39.7 42 0.00091 32.5 4.4 51 30-81 37-99 (294)
167 PF02167 Cytochrom_C1: Cytochr 39.5 31 0.00068 32.1 3.3 49 114-182 133-181 (219)
168 PRK11760 putative 23S rRNA C24 39.3 34 0.00073 34.2 3.7 40 9-48 186-230 (357)
169 PF09243 Rsm22: Mitochondrial 38.9 2.4E+02 0.0052 26.8 9.4 127 29-198 33-168 (274)
170 COG2890 HemK Methylase of poly 38.8 23 0.0005 34.0 2.5 30 32-76 113-142 (280)
171 COG1189 Predicted rRNA methyla 38.7 32 0.0007 32.5 3.3 37 11-49 63-99 (245)
172 PRK10611 chemotaxis methyltran 37.2 41 0.0009 32.5 3.9 43 29-78 115-157 (287)
173 PRK02289 4-oxalocrotonate taut 36.9 42 0.00091 24.2 3.0 40 41-81 11-51 (60)
174 PRK04148 hypothetical protein; 36.3 71 0.0015 27.5 4.8 45 29-82 16-73 (134)
175 PF08123 DOT1: Histone methyla 36.2 71 0.0015 29.3 5.1 54 30-83 43-117 (205)
176 PRK00377 cbiT cobalt-precorrin 35.7 22 0.00048 31.8 1.7 19 29-47 40-58 (198)
177 cd00491 4Oxalocrotonate_Tautom 35.5 77 0.0017 22.1 4.2 43 39-82 8-51 (58)
178 PF14904 FAM86: Family of unkn 35.4 40 0.00087 27.6 2.9 31 296-326 67-99 (100)
179 PF12147 Methyltransf_20: Puta 34.3 82 0.0018 30.9 5.3 59 180-261 232-292 (311)
180 TIGR00730 conserved hypothetic 34.1 58 0.0013 29.1 4.1 41 213-256 137-177 (178)
181 KOG0451 Predicted 2-oxoglutara 34.0 88 0.0019 33.3 5.8 69 154-238 390-475 (913)
182 PRK03522 rumB 23S rRNA methylu 33.7 46 0.001 32.2 3.7 20 30-49 174-193 (315)
183 PHA02734 coat protein; Provisi 33.6 28 0.00061 29.6 1.8 39 42-80 49-90 (149)
184 TIGR02404 trehalos_R_Bsub treh 32.9 53 0.0011 30.0 3.8 55 171-238 4-63 (233)
185 PRK13168 rumA 23S rRNA m(5)U19 32.7 48 0.001 33.8 3.7 19 31-49 299-317 (443)
186 TIGR02085 meth_trns_rumB 23S r 32.1 51 0.0011 32.9 3.7 19 31-49 235-253 (374)
187 PF09597 IGR: IGR protein moti 32.0 48 0.001 24.3 2.6 28 165-192 12-39 (57)
188 PF02375 JmjN: jmjN domain; I 31.5 19 0.00041 23.5 0.4 15 241-255 1-15 (34)
189 TIGR00095 RNA methyltransferas 31.3 50 0.0011 29.6 3.2 37 12-49 33-69 (189)
190 TIGR02018 his_ut_repres histid 31.2 66 0.0014 29.4 4.1 55 171-238 5-64 (230)
191 TIGR00755 ksgA dimethyladenosi 30.4 55 0.0012 30.5 3.5 20 30-49 30-49 (253)
192 PRK00050 16S rRNA m(4)C1402 me 28.2 2.2E+02 0.0048 27.7 7.3 28 171-198 210-237 (296)
193 TIGR02325 C_P_lyase_phnF phosp 28.0 74 0.0016 29.0 3.8 54 170-236 11-68 (238)
194 KOG1270 Methyltransferases [Co 27.2 70 0.0015 30.8 3.5 54 31-87 91-161 (282)
195 PF03641 Lysine_decarbox: Poss 27.0 80 0.0017 26.6 3.6 39 213-254 95-133 (133)
196 PRK13943 protein-L-isoaspartat 26.6 62 0.0013 31.8 3.2 20 30-49 81-100 (322)
197 KOG3191 Predicted N6-DNA-methy 26.5 83 0.0018 28.9 3.7 39 11-52 28-66 (209)
198 COG1942 Uncharacterized protei 25.9 2E+02 0.0042 21.8 5.1 45 38-82 8-53 (69)
199 PRK14999 histidine utilization 25.8 84 0.0018 28.9 3.8 56 170-238 15-75 (241)
200 COG2609 AceE Pyruvate dehydrog 25.7 5.3E+02 0.011 28.6 9.9 135 163-323 198-341 (887)
201 COG4976 Predicted methyltransf 25.6 34 0.00074 32.5 1.1 66 175-270 203-268 (287)
202 TIGR01444 fkbM_fam methyltrans 25.0 37 0.0008 28.1 1.2 17 32-48 1-17 (143)
203 KOG3463 Transcription initiati 25.0 65 0.0014 26.6 2.5 53 215-269 14-67 (109)
204 PHA00457 inhibitor of host bac 24.8 70 0.0015 23.7 2.3 29 236-265 25-57 (63)
205 PF07757 AdoMet_MTase: Predict 24.6 37 0.0008 28.3 1.0 14 29-42 58-71 (112)
206 PF10357 Kin17_mid: Domain of 24.4 70 0.0015 27.3 2.7 88 161-251 10-99 (127)
207 smart00400 ZnF_CHCC zinc finge 24.4 64 0.0014 22.8 2.1 20 32-51 23-42 (55)
208 KOG3433 Protein involved in me 24.0 53 0.0011 29.8 1.9 37 212-248 39-75 (203)
209 PF07942 N2227: N2227-like pro 23.6 3.3E+02 0.0072 26.2 7.4 65 173-267 178-242 (270)
210 TIGR00479 rumA 23S rRNA (uraci 22.5 1E+02 0.0022 31.2 3.9 19 30-48 293-311 (431)
211 PF09445 Methyltransf_15: RNA 22.2 49 0.0011 29.3 1.4 19 32-50 2-20 (163)
212 PRK00745 4-oxalocrotonate taut 22.0 1.2E+02 0.0027 21.4 3.3 44 38-82 8-52 (62)
213 PF01739 CheR: CheR methyltran 21.8 1.7E+02 0.0037 26.5 4.9 44 28-77 30-73 (196)
214 PF03514 GRAS: GRAS domain fam 21.6 8.1E+02 0.018 24.4 15.4 45 28-80 109-153 (374)
215 PF08044 DUF1707: Domain of un 21.2 95 0.0021 22.2 2.5 41 215-255 9-50 (53)
216 KOG1661 Protein-L-isoaspartate 21.2 92 0.002 29.2 3.0 31 152-198 164-194 (237)
217 smart00545 JmjN Small domain f 21.0 62 0.0013 22.1 1.4 16 240-255 2-17 (42)
218 TIGR03357 VI_zyme type VI secr 20.8 4.9E+02 0.011 21.6 7.9 24 15-38 30-53 (133)
219 PRK09764 DNA-binding transcrip 20.7 1.3E+02 0.0028 27.7 4.0 54 170-236 8-65 (240)
No 1
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.2e-99 Score=739.82 Aligned_cols=322 Identities=57% Similarity=0.935 Sum_probs=274.7
Q ss_pred HHHHHHhhccc-CCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcC-CCCCceEEEeCCCCCCchHHHHHhhHhhH
Q 018892 15 TEEAMTKLFCS-TSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLG-SQLPEFQVFLNDLPGNDFNTIFRSLASFQ 92 (349)
Q Consensus 15 l~~ai~~~~~~-~~~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~-~~~p~~~v~~nDlP~NDFn~LF~~l~~~~ 92 (349)
||+||.+++.. ..+++++|||||||+|+||+.+|+.||++|+++|++.+ +++|+|||||||||+||||+||++|+.+.
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 68999999864 47899999999999999999999999999999998766 67899999999999999999999999998
Q ss_pred HHHHHhhCCCCCCCCceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCC------CCceeEEcCCCCHHHHH
Q 018892 93 KILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NKGNIFMASTSPPCVLT 166 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~------n~~~i~~~~ss~~~v~~ 166 (349)
+++.+ . ++||++|||||||+||||++||||+||++||||||++|+.+.+ |||+||++++++++|.+
T Consensus 81 ~~~~~-----~---~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ 152 (334)
T PF03492_consen 81 QSLKK-----F---RNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAK 152 (334)
T ss_dssp HHHHH-----T---TSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHH
T ss_pred hccCC-----C---ceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHH
Confidence 88776 1 7899999999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCC
Q 018892 167 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPS 246 (349)
Q Consensus 167 ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s 246 (349)
||++||++||.+||++||+||+|||+|||+++||++.++...+.+.+|++|+++|+|||.||+|++||+|+||+|+|+||
T Consensus 153 ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps 232 (334)
T PF03492_consen 153 AYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPS 232 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---
T ss_pred HHHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCC
Confidence 99999999999999999999999999999999999977777767789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEEEEEEEEeeccccccc-CcccccccccccccchhhhHHHHHhhhhHHHHhhchhHHHHHHHHHHH
Q 018892 247 PAEIKSEVIKEGSFTIDHLEVSEVNWNAYQN-GFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYRE 325 (349)
Q Consensus 247 ~~E~~~~ie~~GsF~i~~~e~~~~~w~~~~~-~~~~~d~~~~~~~~~~~~a~~iRA~~ep~l~~hfg~~i~delF~r~~~ 325 (349)
.+|++++|+++|+|+|+++|+++.+|..... ....+| ...+|+.+++++||++||+|++|||++|+|+||+||++
T Consensus 233 ~eEv~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~ 308 (334)
T PF03492_consen 233 PEEVRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKED----AKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAK 308 (334)
T ss_dssp HHHHHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTT----HHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEEEEeecccccchhhhcccc----hhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999999999999999999966554332 111122 66789999999999999999999999999999999999
Q ss_pred HHHhhhhhcC---CceEEEEEEEEec
Q 018892 326 IVADRMSKEK---TKFINVTVSLTKI 348 (349)
Q Consensus 326 ~v~~~~~~~~---~~~~~~~~~l~r~ 348 (349)
+++++++.++ +++++++++|+||
T Consensus 309 ~v~~~~~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 309 KVAEHLEKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHHHHHHHTHTT-BEEEEEEEEEEE-
T ss_pred HHHHHHHHhhccCCCcEEEEEEEeeC
Confidence 9999998776 8999999999997
No 2
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=2e-97 Score=729.95 Aligned_cols=337 Identities=37% Similarity=0.605 Sum_probs=302.8
Q ss_pred hHHHHHHHhHHHHHHHHHhhcccCCC-CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCch
Q 018892 3 VQEKVISIAKPITEEAMTKLFCSTSP-TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDF 81 (349)
Q Consensus 3 ~Q~~~~~~~~~~l~~ai~~~~~~~~~-~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDF 81 (349)
+|++++..++|+|++||++++.+..+ ++++|||||||+|+||+.+|++||++|+++|++.++++|||||||||||+|||
T Consensus 36 ~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDF 115 (386)
T PLN02668 36 AQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDF 115 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCH
Confidence 79999999999999999998654434 79999999999999999999999999999998877788999999999999999
Q ss_pred HHHHHhhHhhHHHH--HHhhCCCCCCCCceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCC------CCce
Q 018892 82 NTIFRSLASFQKIL--RKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NKGN 153 (349)
Q Consensus 82 n~LF~~l~~~~~~~--~~~~~~~~~~~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~------n~~~ 153 (349)
|+||++|+.+.+.+ ..++.... ..++||++|||||||+||||++||||+||+||||||||+|+++.+ |||+
T Consensus 116 NtlF~~L~~~~~~~~~~~~~~~~~-~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~ 194 (386)
T PLN02668 116 NTLFQLLPPLANYGGSMEECLAAS-GHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGR 194 (386)
T ss_pred HHHHhhchhhhhhhcchhhhcccc-CCCceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCc
Confidence 99999999876532 11100000 014699999999999999999999999999999999999999874 9999
Q ss_pred eEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChh-hhHHHHH-HHHHHHHHHhcCCcc
Q 018892 154 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKE-CCYIWEL-LATALNNMVSEGLIE 231 (349)
Q Consensus 154 i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~-~~~~~~~-l~~al~~mv~eG~i~ 231 (349)
||+++++ ++|.+||++||++||..||++||+||+|||+||++++||++.++..++ .+.+|+. +.++|+|||.||+|+
T Consensus 195 iyi~~~s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~ 273 (386)
T PLN02668 195 VFIHGAS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVT 273 (386)
T ss_pred eEecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCC
Confidence 9999987 789999999999999999999999999999999999999987777665 5678887 999999999999999
Q ss_pred hhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEEeecccccccCcccccccccccccchhhhHHHHHhhhhHHHHhh
Q 018892 232 EEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQF 311 (349)
Q Consensus 232 ~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~~~~w~~~~~~~~~~d~~~~~~~~~~~~a~~iRA~~ep~l~~hf 311 (349)
+||+|+||+|+|+||++|++++|+++|+|+|+++|+++..|+.+.+.. +| ....++.+++++||++||+|++||
T Consensus 274 eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~--~d----~~~~g~~~a~~~RA~~E~ll~~HF 347 (386)
T PLN02668 274 SEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEP--DD----AAEVGRAMANSCRSVAGVLVDAHI 347 (386)
T ss_pred HHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCc--cc----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998765431 23 445678999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhhh--cCCceEEEEEEEEe
Q 018892 312 GEAIIDELFKRYREIVADRMSK--EKTKFINVTVSLTK 347 (349)
Q Consensus 312 g~~i~delF~r~~~~v~~~~~~--~~~~~~~~~~~l~r 347 (349)
|++|+|+||+||+++++++++. .++++++++++|+-
T Consensus 348 G~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~sL~~ 385 (386)
T PLN02668 348 GEELSNELFLRVERRATSHAKELLEKLQFFHIVASLSF 385 (386)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEec
Confidence 9999999999999999999998 89999999999974
No 3
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.07 E-value=2.5e-08 Score=93.49 Aligned_cols=220 Identities=15% Similarity=0.222 Sum_probs=126.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
+.-+|.|+||++|..+..+.+. .|.-+|+..|+-.. ..+.. ... . .+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~---------------~~~~~v~gvD~s~~----~i~~a-------~~~----~---~~ 77 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVER---------------WPAARITGIDSSPA----MLAEA-------RSR----L---PD 77 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHH---------------CCCCEEEEEECCHH----HHHHH-------HHh----C---CC
Confidence 4579999999999887644321 12357777775321 11111 110 0 12
Q ss_pred -eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 018892 109 -CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 187 (349)
Q Consensus 109 -~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 187 (349)
-|.. +.+- .+.|++++|+++|+.++||+.. + ..+|+.-.+-|
T Consensus 78 ~~~~~---~d~~-~~~~~~~fD~v~~~~~l~~~~d-~--------------------------------~~~l~~~~~~L 120 (258)
T PRK01683 78 CQFVE---ADIA-SWQPPQALDLIFANASLQWLPD-H--------------------------------LELFPRLVSLL 120 (258)
T ss_pred CeEEE---Cchh-ccCCCCCccEEEEccChhhCCC-H--------------------------------HHHHHHHHHhc
Confidence 2322 3332 3457789999999999999752 1 12344446789
Q ss_pred ccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEE
Q 018892 188 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEV 267 (349)
Q Consensus 188 ~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~ 267 (349)
+|||.+++++.+.... + .+. .+.++.......+.-...-..+.+.++.+++...+...| +.++..+.
T Consensus 121 kpgG~~~~~~~~~~~~-~-------~~~----~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~ 187 (258)
T PRK01683 121 APGGVLAVQMPDNLDE-P-------SHV----LMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHT 187 (258)
T ss_pred CCCcEEEEECCCCCCC-H-------HHH----HHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeee
Confidence 9999999986442211 1 111 122222111111110011122457789999999999998 55544433
Q ss_pred EeecccccccCcccccccccccccchhhhHHHHHhh-hhHHHHhhchhHHHHHHHHHHHHHHhhhh--hcC---CceEEE
Q 018892 268 SEVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVA-EPLLVSQFGEAIIDELFKRYREIVADRMS--KEK---TKFINV 341 (349)
Q Consensus 268 ~~~~w~~~~~~~~~~d~~~~~~~~~~~~a~~iRA~~-ep~l~~hfg~~i~delF~r~~~~v~~~~~--~~~---~~~~~~ 341 (349)
.. +.. -.....+..|+++.. .+++ .+++++..+++.+.|.+.+.+... ..+ ..|.-+
T Consensus 188 ~~-~~~---------------~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~ 250 (258)
T PRK01683 188 TY-YHP---------------MPSAQAIVEWVKGTGLRPFL-DPLTESEQAAFLAAYLARIAEAYPLQADGKVLLAFPRL 250 (258)
T ss_pred ee-eee---------------cCCchhhhhhhhhccHHHHH-hhCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEcccceE
Confidence 21 111 112346677888754 6666 569999999999999999988843 222 455566
Q ss_pred EEEEEec
Q 018892 342 TVSLTKI 348 (349)
Q Consensus 342 ~~~l~r~ 348 (349)
+++-+|+
T Consensus 251 ~~~~~~~ 257 (258)
T PRK01683 251 FIVARRK 257 (258)
T ss_pred EEEEEec
Confidence 6666664
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.06 E-value=2e-08 Score=94.42 Aligned_cols=202 Identities=15% Similarity=0.207 Sum_probs=117.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
..-+|.|+||++|..+..+ .+. .|..+|+.-|+-. +.-... .+. +-
T Consensus 29 ~~~~vLDlGcG~G~~~~~l--------~~~-------~p~~~v~gvD~s~-~~~~~a-----------~~~-------~~ 74 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYL--------ARR-------WPGAVIEALDSSP-EMVAAA-----------RER-------GV 74 (255)
T ss_pred CCCEEEEEcCCCCHHHHHH--------HHH-------CCCCEEEEEECCH-HHHHHH-----------Hhc-------CC
Confidence 4578999999999765432 221 1345777777521 111111 110 11
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
-| +-+.+ ..+.|++++|+++|+.++||+.. |. .+|+.=++-|+
T Consensus 75 ~~---~~~d~-~~~~~~~~fD~v~~~~~l~~~~d-~~--------------------------------~~l~~~~~~Lk 117 (255)
T PRK14103 75 DA---RTGDV-RDWKPKPDTDVVVSNAALQWVPE-HA--------------------------------DLLVRWVDELA 117 (255)
T ss_pred cE---EEcCh-hhCCCCCCceEEEEehhhhhCCC-HH--------------------------------HHHHHHHHhCC
Confidence 12 22444 35667889999999999999753 21 12222256799
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhh-hccCCcCcccCCHHHHHHHHhhCCceEEEEEEE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEK-VNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEV 267 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~-~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~ 267 (349)
|||++++++.+.... + .+.. +..+..++-....- -..+..+.++.+.+++...+++.| |++...+.
T Consensus 118 pgG~l~~~~~~~~~~-~-------~~~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~ 184 (255)
T PRK14103 118 PGSWIAVQVPGNFDA-P-------SHAA----VRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWET 184 (255)
T ss_pred CCcEEEEEcCCCcCC-h-------hHHH----HHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCC-CeEEEEee
Confidence 999999987653221 1 1111 11111111111100 001233556789999999999999 98766554
Q ss_pred EeecccccccCcccccccccccccchhhhHHHHHh-hhhHHHHhhchhHHHHHHHHHHHHHHhhh
Q 018892 268 SEVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAV-AEPLLVSQFGEAIIDELFKRYREIVADRM 331 (349)
Q Consensus 268 ~~~~w~~~~~~~~~~d~~~~~~~~~~~~a~~iRA~-~ep~l~~hfg~~i~delF~r~~~~v~~~~ 331 (349)
.... . ......+..|+++. ..+++. .++++.++++-+.+.+.+++.+
T Consensus 185 ~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~ 232 (255)
T PRK14103 185 TYVH-Q---------------LTGEDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLLREAY 232 (255)
T ss_pred eeee-e---------------CCCchhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHHHHHC
Confidence 3211 0 01134567788765 356666 5999889999999999998874
No 5
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.59 E-value=5.3e-07 Score=82.33 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=86.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
.+.+|.|+||++|..+..+... + |..+++..|...+..+..-+.++ . +-
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~------------~---~~~~~~~~D~~~~~~~~~~~~~~-----------~-----~~ 82 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKR------------F---PQAEFIALDISAGMLAQAKTKLS-----------E-----NV 82 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHh------------C---CCCcEEEEeChHHHHHHHHHhcC-----------C-----CC
Confidence 4578999999999876644321 1 34667788864332222211111 0 11
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
.| +-+++....+|++++|+++++.++||+.. ...+|+.-.+-|+
T Consensus 83 ~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~~~---------------------------------~~~~l~~~~~~L~ 126 (240)
T TIGR02072 83 QF---ICGDAEKLPLEDSSFDLIVSNLALQWCDD---------------------------------LSQALSELARVLK 126 (240)
T ss_pred eE---EecchhhCCCCCCceeEEEEhhhhhhccC---------------------------------HHHHHHHHHHHcC
Confidence 22 33555666778999999999999999742 1235667788999
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 266 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e 266 (349)
|||.+++...+.... ..+..++.. ....+++.+++...+.+. |....++
T Consensus 127 ~~G~l~~~~~~~~~~-----------~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~--f~~~~~~ 175 (240)
T TIGR02072 127 PGGLLAFSTFGPGTL-----------HELRQSFGQ----------------HGLRYLSLDELKALLKNS--FELLTLE 175 (240)
T ss_pred CCcEEEEEeCCccCH-----------HHHHHHHHH----------------hccCCCCHHHHHHHHHHh--cCCcEEE
Confidence 999999987654321 112222211 123456788888888765 6655443
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.53 E-value=2e-06 Score=79.91 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=93.8
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
..-+|+|+||++|..+..+.+.+ ..|..+|+.-|+-. +.-...+ ..+.. .+.. .+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~-~ml~~a~------~~~~~-~~~~----~~ 107 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCR------QHIAA-YHSE----IP 107 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHH------HHHHh-cCCC----CC
Confidence 34589999999998776554321 12457888888522 1111111 11111 1110 12
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
+ ..+-+++..--+| +.|++++++++||++. .|...+|+.=.+-|+
T Consensus 108 v--~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~-------------------------------~~~~~~l~~i~~~Lk 152 (239)
T TIGR00740 108 V--EILCNDIRHVEIK--NASMVILNFTLQFLPP-------------------------------EDRIALLTKIYEGLN 152 (239)
T ss_pred e--EEEECChhhCCCC--CCCEEeeecchhhCCH-------------------------------HHHHHHHHHHHHhcC
Confidence 2 2245666554344 5789999999999752 123356666788999
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhh----ccCCcCcccCCHHHHHHHHhhCCceE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKV----NCFNIPQYTPSPAEIKSEVIKEGSFT 261 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~----d~fn~P~y~~s~~E~~~~ie~~GsF~ 261 (349)
|||++++.-..+.+... ..+.+...+.......-.+++++ +.+.-.....|++|+++.++++| |+
T Consensus 153 pgG~l~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 153 PNGVLVLSEKFRFEDTK-------INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred CCeEEEEeecccCCCHh-------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 99999988544433211 11223333333333222344433 22233445579999999999999 75
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.50 E-value=8.5e-07 Score=81.61 Aligned_cols=175 Identities=13% Similarity=0.149 Sum_probs=92.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCce
Q 018892 30 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 109 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~ 109 (349)
.-+|.|+||++|..+..+... . .|..+|+.-|+-. ..-...+ ..... .+ . .++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~--------~------~~~~~v~gvD~s~-~~~~~a~------~~~~~-~~--~---~~v 98 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEA--------V------GPEGHVIGLDFSE-NMLSVGR------QKVKD-AG--L---HNV 98 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHH--------h------CCCCEEEEEECCH-HHHHHHH------HHHHh-cC--C---Cce
Confidence 468999999999976643321 1 2346777777632 1111111 11111 11 1 222
Q ss_pred EEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 018892 110 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 189 (349)
Q Consensus 110 f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 189 (349)
.-+.+....--+|++++|++++..++||++. + ..+|+.-.+-|+|
T Consensus 99 --~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~-~--------------------------------~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 99 --ELVHGNAMELPFDDNSFDYVTIGFGLRNVPD-Y--------------------------------MQVLREMYRVVKP 143 (231)
T ss_pred --EEEEechhcCCCCCCCccEEEEecccccCCC-H--------------------------------HHHHHHHHHHcCc
Confidence 2234444444478899999999999999752 1 1234444677899
Q ss_pred CceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEEe
Q 018892 190 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSE 269 (349)
Q Consensus 190 GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~~ 269 (349)
||++++.-.+.++......-....+..+-..+......+........ ..-..+++.+|+++.+++.| |++.+++.+.
T Consensus 144 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~ 220 (231)
T TIGR02752 144 GGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEVKSYT 220 (231)
T ss_pred CeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEEEEcc
Confidence 99998876554332000000000011111111111111110000000 11235789999999999999 9988776653
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.47 E-value=8.2e-06 Score=77.44 Aligned_cols=195 Identities=11% Similarity=0.052 Sum_probs=107.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
...+|.|+||++|..+..+. +.+ ..+|+.-|+..+ .....+. ..... .+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~-~~~~a~~----------~~~~~----~~ 100 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEK-MVNIAKL----------RNSDK----NK 100 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHH-HHHHHHH----------HcCcC----Cc
Confidence 45789999999999876543 111 246777775321 1111111 00000 12
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
+..+.+++...-+|++++|+++|..++|+++. .|...+|+.=++-|+
T Consensus 101 --i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~-------------------------------~d~~~~l~~i~r~Lk 147 (263)
T PTZ00098 101 --IEFEANDILKKDFPENTFDMIYSRDAILHLSY-------------------------------ADKKKLFEKCYKWLK 147 (263)
T ss_pred --eEEEECCcccCCCCCCCeEEEEEhhhHHhCCH-------------------------------HHHHHHHHHHHHHcC
Confidence 22244666666689999999999988776531 133445556678899
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~ 268 (349)
|||+++++-....+.... -+.+...+ ... ....++++|+.+.+++.| |++...+..
T Consensus 148 PGG~lvi~d~~~~~~~~~-------~~~~~~~~----~~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d~ 203 (263)
T PTZ00098 148 PNGILLITDYCADKIENW-------DEEFKAYI----KKR------------KYTLIPIQEYGDLIKSCN-FQNVVAKDI 203 (263)
T ss_pred CCcEEEEEEeccccccCc-------HHHHHHHH----Hhc------------CCCCCCHHHHHHHHHHCC-CCeeeEEeC
Confidence 999999986554432110 01111111 110 123469999999999999 887666533
Q ss_pred eecccccccCcccccccccccccchhhhHHHHHhhhhHHHHhhchhHHHHHHHHHHHHHH
Q 018892 269 EVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYREIVA 328 (349)
Q Consensus 269 ~~~w~~~~~~~~~~d~~~~~~~~~~~~a~~iRA~~ep~l~~hfg~~i~delF~r~~~~v~ 328 (349)
...|.. .+. .+...+++- +.-+.+.+|++..+.+-.-+...+.
T Consensus 204 ~~~~~~---------------~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 204 SDYWLE---------------LLQ-VELKKLEEK-KEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred cHHHHH---------------HHH-HHHHHHHHh-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 211210 111 222222222 2333445787776666666655544
No 9
>PRK08317 hypothetical protein; Provisional
Probab=98.41 E-value=3.5e-05 Score=70.07 Aligned_cols=222 Identities=17% Similarity=0.132 Sum_probs=112.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
...+|.|+||++|..+..+.... .|.-+|+.-|+-.+-....-+. ....+. .-
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~--------~~~~~~-----~~ 71 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKER--------AAGLGP-----NV 71 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHH--------hhCCCC-----ce
Confidence 45789999999998766443321 1335677777532111110000 000010 11
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
-| +.+.+...-+|++++|++++..++||+.. | ..+|+.-.+-|+
T Consensus 72 ~~---~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~--------------------------------~~~l~~~~~~L~ 115 (241)
T PRK08317 72 EF---VRGDADGLPFPDGSFDAVRSDRVLQHLED-P--------------------------------ARALAEIARVLR 115 (241)
T ss_pred EE---EecccccCCCCCCCceEEEEechhhccCC-H--------------------------------HHHHHHHHHHhc
Confidence 22 22344444478899999999999999763 2 123445577899
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~ 268 (349)
|||.+++....-.... ........+..+...|.. .+ .-| .+..++...+++.| |+..+++.+
T Consensus 116 ~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~----------~~~---~~~~~~~~~l~~aG-f~~~~~~~~ 177 (241)
T PRK08317 116 PGGRVVVLDTDWDTLV-WHSGDRALMRKILNFWSD---HF----------ADP---WLGRRLPGLFREAG-LTDIEVEPY 177 (241)
T ss_pred CCcEEEEEecCCCcee-ecCCChHHHHHHHHHHHh---cC----------CCC---cHHHHHHHHHHHcC-CCceeEEEE
Confidence 9999998865322110 000011112222222221 11 111 23468999999998 988877776
Q ss_pred eecccccccCcccccccccccccchhhhHHHHHhhhhHHHHhhchhHHHHHHHHHHHHHHhhhhhcCC-ceEEEEEEEEe
Q 018892 269 EVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYREIVADRMSKEKT-KFINVTVSLTK 347 (349)
Q Consensus 269 ~~~w~~~~~~~~~~d~~~~~~~~~~~~a~~iRA~~ep~l~~hfg~~i~delF~r~~~~v~~~~~~~~~-~~~~~~~~l~r 347 (349)
...+..... ......+....+.+.+ ..-..++-++++++.+++... .... -++.+++...|
T Consensus 178 ~~~~~~~~~-----------~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~ 239 (241)
T PRK08317 178 TLIETDLKE-----------ADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLAR----AGEFFFSVTGFLVVGR 239 (241)
T ss_pred EEeccCcch-----------hhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHh----cCCEEEEEEEEEEEEe
Confidence 544321110 1111223333333322 111234456666666655433 2222 23577777777
Q ss_pred cC
Q 018892 348 IG 349 (349)
Q Consensus 348 ~~ 349 (349)
|+
T Consensus 240 kp 241 (241)
T PRK08317 240 KP 241 (241)
T ss_pred CC
Confidence 75
No 10
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.38 E-value=3.4e-06 Score=82.48 Aligned_cols=152 Identities=20% Similarity=0.254 Sum_probs=88.7
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceE
Q 018892 31 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 110 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f 110 (349)
-+|+|+||++|..++.+.. .+ +. +|+--| |+..+..-++..... .+.. .++-
T Consensus 124 ~~VLDIGCG~G~~~~~la~------------~g---~~-~V~GiD-~S~~~l~q~~a~~~~-------~~~~----~~i~ 175 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLG------------AG---AK-LVVGID-PSQLFLCQFEAVRKL-------LGND----QRAH 175 (322)
T ss_pred CEEEEeccCCcHHHHHHHH------------cC---CC-EEEEEc-CCHHHHHHHHHHHHh-------cCCC----CCeE
Confidence 5899999999998764321 12 22 477777 554443333322211 1111 2332
Q ss_pred EeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 018892 111 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 190 (349)
Q Consensus 111 ~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G 190 (349)
+ +++++-.--+ ++++|+++|..+|||+.. | ..+|+.=++-|+||
T Consensus 176 ~--~~~d~e~lp~-~~~FD~V~s~~vl~H~~d-p--------------------------------~~~L~~l~~~LkpG 219 (322)
T PRK15068 176 L--LPLGIEQLPA-LKAFDTVFSMGVLYHRRS-P--------------------------------LDHLKQLKDQLVPG 219 (322)
T ss_pred E--EeCCHHHCCC-cCCcCEEEECChhhccCC-H--------------------------------HHHHHHHHHhcCCC
Confidence 2 3444432222 688999999999998542 2 12344456789999
Q ss_pred ceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEE
Q 018892 191 GRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 191 G~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~ 268 (349)
|++++..+..+..... . +...+.+..+...++.||.+++...+++.| |++.++...
T Consensus 220 G~lvl~~~~i~~~~~~----~-----------------l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~ 275 (322)
T PRK15068 220 GELVLETLVIDGDENT----V-----------------LVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDV 275 (322)
T ss_pred cEEEEEEEEecCCCcc----c-----------------cCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeC
Confidence 9999986544332110 0 011111223333456789999999999999 988777543
No 11
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.36 E-value=3.2e-05 Score=72.23 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=62.5
Q ss_pred CcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEE
Q 018892 116 GSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVL 195 (349)
Q Consensus 116 gSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 195 (349)
+..-.--+|++++|+++|+.++||... | ..+|+.-.+-|+|||.+++
T Consensus 92 ~d~~~~~~~~~~fD~V~s~~~l~~~~d-~--------------------------------~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 92 GDIESLPLATATFDLAWSNLAVQWCGN-L--------------------------------STALRELYRVVRPGGVVAF 138 (251)
T ss_pred cCcccCcCCCCcEEEEEECchhhhcCC-H--------------------------------HHHHHHHHHHcCCCeEEEE
Confidence 333333478899999999999999653 2 1233344678999999999
Q ss_pred EecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEEeec
Q 018892 196 TFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVN 271 (349)
Q Consensus 196 ~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~~~~ 271 (349)
...+.++- .-+.++|..+- + -....-+++.+|+...+...| +++ ..+.+...
T Consensus 139 ~~~~~~~~-----------~el~~~~~~~~--~---------~~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~~~ 190 (251)
T PRK10258 139 TTLVQGSL-----------PELHQAWQAVD--E---------RPHANRFLPPDAIEQALNGWR-YQH-HIQPITLW 190 (251)
T ss_pred EeCCCCch-----------HHHHHHHHHhc--c---------CCccccCCCHHHHHHHHHhCC-cee-eeeEEEEE
Confidence 98876541 22445554431 1 011233678999999998766 544 33444333
No 12
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.35 E-value=3.7e-05 Score=78.60 Aligned_cols=193 Identities=15% Similarity=0.178 Sum_probs=110.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
..-+|.|+||++|..++.+. +.. ..+|+--|+-. +.-...+ . +..+.. .+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvDiS~-~~l~~A~------~---~~~~~~----~~ 315 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA--------ENF--------DVHVVGIDLSV-NMISFAL------E---RAIGRK----CS 315 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH--------Hhc--------CCEEEEEECCH-HHHHHHH------H---HhhcCC----Cc
Confidence 34689999999998665432 111 24677777632 1111111 0 001110 12
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
+.-+-+.+....+|++++|+++|..++||+.. |+ .+|+.=++-|+
T Consensus 316 --v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d-~~--------------------------------~~l~~~~r~Lk 360 (475)
T PLN02336 316 --VEFEVADCTKKTYPDNSFDVIYSRDTILHIQD-KP--------------------------------ALFRSFFKWLK 360 (475)
T ss_pred --eEEEEcCcccCCCCCCCEEEEEECCcccccCC-HH--------------------------------HHHHHHHHHcC
Confidence 22244667777789999999999999999753 21 22333467899
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~ 268 (349)
|||++++....+....+.. .+...+.. .| ...++.+++.+.+++.| |++...+.+
T Consensus 361 pgG~l~i~~~~~~~~~~~~--------~~~~~~~~---~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d~ 415 (475)
T PLN02336 361 PGGKVLISDYCRSPGTPSP--------EFAEYIKQ---RG-------------YDLHDVQAYGQMLKDAG-FDDVIAEDR 415 (475)
T ss_pred CCeEEEEEEeccCCCCCcH--------HHHHHHHh---cC-------------CCCCCHHHHHHHHHHCC-Ceeeeeecc
Confidence 9999999987665432211 01111111 12 24578999999999999 998765533
Q ss_pred eecccccccCcccccccccccccchhhhHHHHHhhh--hHHHHhhchhHHHHHHHHHHHHHHhh
Q 018892 269 EVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAE--PLLVSQFGEAIIDELFKRYREIVADR 330 (349)
Q Consensus 269 ~~~w~~~~~~~~~~d~~~~~~~~~~~~a~~iRA~~e--p~l~~hfg~~i~delF~r~~~~v~~~ 330 (349)
.. .+...+..+..++.. .-+...+|++..+.+...+...+...
T Consensus 416 ~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 416 TD-------------------QFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred hH-------------------HHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhh
Confidence 21 123333333333321 12234478777777777777766543
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=98.25 E-value=4.4e-05 Score=75.15 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=61.3
Q ss_pred CcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEE
Q 018892 116 GSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVL 195 (349)
Q Consensus 116 gSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 195 (349)
+...+--||++++|+++|..++|++.. + ..+|+.=.+-|+|||++++
T Consensus 175 ~D~~~~~~~~~~FD~V~s~~~~~h~~d-~--------------------------------~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 175 ADALNQPFEDGQFDLVWSMESGEHMPD-K--------------------------------RKFVQELARVAAPGGRIII 221 (340)
T ss_pred cCcccCCCCCCCccEEEECCchhccCC-H--------------------------------HHHHHHHHHHcCCCcEEEE
Confidence 455555579999999999999988642 1 1233334677999999999
Q ss_pred EecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEE
Q 018892 196 TFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 266 (349)
Q Consensus 196 ~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e 266 (349)
......+..+...... ..-...+..+. ..+.+| .+.+.+|+.+.+++.| |...+.+
T Consensus 222 ~~~~~~~~~~~~~~l~---~~~~~~~~~i~----------~~~~~p-~~~s~~~~~~~l~~aG-f~~v~~~ 277 (340)
T PLN02244 222 VTWCHRDLEPGETSLK---PDEQKLLDKIC----------AAYYLP-AWCSTSDYVKLAESLG-LQDIKTE 277 (340)
T ss_pred EEecccccccccccCC---HHHHHHHHHHH----------hhccCC-CCCCHHHHHHHHHHCC-CCeeEee
Confidence 8655433221110000 01112222221 112334 2358999999999999 8876554
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.20 E-value=1.4e-05 Score=75.02 Aligned_cols=167 Identities=22% Similarity=0.235 Sum_probs=97.3
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
+..+|+|+||++|--++.+.+.+ | +-+|..-| ||. ..|.--.++..+ . +.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~-----------g----~g~v~~~D-----~s~--~ML~~a~~k~~~-----~---~~ 100 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV-----------G----TGEVVGLD-----ISE--SMLEVAREKLKK-----K---GV 100 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc-----------C----CceEEEEE-----CCH--HHHHHHHHHhhc-----c---Cc
Confidence 57999999999998877554322 1 35666665 332 112211122211 1 11
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
..+.-|=|..-+=-||++|+|++.+++.||++.+.+..| +.=++-||
T Consensus 101 ~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL---------------------------------~E~~RVlK 147 (238)
T COG2226 101 QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKAL---------------------------------KEMYRVLK 147 (238)
T ss_pred cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHH---------------------------------HHHHHhhc
Confidence 113334456666669999999999999999988655433 23367899
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHH-HHHHHHhcCCcc--hhhhc-cCCcCcccCCHHHHHHHHhhCCceEEEE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLAT-ALNNMVSEGLIE--EEKVN-CFNIPQYTPSPAEIKSEVIKEGSFTIDH 264 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~-al~~mv~eG~i~--~e~~d-~fn~P~y~~s~~E~~~~ie~~GsF~i~~ 264 (349)
|||++++.=.+++...+...- ....... ++--+. .+++ .+++. -....--+|+.+|+.+.+++.| |+...
T Consensus 148 pgG~~~vle~~~p~~~~~~~~---~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~ 221 (238)
T COG2226 148 PGGRLLVLEFSKPDNPVLRKA---YILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR 221 (238)
T ss_pred CCeEEEEEEcCCCCchhhHHH---HHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence 999998887777654222110 1111222 222221 1111 12111 1233456899999999999998 77555
No 15
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.14 E-value=2.3e-05 Score=67.09 Aligned_cols=90 Identities=23% Similarity=0.224 Sum_probs=60.9
Q ss_pred ccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecc
Q 018892 120 GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG 199 (349)
Q Consensus 120 ~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 199 (349)
...+|++++|+++|+.+|||+.. | ..+|+.=.+=|+|||.+++....
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d-~--------------------------------~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPD-P--------------------------------EEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSH-H--------------------------------HHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hhhccccchhhHhhHHHHhhccc-H--------------------------------HHHHHHHHHhcCCCCEEEEEEcC
Confidence 44568899999999999999873 2 23455557789999999999987
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEE
Q 018892 200 RKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDH 264 (349)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~ 264 (349)
+... ....+..+ ....... --..+.+.++++..+++.| |+|.+
T Consensus 118 ~~~~-------------~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 118 RDDP-------------SPRSFLKW---RYDRPYG-----GHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp TTSH-------------HHHHHHHC---CGTCHHT-----TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred Ccch-------------hhhHHHhc---CCcCccC-----ceeccCCHHHHHHHHHHCC-CEEEE
Confidence 7531 11112221 1111110 1125669999999999999 88864
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.13 E-value=0.0001 Score=69.26 Aligned_cols=102 Identities=19% Similarity=0.306 Sum_probs=62.1
Q ss_pred cCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCC
Q 018892 123 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS 202 (349)
Q Consensus 123 fP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~ 202 (349)
+|++++|++++..+|||+.. |.. +|+.=++-|+|||++++.+.....
T Consensus 108 ~~~~~fD~V~~~~vl~~~~~-~~~--------------------------------~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 108 HLETPVDLILFHAVLEWVAD-PKS--------------------------------VLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred hcCCCCCEEEehhHHHhhCC-HHH--------------------------------HHHHHHHHcCCCeEEEEEEECccH
Confidence 56789999999999999863 311 122225679999999988754321
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEEe
Q 018892 203 QDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSE 269 (349)
Q Consensus 203 ~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~~ 269 (349)
. .+-..+..-+ +.+..|+...+.. .-.|.+..+++|+.+.+++.| |++++..-+.
T Consensus 155 ~--------~~~~~~~~~~-~~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~~gi~ 209 (255)
T PRK11036 155 L--------LMHNMVAGNF-DYVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGKTGVR 209 (255)
T ss_pred H--------HHHHHHccCh-HHHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeeeeeEE
Confidence 1 0111111111 1122333222111 123667789999999999998 9998776654
No 17
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.12 E-value=7.2e-05 Score=70.91 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=60.1
Q ss_pred ccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccC
Q 018892 122 LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 201 (349)
Q Consensus 122 lfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~ 201 (349)
-||++|+|++++++++||+.. | ..+|+.=++-|+|||++++.-.+.+
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d-~--------------------------------~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVD-R--------------------------------LKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred CCCCCCEeEEEEecccccCCC-H--------------------------------HHHHHHHHHHcCcCcEEEEEECCCC
Confidence 378999999999999999752 2 1233444778999999999887765
Q ss_pred CCCCCChhhhHHHHHH-HHHHHHHH-hcCCcchhhhccCCcC---cccCCHHHHHHHHhhCCceEEEEEE
Q 018892 202 SQDPSSKECCYIWELL-ATALNNMV-SEGLIEEEKVNCFNIP---QYTPSPAEIKSEVIKEGSFTIDHLE 266 (349)
Q Consensus 202 ~~~~~~~~~~~~~~~l-~~al~~mv-~eG~i~~e~~d~fn~P---~y~~s~~E~~~~ie~~GsF~i~~~e 266 (349)
+. +.. ..+++.+ ...+.-+. .-|. .+.+. .++ -.+++.+|+.+.+++.| |++.+..
T Consensus 187 ~~-~~~---~~~~~~~~~~~~~~~~~~~~~--~~~y~--~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~ 247 (261)
T PLN02233 187 TQ-PFT---TSMQEWMIDNVVVPVATGYGL--AKEYE--YLKSSINEYLTGEELEKLALEAG-FSSAKHY 247 (261)
T ss_pred Cc-HHH---HHHHHHHHhhhhhHHHHHhCC--hHHHH--HHHHHHHhcCCHHHHHHHHHHCC-CCEEEEE
Confidence 42 100 1111111 11111110 0021 11111 011 12789999999999999 8866543
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.12 E-value=7.3e-05 Score=72.99 Aligned_cols=93 Identities=20% Similarity=0.169 Sum_probs=59.2
Q ss_pred cccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEeccc
Q 018892 121 RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR 200 (349)
Q Consensus 121 rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~ 200 (349)
.+-+.+++|.|+|+.+|||+.. |. .+|+.=++-|+|||.||+.....
T Consensus 182 ~lp~~~~FD~V~s~gvL~H~~d-p~--------------------------------~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 182 QLHELYAFDTVFSMGVLYHRKS-PL--------------------------------EHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred HCCCCCCcCEEEEcchhhccCC-HH--------------------------------HHHHHHHHhcCCCCEEEEEEEEe
Confidence 3434568999999999999642 21 23444477899999999987543
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEE
Q 018892 201 KSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~ 268 (349)
+..... . +...+....+.-.++.||.+++...+++.| |+..++...
T Consensus 229 ~g~~~~----~-----------------l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~ 274 (314)
T TIGR00452 229 DGDLNT----V-----------------LVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDV 274 (314)
T ss_pred cCcccc----c-----------------cCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEec
Confidence 221000 0 001111222333467789999999999999 887666443
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.11 E-value=5.5e-05 Score=70.96 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=90.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
..-+|.|+||++|.+++.+...+ ..|..+|+.-|. +-+.-...+.. +.. .+. ..+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~-S~~ml~~A~~~------~~~-~~~----~~~ 110 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDN-SPAMIERCRRH------IDA-YKA----PTP 110 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeC-CHHHHHHHHHH------HHh-cCC----CCC
Confidence 45689999999999866433211 124467777773 22222222211 111 111 012
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
+- .+.+++..- |....|+++++.++||++. + +...+|+.=++-|+
T Consensus 111 v~--~~~~d~~~~--~~~~~D~vv~~~~l~~l~~--~-----------------------------~~~~~l~~i~~~Lk 155 (247)
T PRK15451 111 VD--VIEGDIRDI--AIENASMVVLNFTLQFLEP--S-----------------------------ERQALLDKIYQGLN 155 (247)
T ss_pred eE--EEeCChhhC--CCCCCCEEehhhHHHhCCH--H-----------------------------HHHHHHHHHHHhcC
Confidence 22 234555443 3345899999999999862 1 11233444477899
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccC----CcCcccCCHHHHHHHHhhCCceE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCF----NIPQYTPSPAEIKSEVIKEGSFT 261 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f----n~P~y~~s~~E~~~~ie~~GsF~ 261 (349)
|||.+++.=.-..+... ..+.+...|.++....-.+++++..+ .--...-|+++..+.+++.| |+
T Consensus 156 pGG~l~l~e~~~~~~~~-------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 156 PGGALVLSEKFSFEDAK-------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred CCCEEEEEEecCCCcch-------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence 99999997422222111 12334445555555555666555431 11122248999999999999 64
No 20
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.10 E-value=4.1e-05 Score=69.99 Aligned_cols=172 Identities=17% Similarity=0.213 Sum_probs=91.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCce
Q 018892 30 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 109 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~ 109 (349)
..+|+|+||++|..+..+.... ++..+++..|+..+=. .... ..... .+. ..++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~----~~a~---~~~~~-~~~----~~~~ 105 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEGML----AVGR---EKLRD-LGL----SGNV 105 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHHHH----HHHH---Hhhcc-ccc----ccCe
Confidence 4799999999998776543321 1246788888743211 1111 10101 000 0222
Q ss_pred EEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 018892 110 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 189 (349)
Q Consensus 110 f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 189 (349)
- .+-+++....++++++|++++++++|+++.. ..+|+.-.+-|+|
T Consensus 106 ~--~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~~ 150 (239)
T PRK00216 106 E--FVQGDAEALPFPDNSFDAVTIAFGLRNVPDI---------------------------------DKALREMYRVLKP 150 (239)
T ss_pred E--EEecccccCCCCCCCccEEEEecccccCCCH---------------------------------HHHHHHHHHhccC
Confidence 1 2335666656788899999999999986531 1234455677999
Q ss_pred CceEEEEecccCCCCCCChhhhHHHHHHHH-H---HHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEE
Q 018892 190 EGRMVLTFLGRKSQDPSSKECCYIWELLAT-A---LNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHL 265 (349)
Q Consensus 190 GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~-a---l~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~ 265 (349)
||++++.-...+.... . ...++.... . ...+........+.+. +.--.+++.+|++.++++.| |++.+.
T Consensus 151 gG~li~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aG-f~~~~~ 223 (239)
T PRK00216 151 GGRLVILEFSKPTNPP-L---KKAYDFYLFKVLPLIGKLISKNAEAYSYLA--ESIRAFPDQEELAAMLEEAG-FERVRY 223 (239)
T ss_pred CcEEEEEEecCCCchH-H---HHHHHHHHHhhhHHHHHHHcCCcHHHHHHH--HHHHhCCCHHHHHHHHHhCC-Cceeee
Confidence 9999876554433211 0 111111100 0 1111111110000000 00123579999999999999 988777
Q ss_pred EEEe
Q 018892 266 EVSE 269 (349)
Q Consensus 266 e~~~ 269 (349)
..+.
T Consensus 224 ~~~~ 227 (239)
T PRK00216 224 RNLT 227 (239)
T ss_pred eeee
Confidence 7654
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.90 E-value=0.00017 Score=70.68 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=63.3
Q ss_pred CcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEE
Q 018892 116 GSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVL 195 (349)
Q Consensus 116 gSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 195 (349)
+++.+--++++++|++++..+|||+.. | ..||+.=++-|+|||++++
T Consensus 187 ~dae~l~~~~~~FD~Vi~~~vLeHv~d-~--------------------------------~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 187 TTAEKLADEGRKFDAVLSLEVIEHVAN-P--------------------------------AEFCKSLSALTIPNGATVL 233 (322)
T ss_pred cCHHHhhhccCCCCEEEEhhHHHhcCC-H--------------------------------HHHHHHHHHHcCCCcEEEE
Confidence 444433357789999999999999773 2 1244555677999999999
Q ss_pred EecccCCCCCCChhhhHHHHHH-HHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEE
Q 018892 196 TFLGRKSQDPSSKECCYIWELL-ATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 196 ~~~g~~~~~~~~~~~~~~~~~l-~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~ 268 (349)
....+... .+....+ ..-+...+..| .-....+.+++|+...+++.| |++..+.-+
T Consensus 234 st~nr~~~-------~~~~~i~~~eyi~~~lp~g---------th~~~~f~tp~eL~~lL~~aG-f~i~~~~G~ 290 (322)
T PLN02396 234 STINRTMR-------AYASTIVGAEYILRWLPKG---------THQWSSFVTPEELSMILQRAS-VDVKEMAGF 290 (322)
T ss_pred EECCcCHH-------HHHHhhhhHHHHHhcCCCC---------CcCccCCCCHHHHHHHHHHcC-CeEEEEeee
Confidence 98654321 1101111 01111111122 011224789999999999998 888877544
No 22
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.86 E-value=0.00085 Score=61.33 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=57.1
Q ss_pred ccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccC
Q 018892 122 LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 201 (349)
Q Consensus 122 lfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~ 201 (349)
.+| +++|+++|..++|++.. +..+|+.=++-|+|||++++.-....
T Consensus 63 ~~~-~~fD~I~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 108 (224)
T smart00828 63 PFP-DTYDLVFGFEVIHHIKD---------------------------------KMDLFSNISRHLKDGGHLVLADFIAN 108 (224)
T ss_pred CCC-CCCCEeehHHHHHhCCC---------------------------------HHHHHHHHHHHcCCCCEEEEEEcccc
Confidence 344 58999999999999642 22345555788999999998754321
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEEe
Q 018892 202 SQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSE 269 (349)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~~ 269 (349)
... + +.. -..+.|.++.+|+...+++.| |++.+.+.+.
T Consensus 109 ~~~-----------------------~-~~~-----~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~ 146 (224)
T smart00828 109 LLS-----------------------A-IEH-----EETTSYLVTREEWAELLARNN-LRVVEGVDAS 146 (224)
T ss_pred cCc-----------------------c-ccc-----cccccccCCHHHHHHHHHHCC-CeEEEeEECc
Confidence 100 0 000 113456899999999999998 9988776653
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.85 E-value=0.00032 Score=69.25 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=86.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
...+|.|+||++|..++.+.+. + +..+|..-|+-.+ .-...+.. ... .+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~----~-----------~~~~VtgVD~S~~-mL~~A~~k------~~~---------~~ 161 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKH----V-----------DAKNVTILDQSPH-QLAKAKQK------EPL---------KE 161 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHH----C-----------CCCEEEEEECCHH-HHHHHHHh------hhc---------cC
Confidence 3579999999999877644321 0 1246777776322 11111110 000 12
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
+ ..+.|+...--+|++++|+++++.++|++.. |+ ..|+.=.+-|+
T Consensus 162 i--~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d-~~--------------------------------~~L~e~~rvLk 206 (340)
T PLN02490 162 C--KIIEGDAEDLPFPTDYADRYVSAGSIEYWPD-PQ--------------------------------RGIKEAYRVLK 206 (340)
T ss_pred C--eEEeccHHhCCCCCCceeEEEEcChhhhCCC-HH--------------------------------HHHHHHHHhcC
Confidence 1 1145555555578999999999999998542 11 13445577899
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~ 268 (349)
|||++++.-....+ .| +..-+.++ -..+++.+|+.+.+++.| |+..+++..
T Consensus 207 PGG~LvIi~~~~p~----------~~--~~r~~~~~----------------~~~~~t~eEl~~lL~~aG-F~~V~i~~i 257 (340)
T PLN02490 207 IGGKACLIGPVHPT----------FW--LSRFFADV----------------WMLFPKEEEYIEWFTKAG-FKDVKLKRI 257 (340)
T ss_pred CCcEEEEEEecCcc----------hh--HHHHhhhh----------------hccCCCHHHHHHHHHHCC-CeEEEEEEc
Confidence 99999876322111 01 11111110 112579999999999998 988777765
Q ss_pred eecc
Q 018892 269 EVNW 272 (349)
Q Consensus 269 ~~~w 272 (349)
...|
T Consensus 258 ~~~~ 261 (340)
T PLN02490 258 GPKW 261 (340)
T ss_pred Chhh
Confidence 4444
No 24
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.84 E-value=0.0003 Score=64.92 Aligned_cols=165 Identities=17% Similarity=0.277 Sum_probs=98.8
Q ss_pred ccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecc
Q 018892 120 GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG 199 (349)
Q Consensus 120 ~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 199 (349)
...-|+...|++||+.+||||..-|+.+. .=-.+|.|||.+-+.|++
T Consensus 85 ~~w~p~~~~dllfaNAvlqWlpdH~~ll~---------------------------------rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 85 RTWKPEQPTDLLFANAVLQWLPDHPELLP---------------------------------RLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hhcCCCCccchhhhhhhhhhccccHHHHH---------------------------------HHHHhhCCCceEEEECCC
Confidence 34568999999999999999876443221 113579999999999987
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCc-CcccCCHHHHHHHHhhCCceEEEEEEEEeecccccccC
Q 018892 200 RKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNI-PQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNG 278 (349)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~-P~y~~s~~E~~~~ie~~GsF~i~~~e~~~~~w~~~~~~ 278 (349)
--++ ++ |-++. +.++++=... ++..+.. ----+|+.-|-.++...+ =+|+--++. +. .-
T Consensus 132 N~de-ps-------H~~mr----~~A~~~p~~~-~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T~---Y~---h~ 191 (257)
T COG4106 132 NLDE-PS-------HRLMR----ETADEAPFAQ-ELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHTT---YY---HQ 191 (257)
T ss_pred ccCc-hh-------HHHHH----HHHhcCchhh-hhCccccccCCCCCHHHHHHHhCccc-ceeeeeeee---cc---cc
Confidence 6543 21 22232 3333321111 1111111 111356777777777655 233332222 11 11
Q ss_pred cccccccccccccchhhhHHHHHhhh-hHHHHhhchhHHHHHHHHHHHHHHhhhhhc-CC----ceEEEEEEEEec
Q 018892 279 FKFNEAVDAFNDGGYNVANCMRAVAE-PLLVSQFGEAIIDELFKRYREIVADRMSKE-KT----KFINVTVSLTKI 348 (349)
Q Consensus 279 ~~~~d~~~~~~~~~~~~a~~iRA~~e-p~l~~hfg~~i~delF~r~~~~v~~~~~~~-~~----~~~~~~~~l~r~ 348 (349)
-..+..+..|+++..- |.+.. ++++-...+.++|..++++++-.. .. .|.-++++-+|+
T Consensus 192 ----------l~~a~aIvdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~~ 256 (257)
T COG4106 192 ----------LPGADAIVDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATRG 256 (257)
T ss_pred ----------CCCccchhhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEecC
Confidence 1235678889987654 77776 999999999999999999874332 22 355667776665
No 25
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.78 E-value=0.0013 Score=65.84 Aligned_cols=141 Identities=13% Similarity=0.211 Sum_probs=85.2
Q ss_pred CCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCCCC
Q 018892 125 RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQD 204 (349)
Q Consensus 125 ~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~ 204 (349)
++++|.++|...+||+.. +++..+++.=.+-|+|||++++...+.+...
T Consensus 226 ~~~fD~Ivs~~~~ehvg~-------------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~ 274 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGP-------------------------------KNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD 274 (383)
T ss_pred CCCCCEEEEeCchhhCCh-------------------------------HHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 578999999988888531 1334455566788999999999987765421
Q ss_pred CCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCc-ccCCHHHHHHHHhhCCceEEEEEEEEeecccccccCccccc
Q 018892 205 PSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQ-YTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNE 283 (349)
Q Consensus 205 ~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~-y~~s~~E~~~~ie~~GsF~i~~~e~~~~~w~~~~~~~~~~d 283 (349)
... ..-++.+.+|- +.|+.+++....+ .| |++..++.+.
T Consensus 275 ~~~------------------------~~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~~-------------- 314 (383)
T PRK11705 275 TNV------------------------DPWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNFG-------------- 314 (383)
T ss_pred CCC------------------------CCCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecCh--------------
Confidence 100 01123455663 6899999999877 35 8887776542
Q ss_pred ccccccccchhhhHHHHHhhhh--HHHHhhchhHHHHHHHHHHHHHHhhhhhcCCceEEEE
Q 018892 284 AVDAFNDGGYNVANCMRAVAEP--LLVSQFGEAIIDELFKRYREIVADRMSKEKTKFINVT 342 (349)
Q Consensus 284 ~~~~~~~~~~~~a~~iRA~~ep--~l~~hfg~~i~delF~r~~~~v~~~~~~~~~~~~~~~ 342 (349)
..|++++..|.+.+-.. -+.+-+|+. .-.+++-|-.-.+........+...++
T Consensus 315 -----~hy~~TL~~W~~~f~~~~~~~~~~~~~~-~~r~w~~yl~~~~~~F~~~~~~~~q~~ 369 (383)
T PRK11705 315 -----ADYDRTLMAWHENFEAAWPELADNYSER-FYRMWRYYLLSCAGAFRARDIQLWQVV 369 (383)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 12445555555444332 123335543 333556666666666666555555553
No 26
>PRK06202 hypothetical protein; Provisional
Probab=97.78 E-value=0.0005 Score=63.56 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=23.1
Q ss_pred cccCCHHHHHHHHhhCCceEEEEEEEEeecc
Q 018892 242 QYTPSPAEIKSEVIKEGSFTIDHLEVSEVNW 272 (349)
Q Consensus 242 ~y~~s~~E~~~~ie~~GsF~i~~~e~~~~~w 272 (349)
.-+++.+|+.+.+++ | |++.+.-.|...|
T Consensus 199 ~~~~~~~el~~ll~~-G-f~~~~~~~~~~~~ 227 (232)
T PRK06202 199 RRSYTPAELAALAPQ-G-WRVERQWPFRYLL 227 (232)
T ss_pred HhhcCHHHHHHHhhC-C-CeEEeccceeeEE
Confidence 347899999999998 7 9998887665443
No 27
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.76 E-value=0.00062 Score=61.50 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=91.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
...+|.|+||+.|..+..+.... ++..+++.-|.-. ......... .. .. .+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~--------------~~~~~~~~iD~~~----~~~~~~~~~---~~---~~-----~~ 89 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA--------------PDRGKVTGVDFSS----EMLEVAKKK---SE---LP-----LN 89 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc--------------CCCceEEEEECCH----HHHHHHHHH---hc---cC-----CC
Confidence 46799999999998776553221 1125677777521 111111110 00 00 12
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
+-+ +.+++..-.++++++|+++++..+|++.. ...+|+.-.+-|+
T Consensus 90 i~~--~~~d~~~~~~~~~~~D~i~~~~~~~~~~~---------------------------------~~~~l~~~~~~L~ 134 (223)
T TIGR01934 90 IEF--IQADAEALPFEDNSFDAVTIAFGLRNVTD---------------------------------IQKALREMYRVLK 134 (223)
T ss_pred ceE--EecchhcCCCCCCcEEEEEEeeeeCCccc---------------------------------HHHHHHHHHHHcC
Confidence 222 23555565578889999999999988542 1235666688999
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHHHHHH-HHh--cCCcchhhhccCC----cCcccCCHHHHHHHHhhCCceE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNN-MVS--EGLIEEEKVNCFN----IPQYTPSPAEIKSEVIKEGSFT 261 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~-mv~--eG~i~~e~~d~fn----~P~y~~s~~E~~~~ie~~GsF~ 261 (349)
|||++++.-.......+ +..+.+.+.. |.. .+..... .+.+. ...-+++.+|++.++++.| |+
T Consensus 135 ~gG~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~ 204 (223)
T TIGR01934 135 PGGRLVILEFSKPANAL--------LKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FE 204 (223)
T ss_pred CCcEEEEEEecCCCchh--------hHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cc
Confidence 99999876543322111 1111122111 110 0111111 11111 0122578999999999999 98
Q ss_pred EEEEEEEe
Q 018892 262 IDHLEVSE 269 (349)
Q Consensus 262 i~~~e~~~ 269 (349)
+.+.+.+.
T Consensus 205 ~~~~~~~~ 212 (223)
T TIGR01934 205 EVRYRSLT 212 (223)
T ss_pred cceeeeee
Confidence 88777654
No 28
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.74 E-value=2.1e-05 Score=73.56 Aligned_cols=168 Identities=20% Similarity=0.230 Sum_probs=60.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
...+|.|+||++|-.|+.+.. . -.|..+|+.-|. +. ..|.--.++.... +. .+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~--------~------~~~~~~v~~vD~-----s~--~ML~~a~~k~~~~-~~-----~~ 99 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELAR--------R------VGPNGKVVGVDI-----SP--GMLEVARKKLKRE-GL-----QN 99 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGG--------G------SS---EEEEEES------H--HHHHHHHHHHHHT-T-------S
T ss_pred CCCEEEEeCCChHHHHHHHHH--------H------CCCccEEEEecC-----CH--HHHHHHHHHHHhh-CC-----CC
Confidence 457999999999987764421 1 123456776663 22 1111111222221 11 23
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
+. -+-|+.-.==||++|+|.+.+++.||-+...+ ..|+.=.+-||
T Consensus 100 i~--~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~---------------------------------~~l~E~~RVLk 144 (233)
T PF01209_consen 100 IE--FVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRE---------------------------------RALREMYRVLK 144 (233)
T ss_dssp EE--EEE-BTTB--S-TT-EEEEEEES-GGG-SSHH---------------------------------HHHHHHHHHEE
T ss_pred ee--EEEcCHHHhcCCCCceeEEEHHhhHHhhCCHH---------------------------------HHHHHHHHHcC
Confidence 32 23355555458999999999999999865311 12334467899
Q ss_pred cCceEEEEecccCCCCCCChhhhHHHHHHHH-HHHHHHhcCCcchhhhccC-C---cCcccCCHHHHHHHHhhCCceEEE
Q 018892 189 AEGRMVLTFLGRKSQDPSSKECCYIWELLAT-ALNNMVSEGLIEEEKVNCF-N---IPQYTPSPAEIKSEVIKEGSFTID 263 (349)
Q Consensus 189 ~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~-al~~mv~eG~i~~e~~d~f-n---~P~y~~s~~E~~~~ie~~GsF~i~ 263 (349)
|||++++.=.+++.... ...++...-. ++--+ -++++.+ .+.+ . .-.-+|+.+|+.+.+++.| |+..
T Consensus 145 PGG~l~ile~~~p~~~~----~~~~~~~y~~~ilP~~--g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v 216 (233)
T PF01209_consen 145 PGGRLVILEFSKPRNPL----LRALYKFYFKYILPLI--GRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNV 216 (233)
T ss_dssp EEEEEEEEEEEB-SSHH----HHHHHHH----------------------------------------------------
T ss_pred CCeEEEEeeccCCCCch----hhceeeeeeccccccc--ccccccc-cccccccccccccccccccccccccccc-cccc
Confidence 99999988888775311 1112221111 11111 1223332 2222 1 1224789999999999999 8754
Q ss_pred EEE
Q 018892 264 HLE 266 (349)
Q Consensus 264 ~~e 266 (349)
+.+
T Consensus 217 ~~~ 219 (233)
T PF01209_consen 217 EYR 219 (233)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 29
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.67 E-value=0.00032 Score=56.65 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=30.0
Q ss_pred eeEEEecc-cccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEe
Q 018892 128 VHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 128 vh~~~Ss~-alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
+|+++++. ++|++-.. .+...+|+.-.+-|+|||+|++.-
T Consensus 71 ~D~v~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPL------------------------------DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEEEECSGSGGGCCHH------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCccccccch------------------------------hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 89999999 77754321 345566777789999999999863
No 30
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.67 E-value=0.00014 Score=56.32 Aligned_cols=50 Identities=28% Similarity=0.264 Sum_probs=37.1
Q ss_pred ecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCce
Q 018892 113 GVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGR 192 (349)
Q Consensus 113 ~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 192 (349)
-+-+++..--||++|+|+++++.++||+. |...+|+.=.+-|||||+
T Consensus 46 ~~~~d~~~l~~~~~sfD~v~~~~~~~~~~---------------------------------~~~~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 46 FRQGDAEDLPFPDNSFDVVFSNSVLHHLE---------------------------------DPEAALREIYRVLKPGGR 92 (95)
T ss_dssp EEESBTTSSSS-TT-EEEEEEESHGGGSS---------------------------------HHHHHHHHHHHHEEEEEE
T ss_pred heeehHHhCccccccccccccccceeecc---------------------------------CHHHHHHHHHHHcCcCeE
Confidence 35566777799999999999999999982 223344555788999999
Q ss_pred EEE
Q 018892 193 MVL 195 (349)
Q Consensus 193 mvl 195 (349)
+++
T Consensus 93 l~~ 95 (95)
T PF08241_consen 93 LVI 95 (95)
T ss_dssp EEE
T ss_pred EeC
Confidence 985
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.66 E-value=0.0074 Score=57.81 Aligned_cols=75 Identities=21% Similarity=0.400 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCc-ccCCHHHHHH
Q 018892 174 RDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQ-YTPSPAEIKS 252 (349)
Q Consensus 174 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~-y~~s~~E~~~ 252 (349)
+++..|++.=++=|+|||++++...+..+.. .. .+.-.+-+-+..+.+|- +.|+.+|+..
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~---------~~----------~~~~~~~~~i~kyiFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPP---------YH----------AERRSSSDFIRKYIFPGGYLPSLSEILR 203 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--HH---------HH----------HCTTCCCHHHHHHTSTTS---BHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEeccccccc---------ch----------hhcCCCceEEEEeeCCCCCCCCHHHHHH
Confidence 3566777788899999999999987765420 00 00000001122233444 6789999999
Q ss_pred HHhhCCceEEEEEEEE
Q 018892 253 EVIKEGSFTIDHLEVS 268 (349)
Q Consensus 253 ~ie~~GsF~i~~~e~~ 268 (349)
.+++.| |+|.+.+.+
T Consensus 204 ~~~~~~-l~v~~~~~~ 218 (273)
T PF02353_consen 204 AAEDAG-LEVEDVENL 218 (273)
T ss_dssp HHHHTT--EEEEEEE-
T ss_pred HHhcCC-EEEEEEEEc
Confidence 888887 888777544
No 32
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.62 E-value=0.00077 Score=64.64 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=52.8
Q ss_pred CCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCCCC
Q 018892 125 RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQD 204 (349)
Q Consensus 125 ~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~ 204 (349)
++++|+++|+.+||++.. .++..+|+.-.+-|+|||++++......+..
T Consensus 182 ~~~fD~I~~~~vl~~l~~-------------------------------~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~ 230 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNR-------------------------------ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY 230 (287)
T ss_pred cCCccEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCCCcEEEEEEecccccC
Confidence 678999999999999751 2455667777888999999776543222210
Q ss_pred CCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcC-cccCCHHHHHHHHhhCCceEEEEEE
Q 018892 205 PSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIP-QYTPSPAEIKSEVIKEGSFTIDHLE 266 (349)
Q Consensus 205 ~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P-~y~~s~~E~~~~ie~~GsF~i~~~e 266 (349)
+ ...| -+..+.+|+++.+.. |+|.+.+
T Consensus 231 ~--------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 231 P--------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred C--------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 0 1123 466789999998873 8887763
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.53 E-value=0.0012 Score=59.78 Aligned_cols=138 Identities=15% Similarity=0.198 Sum_probs=77.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCce
Q 018892 30 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 109 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~ 109 (349)
.-+|.|+||++|.+++.+.+. + .+|..-|+-.+ .-...+.. ... .+ . .+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~------------g-----~~V~gvD~S~~-~i~~a~~~------~~~-~~--~---~~- 79 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN------------G-----FDVTAWDKNPM-SIANLERI------KAA-EN--L---DN- 79 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC------------C-----CEEEEEeCCHH-HHHHHHHH------HHH-cC--C---Cc-
Confidence 468999999999999876431 1 34555554211 11111111 111 11 1 12
Q ss_pred EEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 018892 110 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 189 (349)
Q Consensus 110 f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 189 (349)
+..+.+++-.--+ ++++|+++|+.++||+.. .|...+++.=++-|+|
T Consensus 80 -v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~i~~~Lkp 126 (197)
T PRK11207 80 -LHTAVVDLNNLTF-DGEYDFILSTVVLMFLEA-------------------------------KTIPGLIANMQRCTKP 126 (197)
T ss_pred -ceEEecChhhCCc-CCCcCEEEEecchhhCCH-------------------------------HHHHHHHHHHHHHcCC
Confidence 1222234433223 467999999999999752 1234455555778999
Q ss_pred CceEEEE-ecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEE
Q 018892 190 EGRMVLT-FLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 266 (349)
Q Consensus 190 GG~mvl~-~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e 266 (349)
||++++. ++...+ .+. ..| |-+..+.+|+++.++ | |++.+.+
T Consensus 127 gG~~~~~~~~~~~~-~~~-------------------~~~------------~~~~~~~~el~~~~~--~-~~~~~~~ 169 (197)
T PRK11207 127 GGYNLIVAAMDTAD-YPC-------------------TVG------------FPFAFKEGELRRYYE--G-WEMVKYN 169 (197)
T ss_pred CcEEEEEEEecCCC-CCC-------------------CCC------------CCCccCHHHHHHHhC--C-CeEEEee
Confidence 9996554 332221 110 011 336678999999887 5 8876663
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.50 E-value=0.001 Score=57.23 Aligned_cols=107 Identities=21% Similarity=0.317 Sum_probs=62.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
+..+|.|+||++|..++.+.. +. .|..+++.-|.-.. . +..... ..++.+- .+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~-------~~-------~~~~~i~gvD~s~~-----~--i~~a~~-~~~~~~~-----~n 55 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK-------EL-------NPGAKIIGVDISEE-----M--IEYAKK-RAKELGL-----DN 55 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH-------HS-------TTTSEEEEEESSHH-----H--HHHHHH-HHHHTTS-----TT
T ss_pred CCCEEEEecCcCcHHHHHHHH-------hc-------CCCCEEEEEECcHH-----H--HHHhhc-ccccccc-----cc
Confidence 467999999999999876554 11 12466777774221 1 110011 1111221 22
Q ss_pred -eEEeecCCcccc--cccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 018892 109 -CFFTGVPGSFYG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 185 (349)
Q Consensus 109 -~f~~~vpgSFy~--rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~ 185 (349)
-|.. ++..+ +.++ +.+|+++++.++||+.. | ..+|+.=.+
T Consensus 56 i~~~~---~d~~~l~~~~~-~~~D~I~~~~~l~~~~~-~--------------------------------~~~l~~~~~ 98 (152)
T PF13847_consen 56 IEFIQ---GDIEDLPQELE-EKFDIIISNGVLHHFPD-P--------------------------------EKVLKNIIR 98 (152)
T ss_dssp EEEEE---SBTTCGCGCSS-TTEEEEEEESTGGGTSH-H--------------------------------HHHHHHHHH
T ss_pred cceEE---eehhccccccC-CCeeEEEEcCchhhccC-H--------------------------------HHHHHHHHH
Confidence 2322 44444 1144 89999999999999763 2 223344467
Q ss_pred hhccCceEEEEecc
Q 018892 186 ELVAEGRMVLTFLG 199 (349)
Q Consensus 186 EL~~GG~mvl~~~g 199 (349)
-|++||++++....
T Consensus 99 ~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 99 LLKPGGILIISDPN 112 (152)
T ss_dssp HEEEEEEEEEEEEE
T ss_pred HcCCCcEEEEEECC
Confidence 89999999988866
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.48 E-value=0.0011 Score=60.04 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=77.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCce
Q 018892 30 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 109 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~ 109 (349)
+-+|.|+||++|.+++.+... | .+|+.-|.-. ..-...+.. ... .+ . ++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~------------g-----~~V~~iD~s~-~~l~~a~~~------~~~-~~--~----~v 79 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA------------G-----YDVRAWDHNP-ASIASVLDM------KAR-EN--L----PL 79 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC------------C-----CeEEEEECCH-HHHHHHHHH------HHH-hC--C----Cc
Confidence 469999999999999876531 1 4566667532 111111111 111 11 1 11
Q ss_pred EEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 018892 110 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 189 (349)
Q Consensus 110 f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 189 (349)
- ..-+..-. .-+++++|+++|+.++||++. .++..+++.-++-|+|
T Consensus 80 ~--~~~~d~~~-~~~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~Lkp 125 (195)
T TIGR00477 80 R--TDAYDINA-AALNEDYDFIFSTVVFMFLQA-------------------------------GRVPEIIANMQAHTRP 125 (195)
T ss_pred e--eEeccchh-ccccCCCCEEEEecccccCCH-------------------------------HHHHHHHHHHHHHhCC
Confidence 1 11111111 112467999999999999752 2344556666788999
Q ss_pred CceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEE
Q 018892 190 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 266 (349)
Q Consensus 190 GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e 266 (349)
||++++...-..+..+. | . .|-|..+++|+++.++ + |++.+.+
T Consensus 126 gG~lli~~~~~~~~~~~---------------------~---------~-~~~~~~~~~el~~~f~--~-~~~~~~~ 168 (195)
T TIGR00477 126 GGYNLIVAAMDTADYPC---------------------H---------M-PFSFTFKEDELRQYYA--D-WELLKYN 168 (195)
T ss_pred CcEEEEEEecccCCCCC---------------------C---------C-CcCccCCHHHHHHHhC--C-CeEEEee
Confidence 99965543211111000 1 0 1236789999999886 3 8877765
No 36
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.32 E-value=0.0024 Score=60.76 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=31.9
Q ss_pred ccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEE
Q 018892 122 LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLT 196 (349)
Q Consensus 122 lfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 196 (349)
-+|.+++|+++|.++|||++. | +....|+.=++-|+|||.|++.
T Consensus 198 ~~~~~~fD~I~crnvl~yf~~-~------------------------------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 198 SPPLGDFDLIFCRNVLIYFDE-P------------------------------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CCccCCCCEEEechhHHhCCH-H------------------------------HHHHHHHHHHHHhCCCeEEEEE
Confidence 346889999999999999863 2 1122334446789999999863
No 37
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.29 E-value=0.0054 Score=55.88 Aligned_cols=95 Identities=13% Similarity=0.260 Sum_probs=54.5
Q ss_pred CCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCCCC
Q 018892 125 RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQD 204 (349)
Q Consensus 125 ~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~ 204 (349)
++++|+++++.++|+... | ..+|+.-.+-|+|||.+++....+...
T Consensus 110 ~~~~D~i~~~~~l~~~~~-~--------------------------------~~~l~~~~~~L~~gG~l~i~~~~~~~~- 155 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVPD-P--------------------------------QAFIRACAQLLKPGGILFFSTINRTPK- 155 (224)
T ss_pred CCCccEEEehhHHHhCCC-H--------------------------------HHHHHHHHHhcCCCcEEEEEecCCCch-
Confidence 478999999998888542 1 234555567799999998776433210
Q ss_pred CCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEE
Q 018892 205 PSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 205 ~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~ 268 (349)
......+. .++.. +.+... ......+.+.+++.+++++.| |+|..+..+
T Consensus 156 ------~~~~~~~~---~~~~~-~~~~~~----~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~~ 204 (224)
T TIGR01983 156 ------SYLLAIVG---AEYIL-RIVPKG----THDWEKFIKPSELTSWLESAG-LRVKDVKGL 204 (224)
T ss_pred ------HHHHHHHh---hhhhh-hcCCCC----cCChhhcCCHHHHHHHHHHcC-CeeeeeeeE
Confidence 11111111 01111 111110 001123458899999999998 999877644
No 38
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.28 E-value=0.0058 Score=58.93 Aligned_cols=154 Identities=15% Similarity=0.199 Sum_probs=85.4
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCC
Q 018892 28 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 107 (349)
Q Consensus 28 ~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~ 107 (349)
.+.-+|.|+||++|..++.+.+. -|..++..-|+|. ....... .... .|- ..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~---------------~p~~~~~~~D~~~-----~~~~a~~---~~~~-~gl----~~ 199 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH---------------FPELDSTILNLPG-----AIDLVNE---NAAE-KGV----AD 199 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH---------------CCCCEEEEEecHH-----HHHHHHH---HHHh-CCc----cc
Confidence 34569999999999776544332 2457777778752 2221111 1111 121 12
Q ss_pred ceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 018892 108 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 187 (349)
Q Consensus 108 ~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 187 (349)
+ +..++|+|+..-+|. .|+++.+..+|-... + +-..+|+.=++-|
T Consensus 200 r--v~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~--~-----------------------------~~~~il~~~~~~L 244 (306)
T TIGR02716 200 R--MRGIAVDIYKESYPE--ADAVLFCRILYSANE--Q-----------------------------LSTIMCKKAFDAM 244 (306)
T ss_pred e--EEEEecCccCCCCCC--CCEEEeEhhhhcCCh--H-----------------------------HHHHHHHHHHHhc
Confidence 3 345788999766776 499888888883221 1 1123344446789
Q ss_pred ccCceEEEEecccCC-CCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEE
Q 018892 188 VAEGRMVLTFLGRKS-QDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTID 263 (349)
Q Consensus 188 ~~GG~mvl~~~g~~~-~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~ 263 (349)
+|||++++.=.-.++ ..+. +..+...+..+ |... .+.-+++.+|+++++++.| |+..
T Consensus 245 ~pgG~l~i~d~~~~~~~~~~-------~~~~~~~~~~~---~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v 302 (306)
T TIGR02716 245 RSGGRLLILDMVIDDPENPN-------FDYLSHYILGA---GMPF--------SVLGFKEQARYKEILESLG-YKDV 302 (306)
T ss_pred CCCCEEEEEEeccCCCCCch-------hhHHHHHHHHc---cccc--------ccccCCCHHHHHHHHHHcC-CCee
Confidence 999999887322222 1111 12222222222 2110 1123556899999999999 8644
No 39
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.28 E-value=0.011 Score=53.89 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=24.3
Q ss_pred cCcccCCHHHHHHHHhhCCceEEEEEEEEe
Q 018892 240 IPQYTPSPAEIKSEVIKEGSFTIDHLEVSE 269 (349)
Q Consensus 240 ~P~y~~s~~E~~~~ie~~GsF~i~~~e~~~ 269 (349)
.+.+..+.+|+...++..| |++.+.+.+.
T Consensus 188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 216 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAG-FKVVRTERIS 216 (230)
T ss_pred CCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence 4567789999999999998 9988887664
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.27 E-value=0.0053 Score=58.06 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=55.9
Q ss_pred cCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceE
Q 018892 114 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM 193 (349)
Q Consensus 114 vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 193 (349)
+.|.+..--+|++++|+++|+.++||....+ ..|+.=.+-|+|||++
T Consensus 133 ~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~---------------------------------~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 133 RLGEIEALPVADNSVDVIISNCVINLSPDKE---------------------------------RVFKEAFRVLKPGGRF 179 (272)
T ss_pred EEcchhhCCCCCCceeEEEEcCcccCCCCHH---------------------------------HHHHHHHHHcCCCcEE
Confidence 3355544346788999999999999853211 1122235679999999
Q ss_pred EEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEE
Q 018892 194 VLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 266 (349)
Q Consensus 194 vl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e 266 (349)
++.-.......+ ..+...+.-. .|. .....+.+|+...+++.| |...++.
T Consensus 180 ~i~~~~~~~~~~---------~~~~~~~~~~--~~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i~ 229 (272)
T PRK11873 180 AISDVVLRGELP---------EEIRNDAELY--AGC-----------VAGALQEEEYLAMLAEAG-FVDITIQ 229 (272)
T ss_pred EEEEeeccCCCC---------HHHHHhHHHH--hcc-----------ccCCCCHHHHHHHHHHCC-CCceEEE
Confidence 986433221110 1122211111 011 112457889999999998 7766554
No 41
>PRK06922 hypothetical protein; Provisional
Probab=97.21 E-value=0.0014 Score=69.37 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=68.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCce
Q 018892 30 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 109 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~ 109 (349)
.-+|+|+||++|..+..+. +. .|..+|+.-|+..+ .+......... .+. +-.
T Consensus 419 g~rVLDIGCGTG~ls~~LA--------~~-------~P~~kVtGIDIS~~-------MLe~Ararl~~-~g~-----~ie 470 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIE--------EE-------TEDKRIYGIDISEN-------VIDTLKKKKQN-EGR-----SWN 470 (677)
T ss_pred CCEEEEeCCCCCHHHHHHH--------Hh-------CCCCEEEEEECCHH-------HHHHHHHHhhh-cCC-----CeE
Confidence 4699999999997654322 11 13477777776542 11111111111 111 112
Q ss_pred EEeecCCcccccccCCCceeEEEeccccccc-ccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 110 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL-SQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 110 f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWL-S~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
++.+-... ....||++++|++++++++||+ +.+|..-. +|. .+|...+|+.=.+-||
T Consensus 471 ~I~gDa~d-Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~------------------~f~---~edl~kiLreI~RVLK 528 (677)
T PRK06922 471 VIKGDAIN-LSSSFEKESVDTIVYSSILHELFSYIEYEGK------------------KFN---HEVIKKGLQSAYEVLK 528 (677)
T ss_pred EEEcchHh-CccccCCCCEEEEEEchHHHhhhhhcccccc------------------ccc---HHHHHHHHHHHHHHcC
Confidence 22221111 1234789999999999999975 45552210 000 2577888888889999
Q ss_pred cCceEEEE
Q 018892 189 AEGRMVLT 196 (349)
Q Consensus 189 ~GG~mvl~ 196 (349)
|||++++.
T Consensus 529 PGGrLII~ 536 (677)
T PRK06922 529 PGGRIIIR 536 (677)
T ss_pred CCcEEEEE
Confidence 99999986
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.16 E-value=0.029 Score=51.28 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=25.3
Q ss_pred CcCcccCCHHHHHHHHhhCCceEEEEEEEEe
Q 018892 239 NIPQYTPSPAEIKSEVIKEGSFTIDHLEVSE 269 (349)
Q Consensus 239 n~P~y~~s~~E~~~~ie~~GsF~i~~~e~~~ 269 (349)
..++|+++.+|+..+++..| |++...+...
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 35678899999999999999 9998887553
No 43
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.13 E-value=0.0054 Score=55.12 Aligned_cols=27 Identities=7% Similarity=-0.135 Sum_probs=23.5
Q ss_pred cccCCHHHHHHHHhhCCceEEEEEEEEe
Q 018892 242 QYTPSPAEIKSEVIKEGSFTIDHLEVSE 269 (349)
Q Consensus 242 ~y~~s~~E~~~~ie~~GsF~i~~~e~~~ 269 (349)
..+.+.+|+.+++++.| |++.....+.
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 45889999999999999 9998887763
No 44
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.10 E-value=0.0014 Score=59.62 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=74.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
..-+|.|+||++|..++.+... .|..+|+..|.-..=-..+-+. ... .+ . .+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~---------------~p~~~v~gVD~s~~~i~~a~~~-------~~~-~~--~---~~ 91 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKA---------------NPDINFIGIEVHEPGVGKALKK-------IEE-EG--L---TN 91 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHH---------------CCCccEEEEEechHHHHHHHHH-------HHH-cC--C---CC
Confidence 4678999999999988755321 1234566666322111111111 111 11 1 23
Q ss_pred eEEeecCCcc---cccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 018892 109 CFFTGVPGSF---YGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 185 (349)
Q Consensus 109 ~f~~~vpgSF---y~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~ 185 (349)
+-+ +-++. +.+.+|++++|.++++++.+|... +... . +.+...||+.=++
T Consensus 92 v~~--~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~-~~~~----~--------------------~~~~~~~l~~i~~ 144 (202)
T PRK00121 92 LRL--LCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKK-RHHK----R--------------------RLVQPEFLALYAR 144 (202)
T ss_pred EEE--EecCHHHHHHHHcCccccceEEEECCCCCCCc-cccc----c--------------------ccCCHHHHHHHHH
Confidence 222 22333 345588999999999988888653 2111 0 0123445656678
Q ss_pred hhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcch
Q 018892 186 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEE 232 (349)
Q Consensus 186 EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~ 232 (349)
-|+|||.+++.... .+.+...+..|...|+-.+
T Consensus 145 ~LkpgG~l~i~~~~--------------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 145 KLKPGGEIHFATDW--------------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred HcCCCCEEEEEcCC--------------HHHHHHHHHHHHhCccccc
Confidence 89999999987622 1335556666666675333
No 45
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.06 E-value=0.0026 Score=55.74 Aligned_cols=108 Identities=11% Similarity=0.143 Sum_probs=60.3
Q ss_pred CcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEE
Q 018892 116 GSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVL 195 (349)
Q Consensus 116 gSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl 195 (349)
|...+=-+|++++|++++++++||+.+ | ..+|+.=.+-|||||++++
T Consensus 33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d-~--------------------------------~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 33 GDAIDLPFDDCEFDAVTMGYGLRNVVD-R--------------------------------LRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred echhhCCCCCCCeeEEEecchhhcCCC-H--------------------------------HHHHHHHHHHcCcCeEEEE
Confidence 333333378899999999999999742 1 1234444678999999998
Q ss_pred EecccCCCCCCChhhhHHHHHH-HHHHHHHHhcCCcchhhhccCC-cC---cccCCHHHHHHHHhhCCceEEEEE
Q 018892 196 TFLGRKSQDPSSKECCYIWELL-ATALNNMVSEGLIEEEKVNCFN-IP---QYTPSPAEIKSEVIKEGSFTIDHL 265 (349)
Q Consensus 196 ~~~g~~~~~~~~~~~~~~~~~l-~~al~~mv~eG~i~~e~~d~fn-~P---~y~~s~~E~~~~ie~~GsF~i~~~ 265 (349)
.-.+.++.... ..++... .... ..-|.+... .+.+. +| ..+++.+|+.+.+++.| |+..+.
T Consensus 80 ~d~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~ 145 (160)
T PLN02232 80 LDFNKSNQSVT----TFMQGWMIDNVV---VPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSACH 145 (160)
T ss_pred EECCCCChHHH----HHHHHHHccchH---hhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceE
Confidence 86665432100 0111100 0000 000111111 11121 11 24789999999999999 864443
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.04 E-value=0.12 Score=49.71 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcC-cccCCHHHHH
Q 018892 173 QRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIP-QYTPSPAEIK 251 (349)
Q Consensus 173 ~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P-~y~~s~~E~~ 251 (349)
.+-+..|++.=.+-|+|||+|++-..+....... . . ..-.+.+.+| -+.||..++.
T Consensus 152 ~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~---------~-------------~~~i~~yiFPgG~lPs~~~i~ 208 (283)
T COG2230 152 KENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-R---------F-------------PDFIDKYIFPGGELPSISEIL 208 (283)
T ss_pred cccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-c---------c-------------hHHHHHhCCCCCcCCCHHHHH
Confidence 3567778888899999999999998877653110 0 0 0012223333 3678999999
Q ss_pred HHHhhCCceEEEEEEEE
Q 018892 252 SEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 252 ~~ie~~GsF~i~~~e~~ 268 (349)
...++.| |.+...+.+
T Consensus 209 ~~~~~~~-~~v~~~~~~ 224 (283)
T COG2230 209 ELASEAG-FVVLDVESL 224 (283)
T ss_pred HHHHhcC-cEEehHhhh
Confidence 9999898 877665544
No 47
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.00 E-value=0.0011 Score=61.69 Aligned_cols=92 Identities=28% Similarity=0.520 Sum_probs=67.3
Q ss_pred cCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCC
Q 018892 123 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS 202 (349)
Q Consensus 123 fP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~ 202 (349)
|-+||+|++.||.++||....|.... ++ ..-|||.|.|+..++|-+.
T Consensus 133 f~ens~DLiisSlslHW~NdLPg~m~--------------------------------~c-k~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 133 FKENSVDLIISSLSLHWTNDLPGSMI--------------------------------QC-KLALKPDGLFIASMLGGDT 179 (325)
T ss_pred ccccchhhhhhhhhhhhhccCchHHH--------------------------------HH-HHhcCCCccchhHHhcccc
Confidence 78999999999999999999885432 11 5679999999999988653
Q ss_pred CCCCChhhhHHHHH-HHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEE
Q 018892 203 QDPSSKECCYIWEL-LATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHL 265 (349)
Q Consensus 203 ~~~~~~~~~~~~~~-l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~ 265 (349)
++++ .+.-|.+|-.||-||+- .-| +-...++-.++..+| |....+
T Consensus 180 ----------LyELR~slqLAelER~GGiSph-----iSP--f~qvrDiG~LL~rAG-F~m~tv 225 (325)
T KOG2940|consen 180 ----------LYELRCSLQLAELEREGGISPH-----ISP--FTQVRDIGNLLTRAG-FSMLTV 225 (325)
T ss_pred ----------HHHHHHHhhHHHHHhccCCCCC-----cCh--hhhhhhhhhHHhhcC-ccccee
Confidence 3443 45667899999987753 122 224567777888898 765444
No 48
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.92 E-value=0.011 Score=54.35 Aligned_cols=95 Identities=13% Similarity=0.224 Sum_probs=56.0
Q ss_pred CCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCCC
Q 018892 124 PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQ 203 (349)
Q Consensus 124 P~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~ 203 (349)
+.+.+|+++++..+++... | ..+|+.-.+-|+|||+|++...++...
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~-~--------------------------------~~~l~~~~~~L~~gG~l~v~~~~~~~~ 157 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPD-P--------------------------------ASFVRACAKLVKPGGLVFFSTLNRNLK 157 (233)
T ss_pred cCCCccEEEEhhHhhccCC-H--------------------------------HHHHHHHHHHcCCCcEEEEEecCCChH
Confidence 5578999999988887532 1 134555567789999999887653211
Q ss_pred CCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEE
Q 018892 204 DPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEV 267 (349)
Q Consensus 204 ~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~ 267 (349)
........ .+.+..+. .. .......+.+.+|+.+++++.| |++.+...
T Consensus 158 -------~~~~~~~~---~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~ 205 (233)
T PRK05134 158 -------SYLLAIVG---AEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LEVQDITG 205 (233)
T ss_pred -------HHHHHHhh---HHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-CeEeeeee
Confidence 01111111 11111111 10 0011234678999999999999 98877753
No 49
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.91 E-value=0.0017 Score=59.17 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=62.5
Q ss_pred HHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHh
Q 018892 8 ISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRS 87 (349)
Q Consensus 8 ~~~~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~ 87 (349)
+....+.+.+|+.-+ ++-++.|+||+.|+||+.+.+. | +.|.--|.-..-...+-+.
T Consensus 15 ~~~~hs~v~~a~~~~------~~g~~LDlgcG~GRNalyLA~~------------G-----~~VtAvD~s~~al~~l~~~ 71 (192)
T PF03848_consen 15 LTPTHSEVLEAVPLL------KPGKALDLGCGEGRNALYLASQ------------G-----FDVTAVDISPVALEKLQRL 71 (192)
T ss_dssp B----HHHHHHCTTS-------SSEEEEES-TTSHHHHHHHHT------------T------EEEEEESSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHhhc------CCCcEEEcCCCCcHHHHHHHHC------------C-----CeEEEEECCHHHHHHHHHH
Confidence 345566666665322 3469999999999999977642 2 4555555433222222111
Q ss_pred hHhhHHHHHHhhCCCCCCCCceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHH
Q 018892 88 LASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTA 167 (349)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~a 167 (349)
..+.+ -++ ...-..+-+.-+| ...|+++|...+|.|.. +.
T Consensus 72 --------a~~~~------l~i--~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~--~~--------------------- 111 (192)
T PF03848_consen 72 --------AEEEG------LDI--RTRVADLNDFDFP-EEYDFIVSTVVFMFLQR--EL--------------------- 111 (192)
T ss_dssp --------HHHTT-------TE--EEEE-BGCCBS-T-TTEEEEEEESSGGGS-G--GG---------------------
T ss_pred --------HhhcC------cee--EEEEecchhcccc-CCcCEEEEEEEeccCCH--HH---------------------
Confidence 11111 011 1111222222333 57899999999999873 21
Q ss_pred HHHHHHHHHHHHHHHhhHhhccCceEEEEe
Q 018892 168 YYEQFQRDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 168 y~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
+..+++.-.+.++|||.+++..
T Consensus 112 --------~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 112 --------RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp --------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred --------HHHHHHHHHhhcCCcEEEEEEE
Confidence 2334556678899999988854
No 50
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.89 E-value=0.0069 Score=58.58 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhH
Q 018892 13 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ 92 (349)
Q Consensus 13 ~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~ 92 (349)
.+|++...++.... +...+|+|+||++|.-|..+++.... ..+|+--|+... + |....
T Consensus 48 ~il~~~~~~ia~~~-~~~~~iLELGcGtG~~t~~Ll~~l~~--------------~~~~~~iDiS~~-m------L~~a~ 105 (301)
T TIGR03438 48 AILERHADEIAAAT-GAGCELVELGSGSSRKTRLLLDALRQ--------------PARYVPIDISAD-A------LKESA 105 (301)
T ss_pred HHHHHHHHHHHHhh-CCCCeEEecCCCcchhHHHHHHhhcc--------------CCeEEEEECCHH-H------HHHHH
Confidence 45565555554322 23468999999999988876655311 145555564321 1 11111
Q ss_pred HHHHHhhCCCCCCCCceEEeecCCcccccc-cCCC----ceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHH
Q 018892 93 KILRKQLGSASGAAGQCFFTGVPGSFYGRL-FPRN----SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTA 167 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~rl-fP~~----Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~a 167 (349)
+.+... + +.+=+.++-|.|.+.+ +|.. ...++++..++|+++ |
T Consensus 106 ~~l~~~----~---p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~----------------------- 153 (301)
T TIGR03438 106 AALAAD----Y---PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT--P----------------------- 153 (301)
T ss_pred HHHHhh----C---CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCC--H-----------------------
Confidence 111111 1 2333445667777532 3332 456677777888875 2
Q ss_pred HHHHHHHHHHHHHHHhhHhhccCceEEEEecccCC
Q 018892 168 YYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS 202 (349)
Q Consensus 168 y~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~ 202 (349)
.|..+||+.=++-|+|||+|++.+-...+
T Consensus 154 ------~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 154 ------EEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred ------HHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 23456777777889999999987754443
No 51
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.88 E-value=0.0073 Score=57.19 Aligned_cols=176 Identities=15% Similarity=0.162 Sum_probs=94.7
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCC
Q 018892 28 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 107 (349)
Q Consensus 28 ~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~ 107 (349)
+..+++.|.+|.+|-.++.++..+-+.-. ..+ =+|.-. |+|.= .|.-.+++-.+ .+-+. .
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~-------~~~--~~V~v~-----Dinp~--mL~vgkqRa~~-~~l~~---~ 158 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFG-------DRE--SKVTVL-----DINPH--MLAVGKQRAKK-RPLKA---S 158 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccC-------CCC--ceEEEE-----eCCHH--HHHHHHHHHhh-cCCCc---C
Confidence 35699999999999999987665443322 122 333333 44431 11111111111 11110 1
Q ss_pred ceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 018892 108 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 187 (349)
Q Consensus 108 ~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 187 (349)
+++. -+.|.=-.==||++|+|...+++.+--..+++. ...+|| +-|
T Consensus 159 ~~~~-w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k-----------------~l~EAY----------------RVL 204 (296)
T KOG1540|consen 159 SRVE-WVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK-----------------ALREAY----------------RVL 204 (296)
T ss_pred CceE-EEeCCcccCCCCCCcceeEEEecceecCCCHHH-----------------HHHHHH----------------Hhc
Confidence 1111 122333333399999999999998876554332 234555 479
Q ss_pred ccCceEEEEecccCCCCCCCh-hhhHHHH---HHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEE
Q 018892 188 VAEGRMVLTFLGRKSQDPSSK-ECCYIWE---LLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTID 263 (349)
Q Consensus 188 ~~GG~mvl~~~g~~~~~~~~~-~~~~~~~---~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~ 263 (349)
||||++.|.-+..-+..+... -..+.++ .+.+.+....+.+.+=-|-+. -+|+.||+...|+++| |...
T Consensus 205 KpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG-F~~~ 277 (296)
T KOG1540|consen 205 KPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG-FSSV 277 (296)
T ss_pred CCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC-Cccc
Confidence 999999988777665311100 0011112 234444444333322222222 3689999999999999 8765
Q ss_pred E
Q 018892 264 H 264 (349)
Q Consensus 264 ~ 264 (349)
.
T Consensus 278 ~ 278 (296)
T KOG1540|consen 278 N 278 (296)
T ss_pred c
Confidence 4
No 52
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.88 E-value=0.00099 Score=52.92 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=45.4
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceEEee
Q 018892 34 ADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTG 113 (349)
Q Consensus 34 aD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 113 (349)
.|+||++|..+..++... |..+++..|.-.+=....=+.+... ... ..-.+..
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~~l~~a~~~~~~~-------~~~-----~~~~~~~ 53 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPSMLERARERLAEL-------GND-----NFERLRF 53 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSSTTSTTCCCHHHC-------T--------EEEEE-
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHHHHHHHHHHhhhc-------CCc-----ceeEEEe
Confidence 489999999987665432 4577777775443221111111110 000 1123333
Q ss_pred cCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceE
Q 018892 114 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM 193 (349)
Q Consensus 114 vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 193 (349)
..........+ +++|+++++.+|||+. |+..+|+.=++-|+|||++
T Consensus 54 ~~~~~~~~~~~-~~fD~V~~~~vl~~l~---------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 54 DVLDLFDYDPP-ESFDLVVASNVLHHLE---------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -SSS---CCC-----SEEEEE-TTS--S----------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred ecCChhhcccc-cccceehhhhhHhhhh---------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 33333333222 8999999999999982 2234455557889999986
No 53
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.86 E-value=0.0037 Score=63.99 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=35.1
Q ss_pred cCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEE
Q 018892 123 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLT 196 (349)
Q Consensus 123 fP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~ 196 (349)
+|++++|+++|+.++||++. .++..+|+.-.+-|+|||+|++.
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~-------------------------------~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD-------------------------------KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH-------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 68899999999999999862 13456677778889999999875
No 54
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.79 E-value=0.028 Score=52.83 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=35.6
Q ss_pred CCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCC
Q 018892 124 PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS 202 (349)
Q Consensus 124 P~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~ 202 (349)
+++|||++.+.-|+||. |+.+|.+.=.+-|++.|.+++...=+++
T Consensus 97 ~e~SVDlI~~Aqa~HWF----------------------------------dle~fy~~~~rvLRk~Gg~iavW~Y~dd 141 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWF----------------------------------DLERFYKEAYRVLRKDGGLIAVWNYNDD 141 (261)
T ss_pred CCcceeeehhhhhHHhh----------------------------------chHHHHHHHHHHcCCCCCEEEEEEccCC
Confidence 49999999999999994 3456666778889998877777765544
No 55
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.76 E-value=0.0048 Score=55.42 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=28.5
Q ss_pred hHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcC
Q 018892 184 SEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIP 241 (349)
Q Consensus 184 a~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P 241 (349)
.+=|+|||++++... ... ..-+..+...|..+|+ .+.+.++++.|
T Consensus 129 ~~~LkpgG~lvi~~~-~~~-----------~~~~~~~~e~~~~~~~-~~~~~~~~~~~ 173 (181)
T TIGR00138 129 LNLLKVGGYFLAYKG-KKY-----------LDEIEEAKRKCQVLGV-EPLEVPPLTGP 173 (181)
T ss_pred HHhcCCCCEEEEEcC-CCc-----------HHHHHHHHHhhhhcCc-eEeeccccCCC
Confidence 455999999998752 111 1234455566677785 44557788887
No 56
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.59 E-value=0.018 Score=52.77 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=36.5
Q ss_pred cCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecc
Q 018892 123 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG 199 (349)
Q Consensus 123 fP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 199 (349)
+++.++|+++|+.+.||.. .|. .+ .. .+ .......|+.=.+-|+|||+|++....
T Consensus 113 ~~~~~~D~V~S~~~~~~~g-~~~--~d-------------~~-----~~-~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSG-TPA--VD-------------IP-----RA-MYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred hCCCCCCEEecCCCCccCC-ChH--HH-------------HH-----HH-HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 5778999999999999944 121 00 00 00 111346677778899999999996543
No 57
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.31 E-value=0.046 Score=53.13 Aligned_cols=146 Identities=23% Similarity=0.262 Sum_probs=93.7
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceE
Q 018892 31 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 110 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f 110 (349)
-+|+|+||..|.-++.+.. .| | =.|+--| |+=.|..=|+.+..+. |.+ ..+|
T Consensus 117 k~VLDIGC~nGY~~frM~~------------~G---A-~~ViGiD-P~~lf~~QF~~i~~~l-------g~~----~~~~ 168 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLG------------RG---A-KSVIGID-PSPLFYLQFEAIKHFL-------GQD----PPVF 168 (315)
T ss_pred CEEEEecCCCcHHHHHHhh------------cC---C-CEEEEEC-CChHHHHHHHHHHHHh-------CCC----ccEE
Confidence 4899999999998874431 12 2 3455556 6666777677665442 211 3444
Q ss_pred EeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 018892 111 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 190 (349)
Q Consensus 111 ~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G 190 (349)
.. |-+.+ .|=+.+++|.|||.-.|=-++ +|-.. |+.=.+-|++|
T Consensus 169 ~l--plgvE-~Lp~~~~FDtVF~MGVLYHrr------------------~Pl~~---------------L~~Lk~~L~~g 212 (315)
T PF08003_consen 169 EL--PLGVE-DLPNLGAFDTVFSMGVLYHRR------------------SPLDH---------------LKQLKDSLRPG 212 (315)
T ss_pred Ec--Ccchh-hccccCCcCEEEEeeehhccC------------------CHHHH---------------HHHHHHhhCCC
Confidence 43 32222 232367899999976665444 23322 22335679999
Q ss_pred ceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEE
Q 018892 191 GRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTI 262 (349)
Q Consensus 191 G~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i 262 (349)
|.|||..+..+.... .-++.++.+..|+-=|+.||..-++..+++.| |+-
T Consensus 213 GeLvLETlvi~g~~~---------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~ 262 (315)
T PF08003_consen 213 GELVLETLVIDGDEN---------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKD 262 (315)
T ss_pred CEEEEEEeeecCCCc---------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-Cce
Confidence 999999876554311 02455566777888888999999999999999 753
No 58
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.21 E-value=0.025 Score=55.89 Aligned_cols=105 Identities=15% Similarity=0.279 Sum_probs=61.9
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceEE
Q 018892 32 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF 111 (349)
Q Consensus 32 ~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f~ 111 (349)
+|+|+||++|..++.+. +. .|..+|...|.-. ..| ..-...+.. .+ . ...+
T Consensus 199 ~VLDlGCG~G~ls~~la--------~~-------~p~~~v~~vDis~---~Al----~~A~~nl~~-n~--l--~~~~-- 249 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLA--------RH-------SPKIRLTLSDVSA---AAL----ESSRATLAA-NG--L--EGEV-- 249 (342)
T ss_pred eEEEeccCcCHHHHHHH--------Hh-------CCCCEEEEEECCH---HHH----HHHHHHHHH-cC--C--CCEE--
Confidence 79999999998655322 11 2457788888632 121 111111211 11 1 0112
Q ss_pred eecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCc
Q 018892 112 TGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEG 191 (349)
Q Consensus 112 ~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 191 (349)
+++..+.. .++++|+++|+-.+||.-.. . ..+...|++.=++-|+|||
T Consensus 250 --~~~D~~~~--~~~~fDlIvsNPPFH~g~~~-----------------~-----------~~~~~~~i~~a~~~LkpgG 297 (342)
T PRK09489 250 --FASNVFSD--IKGRFDMIISNPPFHDGIQT-----------------S-----------LDAAQTLIRGAVRHLNSGG 297 (342)
T ss_pred --EEcccccc--cCCCccEEEECCCccCCccc-----------------c-----------HHHHHHHHHHHHHhcCcCC
Confidence 33444543 36789999999999973210 0 1245567777788899999
Q ss_pred eEEEEe
Q 018892 192 RMVLTF 197 (349)
Q Consensus 192 ~mvl~~ 197 (349)
.|+++.
T Consensus 298 ~L~iVa 303 (342)
T PRK09489 298 ELRIVA 303 (342)
T ss_pred EEEEEE
Confidence 998875
No 59
>PRK05785 hypothetical protein; Provisional
Probab=96.19 E-value=0.048 Score=50.57 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=21.3
Q ss_pred CcccccccCCCceeEEEeccccccccc
Q 018892 116 GSFYGRLFPRNSVHLFHSSYSLQWLSQ 142 (349)
Q Consensus 116 gSFy~rlfP~~Svh~~~Ss~alHWLS~ 142 (349)
+++-.-=||++|+|.++|+++|||+..
T Consensus 99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 99 GSFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred echhhCCCCCCCEEEEEecChhhccCC
Confidence 444444478999999999999999763
No 60
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.15 E-value=0.031 Score=42.36 Aligned_cols=102 Identities=25% Similarity=0.258 Sum_probs=57.0
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceEE
Q 018892 32 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF 111 (349)
Q Consensus 32 ~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f~ 111 (349)
+|+|+||+.|.++..+.. .+...++..|+..+-....-+. ....+. .++-+
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~--------~~~~~~-----~~~~~ 51 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKA--------AAALLA-----DNVEV 51 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHH--------Hhcccc-----cceEE
Confidence 589999999987665432 1235667777644332222110 000010 12221
Q ss_pred eecCCcccccc-cCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 018892 112 TGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 190 (349)
Q Consensus 112 ~~vpgSFy~rl-fP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G 190 (349)
+-+++.... .+.+++|+++.+..+++.+ .+...+++.-.+-++||
T Consensus 52 --~~~~~~~~~~~~~~~~d~i~~~~~~~~~~--------------------------------~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 52 --LKGDAEELPPEADESFDVIISDPPLHHLV--------------------------------EDLARFLEEARRLLKPG 97 (107)
T ss_pred --EEcChhhhccccCCceEEEEEccceeehh--------------------------------hHHHHHHHHHHHHcCCC
Confidence 123333333 3667899999999888861 12334444555667999
Q ss_pred ceEEEE
Q 018892 191 GRMVLT 196 (349)
Q Consensus 191 G~mvl~ 196 (349)
|.+++.
T Consensus 98 g~~~~~ 103 (107)
T cd02440 98 GVLVLT 103 (107)
T ss_pred CEEEEE
Confidence 999876
No 61
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.07 E-value=0.41 Score=46.90 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=22.6
Q ss_pred cccCCHHHHHHHHhhCCceEEEEEEEEe
Q 018892 242 QYTPSPAEIKSEVIKEGSFTIDHLEVSE 269 (349)
Q Consensus 242 ~y~~s~~E~~~~ie~~GsF~i~~~e~~~ 269 (349)
.|+.+.+|++..+++.| |+|.+.+...
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 46779999999999999 9998776553
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.01 E-value=0.051 Score=54.52 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=61.8
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceE
Q 018892 31 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 110 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f 110 (349)
-+|+|+||++|.-++.+. +. .|..+|+.-|... ..+..-............ .+
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~-------~P~~~V~~vD~S~-------~Av~~A~~N~~~n~~~~~---~~-- 282 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESP-------MAVASSRLNVETNMPEAL---DR-- 282 (378)
T ss_pred CeEEEEeccccHHHHHHH--------Hh-------CCCCEEEEEECCH-------HHHHHHHHHHHHcCcccC---ce--
Confidence 389999999998655322 21 2568899998632 122211111211111000 11
Q ss_pred EeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 018892 111 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 190 (349)
Q Consensus 111 ~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G 190 (349)
+..+.+..+..+ ++.++|+++|+--+|+.-.++ ... ..++++.=.+-|+||
T Consensus 283 v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~-----------------~~i-----------a~~l~~~a~~~LkpG 333 (378)
T PRK15001 283 CEFMINNALSGV-EPFRFNAVLCNPPFHQQHALT-----------------DNV-----------AWEMFHHARRCLKIN 333 (378)
T ss_pred EEEEEccccccC-CCCCEEEEEECcCcccCccCC-----------------HHH-----------HHHHHHHHHHhcccC
Confidence 122334455543 667899999998888743211 111 112343335679999
Q ss_pred ceEEEEe
Q 018892 191 GRMVLTF 197 (349)
Q Consensus 191 G~mvl~~ 197 (349)
|.++++.
T Consensus 334 G~L~iV~ 340 (378)
T PRK15001 334 GELYIVA 340 (378)
T ss_pred CEEEEEE
Confidence 9999885
No 63
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=95.94 E-value=0.052 Score=51.54 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=15.8
Q ss_pred CceEEEeecCCCCcccHHHH
Q 018892 29 TKVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~ 48 (349)
..-+|.|+||++|..+..+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~ 104 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALA 104 (272)
T ss_pred CCCeEEEECCcCCHHHHHHH
Confidence 34679999999998776554
No 64
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=95.93 E-value=0.045 Score=50.06 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=59.8
Q ss_pred CCceEEEeecCCCCcccHHHH------------HHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHH
Q 018892 28 PTKVAIADLGCSSGPNTLLVA------------SELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKIL 95 (349)
Q Consensus 28 ~~~~~iaD~Gcs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~ 95 (349)
+.--++.|+|||.|-.|..+. ...|+.-+++++ ..|.+++..-|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dv------------------- 98 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADV------------------- 98 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-T-------------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcC-------------------
Confidence 456778999999999987653 455555555542 234455555553
Q ss_pred HHhhCCCCCCCCceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHH
Q 018892 96 RKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRD 175 (349)
Q Consensus 96 ~~~~~~~~~~~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D 175 (349)
|. ..|..++|+++-|-.+++|+. ..|
T Consensus 99 -------------------p~-----~~P~~~FDLIV~SEVlYYL~~------------------------------~~~ 124 (201)
T PF05401_consen 99 -------------------PE-----FWPEGRFDLIVLSEVLYYLDD------------------------------AED 124 (201)
T ss_dssp -------------------TT--------SS-EEEEEEES-GGGSSS------------------------------HHH
T ss_pred -------------------CC-----CCCCCCeeEEEEehHhHcCCC------------------------------HHH
Confidence 33 248889999999999999983 235
Q ss_pred HHHHHHHhhHhhccCceEEEEe
Q 018892 176 FSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 176 ~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
+..++..=.+-|.|||.||+.-
T Consensus 125 L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 125 LRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEE
Confidence 6666667778899999999854
No 65
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.87 E-value=0.14 Score=48.19 Aligned_cols=185 Identities=17% Similarity=0.189 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHh
Q 018892 11 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS 90 (349)
Q Consensus 11 ~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~ 90 (349)
-..+|.+...++..-....+-+|...||+.|.+.+.+++ ..+.|.+.||..|--.|- -.+
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~-------------~~~n~~l~v~acDfsp~A-----i~~-- 112 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLK-------------TSPNNRLKVYACDFSPRA-----IEL-- 112 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhh-------------cCCCCCeEEEEcCCChHH-----HHH--
Confidence 456777777776543222334999999999766655442 124455999998844332 211
Q ss_pred hHHHHHHhhCCCCCCCCceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHH
Q 018892 91 FQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYE 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~ 170 (349)
++++.+.+. .--..|+.-.-++=-..-++.+|+|++.--+. ||-+|+.-
T Consensus 113 ----vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pek----------------------- 161 (264)
T KOG2361|consen 113 ----VKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPEK----------------------- 161 (264)
T ss_pred ----HHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEE---EeccChHH-----------------------
Confidence 111101000 00012222222222334445555555433332 23333221
Q ss_pred HHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhc-cCCcCcccCCHHH
Q 018892 171 QFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVN-CFNIPQYTPSPAE 249 (349)
Q Consensus 171 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d-~fn~P~y~~s~~E 249 (349)
+.+=++.=.+=|||||.+++-=-|+.+- ..+.-- .+-.|++..+- .=-.+.|+.+.+|
T Consensus 162 -----~~~a~~nl~~llKPGG~llfrDYg~~Dl-----------aqlRF~-----~~~~i~~nfYVRgDGT~~YfF~~ee 220 (264)
T KOG2361|consen 162 -----MQSVIKNLRTLLKPGGSLLFRDYGRYDL-----------AQLRFK-----KGQCISENFYVRGDGTRAYFFTEEE 220 (264)
T ss_pred -----HHHHHHHHHHHhCCCcEEEEeecccchH-----------HHHhcc-----CCceeecceEEccCCceeeeccHHH
Confidence 1111223356689999999887776652 111111 22223322211 1135889999999
Q ss_pred HHHHHhhCCceEEEEEEEE
Q 018892 250 IKSEVIKEGSFTIDHLEVS 268 (349)
Q Consensus 250 ~~~~ie~~GsF~i~~~e~~ 268 (349)
++.++.++| |...++++-
T Consensus 221 L~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 221 LDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred HHHHHHhcc-cchhcccce
Confidence 999999998 887777654
No 66
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.79 E-value=0.04 Score=50.87 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=66.1
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
...+|.|+||++|..++.+... .|..+|+..|.-..= .+.... .... .+ . .+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~---------------~~~~~v~~iD~~~~~----~~~a~~---~~~~-~~--~---~~ 138 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKE---------------RPDARVTAVDISPEA----LAVARK---NAAR-LG--L---DN 138 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHH---------------CCCCEEEEEECCHHH----HHHHHH---HHHH-cC--C---Ce
Confidence 3468999999999887765432 133567777732111 111111 1111 11 1 22
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
+.-+.+.+.. .+|++++|+++|+--.+..+. +..+.. .+ ..-.|..... -......++..|++.=.+-|+
T Consensus 139 --~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~-~~~~~~---~~--~~~e~~~~~~-~~~~~~~~~~~~i~~~~~~L~ 208 (251)
T TIGR03534 139 --VTFLQSDWFE-PLPGGKFDLIVSNPPYIPEAD-IHLLDP---EV--RFHEPRLALF-GGEDGLDFYRRIIAQAPRLLK 208 (251)
T ss_pred --EEEEECchhc-cCcCCceeEEEECCCCCchhh-hhhcCh---hh--hhcCCHHHHc-CCCcHHHHHHHHHHHHHHhcc
Confidence 2224456655 467899999999644443221 111100 00 0000000000 011123556778888788999
Q ss_pred cCceEEEEe
Q 018892 189 AEGRMVLTF 197 (349)
Q Consensus 189 ~GG~mvl~~ 197 (349)
|||.+++..
T Consensus 209 ~gG~~~~~~ 217 (251)
T TIGR03534 209 PGGWLLLEI 217 (251)
T ss_pred cCCEEEEEE
Confidence 999998865
No 67
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.74 E-value=0.063 Score=48.83 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.3
Q ss_pred CceEEEeecCCCCcccHH
Q 018892 29 TKVAIADLGCSSGPNTLL 46 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~ 46 (349)
...+|.|+||++|..|..
T Consensus 78 ~~~~VLeiG~GsG~~t~~ 95 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAV 95 (212)
T ss_pred CCCEEEEECCCccHHHHH
Confidence 457999999999998863
No 68
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.73 E-value=0.017 Score=46.94 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=17.8
Q ss_pred HHHHHHhhHhhccCceEEEEe
Q 018892 177 SLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 177 ~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
..+++.=.+.|+|||++++.+
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 366777789999999999986
No 69
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.68 E-value=0.16 Score=44.95 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=40.5
Q ss_pred cCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceE
Q 018892 114 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM 193 (349)
Q Consensus 114 vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 193 (349)
+-++.+..+ .+++|+++|+..+|.....+.. ++..++-.... + .-...+..||+.=.+-|+|||++
T Consensus 71 ~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~--~~~~~~~~~~~-~---------~~~~~~~~~l~~~~~~Lk~gG~~ 136 (179)
T TIGR00537 71 VMTDLFKGV--RGKFDVILFNPPYLPLEDDLRR--GDWLDVAIDGG-K---------DGRKVIDRFLDELPEILKEGGRV 136 (179)
T ss_pred EEccccccc--CCcccEEEECCCCCCCcchhcc--cchhhhhhhcC-C---------chHHHHHHHHHhHHHhhCCCCEE
Confidence 446666533 4589999999988866532211 00000000000 0 00122456777777889999999
Q ss_pred EEEeccc
Q 018892 194 VLTFLGR 200 (349)
Q Consensus 194 vl~~~g~ 200 (349)
++...+.
T Consensus 137 ~~~~~~~ 143 (179)
T TIGR00537 137 QLIQSSL 143 (179)
T ss_pred EEEEecc
Confidence 9877443
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.63 E-value=0.093 Score=50.43 Aligned_cols=140 Identities=18% Similarity=0.207 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhH
Q 018892 13 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ 92 (349)
Q Consensus 13 ~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~ 92 (349)
.++++++..... ..++.+|+|+||++|..++.+... .|..+|+..|.-.. .+ +...
T Consensus 107 ~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~~~la~~---------------~~~~~v~avDis~~---al-~~A~--- 162 (284)
T TIGR03533 107 ELIEDGFAPWLE--PEPVKRILDLCTGSGCIAIACAYA---------------FPEAEVDAVDISPD---AL-AVAE--- 162 (284)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEEeCchhHHHHHHHHH---------------CCCCEEEEEECCHH---HH-HHHH---
Confidence 455555544321 123468999999999988765432 13466777664211 11 0000
Q ss_pred HHHHHhhCCCCCCCCceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHH----HHH
Q 018892 93 KILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVL----TAY 168 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~----~ay 168 (349)
..... .+- ..++ .-+-++++.. +|++++|+++|+ |+.+..+. + . .-++++. .|.
T Consensus 163 ~n~~~-~~~----~~~i--~~~~~D~~~~-~~~~~fD~Iv~N---------PPy~~~~~--~--~-~l~~~~~~ep~~al 220 (284)
T TIGR03533 163 INIER-HGL----EDRV--TLIQSDLFAA-LPGRKYDLIVSN---------PPYVDAED--M--A-DLPAEYHHEPELAL 220 (284)
T ss_pred HHHHH-cCC----CCcE--EEEECchhhc-cCCCCccEEEEC---------CCCCCccc--h--h-hCCHhhhcCHHHHh
Confidence 11111 111 0122 1233555544 377789999986 44432210 0 0 0011110 000
Q ss_pred -H-HHHHHHHHHHHHHhhHhhccCceEEEEec
Q 018892 169 -Y-EQFQRDFSLFLKCRSEELVAEGRMVLTFL 198 (349)
Q Consensus 169 -~-~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 198 (349)
. ..--.....|++.=.+-|+|||++++.+.
T Consensus 221 ~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 221 ASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred cCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 00113345677777888999999998874
No 71
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.60 E-value=0.013 Score=46.86 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=51.9
Q ss_pred EEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceEEe
Q 018892 33 IADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFT 112 (349)
Q Consensus 33 iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f~~ 112 (349)
|.|+||++|.++..+.... + ..|+.++..-|+-.+=. ....+.... .+- +--|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-----~-------~~~~~~~~gvD~s~~~l-------~~~~~~~~~-~~~-----~~~~~~ 55 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-----D-------AGPSSRVIGVDISPEML-------ELAKKRFSE-DGP-----KVRFVQ 55 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-HHHH-------HHHHHHSHH-TTT-----TSEEEE
T ss_pred CEEeecCCcHHHHHHHHHh-----h-------hcccceEEEEECCHHHH-------HHHHHhchh-cCC-----ceEEEE
Confidence 7899999999988666542 1 11346666666422111 101111111 111 112333
Q ss_pred ecCCcccccccCCCceeEEEeccc-ccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCc
Q 018892 113 GVPGSFYGRLFPRNSVHLFHSSYS-LQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEG 191 (349)
Q Consensus 113 ~vpgSFy~rlfP~~Svh~~~Ss~a-lHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 191 (349)
+=... . -++.+++|+++++.+ +|++++ +++..+|+.=++=|+|||
T Consensus 56 ~D~~~-l--~~~~~~~D~v~~~~~~~~~~~~-------------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 56 ADARD-L--PFSDGKFDLVVCSGLSLHHLSP-------------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SCTTC-H--HHHSSSEEEEEE-TTGGGGSSH-------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred CCHhH-C--cccCCCeeEEEEcCCccCCCCH-------------------------------HHHHHHHHHHHHHhCCCC
Confidence 32222 1 246779999999766 998772 345566667778888887
No 72
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.37 E-value=0.18 Score=44.40 Aligned_cols=122 Identities=19% Similarity=0.213 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHh
Q 018892 11 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS 90 (349)
Q Consensus 11 ~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~ 90 (349)
+..+|-+.+... ..-+|+|+||++|.-++.+.. ..|...|...|.-.+=....=++
T Consensus 19 ~t~lL~~~l~~~------~~~~vLDlG~G~G~i~~~la~---------------~~~~~~v~~vDi~~~a~~~a~~n--- 74 (170)
T PF05175_consen 19 GTRLLLDNLPKH------KGGRVLDLGCGSGVISLALAK---------------RGPDAKVTAVDINPDALELAKRN--- 74 (170)
T ss_dssp HHHHHHHHHHHH------TTCEEEEETSTTSHHHHHHHH---------------TSTCEEEEEEESBHHHHHHHHHH---
T ss_pred HHHHHHHHHhhc------cCCeEEEecCChHHHHHHHHH---------------hCCCCEEEEEcCCHHHHHHHHHH---
Confidence 334555555433 346799999999988875532 12456788887542221111111
Q ss_pred hHHHHHHhhCCCCCCCCceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHH
Q 018892 91 FQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYE 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~ 170 (349)
... .+ . .+ +..+....+..+- +.++|+++|+-=+|+-. ...
T Consensus 75 ----~~~-n~--~---~~--v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~--------------------~~~------ 115 (170)
T PF05175_consen 75 ----AER-NG--L---EN--VEVVQSDLFEALP-DGKFDLIVSNPPFHAGG--------------------DDG------ 115 (170)
T ss_dssp ----HHH-TT--C---TT--EEEEESSTTTTCC-TTCEEEEEE---SBTTS--------------------HCH------
T ss_pred ----HHh-cC--c---cc--ccccccccccccc-ccceeEEEEccchhccc--------------------ccc------
Confidence 111 11 1 23 4455677777654 88999999974433311 100
Q ss_pred HHHHHHHHHHHHhhHhhccCceEEEEe
Q 018892 171 QFQRDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 171 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
..-+..|++.=.+-|+|||.+++..
T Consensus 116 --~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 116 --LDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp --HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --hhhHHHHHHHHHHhccCCCEEEEEe
Confidence 1123445555578899999998866
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=95.30 E-value=0.71 Score=42.66 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHH
Q 018892 11 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 11 ~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
..|.|.+-+..+.. +..-+|.|.||+.|.|++.+.+
T Consensus 22 p~~~L~~~~~~~~~---~~~~rvL~~gCG~G~da~~LA~ 57 (218)
T PRK13255 22 VNPLLQKYWPALAL---PAGSRVLVPLCGKSLDMLWLAE 57 (218)
T ss_pred CCHHHHHHHHhhCC---CCCCeEEEeCCCChHhHHHHHh
Confidence 44566665544321 2335999999999999997764
No 74
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.24 E-value=0.12 Score=49.01 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCceEEEeecCCCCcccHHHHHHH--------------HHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHH
Q 018892 28 PTKVAIADLGCSSGPNTLLVASEL--------------IKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQK 93 (349)
Q Consensus 28 ~~~~~iaD~Gcs~G~Ns~~~~~~i--------------i~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~ 93 (349)
+..-+|+|+||+.|.-++.+.+.. .+..++. -+++.-...++|+.-|+ +...
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~n-v~ln~l~~ri~v~~~Di-----~~~~-------- 108 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRN-VALNPLEERIQVIEADI-----KEFL-------- 108 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHH-HHhCcchhceeEehhhH-----HHhh--------
Confidence 347899999999999999887761 1111111 12222233466666651 1111
Q ss_pred HHHHhhCCCCCCCCceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHH
Q 018892 94 ILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQ 173 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~ 173 (349)
+-.+.+++|+++|+ |+--..++. ..+.+..+-.+.+..
T Consensus 109 ---------------------------~~~~~~~fD~Ii~N---------PPyf~~~~~------~~~~~~~~~Ar~e~~ 146 (248)
T COG4123 109 ---------------------------KALVFASFDLIICN---------PPYFKQGSR------LNENPLRAIARHEIT 146 (248)
T ss_pred ---------------------------hcccccccCEEEeC---------CCCCCCccc------cCcChhhhhhhhhhc
Confidence 11222378888874 766544322 123455666777788
Q ss_pred HHHHHHHHHhhHhhccCceEEEEe
Q 018892 174 RDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 174 ~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
-++..+++.=++=||+||++.++.
T Consensus 147 ~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 147 LDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCHHHHHHHHHHHccCCCEEEEEe
Confidence 899999999999999999998887
No 75
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.21 E-value=0.11 Score=47.57 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=16.1
Q ss_pred CceEEEeecCCCCcccHHHH
Q 018892 29 TKVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~ 48 (349)
..-+|.|+||++|..|..+.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred CcCEEEEECCcccHHHHHHH
Confidence 34689999999999886544
No 76
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.20 E-value=0.74 Score=42.35 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=105.9
Q ss_pred HHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhh
Q 018892 9 SIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSL 88 (349)
Q Consensus 9 ~~~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l 88 (349)
++-|.-|-+++++.+.+. .. +|.++||++|--+..+.+ .-|.++..=+|...+-+.++-.-+
T Consensus 8 eRNk~pIl~vL~~~l~~~--~~-~vLEiaSGtGqHa~~FA~---------------~lP~l~WqPSD~~~~~~~sI~a~~ 69 (204)
T PF06080_consen 8 ERNKDPILEVLKQYLPDS--GT-RVLEIASGTGQHAVYFAQ---------------ALPHLTWQPSDPDDNLRPSIRAWI 69 (204)
T ss_pred hhCHhHHHHHHHHHhCcc--Cc-eEEEEcCCccHHHHHHHH---------------HCCCCEEcCCCCChHHHhhHHHHH
Confidence 344555555666654321 12 799999999988665432 236788888999998887766544
Q ss_pred HhhHHHHHHhhCCCCCCCCceEEeecCCccccc----ccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHH
Q 018892 89 ASFQKILRKQLGSASGAAGQCFFTGVPGSFYGR----LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCV 164 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~r----lfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v 164 (349)
.... +.+ . ..++..= |...--.- -++..++|.++|.+.+|-++- ..+
T Consensus 70 ~~~~--~~N-----v--~~P~~lD-v~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~-------------------~~~ 120 (204)
T PF06080_consen 70 AEAG--LPN-----V--RPPLALD-VSAPPWPWELPAPLSPESFDAIFCINMLHISPW-------------------SAV 120 (204)
T ss_pred HhcC--Ccc-----c--CCCeEee-cCCCCCccccccccCCCCcceeeehhHHHhcCH-------------------HHH
Confidence 3311 111 0 0122211 11111100 126789999999999998663 112
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCccc
Q 018892 165 LTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYT 244 (349)
Q Consensus 165 ~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~ 244 (349)
+ .+++.=++-|++||.|++.-+=..++..++..+ ..+...|++. +.-|=.
T Consensus 121 -~-----------~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN----~~FD~sLr~r--------------dp~~Gi 170 (204)
T PF06080_consen 121 -E-----------GLFAGAARLLKPGGLLFLYGPFNRDGKFTSESN----AAFDASLRSR--------------DPEWGI 170 (204)
T ss_pred -H-----------HHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHH----HHHHHHHhcC--------------CCCcCc
Confidence 1 223344789999999988876555543333322 2244444333 333667
Q ss_pred CCHHHHHHHHhhCCceEEEE
Q 018892 245 PSPAEIKSEVIKEGSFTIDH 264 (349)
Q Consensus 245 ~s~~E~~~~ie~~GsF~i~~ 264 (349)
|..+++.++-++.| ++++.
T Consensus 171 RD~e~v~~lA~~~G-L~l~~ 189 (204)
T PF06080_consen 171 RDIEDVEALAAAHG-LELEE 189 (204)
T ss_pred cCHHHHHHHHHHCC-CccCc
Confidence 99999999999998 55443
No 77
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.08 E-value=0.22 Score=44.98 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=18.0
Q ss_pred HHHHHHHhhHhhccCceEEEEe
Q 018892 176 FSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 176 ~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
+..|++..++-|+|||++++..
T Consensus 124 ~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 124 LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEe
Confidence 3457777889999999999885
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.08 E-value=0.075 Score=53.45 Aligned_cols=112 Identities=17% Similarity=0.263 Sum_probs=65.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceE
Q 018892 31 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 110 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f 110 (349)
-.++|+||++|..++.+.. ..|+..++.-|.-..=-..+-+.+ .. .| . .++.
T Consensus 124 p~vLEIGcGsG~~ll~lA~---------------~~P~~~~iGIEI~~~~i~~a~~ka-------~~-~g--L---~NV~ 175 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAK---------------NNPNKLFIGIEIHTPSIEQVLKQI-------EL-LN--L---KNLL 175 (390)
T ss_pred CeEEEEcCcccHHHHHHHH---------------hCCCCCEEEEECCHHHHHHHHHHH-------HH-cC--C---CcEE
Confidence 4799999999988664432 125566666664322111111111 11 11 1 3544
Q ss_pred EeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 018892 111 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 190 (349)
Q Consensus 111 ~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G 190 (349)
+.-.-....-..+|++|+|.++.++...|..+ +. .++ -...||+.=++-|+||
T Consensus 176 ~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~Kk-rH------RRl--------------------v~~~fL~e~~RvLkpG 228 (390)
T PRK14121 176 IINYDARLLLELLPSNSVEKIFVHFPVPWDKK-PH------RRV--------------------ISEDFLNEALRVLKPG 228 (390)
T ss_pred EEECCHHHhhhhCCCCceeEEEEeCCCCcccc-ch------hhc--------------------cHHHHHHHHHHHcCCC
Confidence 43322222335689999999999888888332 10 001 1256777778999999
Q ss_pred ceEEEEe
Q 018892 191 GRMVLTF 197 (349)
Q Consensus 191 G~mvl~~ 197 (349)
|.+.+..
T Consensus 229 G~l~l~T 235 (390)
T PRK14121 229 GTLELRT 235 (390)
T ss_pred cEEEEEE
Confidence 9998876
No 79
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.90 E-value=0.33 Score=43.17 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.2
Q ss_pred CceEEEeecCCCCcccHHHH
Q 018892 29 TKVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~ 48 (349)
..-+|.|+||++|..++.+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la 50 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA 50 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH
Confidence 34689999999998887654
No 80
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.87 E-value=0.38 Score=43.63 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcccC--CCCceEEEeecCCCCcccHHHH
Q 018892 12 KPITEEAMTKLFCST--SPTKVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 12 ~~~l~~ai~~~~~~~--~~~~~~iaD~Gcs~G~Ns~~~~ 48 (349)
-|+..+.|+.+..+. ..+--++.|.||.+|.-|+..+
T Consensus 15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH
Confidence 345555666543321 2223499999999999988665
No 81
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.83 E-value=0.068 Score=48.66 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 018892 30 KVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
.-+|.|+||++|..|..+.+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~ 92 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAE 92 (205)
T ss_pred CCEEEEECcCccHHHHHHHH
Confidence 36899999999998865543
No 82
>PTZ00146 fibrillarin; Provisional
Probab=94.75 E-value=0.51 Score=45.81 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 018892 30 KVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
-.+|+|+||++|..|..+..
T Consensus 133 G~~VLDLGaG~G~~t~~lAd 152 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSD 152 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHH
Confidence 36899999999998765543
No 83
>PRK14967 putative methyltransferase; Provisional
Probab=94.62 E-value=0.37 Score=44.27 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=59.1
Q ss_pred cCCcccccccCCCceeEEEecccccccccCCCCcCC-CCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCce
Q 018892 114 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES-NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGR 192 (349)
Q Consensus 114 vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~-n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 192 (349)
+-+++.. .+|++++|+++++--.+..+.. ...+ +....|.... --..++..|++.=.+-|++||+
T Consensus 89 ~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 89 RRGDWAR-AVEFRPFDVVVSNPPYVPAPPD--APPSRGPARAWDAGP-----------DGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred EECchhh-hccCCCeeEEEECCCCCCCCcc--cccccChhHhhhCCC-----------cHHHHHHHHHHHHHHhcCCCcE
Confidence 3366665 4688899999997533322211 0000 0000110000 0123466777766788999999
Q ss_pred EEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCC
Q 018892 193 MVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEG 258 (349)
Q Consensus 193 mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~G 258 (349)
+++......+ +.+++..+...|+ .-+.+.+..+|+ .+..-.....+++.|
T Consensus 155 l~~~~~~~~~--------------~~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 155 LLLVQSELSG--------------VERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred EEEEEecccC--------------HHHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 9977644321 1233333333343 444455556663 333334446677787
No 84
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=94.60 E-value=0.44 Score=42.89 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=62.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCce
Q 018892 30 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 109 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~ 109 (349)
.-+|+|+||++|..++.+... .|+.+|+.-|.-. ..+ ......... .+ . .++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~---------------~p~~~v~gvD~~~---~~l----~~a~~~~~~-~~--l---~ni 68 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ---------------NPDKNFLGIEIHT---PIV----LAANNKANK-LG--L---KNL 68 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh---------------CCCCCEEEEEeeH---HHH----HHHHHHHHH-hC--C---CCE
Confidence 348999999999887654432 1345666666421 111 111111111 11 1 233
Q ss_pred EEeecCCccc---ccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHh
Q 018892 110 FFTGVPGSFY---GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 186 (349)
Q Consensus 110 f~~~vpgSFy---~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~E 186 (349)
-+ +-|+.. ..++|++++|.++.++..+|-.+ ... +..+. -..||+.=++-
T Consensus 69 ~~--i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h~----~~r~~--------------------~~~~l~~~~r~ 121 (194)
T TIGR00091 69 HV--LCGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RHN----KRRIT--------------------QPHFLKEYANV 121 (194)
T ss_pred EE--EccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Ccc----ccccC--------------------CHHHHHHHHHH
Confidence 22 333332 34578889999999999999543 110 00110 12355555778
Q ss_pred hccCceEEEEe
Q 018892 187 LVAEGRMVLTF 197 (349)
Q Consensus 187 L~~GG~mvl~~ 197 (349)
|+|||.+.+..
T Consensus 122 LkpgG~l~~~t 132 (194)
T TIGR00091 122 LKKGGVIHFKT 132 (194)
T ss_pred hCCCCEEEEEe
Confidence 99999998876
No 85
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=94.40 E-value=0.36 Score=44.00 Aligned_cols=96 Identities=19% Similarity=0.239 Sum_probs=66.0
Q ss_pred cCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCC
Q 018892 123 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS 202 (349)
Q Consensus 123 fP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~ 202 (349)
||++|+|.|+-|-+|+=+.+ |+.+. .+=|+.|.+.+++|+.-.
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~-P~~vL-----------------------------------~EmlRVgr~~IVsFPNFg- 113 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRR-PDEVL-----------------------------------EEMLRVGRRAIVSFPNFG- 113 (193)
T ss_pred CCCCCccEEehHhHHHhHhH-HHHHH-----------------------------------HHHHHhcCeEEEEecChH-
Confidence 89999999999999988764 65432 233778999999994322
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcc------cCCHHHHHHHHhhCCceEEEEEEEEeecc
Q 018892 203 QDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQY------TPSPAEIKSEVIKEGSFTIDHLEVSEVNW 272 (349)
Q Consensus 203 ~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y------~~s~~E~~~~ie~~GsF~i~~~e~~~~~w 272 (349)
.|. .-..+.-.|..+..+ .+..+|| +-|..++++..++.| ++|++-..+...|
T Consensus 114 ----------~W~----~R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 114 ----------HWR----NRLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLDGGR 172 (193)
T ss_pred ----------HHH----HHHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEcCCC
Confidence 233 223344457766653 3344444 569999999999998 8888777665433
No 86
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.27 E-value=0.37 Score=46.89 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=17.4
Q ss_pred HHHHHHHhhHhhccCceEEEEec
Q 018892 176 FSLFLKCRSEELVAEGRMVLTFL 198 (349)
Q Consensus 176 ~~~FL~~Ra~EL~~GG~mvl~~~ 198 (349)
...|++.=.+-|+|||++++.+.
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 34566666777999999998863
No 87
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.24 E-value=0.29 Score=44.74 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.2
Q ss_pred CceEEEeecCCCCcccHHHH
Q 018892 29 TKVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~ 48 (349)
..-+|.|+||++|..|..+.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la 96 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA 96 (215)
T ss_pred CcCEEEEECCCccHHHHHHH
Confidence 34699999999999987543
No 88
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=94.23 E-value=0.39 Score=44.28 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=39.9
Q ss_pred HHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhh
Q 018892 177 SLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIK 256 (349)
Q Consensus 177 ~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~ 256 (349)
..+++.=.+-|+|||++++.....+... . .| |-|.-+.+|+++.+..
T Consensus 132 ~~~~~~l~~lLkpgG~~ll~~~~~~~~~-~--------------------~g------------pp~~~~~~eL~~~f~~ 178 (213)
T TIGR03840 132 QRYAAHLLALLPPGARQLLITLDYDQSE-M--------------------AG------------PPFSVSPAEVEALYGG 178 (213)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEEcCCCC-C--------------------CC------------cCCCCCHHHHHHHhcC
Confidence 3445566788999998776665443210 0 02 5578999999998863
Q ss_pred CCceEEEEEEEEeec
Q 018892 257 EGSFTIDHLEVSEVN 271 (349)
Q Consensus 257 ~GsF~i~~~e~~~~~ 271 (349)
.|+|+.++..+.+
T Consensus 179 --~~~i~~~~~~~~~ 191 (213)
T TIGR03840 179 --HYEIELLESRDVL 191 (213)
T ss_pred --CceEEEEeecccc
Confidence 3888888766543
No 89
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.09 E-value=0.24 Score=46.46 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhHhhccCceEEEEe
Q 018892 174 RDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 174 ~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
.++..|++.=.+=|+|||.+++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 456677777778899999999865
No 90
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=93.84 E-value=0.2 Score=45.77 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.4
Q ss_pred CcccccccCCCceeEEEecccccccc
Q 018892 116 GSFYGRLFPRNSVHLFHSSYSLQWLS 141 (349)
Q Consensus 116 gSFy~rlfP~~Svh~~~Ss~alHWLS 141 (349)
++... -+|++++|+++++.+||+++
T Consensus 95 ~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 95 GSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred eeccC-CCCCCCEEEEEECChhhhCC
Confidence 45555 67899999999999998764
No 91
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=93.83 E-value=0.058 Score=49.82 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=27.2
Q ss_pred cCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEe
Q 018892 123 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 123 fP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
++++|+|++...-||+= .||..||..=.+-|||||.|.+.=
T Consensus 118 L~~~svDv~VfcLSLMG----------------------------------Tn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 118 LEDESVDVAVFCLSLMG----------------------------------TNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp --TT-EEEEEEES---S----------------------------------S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceeEEEEEhhhhC----------------------------------CCcHHHHHHHHheeccCcEEEEEE
Confidence 48999999887766541 267778877788999999997753
No 92
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=93.56 E-value=0.61 Score=43.15 Aligned_cols=103 Identities=19% Similarity=0.312 Sum_probs=67.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
+.-+|+|+|+++|..++.+ .+. -|.+++..=|||.. ++.... . .+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l--------~~~-------~P~l~~~v~Dlp~v--------~~~~~~------~------~r 144 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIAL--------ARA-------YPNLRATVFDLPEV--------IEQAKE------A------DR 144 (241)
T ss_dssp TSSEEEEET-TTSHHHHHH--------HHH-------STTSEEEEEE-HHH--------HCCHHH------T------TT
T ss_pred CccEEEeccCcchHHHHHH--------HHH-------CCCCcceeeccHhh--------hhcccc------c------cc
Confidence 4458999999999876543 222 36789999998853 211111 1 23
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
|- -+||.|+ .=+|. .|+++-+..||=.+ .+|-..+|+.=++-|+
T Consensus 145 v~--~~~gd~f-~~~P~--~D~~~l~~vLh~~~-------------------------------d~~~~~iL~~~~~al~ 188 (241)
T PF00891_consen 145 VE--FVPGDFF-DPLPV--ADVYLLRHVLHDWS-------------------------------DEDCVKILRNAAAALK 188 (241)
T ss_dssp EE--EEES-TT-TCCSS--ESEEEEESSGGGS--------------------------------HHHHHHHHHHHHHHSE
T ss_pred cc--cccccHH-hhhcc--ccceeeehhhhhcc-------------------------------hHHHHHHHHHHHHHhC
Confidence 33 3899999 77888 99999999998333 1234566777788899
Q ss_pred cC--ceEEEEecccCC
Q 018892 189 AE--GRMVLTFLGRKS 202 (349)
Q Consensus 189 ~G--G~mvl~~~g~~~ 202 (349)
|| |++++.=.-.++
T Consensus 189 pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 189 PGKDGRLLIIEMVLPD 204 (241)
T ss_dssp ECTTEEEEEEEEEECS
T ss_pred CCCCCeEEEEeeccCC
Confidence 99 999887555444
No 93
>PRK04266 fibrillarin; Provisional
Probab=93.50 E-value=0.96 Score=42.10 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.7
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018892 30 KVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~ 48 (349)
.-+|+|+||++|..|+.+.
T Consensus 73 g~~VlD~G~G~G~~~~~la 91 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVS 91 (226)
T ss_pred CCEEEEEccCCCHHHHHHH
Confidence 3699999999999877653
No 94
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=93.44 E-value=0.23 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhHhhccCceEEEEe
Q 018892 174 RDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 174 ~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
.+...+|+.=.+-|+|||++++..
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEE
Confidence 356677777788999999999975
No 95
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=93.43 E-value=0.44 Score=46.96 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=34.2
Q ss_pred CceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecc
Q 018892 126 NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG 199 (349)
Q Consensus 126 ~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 199 (349)
..+|+|-+-.|||..=. + ++-..+||+.=++-|+|||.|+.+++-
T Consensus 144 ~~FDvVScQFalHY~Fe-----------------s------------e~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFE-----------------S------------EEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp S-EEEEEEES-GGGGGS-----------------S------------HHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCcceeehHHHHHHhcC-----------------C------------HHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 48999999999998543 0 123467899999999999999999853
No 96
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.26 E-value=0.53 Score=49.04 Aligned_cols=130 Identities=15% Similarity=0.208 Sum_probs=64.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCce
Q 018892 30 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 109 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~ 109 (349)
..+|.|+||++|..++.+... .|..+|+.-|.-. +.-.+.+ .+ ... .+- ..++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~---------------~p~~~v~avDis~-~al~~A~---~N---~~~-~~l----~~~v 191 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCE---------------LPNANVIATDISL-DAIEVAK---SN---AIK-YEV----TDRI 191 (506)
T ss_pred CCEEEEccCchhHHHHHHHHH---------------CCCCeEEEEECCH-HHHHHHH---HH---HHH-cCC----ccce
Confidence 468999999999888755431 1346788888621 1111111 11 111 110 0122
Q ss_pred EEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHH-HHHHHHHHHHHHhhHhhc
Q 018892 110 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYE-QFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 110 f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~-Q~~~D~~~FL~~Ra~EL~ 188 (349)
..+-++++.. +|.+++|+++|+--....+..+....+ + ..-.|. .+-+.. .--..+..+++.=.+-|+
T Consensus 192 --~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~----v--~~~EP~--~AL~gg~dGl~~~~~il~~a~~~L~ 260 (506)
T PRK01544 192 --QIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIE----T--INYEPS--IALFAEEDGLQAYFIIAENAKQFLK 260 (506)
T ss_pred --eeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCch----h--hccCcH--HHhcCCccHHHHHHHHHHHHHHhcc
Confidence 2244666553 366789999997433322221111000 0 000000 001100 012335667777678899
Q ss_pred cCceEEEEe
Q 018892 189 AEGRMVLTF 197 (349)
Q Consensus 189 ~GG~mvl~~ 197 (349)
|||.+++.+
T Consensus 261 ~gG~l~lEi 269 (506)
T PRK01544 261 PNGKIILEI 269 (506)
T ss_pred CCCEEEEEE
Confidence 999999875
No 97
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.25 E-value=0.55 Score=47.78 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=17.2
Q ss_pred HHHHHHHhhHhhccCceEEEEe
Q 018892 176 FSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 176 ~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
+.++++.=.+-|+|||.+++..
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEE
Confidence 5567776677899999988766
No 98
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=92.90 E-value=0.47 Score=38.22 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHHhhHhhccCceEEEEec
Q 018892 175 DFSLFLKCRSEELVAEGRMVLTFL 198 (349)
Q Consensus 175 D~~~FL~~Ra~EL~~GG~mvl~~~ 198 (349)
+...|++.=.+=|+|||.+++.++
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 566788888999999999999874
No 99
>PRK14968 putative methyltransferase; Provisional
Probab=92.86 E-value=2.3 Score=37.10 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHHHHHHHhhHhhccCceEEEEe
Q 018892 175 DFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 175 D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
.+..|++.-.+-|+|||.+++..
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEE
Confidence 35678888889999999998876
No 100
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=92.63 E-value=1 Score=45.88 Aligned_cols=124 Identities=16% Similarity=0.111 Sum_probs=62.2
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceE
Q 018892 31 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 110 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f 110 (349)
-+|.|+||++|.-|+.+.+.. + +.-+|+-.|+-.+=-..+ .+.... .|- .++
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~-----------~---~~~~v~avDi~~~~l~~~-------~~n~~~-~g~-----~~v- 303 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELL-----------K---NTGKVVALDIHEHKLKLI-------EENAKR-LGL-----TNI- 303 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHh-----------C---CCCEEEEEeCCHHHHHHH-------HHHHHH-cCC-----CeE-
Confidence 589999999999998655431 1 124666666533211111 111111 121 122
Q ss_pred EeecCCcccc--cccCCCceeEEEec---ccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 018892 111 FTGVPGSFYG--RLFPRNSVHLFHSS---YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 185 (349)
Q Consensus 111 ~~~vpgSFy~--rlfP~~Svh~~~Ss---~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~ 185 (349)
..+-+.+.. .-+| +++|.+++. +.+..+++.|+... .. ++..+ ....+--..+|+.=.+
T Consensus 304 -~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~--------~~-~~~~~-----~~l~~~q~~iL~~a~~ 367 (444)
T PRK14902 304 -ETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKY--------NK-TKEDI-----ESLQEIQLEILESVAQ 367 (444)
T ss_pred -EEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhh--------cC-CHHHH-----HHHHHHHHHHHHHHHH
Confidence 222233321 1234 678999864 23444455454221 01 11111 1222333456777778
Q ss_pred hhccCceEEEEec
Q 018892 186 ELVAEGRMVLTFL 198 (349)
Q Consensus 186 EL~~GG~mvl~~~ 198 (349)
-|+|||+||...+
T Consensus 368 ~LkpGG~lvystc 380 (444)
T PRK14902 368 YLKKGGILVYSTC 380 (444)
T ss_pred HcCCCCEEEEEcC
Confidence 8999999996553
No 101
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=92.20 E-value=1 Score=45.74 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhHhhccCceEEEEecc
Q 018892 172 FQRDFSLFLKCRSEELVAEGRMVLTFLG 199 (349)
Q Consensus 172 ~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 199 (349)
+......+|..=.+-|+|||+||...+.
T Consensus 347 l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 347 LAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3455567787778899999999987753
No 102
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=92.06 E-value=0.78 Score=46.79 Aligned_cols=129 Identities=11% Similarity=0.065 Sum_probs=68.9
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceE
Q 018892 31 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 110 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f 110 (349)
-+|.|+||++|.-|+.+.... + +.-+|+-.|+-.+ -|-. ..+.+.. .|- .++-
T Consensus 239 ~~VLD~cagpGgkt~~la~~~-----------~---~~g~V~a~Dis~~---rl~~----~~~n~~r-~g~-----~~v~ 291 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELM-----------K---DQGKILAVDISRE---KIQL----VEKHAKR-LKL-----SSIE 291 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHc-----------C---CCCEEEEEECCHH---HHHH----HHHHHHH-cCC-----CeEE
Confidence 489999999999988654321 1 2357777776322 2211 1111111 121 2221
Q ss_pred EeecCCcccccccCCCceeEEEe---cccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 018892 111 FTGVPGSFYGRLFPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 187 (349)
Q Consensus 111 ~~~vpgSFy~rlfP~~Svh~~~S---s~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 187 (349)
+......-+.+ +.++++|.|+. .+.+..+.+.|+.... . +++ -..+..+.-...|..=++-|
T Consensus 292 ~~~~Da~~l~~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------~-~~~----~~~~l~~~Q~~iL~~a~~~L 356 (431)
T PRK14903 292 IKIADAERLTE-YVQDTFDRILVDAPCTSLGTARNHPEVLRR---------V-NKE----DFKKLSEIQLRIVSQAWKLL 356 (431)
T ss_pred EEECchhhhhh-hhhccCCEEEECCCCCCCccccCChHHHHh---------C-CHH----HHHHHHHHHHHHHHHHHHhc
Confidence 11111111111 23567888885 3455666666643211 1 111 12344555677787778999
Q ss_pred ccCceEEEEecccC
Q 018892 188 VAEGRMVLTFLGRK 201 (349)
Q Consensus 188 ~~GG~mvl~~~g~~ 201 (349)
+|||+||...+...
T Consensus 357 kpGG~LvYsTCs~~ 370 (431)
T PRK14903 357 EKGGILLYSTCTVT 370 (431)
T ss_pred CCCCEEEEEECCCC
Confidence 99999999886654
No 103
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=91.77 E-value=1.4 Score=42.16 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhHhhccCceEEEEec
Q 018892 174 RDFSLFLKCRSEELVAEGRMVLTFL 198 (349)
Q Consensus 174 ~D~~~FL~~Ra~EL~~GG~mvl~~~ 198 (349)
.+...|++.=.+-|+|||.+++.++
T Consensus 221 ~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEC
Confidence 3566777777788999999998884
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=90.74 E-value=1.8 Score=43.98 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=68.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCce
Q 018892 30 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 109 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~ 109 (349)
.-+|.|+||+.|.-|+.+...+ + .-+|+-.|.-.+=-..+-++ ++. .| . ++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~-----------~----~~~v~a~D~~~~~l~~~~~n-------~~r-~g--~----~~ 289 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA-----------P----QAQVVALDIHEHRLKRVYEN-------LKR-LG--L----TI 289 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc-----------C----CCeEEEEeCCHHHHHHHHHH-------HHH-cC--C----Ce
Confidence 3689999999999998655321 1 24567777522222222111 111 12 1 12
Q ss_pred EEeecCCccccc--ccCCCceeEEEe---cccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 018892 110 FFTGVPGSFYGR--LFPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 184 (349)
Q Consensus 110 f~~~vpgSFy~r--lfP~~Svh~~~S---s~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra 184 (349)
-+..+.+.-.+- ..+.+++|.++. .+++.-+.+.|+..- .. ++..+ .+..+.-..+|..=+
T Consensus 290 ~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~--------~~-~~~~~-----~~l~~lQ~~lL~~a~ 355 (426)
T TIGR00563 290 KAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKW--------LR-KPRDI-----AELAELQSEILDAIW 355 (426)
T ss_pred EEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhh--------cC-CHHHH-----HHHHHHHHHHHHHHH
Confidence 222233332221 236778999985 244444555664321 01 12222 233344456777767
Q ss_pred HhhccCceEEEEecccC
Q 018892 185 EELVAEGRMVLTFLGRK 201 (349)
Q Consensus 185 ~EL~~GG~mvl~~~g~~ 201 (349)
+-|+|||+||...+.-.
T Consensus 356 ~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 356 PLLKTGGTLVYATCSVL 372 (426)
T ss_pred HhcCCCcEEEEEeCCCC
Confidence 78999999998876553
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=89.49 E-value=2 Score=41.42 Aligned_cols=115 Identities=10% Similarity=0.104 Sum_probs=64.1
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceE
Q 018892 31 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 110 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f 110 (349)
-+|+|+||++|..++.+... .+..+|+..|+-. ++-.+.+. ... +--+
T Consensus 66 grVLDLGcGsGilsl~la~r---------------~~~~~V~gVDisp-~al~~Ar~----------n~~------~v~~ 113 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHR---------------CKPEKIVCVELNP-EFARIGKR----------LLP------EAEW 113 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHHH----------hCc------CCEE
Confidence 58999999999765543221 1125677777533 11111111 000 1112
Q ss_pred EeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHH----HHH--HHHHHHHHhh
Q 018892 111 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQ----FQR--DFSLFLKCRS 184 (349)
Q Consensus 111 ~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q----~~~--D~~~FL~~Ra 184 (349)
+-+.+.. +.+..++|+++|+-.++++.. . .. .+.|+-+ -.+ .+..||+..+
T Consensus 114 ---v~~D~~e-~~~~~kFDlIIsNPPF~~l~~-~-d~-----------------~~~~~~~GG~~g~~~l~~~~~l~~v~ 170 (279)
T PHA03411 114 ---ITSDVFE-FESNEKFDVVISNPPFGKINT-T-DT-----------------KDVFEYTGGEFEFKVMTLGQKFADVG 170 (279)
T ss_pred ---EECchhh-hcccCCCcEEEEcCCccccCc-h-hh-----------------hhhhhhccCccccccccHHHHHhhhH
Confidence 3344443 234578999999999998652 1 11 0111110 011 2578999999
Q ss_pred HhhccCceEEEEeccc
Q 018892 185 EELVAEGRMVLTFLGR 200 (349)
Q Consensus 185 ~EL~~GG~mvl~~~g~ 200 (349)
.=|+|+|...+.+.|+
T Consensus 171 ~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 171 YFIVPTGSAGFAYSGR 186 (279)
T ss_pred heecCCceEEEEEecc
Confidence 9999999877775443
No 106
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=89.03 E-value=1.4 Score=42.16 Aligned_cols=24 Identities=17% Similarity=0.258 Sum_probs=20.4
Q ss_pred HHHHHHHHhhHhhccCceEEEEec
Q 018892 175 DFSLFLKCRSEELVAEGRMVLTFL 198 (349)
Q Consensus 175 D~~~FL~~Ra~EL~~GG~mvl~~~ 198 (349)
||..|++-=.+-|++||.+.+.=.
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEeh
Confidence 677888888999999999988653
No 107
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=88.60 E-value=0.47 Score=45.54 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=13.8
Q ss_pred ceEEEeecCCCCcccHH
Q 018892 30 KVAIADLGCSSGPNTLL 46 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~ 46 (349)
.-+|.|+||++|..++.
T Consensus 160 g~~VLDvGcGsG~lai~ 176 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIA 176 (288)
T ss_pred CCEEEEeCCChhHHHHH
Confidence 36899999999976653
No 108
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=88.54 E-value=3.5 Score=42.10 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=66.4
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc-e
Q 018892 31 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ-C 109 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~-~ 109 (349)
-+|.|+||++|..|+.+... +. +.-+|+-.|.-..=...+=+.+. . .|- .+ .
T Consensus 252 ~~VLDlgaG~G~kt~~la~~----~~----------~~~~V~avD~s~~~l~~~~~~~~-------~-~g~-----~~v~ 304 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAEL----MQ----------NRGQITAVDRYPQKLEKIRSHAS-------A-LGI-----TIIE 304 (445)
T ss_pred CEEEEECCCCCHHHHHHHHH----hC----------CCcEEEEEECCHHHHHHHHHHHH-------H-hCC-----CeEE
Confidence 57999999999998855432 11 12366666654332222222111 1 121 22 2
Q ss_pred EEeecCCcccccccCCCceeEEEe----cccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 018892 110 FFTGVPGSFYGRLFPRNSVHLFHS----SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 185 (349)
Q Consensus 110 f~~~vpgSFy~rlfP~~Svh~~~S----s~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~ 185 (349)
++.+=.. .+.|++++|.++. +.+-+|-. .|+... ..++ +.. .+..+.-..+|..=++
T Consensus 305 ~~~~Da~----~~~~~~~fD~Vl~D~Pcsg~g~~~r-~p~~~~---------~~~~-~~~----~~l~~~q~~iL~~a~~ 365 (445)
T PRK14904 305 TIEGDAR----SFSPEEQPDAILLDAPCTGTGVLGR-RAELRW---------KLTP-EKL----AELVGLQAELLDHAAS 365 (445)
T ss_pred EEeCccc----ccccCCCCCEEEEcCCCCCcchhhc-Ccchhh---------cCCH-HHH----HHHHHHHHHHHHHHHH
Confidence 2222222 2336778999883 33334432 343211 0111 221 2334456678888888
Q ss_pred hhccCceEEEEecccC
Q 018892 186 ELVAEGRMVLTFLGRK 201 (349)
Q Consensus 186 EL~~GG~mvl~~~g~~ 201 (349)
-|+|||+||...+...
T Consensus 366 ~lkpgG~lvystcs~~ 381 (445)
T PRK14904 366 LLKPGGVLVYATCSIE 381 (445)
T ss_pred hcCCCcEEEEEeCCCC
Confidence 9999999999875543
No 109
>PRK00811 spermidine synthase; Provisional
Probab=88.18 E-value=1.9 Score=41.33 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=16.4
Q ss_pred CCCceEEEeecCCCCcccHHH
Q 018892 27 SPTKVAIADLGCSSGPNTLLV 47 (349)
Q Consensus 27 ~~~~~~iaD~Gcs~G~Ns~~~ 47 (349)
.+++-+|.|+||++|..+..+
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~ 94 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREV 94 (283)
T ss_pred CCCCCEEEEEecCchHHHHHH
Confidence 345679999999999886544
No 110
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=87.71 E-value=5.2 Score=37.25 Aligned_cols=109 Identities=16% Similarity=0.098 Sum_probs=62.7
Q ss_pred ceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 018892 108 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 187 (349)
Q Consensus 108 ~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL 187 (349)
..|+.|-+.+--+ +|+.|+|.+.+..+|. |. .++ ..-|+.=.+-|
T Consensus 128 ~~fvva~ge~l~~--l~d~s~DtVV~TlvLC--Sv----------------e~~---------------~k~L~e~~rlL 172 (252)
T KOG4300|consen 128 ERFVVADGENLPQ--LADGSYDTVVCTLVLC--SV----------------EDP---------------VKQLNEVRRLL 172 (252)
T ss_pred EEEEeechhcCcc--cccCCeeeEEEEEEEe--cc----------------CCH---------------HHHHHHHHHhc
Confidence 3688887765432 2899999998877663 21 111 12244446789
Q ss_pred ccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEE
Q 018892 188 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEV 267 (349)
Q Consensus 188 ~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~ 267 (349)
+|||++++.=-|+..-+ --..+|+...+-+-.+...| +.=-.|.-+.++++ .|++.+.+.
T Consensus 173 RpgG~iifiEHva~~y~----~~n~i~q~v~ep~~~~~~dG---------------C~ltrd~~e~Leda-~f~~~~~kr 232 (252)
T KOG4300|consen 173 RPGGRIIFIEHVAGEYG----FWNRILQQVAEPLWHLESDG---------------CVLTRDTGELLEDA-EFSIDSCKR 232 (252)
T ss_pred CCCcEEEEEecccccch----HHHHHHHHHhchhhheeccc---------------eEEehhHHHHhhhc-ccccchhhc
Confidence 99999998876665421 11123333333333333333 22234555667766 488888877
Q ss_pred Eeec
Q 018892 268 SEVN 271 (349)
Q Consensus 268 ~~~~ 271 (349)
+..+
T Consensus 233 ~~~~ 236 (252)
T KOG4300|consen 233 FNFG 236 (252)
T ss_pred ccCC
Confidence 6544
No 111
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.62 E-value=0.96 Score=46.80 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=33.4
Q ss_pred ccCCCceeEEEeccccc-ccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEeccc
Q 018892 122 LFPRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR 200 (349)
Q Consensus 122 lfP~~Svh~~~Ss~alH-WLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~ 200 (349)
-||++++|++||+-|+. |.+.. | ++.- ++ -+-|+|||.+|+.-.-.
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~--------g-~~l~-----ev-------------------dRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND--------G-FLLF-----EV-------------------DRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cCCccchhhhhcccccccchhcc--------c-ceee-----hh-------------------hhhhccCceEEecCCcc
Confidence 38999999999999986 76542 2 2221 22 56799999999987543
No 112
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=84.41 E-value=2.6 Score=40.76 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.7
Q ss_pred HHHHHHHhhHhhccCceEEEEecccCC
Q 018892 176 FSLFLKCRSEELVAEGRMVLTFLGRKS 202 (349)
Q Consensus 176 ~~~FL~~Ra~EL~~GG~mvl~~~g~~~ 202 (349)
+..|+..-.+-|+|||.+++...++..
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEeccccc
Confidence 556777778899999999999998865
No 113
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=83.68 E-value=12 Score=38.13 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhHhhccCceEEEEecc
Q 018892 172 FQRDFSLFLKCRSEELVAEGRMVLTFLG 199 (349)
Q Consensus 172 ~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 199 (349)
+.+.-..+|..=++-|+|||+||...+.
T Consensus 359 l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 359 LAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3445567788878889999999876543
No 114
>PLN03075 nicotianamine synthase; Provisional
Probab=83.61 E-value=7.4 Score=37.88 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=15.8
Q ss_pred CceEEEeecCCCCcccHHHH
Q 018892 29 TKVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~ 48 (349)
.+=+|+|+||+.||-|-+++
T Consensus 123 ~p~~VldIGcGpgpltaiil 142 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVL 142 (296)
T ss_pred CCCEEEEECCCCcHHHHHHH
Confidence 56789999999998766443
No 115
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=83.19 E-value=2.3 Score=39.56 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=59.9
Q ss_pred CceEEeecCCcccccccCC-CceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 018892 107 GQCFFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 185 (349)
Q Consensus 107 ~~~f~~~vpgSFy~rlfP~-~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~ 185 (349)
.++|..|.- ..-|. +..|++|.-||+..|+ ..|+..||+.=.+
T Consensus 106 ~~~~~~gLQ-----~f~P~~~~YDlIW~QW~lghLT-------------------------------D~dlv~fL~RCk~ 149 (218)
T PF05891_consen 106 GEFYCVGLQ-----DFTPEEGKYDLIWIQWCLGHLT-------------------------------DEDLVAFLKRCKQ 149 (218)
T ss_dssp EEEEES-GG-----G----TT-EEEEEEES-GGGS--------------------------------HHHHHHHHHHHHH
T ss_pred ceEEecCHh-----hccCCCCcEeEEEehHhhccCC-------------------------------HHHHHHHHHHHHH
Confidence 467777653 33465 7899999999988877 3699999999899
Q ss_pred hhccCceEEEEe-cccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEE
Q 018892 186 ELVAEGRMVLTF-LGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDH 264 (349)
Q Consensus 186 EL~~GG~mvl~~-~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~ 264 (349)
-|+|||.+|+== ...... -.++++ | -...||.+.++.+++++| ++|.+
T Consensus 150 ~L~~~G~IvvKEN~~~~~~------------------------~~~D~~--D----sSvTRs~~~~~~lF~~AG-l~~v~ 198 (218)
T PF05891_consen 150 ALKPNGVIVVKENVSSSGF------------------------DEFDEE--D----SSVTRSDEHFRELFKQAG-LRLVK 198 (218)
T ss_dssp HEEEEEEEEEEEEEESSSE------------------------EEEETT--T----TEEEEEHHHHHHHHHHCT--EEEE
T ss_pred hCcCCcEEEEEecCCCCCC------------------------cccCCc--c----CeeecCHHHHHHHHHHcC-CEEEE
Confidence 999999887631 111100 011221 2 346789999999999999 77766
Q ss_pred EEE
Q 018892 265 LEV 267 (349)
Q Consensus 265 ~e~ 267 (349)
-+.
T Consensus 199 ~~~ 201 (218)
T PF05891_consen 199 EEK 201 (218)
T ss_dssp EEE
T ss_pred ecc
Confidence 553
No 116
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=82.93 E-value=10 Score=37.04 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=19.7
Q ss_pred HHHHHHHhhHhhccCceEEEEecccC
Q 018892 176 FSLFLKCRSEELVAEGRMVLTFLGRK 201 (349)
Q Consensus 176 ~~~FL~~Ra~EL~~GG~mvl~~~g~~ 201 (349)
...+|+.=++-|+|||++++.++...
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 34566666788999999999986543
No 117
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=81.31 E-value=12 Score=35.49 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhHhhccCceEEEEeccc
Q 018892 172 FQRDFSLFLKCRSEELVAEGRMVLTFLGR 200 (349)
Q Consensus 172 ~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~ 200 (349)
..+.-..+|+.=++-|+|||+||......
T Consensus 174 l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 174 ISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34455668888788899999998776443
No 118
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=81.26 E-value=3.8 Score=39.02 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=53.3
Q ss_pred ceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCC
Q 018892 127 SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPS 206 (349)
Q Consensus 127 Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~ 206 (349)
..|.+.|++||.=.++.+ +.|. +=|+.=+.=|||||.|++...-..+.
T Consensus 158 ~~D~v~s~fcLE~a~~d~---------------------~~y~--------~al~ni~~lLkpGG~Lil~~~l~~t~--- 205 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDL---------------------DEYR--------RALRNISSLLKPGGHLILAGVLGSTY--- 205 (256)
T ss_dssp SEEEEEEESSHHHH-SSH---------------------HHHH--------HHHHHHHTTEEEEEEEEEEEESS-SE---
T ss_pred chhhhhhhHHHHHHcCCH---------------------HHHH--------HHHHHHHHHcCCCcEEEEEEEcCcee---
Confidence 599999999998877522 1222 22334467799999999987643321
Q ss_pred ChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEE
Q 018892 207 SKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 266 (349)
Q Consensus 207 ~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e 266 (349)
+ |+ | .-.+|.+.-+.+.+++.|+++| |.|...+
T Consensus 206 -----Y-----------~v--G--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 206 -----Y-----------MV--G--------GHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp -----E-----------EE--T--------TEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred -----E-----------EE--C--------CEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 1 11 2 1237888899999999999999 9999888
No 119
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=80.36 E-value=8.2 Score=36.58 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=14.6
Q ss_pred HHHHHhhHhhccCceEEEE
Q 018892 178 LFLKCRSEELVAEGRMVLT 196 (349)
Q Consensus 178 ~FL~~Ra~EL~~GG~mvl~ 196 (349)
.|++.=++-|+|||.+++.
T Consensus 167 ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 4445556789999999987
No 120
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=80.27 E-value=41 Score=33.97 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhHhhccCceEEEEe
Q 018892 172 FQRDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 172 ~~~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
..+++..++..=.+=|+|||.+++..
T Consensus 314 ~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 314 ACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 45567777766677889999998654
No 121
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=79.86 E-value=3.5 Score=38.68 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=44.4
Q ss_pred ccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecc
Q 018892 122 LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG 199 (349)
Q Consensus 122 lfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g 199 (349)
=|+++++|-++|-.|++||=..-+... .| ++-+.+|...=..-|++|++-|+.|-=
T Consensus 107 pfrpGtFDg~ISISAvQWLcnA~~s~~------------~P----------~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCNADKSLH------------VP----------KKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CCCCCccceEEEeeeeeeecccCcccc------------Ch----------HHHHHHHhhhhhhhhccCceeEEEecc
Confidence 489999999999999999875433321 11 466888888889999999999999943
No 122
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=79.12 E-value=6.7 Score=36.10 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHH
Q 018892 12 KPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 12 ~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~ 48 (349)
.|.+...+.+.+. .. .-.+|.|+||++|.+|-.+.
T Consensus 57 ~P~~~a~~l~~L~-l~-pg~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 57 APSMVARMLEALD-LK-PGDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp -HHHHHHHHHHTT-C--TT-EEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHHHHHh-cC-CCCEEEEecCCCcHHHHHHH
Confidence 3444444444432 22 34799999999999986543
No 123
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.01 E-value=9.5 Score=35.29 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=30.4
Q ss_pred eeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEec
Q 018892 128 VHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL 198 (349)
Q Consensus 128 vh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 198 (349)
|++.+---+..|=...|= |.|+++.+- +++-+++. +-|++||+||+-..
T Consensus 122 V~v~~gDG~~G~~~~aPy------D~I~Vtaaa-~~vP~~Ll---------------~QL~~gGrlv~PvG 170 (209)
T COG2518 122 VTVRHGDGSKGWPEEAPY------DRIIVTAAA-PEVPEALL---------------DQLKPGGRLVIPVG 170 (209)
T ss_pred eEEEECCcccCCCCCCCc------CEEEEeecc-CCCCHHHH---------------HhcccCCEEEEEEc
Confidence 555666666677555552 356666542 22334444 45899999999887
No 124
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=75.00 E-value=11 Score=34.16 Aligned_cols=113 Identities=20% Similarity=0.341 Sum_probs=62.9
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCceEE
Q 018892 32 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF 111 (349)
Q Consensus 32 ~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~f~ 111 (349)
.+.|+||+.|...+.... ..|+..++--|.-.+=....-+.+. . .+ . .|+.+
T Consensus 20 l~lEIG~G~G~~l~~~A~---------------~~Pd~n~iGiE~~~~~v~~a~~~~~-------~-~~--l---~Nv~~ 71 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK---------------RNPDINFIGIEIRKKRVAKALRKAE-------K-RG--L---KNVRF 71 (195)
T ss_dssp EEEEET-TTSHHHHHHHH---------------HSTTSEEEEEES-HHHHHHHHHHHH-------H-HT--T---SSEEE
T ss_pred eEEEecCCCCHHHHHHHH---------------HCCCCCEEEEecchHHHHHHHHHHH-------h-hc--c---cceEE
Confidence 899999999987553221 1356777777764433322222221 1 12 2 45544
Q ss_pred e-ecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 018892 112 T-GVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 190 (349)
Q Consensus 112 ~-~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G 190 (349)
. +=...+...++|++||+-++=.+-==|-.+-- .|.++. . ..||+.=++-|+||
T Consensus 72 ~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH-----~krRl~-----~---------------~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 72 LRGDARELLRRLFPPGSVDRIYINFPDPWPKKRH-----HKRRLV-----N---------------PEFLELLARVLKPG 126 (195)
T ss_dssp EES-CTTHHHHHSTTTSEEEEEEES-----SGGG-----GGGSTT-----S---------------HHHHHHHHHHEEEE
T ss_pred EEccHHHHHhhcccCCchheEEEeCCCCCcccch-----hhhhcC-----C---------------chHHHHHHHHcCCC
Confidence 4 44566788999999999888776555522100 112221 1 13566668899999
Q ss_pred ceEEEEe
Q 018892 191 GRMVLTF 197 (349)
Q Consensus 191 G~mvl~~ 197 (349)
|.+.+..
T Consensus 127 G~l~~~T 133 (195)
T PF02390_consen 127 GELYFAT 133 (195)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9887665
No 125
>PRK04457 spermidine synthase; Provisional
Probab=74.32 E-value=11 Score=35.67 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.3
Q ss_pred HHHHHhhHhhccCceEEEEecccC
Q 018892 178 LFLKCRSEELVAEGRMVLTFLGRK 201 (349)
Q Consensus 178 ~FL~~Ra~EL~~GG~mvl~~~g~~ 201 (349)
.|++.=.+-|+|||++++++.+++
T Consensus 158 efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 158 PFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHHhcCCCcEEEEEcCCCc
Confidence 344444566999999999876553
No 126
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=74.17 E-value=14 Score=38.58 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=78.6
Q ss_pred HHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHH
Q 018892 4 QEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNT 83 (349)
Q Consensus 4 Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~ 83 (349)
|++.++...|.+.=.-..+. ..+.-.+.|+||+.|...+.... ..|+..++--|.-. +.
T Consensus 325 q~~~~e~~~p~~~i~~eklf---~~~~p~~lEIG~G~G~~~~~~A~---------------~~p~~~~iGiE~~~---~~ 383 (506)
T PRK01544 325 QQNLLDNELPKYLFSKEKLV---NEKRKVFLEIGFGMGEHFINQAK---------------MNPDALFIGVEVYL---NG 383 (506)
T ss_pred HHHHHHhhhhhhCCCHHHhC---CCCCceEEEECCCchHHHHHHHH---------------hCCCCCEEEEEeeH---HH
Confidence 66666776666653322222 13456789999999987653321 23555555555443 23
Q ss_pred HHHhhHhhHHHHHHhhCCCCCCCCceEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHH
Q 018892 84 IFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPC 163 (349)
Q Consensus 84 LF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~ 163 (349)
+-+.+... .. .+ . .|+.+..--..+..+.||++|||-+|-++.==|=.+ -- .|.++. .
T Consensus 384 ~~~~~~~~----~~-~~--l---~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKk----rh-~krRl~-----~-- 441 (506)
T PRK01544 384 VANVLKLA----GE-QN--I---TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKN----KQ-KKKRIF-----N-- 441 (506)
T ss_pred HHHHHHHH----HH-cC--C---CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCC----CC-cccccc-----C--
Confidence 33333211 11 11 2 466554333445678899999999998887777221 10 122221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEe
Q 018892 164 VLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 164 v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
..||+.=++-|+|||.+.+..
T Consensus 442 -------------~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 442 -------------KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -------------HHHHHHHHHhcCCCCEEEEEc
Confidence 135566688899999997654
No 127
>PRK03612 spermidine synthase; Provisional
Probab=72.58 E-value=17 Score=38.08 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=14.8
Q ss_pred CCceEEEeecCCCCcccHH
Q 018892 28 PTKVAIADLGCSSGPNTLL 46 (349)
Q Consensus 28 ~~~~~iaD~Gcs~G~Ns~~ 46 (349)
+++-+|.|+||++|.-+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ 314 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALRE 314 (521)
T ss_pred CCCCeEEEEcCCccHHHHH
Confidence 4566899999999976543
No 128
>PHA03412 putative methyltransferase; Provisional
Probab=69.82 E-value=1.7 Score=40.97 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=34.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHH--------------HHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhH
Q 018892 30 KVAIADLGCSSGPNTLLVASELIK--------------VVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLA 89 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~--------------~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~ 89 (349)
..+|+|+||.+|.-++.+...... +++.. + . ..+.+.+...|+-..+++.-|..+-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~A-r-~--n~~~~~~~~~D~~~~~~~~~FDlII 119 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLG-K-R--IVPEATWINADALTTEFDTLFDMAI 119 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHH-H-h--hccCCEEEEcchhcccccCCccEEE
Confidence 469999999999998877664311 11111 1 1 2245788888876655554455553
No 129
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=69.60 E-value=26 Score=30.92 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=23.3
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCC
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG 78 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~ 78 (349)
...+|.++||++|--++.+... . ..-.|+++|+|.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~ 79 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE 79 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S-
T ss_pred CCceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch
Confidence 4579999999999887765543 0 136789999875
No 130
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=69.10 E-value=5.7 Score=38.42 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=40.8
Q ss_pred cccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEeccc
Q 018892 121 RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGR 200 (349)
Q Consensus 121 rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~ 200 (349)
-.+++.|+|+..|.+.+||||.- +.+. +-|+.=.++++|||.+.+..-+.
T Consensus 97 ~p~~~~s~d~~lsiavihhlsT~---------------~RR~---------------~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 97 LPFREESFDAALSIAVIHHLSTR---------------ERRE---------------RALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred CCCCCCccccchhhhhhhhhhhH---------------HHHH---------------HHHHHHHHHhcCCCceEEEEehh
Confidence 45789999999999999999941 1111 12334468999999999999887
Q ss_pred CCCCCC
Q 018892 201 KSQDPS 206 (349)
Q Consensus 201 ~~~~~~ 206 (349)
....+.
T Consensus 147 ~q~~~~ 152 (293)
T KOG1331|consen 147 EQHQSS 152 (293)
T ss_pred hccCcc
Confidence 665443
No 131
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=66.75 E-value=86 Score=30.82 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHH
Q 018892 13 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASEL 51 (349)
Q Consensus 13 ~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~i 51 (349)
.+|++-..++... .+...+|+||||++|.=+-.+++.+
T Consensus 61 ~iL~~~~~~Ia~~-i~~~~~lIELGsG~~~Kt~~LL~aL 98 (319)
T TIGR03439 61 EILKKHSSDIAAS-IPSGSMLVELGSGNLRKVGILLEAL 98 (319)
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEECCCchHHHHHHHHHH
Confidence 3445444444322 2445689999999998877766655
No 132
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=65.64 E-value=11 Score=36.17 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHH
Q 018892 174 RDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSE 253 (349)
Q Consensus 174 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ 253 (349)
+|...||++=.+-|+|||+++++-.-|.-. +--.. + .+.+.+...|-.|.-. +-=|.+++|+..+
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~l--S~~~~--i--~~~E~vl~ivp~Gth~---------~ekfi~p~e~~~~ 236 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTIL--SFAGT--I--FLAEIVLRIVPKGTHT---------WEKFINPEELTSI 236 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHH--Hhhcc--c--cHHHHHHHhcCCCCcC---------HHHcCCHHHHHHH
Confidence 467789999999999999999998766531 10000 0 1233333356666433 3357899999999
Q ss_pred HhhCCceEEEEE
Q 018892 254 VIKEGSFTIDHL 265 (349)
Q Consensus 254 ie~~GsF~i~~~ 265 (349)
++.+| +.++.+
T Consensus 237 l~~~~-~~v~~v 247 (282)
T KOG1270|consen 237 LNANG-AQVNDV 247 (282)
T ss_pred HHhcC-cchhhh
Confidence 99986 666555
No 133
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=63.80 E-value=8.3 Score=36.03 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=26.0
Q ss_pred HHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHH
Q 018892 9 SIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 9 ~~~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
+++---|++++..... ..+.-+++|+||++|.-|..+++
T Consensus 57 sr~~~kL~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~ 95 (228)
T TIGR00478 57 SRGGEKLKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQ 95 (228)
T ss_pred hhhHHHHHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHH
Confidence 4455566666665432 12345899999999999885544
No 134
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=63.78 E-value=1e+02 Score=28.80 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHH
Q 018892 11 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 11 ~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
..|.|.+-+..+.. +..-+|.+-||+.|.|.+.+.+
T Consensus 28 pnp~L~~~~~~l~~---~~~~rvLvPgCGkg~D~~~LA~ 63 (226)
T PRK13256 28 PNEFLVKHFSKLNI---NDSSVCLIPMCGCSIDMLFFLS 63 (226)
T ss_pred CCHHHHHHHHhcCC---CCCCeEEEeCCCChHHHHHHHh
Confidence 34566555544321 2346999999999999886654
No 135
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=62.54 E-value=1.1e+02 Score=30.43 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=66.2
Q ss_pred EeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 018892 111 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 190 (349)
Q Consensus 111 ~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G 190 (349)
+--|.|-+++- .|+.- ++|-=|+||=+. .+|...||+.=.+-|+||
T Consensus 223 V~~v~gdmfq~-~P~~d--aI~mkWiLhdwt-------------------------------DedcvkiLknC~~sL~~~ 268 (342)
T KOG3178|consen 223 VEHVAGDMFQD-TPKGD--AIWMKWILHDWT-------------------------------DEDCVKILKNCKKSLPPG 268 (342)
T ss_pred cceeccccccc-CCCcC--eEEEEeecccCC-------------------------------hHHHHHHHHHHHHhCCCC
Confidence 44477999999 99887 777777776322 268899999999999999
Q ss_pred ceEEEEecccCCCCCC---ChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEE
Q 018892 191 GRMVLTFLGRKSQDPS---SKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 266 (349)
Q Consensus 191 G~mvl~~~g~~~~~~~---~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e 266 (349)
|.+++.=.-.+.+... ........+++..+..+= | -.|+.+|++..+.++| |.+-..-
T Consensus 269 GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~---G--------------kert~~e~q~l~~~~g-F~~~~~~ 329 (342)
T KOG3178|consen 269 GKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSG---G--------------KERTLKEFQALLPEEG-FPVCMVA 329 (342)
T ss_pred CEEEEEeccCCCCCCccccccceeehhHHHHHHHhcc---c--------------eeccHHHHHhcchhhc-CceeEEE
Confidence 9998874322221111 111111223333332111 4 3578999999999998 7765443
No 136
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=61.38 E-value=11 Score=36.75 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=21.4
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCC
Q 018892 32 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLND 75 (349)
Q Consensus 32 ~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nD 75 (349)
+|+|+||.-|.-++.+.+ ..|+.++.+.|
T Consensus 161 ~vlDlGCG~Gvlg~~la~---------------~~p~~~vtmvD 189 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAK---------------KSPQAKLTLVD 189 (300)
T ss_pred cEEEeCCCccHHHHHHHH---------------hCCCCeEEEEe
Confidence 999999999988774432 13467777776
No 137
>PLN02366 spermidine synthase
Probab=61.22 E-value=41 Score=32.84 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.5
Q ss_pred CCCceEEEeecCCCCccc
Q 018892 27 SPTKVAIADLGCSSGPNT 44 (349)
Q Consensus 27 ~~~~~~iaD~Gcs~G~Ns 44 (349)
.+++-+|.++||+.|...
T Consensus 89 ~~~pkrVLiIGgG~G~~~ 106 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVL 106 (308)
T ss_pred CCCCCeEEEEcCCccHHH
Confidence 356779999999999853
No 138
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=60.97 E-value=1e+02 Score=33.52 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=16.3
Q ss_pred eEEEeecCCCCcccHHHHH
Q 018892 31 VAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~ 49 (349)
-+|.|+||.+|.-|+.+..
T Consensus 540 ~rVLDlf~gtG~~sl~aa~ 558 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAAL 558 (702)
T ss_pred CeEEEcCCCCCHHHHHHHH
Confidence 4899999999999987653
No 139
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=60.77 E-value=8.2 Score=33.89 Aligned_cols=53 Identities=19% Similarity=0.055 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCC
Q 018892 13 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 79 (349)
Q Consensus 13 ~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~N 79 (349)
-.|.|+......-..++..+++|+|||.|+-|-.+++.. .+.-.|+--|+...
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSST
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecc--------------cccceEEEEecccc
Confidence 345555555431112367999999999999876555433 23578888888766
No 140
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=59.85 E-value=35 Score=33.97 Aligned_cols=105 Identities=20% Similarity=0.303 Sum_probs=66.1
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
+.-+|.|.||++|--|+..... |. -.|+-- |++.+.. ...++-+.++- .
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA------------GA----~~V~aV-----e~S~ia~----~a~~iv~~N~~------~ 108 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA------------GA----RKVYAV-----EASSIAD----FARKIVKDNGL------E 108 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh------------Cc----ceEEEE-----echHHHH----HHHHHHHhcCc------c
Confidence 4568999999999887765432 21 222222 2333332 22223332221 2
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
--+-.+.|.=-+=.+|-..||++.|-|-=+||-. ..=+...|-+|-+=|+
T Consensus 109 ~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~------------------------------EsMldsVl~ARdkwL~ 158 (346)
T KOG1499|consen 109 DVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLY------------------------------ESMLDSVLYARDKWLK 158 (346)
T ss_pred ceEEEeecceEEEecCccceeEEeehhhhHHHHH------------------------------hhhhhhhhhhhhhccC
Confidence 2345566776777888888999999887777762 2234556789999999
Q ss_pred cCceEE
Q 018892 189 AEGRMV 194 (349)
Q Consensus 189 ~GG~mv 194 (349)
|||.++
T Consensus 159 ~~G~i~ 164 (346)
T KOG1499|consen 159 EGGLIY 164 (346)
T ss_pred CCceEc
Confidence 999885
No 141
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=59.32 E-value=16 Score=30.92 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=27.3
Q ss_pred HHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHH
Q 018892 8 ISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 8 ~~~~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
+.....++.+.+... ....++.+|+|+||+.|.-|+.+..
T Consensus 6 i~~~~~~i~~~~~~~--~~~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 6 IERMAELIDSLCDSV--GESKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred HHHHHHHHHHHHHHh--hccCCCCEEEEeCCChhHHHHHHHH
Confidence 344555555555443 1235689999999999999887655
No 142
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=59.31 E-value=15 Score=34.88 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=32.2
Q ss_pred ceEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCceEEEeCCCCCCchH
Q 018892 30 KVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGNDFN 82 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn 82 (349)
.-+|.|+||++|..|..+... .++.+++.. . .+.++++..|...-++.
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~---~--~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETF---A--EDNLTIIEGDALKVDLS 102 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhh---c--cCceEEEEChhhcCCHH
Confidence 358999999999999988773 444444332 1 14588888876655443
No 143
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=58.41 E-value=17 Score=31.66 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=17.5
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 018892 31 VAIADLGCSSGPNTLLVASE 50 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~~ 50 (349)
-+|.|+||++|..|..+++.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER 34 (169)
T ss_pred CEEEEECCCccHHHHHHHhc
Confidence 48999999999999987764
No 144
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=55.87 E-value=6.7 Score=35.85 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.3
Q ss_pred CceEEEeecCCCCcccHHH
Q 018892 29 TKVAIADLGCSSGPNTLLV 47 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~ 47 (349)
+.-+|+|+||.+|.-++.+
T Consensus 45 ~g~~V~DlG~GTG~La~ga 63 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGA 63 (198)
T ss_pred CCCEEEEcCCCcCHHHHHH
Confidence 3457999999999887743
No 145
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=54.66 E-value=27 Score=35.98 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=22.7
Q ss_pred HHHHHHhhcccCCC--CceEEEeecCCCCcccHHHHHHH
Q 018892 15 TEEAMTKLFCSTSP--TKVAIADLGCSSGPNTLLVASEL 51 (349)
Q Consensus 15 l~~ai~~~~~~~~~--~~~~iaD~Gcs~G~Ns~~~~~~i 51 (349)
+++|+.+....... +..+|.|.||++|+-+..+++..
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTT
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHH
Confidence 34555554432211 36899999999999988776653
No 146
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=54.07 E-value=14 Score=28.93 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHh
Q 018892 213 IWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVI 255 (349)
Q Consensus 213 ~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie 255 (349)
+...+..+|+.|-..|.|+++|-|....|.+.|+. ..+.+|+
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sq-qARrLLD 53 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQ-QARRLLD 53 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChHH-HHHHHHH
Confidence 44568899999999999999999999999998874 4455554
No 147
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=51.30 E-value=15 Score=26.12 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhh
Q 018892 213 IWELLATALNNMVSEGLIEEEK 234 (349)
Q Consensus 213 ~~~~l~~al~~mv~eG~i~~e~ 234 (349)
+=..|.++|++|+.+|.|+++-
T Consensus 11 lG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHH
Confidence 3457999999999999999874
No 148
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=50.41 E-value=15 Score=35.83 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=15.9
Q ss_pred CceEEEeecCCCCcccHHH
Q 018892 29 TKVAIADLGCSSGPNTLLV 47 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~ 47 (349)
+.-++.|+||.||--||..
T Consensus 162 ~g~~vlDvGcGSGILaIAa 180 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAA 180 (300)
T ss_pred CCCEEEEecCChhHHHHHH
Confidence 5689999999999887744
No 149
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=50.00 E-value=24 Score=29.32 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhHhhccCceEEEEe
Q 018892 173 QRDFSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 173 ~~D~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
...+.+|++.=++-|+|||+|++.-
T Consensus 20 D~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 20 DEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4568889999999999999999985
No 150
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=49.17 E-value=16 Score=33.24 Aligned_cols=17 Identities=24% Similarity=0.049 Sum_probs=14.2
Q ss_pred eEEEeecCCCCcccHHH
Q 018892 31 VAIADLGCSSGPNTLLV 47 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~ 47 (349)
-+|.|+||++|.-++.+
T Consensus 55 ~~vLDl~~GsG~l~l~~ 71 (199)
T PRK10909 55 ARCLDCFAGSGALGLEA 71 (199)
T ss_pred CEEEEcCCCccHHHHHH
Confidence 48999999999877743
No 151
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=48.71 E-value=13 Score=33.61 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCH
Q 018892 212 YIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSP 247 (349)
Q Consensus 212 ~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~ 247 (349)
.+...+.+.|.+||.+|+|+-|+.-+-|+=|-|+|.
T Consensus 40 IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 40 IVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred cHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 456778999999999999999999999999999864
No 152
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=48.67 E-value=86 Score=31.43 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=40.5
Q ss_pred cCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceE
Q 018892 114 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM 193 (349)
Q Consensus 114 vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~m 193 (349)
+-+-|-...|+++++|++.+.-+...++. -.++|+++++ .++|||+.
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~---------------------~~~~y~Ei~r------------v~kpGG~~ 211 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCHAPD---------------------LEKVYAEIYR------------VLKPGGLF 211 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeecccCCc---------------------HHHHHHHHhc------------ccCCCceE
Confidence 77888999999999999999888777553 2345555543 49999999
Q ss_pred EEEeccc
Q 018892 194 VLTFLGR 200 (349)
Q Consensus 194 vl~~~g~ 200 (349)
++.-..+
T Consensus 212 i~~e~i~ 218 (364)
T KOG1269|consen 212 IVKEWIK 218 (364)
T ss_pred EeHHHHH
Confidence 8875433
No 153
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.40 E-value=12 Score=33.98 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCcchhhhccCCcCcccCCHH
Q 018892 215 ELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPA 248 (349)
Q Consensus 215 ~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~ 248 (349)
-.+.+++..||.||+|..|+.-+-|+=|-|||..
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 4689999999999999999999999999999864
No 154
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=48.16 E-value=22 Score=34.57 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=13.1
Q ss_pred eEEEeecCCCCcccHHH
Q 018892 31 VAIADLGCSSGPNTLLV 47 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~ 47 (349)
-+|.|+||+||--+|.+
T Consensus 163 ~~vLDvG~GSGILaiaA 179 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAA 179 (295)
T ss_dssp SEEEEES-TTSHHHHHH
T ss_pred CEEEEeCCcHHHHHHHH
Confidence 39999999999877643
No 155
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=47.83 E-value=19 Score=33.90 Aligned_cols=22 Identities=9% Similarity=0.142 Sum_probs=17.3
Q ss_pred HHHHHHHhhHhhccCceEEEEe
Q 018892 176 FSLFLKCRSEELVAEGRMVLTF 197 (349)
Q Consensus 176 ~~~FL~~Ra~EL~~GG~mvl~~ 197 (349)
+..++..=.+-|+|||++++..
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 4566666677899999999886
No 156
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=46.99 E-value=92 Score=28.70 Aligned_cols=90 Identities=26% Similarity=0.341 Sum_probs=55.0
Q ss_pred ecCCcccccccCCC--ceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 018892 113 GVPGSFYGRLFPRN--SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 190 (349)
Q Consensus 113 ~vpgSFy~rlfP~~--Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G 190 (349)
-+-|.||. +=|.. ++|+++=-++|+=| |+ +.+++|++|. ++=|+||
T Consensus 101 ~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp-----------------~~R~~Ya~~l-----------~~ll~p~ 148 (218)
T PF05724_consen 101 IYCGDFFE-LPPEDVGKFDLIYDRTFLCAL---PP-----------------EMRERYAQQL-----------ASLLKPG 148 (218)
T ss_dssp EEES-TTT-GGGSCHHSEEEEEECSSTTTS----G-----------------GGHHHHHHHH-----------HHCEEEE
T ss_pred EEEccccc-CChhhcCCceEEEEecccccC---CH-----------------HHHHHHHHHH-----------HHHhCCC
Confidence 34577877 22333 47999999888764 32 3467777543 6789999
Q ss_pred ceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhhCCceEEEEEEEEe
Q 018892 191 GRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSE 269 (349)
Q Consensus 191 G~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~~GsF~i~~~e~~~ 269 (349)
|++++..+-.+.. -.+| |=|.-+.+||++.+. . .|+|+.++..+
T Consensus 149 g~~lLi~l~~~~~---------------------~~~G------------PPf~v~~~ev~~l~~-~-~f~i~~l~~~~ 192 (218)
T PF05724_consen 149 GRGLLITLEYPQG---------------------EMEG------------PPFSVTEEEVRELFG-P-GFEIEELEEED 192 (218)
T ss_dssp EEEEEEEEES-CS---------------------CSSS------------SS----HHHHHHHHT-T-TEEEEEEEEEE
T ss_pred CcEEEEEEEcCCc---------------------CCCC------------cCCCCCHHHHHHHhc-C-CcEEEEEeccc
Confidence 9955544322211 0113 667788999999999 4 49999998854
No 157
>PRK07402 precorrin-6B methylase; Provisional
Probab=45.76 E-value=13 Score=33.21 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.1
Q ss_pred ceEEEeecCCCCcccHHH
Q 018892 30 KVAIADLGCSSGPNTLLV 47 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~ 47 (349)
.-+|.|+||++|..++.+
T Consensus 41 ~~~VLDiG~G~G~~~~~l 58 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEA 58 (196)
T ss_pred CCEEEEeCCCCCHHHHHH
Confidence 458999999999987755
No 158
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=44.94 E-value=9.8 Score=35.53 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=13.4
Q ss_pred CceEEEeecCCCCcccH
Q 018892 29 TKVAIADLGCSSGPNTL 45 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~ 45 (349)
..-+|.|+||++|..++
T Consensus 119 ~~~~VLDiGcGsG~l~i 135 (250)
T PRK00517 119 PGKTVLDVGCGSGILAI 135 (250)
T ss_pred CCCEEEEeCCcHHHHHH
Confidence 34689999999996544
No 159
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=44.60 E-value=1.1e+02 Score=31.77 Aligned_cols=127 Identities=16% Similarity=0.245 Sum_probs=65.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCce
Q 018892 30 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 109 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~~ 109 (349)
.-+|.|++||.|+=|..+.+.+ + .+=.|+-||.-.+=...|-+++... |- .++
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l-----------~---~~g~lvA~D~~~~R~~~L~~nl~r~--------G~-----~nv 166 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALM-----------N---NQGAIVANEYSASRVKVLHANISRC--------GV-----SNV 166 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHc-----------C---CCCEEEEEeCCHHHHHHHHHHHHHc--------CC-----CeE
Confidence 3689999999999998654421 1 1235777776655555555444321 21 333
Q ss_pred EEeecCCcccccccCCCceeEEE----ecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 018892 110 FFTGVPGSFYGRLFPRNSVHLFH----SSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 185 (349)
Q Consensus 110 f~~~vpgSFy~rlfP~~Svh~~~----Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~ 185 (349)
-+...-+.=+...+| .++|.|. ||-.=.|- +.|+... ..++..+.+ ..+-=..+|..=++
T Consensus 167 ~v~~~D~~~~~~~~~-~~fD~ILvDaPCSG~G~~r-k~p~~~~---------~~s~~~v~~-----l~~lQ~~iL~~A~~ 230 (470)
T PRK11933 167 ALTHFDGRVFGAALP-ETFDAILLDAPCSGEGTVR-KDPDALK---------NWSPESNLE-----IAATQRELIESAFH 230 (470)
T ss_pred EEEeCchhhhhhhch-hhcCeEEEcCCCCCCcccc-cCHHHhh---------hCCHHHHHH-----HHHHHHHHHHHHHH
Confidence 333222221222333 2456555 33333332 2343221 112222222 22222456777678
Q ss_pred hhccCceEEEEecc
Q 018892 186 ELVAEGRMVLTFLG 199 (349)
Q Consensus 186 EL~~GG~mvl~~~g 199 (349)
=|+|||+||=..+.
T Consensus 231 ~LkpGG~LVYSTCT 244 (470)
T PRK11933 231 ALKPGGTLVYSTCT 244 (470)
T ss_pred HcCCCcEEEEECCC
Confidence 89999999776644
No 160
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=44.07 E-value=35 Score=32.04 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=18.1
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 018892 30 KVAIADLGCSSGPNTLLVASE 50 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~ 50 (349)
.-+|.|+||+.|.-|..+.+.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~ 50 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR 50 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh
Confidence 358999999999999988764
No 161
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=44.03 E-value=37 Score=33.80 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=41.0
Q ss_pred cCCcccccc---c--CCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 018892 114 VPGSFYGRL---F--PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 188 (349)
Q Consensus 114 vpgSFy~rl---f--P~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 188 (349)
++-+|+.+| + ++-++|++=|=+|||+-=. +. .-...+|..-++-|+
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe-----------------te------------e~ar~~l~Nva~~Lk 228 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE-----------------TE------------ESARIALRNVAKCLK 228 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeeeec-----------------cH------------HHHHHHHHHHHhhcC
Confidence 447777654 3 5666999999999997221 11 112356777899999
Q ss_pred cCceEEEEeccc
Q 018892 189 AEGRMVLTFLGR 200 (349)
Q Consensus 189 ~GG~mvl~~~g~ 200 (349)
|||.|+-|++..
T Consensus 229 pGG~FIgTiPds 240 (389)
T KOG1975|consen 229 PGGVFIGTIPDS 240 (389)
T ss_pred CCcEEEEecCcH
Confidence 999999998644
No 162
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=43.49 E-value=26 Score=33.10 Aligned_cols=16 Identities=44% Similarity=0.823 Sum_probs=13.3
Q ss_pred CCceEEEeecCCCCcc
Q 018892 28 PTKVAIADLGCSSGPN 43 (349)
Q Consensus 28 ~~~~~iaD~Gcs~G~N 43 (349)
+.+--|.|+||.+|--
T Consensus 49 ~~~~~iLDIGCGsGLS 64 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLS 64 (270)
T ss_pred CCCcEEEEeccCCCcc
Confidence 3578899999999965
No 163
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=42.25 E-value=33 Score=31.68 Aligned_cols=54 Identities=13% Similarity=0.315 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHhcCCcchhhhc
Q 018892 169 YEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEGLIEEEKVN 236 (349)
Q Consensus 169 ~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~~mv~eG~i~~e~~d 236 (349)
..|.+.++..-+. + +++||.+| |+..+-+..+ ..+.+|+.+|+.||+|....--
T Consensus 14 Y~qi~~~L~~~I~--~-~~~~G~~L-----------PsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G~ 71 (241)
T PRK10079 14 YQEIAAKLEQELR--Q-HYRCGDYL-----------PAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQGV 71 (241)
T ss_pred HHHHHHHHHHHHh--c-ccCCCCcC-----------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 3577778877774 4 89999987 3322222222 3689999999999999887644
No 164
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=41.91 E-value=22 Score=22.55 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCcchhhhc
Q 018892 219 TALNNMVSEGLIEEEKVN 236 (349)
Q Consensus 219 ~al~~mv~eG~i~~e~~d 236 (349)
..|.+|-..|.|+++++.
T Consensus 6 ~~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHHcCCCCHHHHH
Confidence 457888999999999875
No 165
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=40.43 E-value=45 Score=31.77 Aligned_cols=54 Identities=22% Similarity=0.312 Sum_probs=35.7
Q ss_pred cCCcccc--cccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCc
Q 018892 114 VPGSFYG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEG 191 (349)
Q Consensus 114 vpgSFy~--rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 191 (349)
+.|.=|+ +=|+++|+|++. +.|+-+.- .-+.|++.|-+.|. +-|+|||
T Consensus 190 ilGD~~e~V~~~~D~sfDaIi---------HDPPRfS~--------------AgeLYseefY~El~-------RiLkrgG 239 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAII---------HDPPRFSL--------------AGELYSEEFYRELY-------RILKRGG 239 (287)
T ss_pred ecccHHHHHhcCCccccceEe---------eCCCccch--------------hhhHhHHHHHHHHH-------HHcCcCC
Confidence 4455554 448899999864 35766531 23778876666554 4568999
Q ss_pred eEEEEe
Q 018892 192 RMVLTF 197 (349)
Q Consensus 192 ~mvl~~ 197 (349)
+|+=-.
T Consensus 240 rlFHYv 245 (287)
T COG2521 240 RLFHYV 245 (287)
T ss_pred cEEEEe
Confidence 997665
No 166
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=39.68 E-value=42 Score=32.49 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=34.7
Q ss_pred ceEEEeecCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCceEEEeCCCCCCch
Q 018892 30 KVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGNDF 81 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDF 81 (349)
.-+|.|+||+.|.-|..++.. .++.+++.....+. .+.++++..|....|+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-ASKLEVIEGDALKTEF 99 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCHhhhcc
Confidence 358999999999999887764 45666655432221 2458888888765554
No 167
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=39.45 E-value=31 Score=32.11 Aligned_cols=49 Identities=27% Similarity=0.567 Sum_probs=30.9
Q ss_pred cCCcccccccCCCceeEEEecccccccccCCCCcCCCCceeEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018892 114 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC 182 (349)
Q Consensus 114 vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~n~~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~ 182 (349)
-||.+|+..||.+- ++ .|+.|.+. -|-+...++ +-.+|..+|..+||.-
T Consensus 133 ~~~~~~N~~fpg~~------------ia-MP~~L~~~--~v~y~dGt~-----at~~q~a~DVv~FL~w 181 (219)
T PF02167_consen 133 RPGGYYNPYFPGGA------------IA-MPPPLSDG--QVEYDDGTP-----ATVDQMAKDVVNFLAW 181 (219)
T ss_dssp STTSEEETTSTTSE------------ES-S--TSSTT--SS-BTTTB--------HHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCc------------cc-chhhhhhh--cccccCCCc-----chHHHHHHHHHHHHHH
Confidence 68999999998754 34 58777652 333333333 3368999999999975
No 168
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=39.33 E-value=34 Score=34.22 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHhHHHHHHHHHhhccc-----CCCCceEEEeecCCCCcccHHHH
Q 018892 9 SIAKPITEEAMTKLFCS-----TSPTKVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 9 ~~~~~~l~~ai~~~~~~-----~~~~~~~iaD~Gcs~G~Ns~~~~ 48 (349)
+++.-.|++|+...... ....-.++.|+|||.|+-|-.++
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHH
Confidence 44555788887765432 12345799999999999986554
No 169
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=38.90 E-value=2.4e+02 Score=26.82 Aligned_cols=127 Identities=13% Similarity=0.139 Sum_probs=65.3
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHHHHHhhHhhHHHHHHhhCCCCCCCCc
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 108 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~LF~~l~~~~~~~~~~~~~~~~~~~~ 108 (349)
.+-+|.|+||+.|.-+ .++. +.++ ...+++.-| ++.....+.+.|-...... ..
T Consensus 33 ~P~~vLD~GsGpGta~-wAa~-------~~~~------~~~~~~~vd-~s~~~~~l~~~l~~~~~~~-----------~~ 86 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTAL-WAAR-------EVWP------SLKEYTCVD-RSPEMLELAKRLLRAGPNN-----------RN 86 (274)
T ss_pred CCceEEEecCChHHHH-HHHH-------HHhc------Cceeeeeec-CCHHHHHHHHHHHhccccc-----------cc
Confidence 5679999999998643 3332 2231 113455556 4555555555543211000 00
Q ss_pred eEEeecCCcccccccCCCceeEEEecccccccccCCCCcCC--------CCcee-EEcCCCCHHHHHHHHHHHHHHHHHH
Q 018892 109 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES--------NKGNI-FMASTSPPCVLTAYYEQFQRDFSLF 179 (349)
Q Consensus 109 ~f~~~vpgSFy~rlfP~~Svh~~~Ss~alHWLS~~P~~l~~--------n~~~i-~~~~ss~~~v~~ay~~Q~~~D~~~F 179 (349)
.-....++....+-..-|++.++++|-=|.. ....+ -.+.+ .|-..+ ...+...
T Consensus 87 ---~~~~~~~~~~~~~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~~LVlVEpGt------------~~Gf~~i 149 (274)
T PF09243_consen 87 ---AEWRRVLYRDFLPFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAPVLVLVEPGT------------PAGFRRI 149 (274)
T ss_pred ---chhhhhhhcccccCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccCcEEEEcCCC------------hHHHHHH
Confidence 0122344444444333499999999875442 11100 11122 232222 2356777
Q ss_pred HHHhhHhhccCceEEEEec
Q 018892 180 LKCRSEELVAEGRMVLTFL 198 (349)
Q Consensus 180 L~~Ra~EL~~GG~mvl~~~ 198 (349)
+++|..=+..|+.++.=++
T Consensus 150 ~~aR~~l~~~~~~v~APCp 168 (274)
T PF09243_consen 150 AEARDQLLEKGAHVVAPCP 168 (274)
T ss_pred HHHHHHHhhCCCceECCCc
Confidence 7788777777777765543
No 170
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=38.75 E-value=23 Score=33.96 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=22.3
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCC
Q 018892 32 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDL 76 (349)
Q Consensus 32 ~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDl 76 (349)
+|.|+||+||.-++.+... .|...|+..|+
T Consensus 113 ~ilDlGTGSG~iai~la~~---------------~~~~~V~a~Di 142 (280)
T COG2890 113 RILDLGTGSGAIAIALAKE---------------GPDAEVIAVDI 142 (280)
T ss_pred cEEEecCChHHHHHHHHhh---------------CcCCeEEEEEC
Confidence 9999999999887744321 24578888885
No 171
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=38.65 E-value=32 Score=32.54 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHH
Q 018892 11 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 11 ~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
.---|++|+.+.-. ..+--++.|+|+|+|+-|--+++
T Consensus 63 G~~KL~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq 99 (245)
T COG1189 63 GGLKLEKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQ 99 (245)
T ss_pred HHHHHHHHHHhcCc--CCCCCEEEEecCCCccHHHHHHH
Confidence 34457777776533 34567899999999999875543
No 172
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=37.23 E-value=41 Score=32.52 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=27.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCC
Q 018892 29 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPG 78 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~ 78 (349)
++++|-.-|||+|-=.-.+.--+.+.+.. ....++|+-.|+-.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~-------~~~~~~I~atDIs~ 157 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGT-------APGRWKVFASDIDT 157 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcc-------cCCCcEEEEEECCH
Confidence 46999999999996544333333333321 11258999999754
No 173
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=36.94 E-value=42 Score=24.18 Aligned_cols=40 Identities=20% Similarity=0.436 Sum_probs=25.7
Q ss_pred CcccHHHHHHHHHHHHHHHHh-cCCCCCceEEEeCCCCCCch
Q 018892 41 GPNTLLVASELIKVVNKICDK-LGSQLPEFQVFLNDLPGNDF 81 (349)
Q Consensus 41 G~Ns~~~~~~ii~~i~~~~~~-~~~~~p~~~v~~nDlP~NDF 81 (349)
|. |-.--+.+++.|.+...+ .+.++..+.|+++|.|..+|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~ 51 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTY 51 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhhe
Confidence 44 555555566655555432 46566679999999886544
No 174
>PRK04148 hypothetical protein; Provisional
Probab=36.34 E-value=71 Score=27.45 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=27.5
Q ss_pred CceEEEeecCCCCc-ccHHHHH------------HHHHHHHHHHHhcCCCCCceEEEeCCCCCCchH
Q 018892 29 TKVAIADLGCSSGP-NTLLVAS------------ELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFN 82 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~-Ns~~~~~------------~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn 82 (349)
+..+|+|.||+.|. -+..+.+ ..++..++. -++++..|+-..|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLE 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHH
Confidence 34789999999997 4433332 122222211 267888888777765
No 175
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=36.21 E-value=71 Score=29.25 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=30.4
Q ss_pred ceEEEeecCCCCcccHHHH---------------------HHHHHHHHHHHHhcCCCCCceEEEeCCCCCCchHH
Q 018892 30 KVAIADLGCSSGPNTLLVA---------------------SELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNT 83 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~---------------------~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~NDFn~ 83 (349)
.-+..|+||+.|.-.+.+. ....+.+++.++..|..+.++++..-|.-.+||..
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 4689999999997655322 22333344444445555667888888877777655
No 176
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=35.73 E-value=22 Score=31.80 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.3
Q ss_pred CceEEEeecCCCCcccHHH
Q 018892 29 TKVAIADLGCSSGPNTLLV 47 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~Ns~~~ 47 (349)
..-+|+|+||++|.-++.+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~ 58 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEA 58 (198)
T ss_pred CcCEEEEeCCcCCHHHHHH
Confidence 3468999999999877654
No 177
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=35.47 E-value=77 Score=22.05 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCCcccHHHHHHHHHHHHHHHHh-cCCCCCceEEEeCCCCCCchH
Q 018892 39 SSGPNTLLVASELIKVVNKICDK-LGSQLPEFQVFLNDLPGNDFN 82 (349)
Q Consensus 39 s~G~Ns~~~~~~ii~~i~~~~~~-~~~~~p~~~v~~nDlP~NDFn 82 (349)
..|+ |-.--+++.++|.+...+ .|.++..+.|.++|.|..||.
T Consensus 8 ~~gr-t~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~~ 51 (58)
T cd00491 8 LEGR-TDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKENWG 51 (58)
T ss_pred cCCC-CHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhce
Confidence 4466 466666666666665433 566677899999998887763
No 178
>PF14904 FAM86: Family of unknown function
Probab=35.37 E-value=40 Score=27.57 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=26.6
Q ss_pred hHHHHHhhhhHHHHh--hchhHHHHHHHHHHHH
Q 018892 296 ANCMRAVAEPLLVSQ--FGEAIIDELFKRYREI 326 (349)
Q Consensus 296 a~~iRA~~ep~l~~h--fg~~i~delF~r~~~~ 326 (349)
..|.|.|...+|.+| .+.++.|+||+.|++.
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 578999999999965 5689999999999864
No 179
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=34.27 E-value=82 Score=30.87 Aligned_cols=59 Identities=25% Similarity=0.297 Sum_probs=39.8
Q ss_pred HHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCccc--CCHHHHHHHHhhC
Q 018892 180 LKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYT--PSPAEIKSEVIKE 257 (349)
Q Consensus 180 L~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~--~s~~E~~~~ie~~ 257 (349)
|+-=+.-+.|||.||.+. .+-. | -.+.+..+|...- +| .||.+ ||..|..++++.+
T Consensus 232 l~gl~~al~pgG~lIyTg--QPwH-P-------Qle~IAr~LtsHr-~g-----------~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 232 LAGLARALEPGGYLIYTG--QPWH-P-------QLEMIARVLTSHR-DG-----------KAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred HHHHHHHhCCCcEEEEcC--CCCC-c-------chHHHHHHHhccc-CC-----------CceEEEecCHHHHHHHHHHc
Confidence 445577899999998764 2211 1 1355777775542 23 36765 6999999999999
Q ss_pred CceE
Q 018892 258 GSFT 261 (349)
Q Consensus 258 GsF~ 261 (349)
| |+
T Consensus 290 G-F~ 292 (311)
T PF12147_consen 290 G-FE 292 (311)
T ss_pred C-Cc
Confidence 8 64
No 180
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=34.14 E-value=58 Score=29.15 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHhh
Q 018892 213 IWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIK 256 (349)
Q Consensus 213 ~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~ie~ 256 (349)
+|+-+-+-++.|+++|.|+++..+ ......+++|+-+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 689999999999999999998766 45568999999888764
No 181
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=33.96 E-value=88 Score=33.34 Aligned_cols=69 Identities=25% Similarity=0.455 Sum_probs=41.3
Q ss_pred eEEcCCCCHHHHH------HHHHHHHHHH----HHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHH------
Q 018892 154 IFMASTSPPCVLT------AYYEQFQRDF----SLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELL------ 217 (349)
Q Consensus 154 i~~~~ss~~~v~~------ay~~Q~~~D~----~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l------ 217 (349)
||+.+-+|.+|++ +|++||+||. ..|=+--.+|| .+|... +-.|+..+
T Consensus 390 iHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnel---------------ddp~ft-spvmyk~v~aReSv 453 (913)
T KOG0451|consen 390 IHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNEL---------------DDPTFT-SPVMYKEVEARESV 453 (913)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccc---------------cCcccc-ChhHHHHHHhhhcc
Confidence 6788888888766 4999999984 33433222332 233221 11233222
Q ss_pred -HHHHHHHHhcCCcchhhhccC
Q 018892 218 -ATALNNMVSEGLIEEEKVNCF 238 (349)
Q Consensus 218 -~~al~~mv~eG~i~~e~~d~f 238 (349)
..-...+++||++++|++-.+
T Consensus 454 Pdlya~~L~~eg~~tee~vkE~ 475 (913)
T KOG0451|consen 454 PDLYAQQLAKEGVLTEEKVKEM 475 (913)
T ss_pred cHHHHHHHHhcccccHHHHHHH
Confidence 233567799999999987644
No 182
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=33.70 E-value=46 Score=32.22 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 018892 30 KVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
.-+|.|+||++|..++.+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 36899999999999887654
No 183
>PHA02734 coat protein; Provisional
Probab=33.62 E-value=28 Score=29.55 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHHHHHHHH---hcCCCCCceEEEeCCCCCCc
Q 018892 42 PNTLLVASELIKVVNKICD---KLGSQLPEFQVFLNDLPGND 80 (349)
Q Consensus 42 ~Ns~~~~~~ii~~i~~~~~---~~~~~~p~~~v~~nDlP~ND 80 (349)
.|+-.++-.||.+|++... ..|..-.|-+|||+..|.|-
T Consensus 49 e~~k~aIHeiIK~IreA~kp~rn~g~gfkeawvyfsqvpena 90 (149)
T PHA02734 49 ANAKAAIHAIIKMIKDAMKPLRNKGKGFKEAWVYFSQVPENA 90 (149)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCchhHHHHhhhcCcccC
Confidence 4678899999999998853 34444457788888888873
No 184
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=32.92 E-value=53 Score=30.04 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHhcCCcchhhhc-cC
Q 018892 171 QFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEGLIEEEKVN-CF 238 (349)
Q Consensus 171 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~~mv~eG~i~~e~~d-~f 238 (349)
|.+.++..-+. +.+++||.+| |+..+-+..+ ..+.+||++|+.||+|....-- +|
T Consensus 4 qi~~~l~~~I~--~g~~~~G~~L-----------PsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G~GTf 63 (233)
T TIGR02404 4 QIYQDLEQKIT--HGQYKEGDYL-----------PSEHELMDQYGASRETVRKALNLLTEAGYIQKIQGKGSI 63 (233)
T ss_pred HHHHHHHHHHH--hCCCCCCCCC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCceEE
Confidence 44455554443 5788888776 3322222222 3689999999999999988754 44
No 185
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=32.70 E-value=48 Score=33.79 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=16.0
Q ss_pred eEEEeecCCCCcccHHHHH
Q 018892 31 VAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~ 49 (349)
-+|+|+||++|..|+.+..
T Consensus 299 ~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CEEEEEeccCCHHHHHHHH
Confidence 5899999999998886643
No 186
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=32.07 E-value=51 Score=32.88 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.1
Q ss_pred eEEEeecCCCCcccHHHHH
Q 018892 31 VAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~~ 49 (349)
-+|+|+||++|..|+.+.+
T Consensus 235 ~~vLDL~cG~G~~~l~la~ 253 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAG 253 (374)
T ss_pred CEEEEccCCccHHHHHHhh
Confidence 4899999999999887663
No 187
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=32.02 E-value=48 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhccCce
Q 018892 165 LTAYYEQFQRDFSLFLKCRSEELVAEGR 192 (349)
Q Consensus 165 ~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 192 (349)
.+.|++-|..||..++..++.+||.-|.
T Consensus 12 ~~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 12 CEEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 3577888889999999999999998764
No 188
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=31.55 E-value=19 Score=23.55 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=8.6
Q ss_pred CcccCCHHHHHHHHh
Q 018892 241 PQYTPSPAEIKSEVI 255 (349)
Q Consensus 241 P~y~~s~~E~~~~ie 255 (349)
|.+.||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 788999999887654
No 189
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=31.33 E-value=50 Score=29.60 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHH
Q 018892 12 KPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 12 ~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
...+.+++-.+..... .--++.|++|++|.-++.+++
T Consensus 33 ~~~vrea~f~~l~~~~-~g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 33 TRVVRELFFNILRPEI-QGAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred hHHHHHHHHHHHHHhc-CCCEEEEecCCCcHHHHHHHh
Confidence 3445555554432211 235799999999998886654
No 190
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=31.23 E-value=66 Score=29.35 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHhcCCcchhhhc-cC
Q 018892 171 QFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEGLIEEEKVN-CF 238 (349)
Q Consensus 171 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~~mv~eG~i~~e~~d-~f 238 (349)
|.+.++..-+. +.|++||.+| |+..+-+..| ..+.+||..|+.||+|....-- +|
T Consensus 5 qi~~~l~~~I~--~g~~~~g~~L-----------PsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G~Gtf 64 (230)
T TIGR02018 5 RIKQDILERIR--SGEWPPGHRI-----------PSEHELVAQYGCSRMTVNRALRELTDAGLLERRQGVGTF 64 (230)
T ss_pred HHHHHHHHHHH--hCCCCCCCcC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCEEE
Confidence 44455554443 6788888876 3322222122 3689999999999999987655 44
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=30.39 E-value=55 Score=30.51 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.3
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 018892 30 KVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
.-+|.|+||+.|.-|..+.+
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHH
Confidence 46899999999998776554
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=28.17 E-value=2.2e+02 Score=27.67 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhHhhccCceEEEEec
Q 018892 171 QFQRDFSLFLKCRSEELVAEGRMVLTFL 198 (349)
Q Consensus 171 Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 198 (349)
+=-.-+..+|..=.+-|+|||+|++.-.
T Consensus 210 ~El~~L~~~L~~~~~~L~~gGrl~visf 237 (296)
T PRK00050 210 DELEELERALEAALDLLKPGGRLAVISF 237 (296)
T ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3445688999998999999999988763
No 193
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=28.00 E-value=74 Score=28.99 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHhcCCcchhhhc
Q 018892 170 EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEGLIEEEKVN 236 (349)
Q Consensus 170 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~~mv~eG~i~~e~~d 236 (349)
.|-+.++..-+. +.+++||-+| |+..+-+..+ ..+.+||..|+.||+|....--
T Consensus 11 ~~i~~~l~~~I~--~g~~~~G~~L-----------PsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G~ 68 (238)
T TIGR02325 11 RQIADKIEQEIA--AGHLRAGDYL-----------PAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQGR 68 (238)
T ss_pred HHHHHHHHHHHH--cCCCCCCCcC-----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 455556555443 5788888877 3322222222 3699999999999999987644
No 194
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=27.17 E-value=70 Score=30.84 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=34.1
Q ss_pred eEEEeecCCCCcccHHHH------------HHHHHHHHHHHHhcCCCCCce-----EEEeCCCCCCchHHHHHh
Q 018892 31 VAIADLGCSSGPNTLLVA------------SELIKVVNKICDKLGSQLPEF-----QVFLNDLPGNDFNTIFRS 87 (349)
Q Consensus 31 ~~iaD~Gcs~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~p~~-----~v~~nDlP~NDFn~LF~~ 87 (349)
.+|.|.||+.|--|..+. ...|++-+++ +.. .|+.- .+-+.|+--+|+..-|..
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~--dP~~~~~~~y~l~~~~~~~E~~~~~fDa 161 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKM--DPVLEGAIAYRLEYEDTDVEGLTGKFDA 161 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhc--Cchhccccceeeehhhcchhhcccccce
Confidence 679999999999988654 4566666665 222 22222 244666666666555544
No 195
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=26.98 E-value=80 Score=26.61 Aligned_cols=39 Identities=23% Similarity=0.588 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHH
Q 018892 213 IWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEV 254 (349)
Q Consensus 213 ~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~i 254 (349)
.|+-+-+-++.|+++|.|+++..+ ......+++|+-+.|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 477788888999999999999766 677788998876643
No 196
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=26.63 E-value=62 Score=31.81 Aligned_cols=20 Identities=15% Similarity=0.415 Sum_probs=16.4
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 018892 30 KVAIADLGCSSGPNTLLVAS 49 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~~ 49 (349)
.-+|.|+||++|.+++.+..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCEEEEEeCCccHHHHHHHH
Confidence 46899999999999876543
No 197
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=26.47 E-value=83 Score=28.86 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcccHHHHHHHH
Q 018892 11 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELI 52 (349)
Q Consensus 11 ~~~~l~~ai~~~~~~~~~~~~~iaD~Gcs~G~Ns~~~~~~ii 52 (349)
....||++..++-.. .+--.+++||+||--|-.+++.+.
T Consensus 28 LlDaLekd~~eL~~~---~~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 28 LLDALEKDAAELKGH---NPEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred HHHHHHHHHHHHhhc---CceeEEEecCCcchHHHHHHHhcC
Confidence 345677777766422 256788999999976665555443
No 198
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=25.91 E-value=2e+02 Score=21.82 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=28.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHH-HhcCCCCCceEEEeCCCCCCchH
Q 018892 38 CSSGPNTLLVASELIKVVNKIC-DKLGSQLPEFQVFLNDLPGNDFN 82 (349)
Q Consensus 38 cs~G~Ns~~~~~~ii~~i~~~~-~~~~~~~p~~~v~~nDlP~NDFn 82 (349)
|..|..+-..=..+++.|.+.. +.+|.++..+.|+++|.|..|+-
T Consensus 8 ~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~~~w~ 53 (69)
T COG1942 8 LFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPPENWG 53 (69)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecChhhee
Confidence 4446666654444444444432 22577777899999998877653
No 199
>PRK14999 histidine utilization repressor; Provisional
Probab=25.75 E-value=84 Score=28.93 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHhcCCcchhhhc-cC
Q 018892 170 EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEGLIEEEKVN-CF 238 (349)
Q Consensus 170 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~~mv~eG~i~~e~~d-~f 238 (349)
.|-+.++..-+. ..+++||.+| |+..+-+..+ ..+.+||..|+.||+|....-- +|
T Consensus 15 ~qi~~~i~~~I~--~g~~~~G~~L-----------PsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~GkGTf 75 (241)
T PRK14999 15 ETVKQDICKKIA--GGVWQPHDRI-----------PSEAELVAQYGFSRMTINRALRELTDEGWLVRLQGVGTF 75 (241)
T ss_pred HHHHHHHHHHHH--cCCCCCCCcC-----------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCcEEE
Confidence 455666666554 5788888877 3322222222 3689999999999999987644 44
No 200
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=25.70 E-value=5.3e+02 Score=28.55 Aligned_cols=135 Identities=17% Similarity=0.278 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEecccCCCC-CCChhhhHHHHHHHHHHHHHHhcCCc---chhhhccC
Q 018892 163 CVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQD-PSSKECCYIWELLATALNNMVSEGLI---EEEKVNCF 238 (349)
Q Consensus 163 ~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~-~~~~~~~~~~~~l~~al~~mv~eG~i---~~e~~d~f 238 (349)
.....|+.+ |..+|++|.--=.+.++|++ |+|-++-| |- ..++|..|+++-.. ++| += -+.+.
T Consensus 198 p~~aiyqAr----f~kYL~~RGl~~~~~~~v~a-fLGDgEmDEpe------s~gAi~~A~re~Ld-NlifVinc-NlQrL 264 (887)
T COG2609 198 PIQAIYQAR----FLKYLEARGLKDTSDQKVWA-FLGDGEMDEPE------SRGAITEAAREKLD-NLIFVINC-NLQRL 264 (887)
T ss_pred HHHHHHHHH----HHHHHHhcCCcCCCCCeEEE-EecCcccCCch------hhHHHHHHHHhcCC-ceEEEEec-chhhc
Confidence 356677655 55788888877777888765 45554432 21 24566666533211 000 00 01122
Q ss_pred CcCcccC--CHHHHHHHHhhCCceEEEEEEEEeecccccccCcccccccccccccchhhhHHHHHhhhhHHHH---hhch
Q 018892 239 NIPQYTP--SPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVS---QFGE 313 (349)
Q Consensus 239 n~P~y~~--s~~E~~~~ie~~GsF~i~~~e~~~~~w~~~~~~~~~~d~~~~~~~~~~~~a~~iRA~~ep~l~~---hfg~ 313 (349)
.-|+-.. =..|++.+++..| |.|.++. .-+.|+.--. +..+..+..|+-........+ .=|.
T Consensus 265 DgpVrgngkiiqelE~~FrgAG-W~Vikvi-Wg~~wd~ll~-----------kd~~gkL~~~m~e~~dgdyqt~kakdGa 331 (887)
T COG2609 265 DGPVRGNGKIIQELEGIFRGAG-WNVIKVI-WGRRWDELLA-----------KDTGGKLRQLMNETVDGDYQTFKAKDGA 331 (887)
T ss_pred CCcccCCchhHHHHHHHhccCC-ceEEEEE-ecccHHHHhc-----------ccCcchHHHHHHhcccchhhhhcccccH
Confidence 2344444 5789999999888 8887773 3355664111 112334555555554443332 1134
Q ss_pred hHHHHHHHHH
Q 018892 314 AIIDELFKRY 323 (349)
Q Consensus 314 ~i~delF~r~ 323 (349)
.+.+.||.+|
T Consensus 332 yvRehff~~~ 341 (887)
T COG2609 332 YVREHFFGRY 341 (887)
T ss_pred HHHHHHhccC
Confidence 4566666664
No 201
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=25.62 E-value=34 Score=32.49 Aligned_cols=66 Identities=12% Similarity=0.240 Sum_probs=43.8
Q ss_pred HHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHH
Q 018892 175 DFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEV 254 (349)
Q Consensus 175 D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~~i 254 (349)
++..++-.-+.-|+|||.|.+..-..+..+. ++ + | ..--|.-+..=|++.+
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~------f~---l----------~----------ps~RyAH~~~YVr~~l 253 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVETLPDDGG------FV---L----------G----------PSQRYAHSESYVRALL 253 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecccCCCCC------ee---c----------c----------hhhhhccchHHHHHHH
Confidence 5666677779999999999888733322110 00 0 0 1124777888899999
Q ss_pred hhCCceEEEEEEEEee
Q 018892 255 IKEGSFTIDHLEVSEV 270 (349)
Q Consensus 255 e~~GsF~i~~~e~~~~ 270 (349)
+..| |.|..++....
T Consensus 254 ~~~G-l~~i~~~~tti 268 (287)
T COG4976 254 AASG-LEVIAIEDTTI 268 (287)
T ss_pred HhcC-ceEEEeecccc
Confidence 9998 88888875543
No 202
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=25.02 E-value=37 Score=28.09 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=13.8
Q ss_pred EEEeecCCCCcccHHHH
Q 018892 32 AIADLGCSSGPNTLLVA 48 (349)
Q Consensus 32 ~iaD~Gcs~G~Ns~~~~ 48 (349)
+|.|+||..|.-|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999998876543
No 203
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=24.97 E-value=65 Score=26.63 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHH-HHHhhCCceEEEEEEEEe
Q 018892 215 ELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIK-SEVIKEGSFTIDHLEVSE 269 (349)
Q Consensus 215 ~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~-~~ie~~GsF~i~~~e~~~ 269 (349)
..|.++|+||+.+|.|+++-.- --+-.|..|+.|.- .-+.+.=+|+ .++.++.
T Consensus 14 ~~L~~tLDe~v~~g~itp~la~-~VL~~FDKSi~~al~~~vk~kmsfk-g~L~tYr 67 (109)
T KOG3463|consen 14 NALQKTLDELVSDGVITPSLAK-KVLEQFDKSINEALNDKVKNKMSFK-GKLDTYR 67 (109)
T ss_pred HHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHHHHHhcccceeee-eccceee
Confidence 4699999999999999987422 12222333333322 1222223588 8887774
No 204
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=24.76 E-value=70 Score=23.70 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=23.0
Q ss_pred ccCCcCcccCCHHHHHHHHh----hCCceEEEEE
Q 018892 236 NCFNIPQYTPSPAEIKSEVI----KEGSFTIDHL 265 (349)
Q Consensus 236 d~fn~P~y~~s~~E~~~~ie----~~GsF~i~~~ 265 (349)
.+|-+|+|..|.+|-..+-+ ..| |.|.++
T Consensus 25 ~sfEVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRi 57 (63)
T PHA00457 25 QSFEVPVYAKSLEEATELAEWQYVPAG-FVVTRI 57 (63)
T ss_pred ceEEeeeecccHHHHHHHHHHhhhccC-cEEEEe
Confidence 47889999999999877666 345 888776
No 205
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=24.60 E-value=37 Score=28.31 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=11.8
Q ss_pred CceEEEeecCCCCc
Q 018892 29 TKVAIADLGCSSGP 42 (349)
Q Consensus 29 ~~~~iaD~Gcs~G~ 42 (349)
.....+|+||+.|-
T Consensus 58 ~~~~FVDlGCGNGL 71 (112)
T PF07757_consen 58 KFQGFVDLGCGNGL 71 (112)
T ss_pred CCCceEEccCCchH
Confidence 56789999999884
No 206
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=24.41 E-value=70 Score=27.32 Aligned_cols=88 Identities=19% Similarity=0.330 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEE-EecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhc-cC
Q 018892 161 PPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVL-TFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVN-CF 238 (349)
Q Consensus 161 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl-~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d-~f 238 (349)
|..+.+.|++||++||...|+.|..+=+...--|= .+..-.+. .--+..-|..|..=+.-|..+|++.-++.+ ..
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~krV~AN~vYnEyI~Dk~H---vHMNaT~W~sLT~FvkyLgr~G~~~Vdetekg~ 86 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGTKRVNANKVYNEYIQDKDH---VHMNATRWTSLTEFVKYLGREGKCKVDETEKGW 86 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS-EEEHHHHHHHHTTSS-------GGGSS-SSHHHHHHHHTTTTSEEEEEETTEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCeechhHHHHHHhcCccc---eeecccccchHHHHHHHHhhCCeeEeecCCCce
Confidence 44578999999999999999988644332110000 00111110 001223466666667777777777666655 45
Q ss_pred CcCcccCCHHHHH
Q 018892 239 NIPQYTPSPAEIK 251 (349)
Q Consensus 239 n~P~y~~s~~E~~ 251 (349)
.+-+..++++.+.
T Consensus 87 ~I~yID~~pe~l~ 99 (127)
T PF10357_consen 87 FISYIDRSPETLA 99 (127)
T ss_dssp EEEE--SSHHHHH
T ss_pred EEEeeCCCHHHHH
Confidence 5555566666553
No 207
>smart00400 ZnF_CHCC zinc finger.
Probab=24.39 E-value=64 Score=22.83 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=16.0
Q ss_pred EEEeecCCCCcccHHHHHHH
Q 018892 32 AIADLGCSSGPNTLLVASEL 51 (349)
Q Consensus 32 ~iaD~Gcs~G~Ns~~~~~~i 51 (349)
..=++||..|+|.|-+++.+
T Consensus 23 ~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 23 FFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred EEEEeCCCCCCCHHHHHHHH
Confidence 34579999999988777765
No 208
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.00 E-value=53 Score=29.84 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHH
Q 018892 212 YIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPA 248 (349)
Q Consensus 212 ~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~ 248 (349)
.+|..+.++|..||.+|++..|++-.-|.=|-|||..
T Consensus 39 Iv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a 75 (203)
T KOG3433|consen 39 IVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEA 75 (203)
T ss_pred eehhHHHHHHHHHhccchHHHHHhcccccccccchHH
Confidence 4677899999999999999999999999999999853
No 209
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=23.58 E-value=3.3e+02 Score=26.17 Aligned_cols=65 Identities=29% Similarity=0.371 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHH
Q 018892 173 QRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKS 252 (349)
Q Consensus 173 ~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~fn~P~y~~s~~E~~~ 252 (349)
++++-.+|+.=.+=|||||. .+.+ | |.. +-++ ++ + +. +-...-.|.||++.
T Consensus 178 A~Ni~~Yi~tI~~lLkpgG~-WIN~-G-----PLl----yh~~-------~~---~-~~-------~~~sveLs~eEi~~ 228 (270)
T PF07942_consen 178 AENIIEYIETIEHLLKPGGY-WINF-G-----PLL----YHFE-------PM---S-IP-------NEMSVELSLEEIKE 228 (270)
T ss_pred hHHHHHHHHHHHHHhccCCE-EEec-C-----Ccc----ccCC-------CC---C-CC-------CCcccCCCHHHHHH
Confidence 45677788888899999993 3444 2 210 0000 00 0 00 00126678999999
Q ss_pred HHhhCCceEEEEEEE
Q 018892 253 EVIKEGSFTIDHLEV 267 (349)
Q Consensus 253 ~ie~~GsF~i~~~e~ 267 (349)
++++-| |++++-+.
T Consensus 229 l~~~~G-F~~~~~~~ 242 (270)
T PF07942_consen 229 LIEKLG-FEIEKEES 242 (270)
T ss_pred HHHHCC-CEEEEEEE
Confidence 999999 99988776
No 210
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=22.47 E-value=1e+02 Score=31.19 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.3
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018892 30 KVAIADLGCSSGPNTLLVA 48 (349)
Q Consensus 30 ~~~iaD~Gcs~G~Ns~~~~ 48 (349)
.-+|+|+||++|..|+.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 3589999999999998765
No 211
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=22.18 E-value=49 Score=29.33 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.7
Q ss_pred EEEeecCCCCcccHHHHHH
Q 018892 32 AIADLGCSSGPNTLLVASE 50 (349)
Q Consensus 32 ~iaD~Gcs~G~Ns~~~~~~ 50 (349)
+|+|.-|..|+||+.+...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6899999999999977765
No 212
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.95 E-value=1.2e+02 Score=21.41 Aligned_cols=44 Identities=14% Similarity=0.322 Sum_probs=28.6
Q ss_pred CCCCcccHHHHHHHHHHHHHHHH-hcCCCCCceEEEeCCCCCCchH
Q 018892 38 CSSGPNTLLVASELIKVVNKICD-KLGSQLPEFQVFLNDLPGNDFN 82 (349)
Q Consensus 38 cs~G~Ns~~~~~~ii~~i~~~~~-~~~~~~p~~~v~~nDlP~NDFn 82 (349)
|..|. |-..-..+++.|.+... ..|.++-.+.|.+++.|..||.
T Consensus 8 ~~~gr-s~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~w~ 52 (62)
T PRK00745 8 LFEGR-TVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKRENWA 52 (62)
T ss_pred EcCCC-CHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcChHHee
Confidence 44565 66666666666666533 2565566799999998876654
No 213
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=21.81 E-value=1.7e+02 Score=26.51 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=25.1
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCC
Q 018892 28 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 77 (349)
Q Consensus 28 ~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP 77 (349)
.++++|-.-|||+|-=.-.+.--+-+..... .+-.++|+-+|+-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~------~~~~~~I~atDi~ 73 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGA------LGWDFRILATDIS 73 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-------TT-SEEEEEEES-
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhccc------CCCceEEEEEECC
Confidence 4789999999999965544433333322211 2226999999963
No 214
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=21.59 E-value=8.1e+02 Score=24.40 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCCCCCc
Q 018892 28 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGND 80 (349)
Q Consensus 28 ~~~~~iaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~~~v~~nDlP~ND 80 (349)
.+.+.|+|||.+.|- -+-.+|+++.++ ...+|.+.|.--+.|...
T Consensus 109 ~~~vHIID~~i~~G~----QW~~LiqaLa~R----~~gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGV----QWPSLIQALASR----PGGPPSLRITGIGPPNSG 153 (374)
T ss_pred CcceEEEeccCCcch----HHHHHHHHHhcC----CCCCCeEEEEeccCCCCC
Confidence 368999999999983 677888888765 235778999999998765
No 215
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=21.22 E-value=95 Score=22.23 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCcchhhhc-cCCcCcccCCHHHHHHHHh
Q 018892 215 ELLATALNNMVSEGLIEEEKVN-CFNIPQYTPSPAEIKSEVI 255 (349)
Q Consensus 215 ~~l~~al~~mv~eG~i~~e~~d-~fn~P~y~~s~~E~~~~ie 255 (349)
+.....|.+...+|.|+.+|++ ....-+-..+..|+..++.
T Consensus 9 ~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 9 ERAVDLLRAAFAEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 3456777778899999999998 4555556677778777664
No 216
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.16 E-value=92 Score=29.20 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=20.7
Q ss_pred ceeEEcCCCCHHHHHHHHHHHHHHHHHHHHHhhHhhccCceEEEEec
Q 018892 152 GNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL 198 (349)
Q Consensus 152 ~~i~~~~ss~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~ 198 (349)
+.||+..+ .+++.++|.+ -|++||+|++-..
T Consensus 164 DaIhvGAa-a~~~pq~l~d---------------qL~~gGrllip~~ 194 (237)
T KOG1661|consen 164 DAIHVGAA-ASELPQELLD---------------QLKPGGRLLIPVG 194 (237)
T ss_pred ceEEEccC-ccccHHHHHH---------------hhccCCeEEEeec
Confidence 46777643 3445666664 4789999987664
No 217
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=20.95 E-value=62 Score=22.14 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=13.7
Q ss_pred cCcccCCHHHHHHHHh
Q 018892 240 IPQYTPSPAEIKSEVI 255 (349)
Q Consensus 240 ~P~y~~s~~E~~~~ie 255 (349)
+|++.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6899999999988764
No 218
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=20.79 E-value=4.9e+02 Score=21.59 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=16.6
Q ss_pred HHHHHHhhcccCCCCceEEEeecC
Q 018892 15 TEEAMTKLFCSTSPTKVAIADLGC 38 (349)
Q Consensus 15 l~~ai~~~~~~~~~~~~~iaD~Gc 38 (349)
+.+.+..++.+..+.+..+.||||
T Consensus 30 I~~~L~~LLnTr~g~~~~~~~yGl 53 (133)
T TIGR03357 30 IRRHLERLLNTRRGSCASLPDYGL 53 (133)
T ss_pred HHHHHHHHHccCCCccccccccCC
Confidence 333344556555678889999999
No 219
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=20.72 E-value=1.3e+02 Score=27.73 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhHhhccCceEEEEecccCCCCCCChhhhHHH----HHHHHHHHHHHhcCCcchhhhc
Q 018892 170 EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIW----ELLATALNNMVSEGLIEEEKVN 236 (349)
Q Consensus 170 ~Q~~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~~~~~----~~l~~al~~mv~eG~i~~e~~d 236 (349)
.|...++..-+. ..+++||-+| |+..+-+..| ..+.+||.+|+.||+|....--
T Consensus 8 ~qi~~~L~~~I~--~g~~~~G~~L-----------PsE~eL~~~~~VSR~TvR~Al~~L~~eGli~r~~G~ 65 (240)
T PRK09764 8 RQIADRIREQIA--RGELKPGDAL-----------PTESALQTEFGVSRVTVRQALRQLVEQQILESIQGS 65 (240)
T ss_pred HHHHHHHHHHHH--cCCCCCCCcC-----------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCc
Confidence 455555555443 5678887766 3322222222 3689999999999999976644
Done!