Query 018894
Match_columns 349
No_of_seqs 142 out of 1470
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:42:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 3.4E-08 1.2E-12 77.1 6.6 62 235-296 42-104 (137)
2 3b5d_A Multidrug transporter E 98.4 9.6E-07 3.3E-11 66.4 8.4 68 78-145 36-104 (110)
3 2i68_A Protein EMRE; transmemb 98.3 6.8E-07 2.3E-11 69.7 5.8 68 77-144 35-103 (137)
4 3b5d_A Multidrug transporter E 98.2 8.5E-06 2.9E-10 61.1 8.8 62 235-296 42-104 (110)
5 3rko_J NADH-quinone oxidoreduc 61.1 62 0.0021 25.9 10.5 24 264-287 127-150 (184)
6 3l1l_A Arginine/agmatine antip 58.3 30 0.001 31.5 8.0 23 278-300 409-431 (445)
7 3b9w_A Ammonium transporter fa 39.5 2.2E+02 0.0075 25.8 15.3 43 244-287 288-330 (407)
8 4djk_A Probable glutamate/gamm 15.6 6.3E+02 0.021 22.9 9.7 7 88-94 144-150 (511)
9 3arc_I Photosystem II reaction 14.9 71 0.0024 18.0 1.3 14 332-345 25-38 (38)
10 2jo1_A Phospholemman; FXYD1, N 14.2 1.6E+02 0.0055 19.3 3.0 38 280-318 22-59 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.67 E-value=3.4e-08 Score=77.11 Aligned_cols=62 Identities=6% Similarity=0.164 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcccCcchhhhh-hhhhHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018894 235 SVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (349)
Q Consensus 235 ~~~~~~~~~~~~~~a~~~s~~-~~~~~v~~~~~~~~~~~e~~t~~~~~G~~lii~g~~l~~~~ 296 (349)
+.++.+..++++.++..+..+ ..+.|+++.++++++|+|++++.+++|++++++|+++.+..
T Consensus 42 ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 346677788999999988777 89999999999999999999999999999999999998754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.42 E-value=9.6e-07 Score=66.41 Aligned_cols=68 Identities=19% Similarity=0.161 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhcceeccccchhHHHHH-hhhHHHHHHHHHHHHhccccchhhhHHHHHhhhhheeeeec
Q 018894 78 FGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT 145 (349)
Q Consensus 78 ~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~pi~~~~l~~~~~~e~~s~~~~~~i~l~~~Gv~l~~~~ 145 (349)
..+++++..++...++++.|.+.+..+ .++.|+++++++++++||+++..+++|+.+++.|+++....
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345677788888999999999999888 89999999999999999999999999999999999987653
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.33 E-value=6.8e-07 Score=69.68 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhcceeccccchhHHHHH-hhhHHHHHHHHHHHHhccccchhhhHHHHHhhhhheeeee
Q 018894 77 GFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 144 (349)
Q Consensus 77 ~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~pi~~~~l~~~~~~e~~s~~~~~~i~l~~~Gv~l~~~ 144 (349)
...+++++..++.+.+++++|++.+..+ .++.|++++++++++++|+++..+++|++++++|+++...
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3345677888999999999999998888 8999999999999999999999999999999999998764
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.18 E-value=8.5e-06 Score=61.15 Aligned_cols=62 Identities=6% Similarity=0.164 Sum_probs=54.3
Q ss_pred HHHHHHHHhhcccCcchhhhh-hhhhHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018894 235 SVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (349)
Q Consensus 235 ~~~~~~~~~~~~~~a~~~s~~-~~~~~v~~~~~~~~~~~e~~t~~~~~G~~lii~g~~l~~~~ 296 (349)
..++....++|+.+...+..+ ..+.|+.+.+.++++++|++|+.+++|+++++.|+++.+..
T Consensus 42 ~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345566678899888888666 89999999999999999999999999999999999998754
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=61.15 E-value=62 Score=25.87 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=18.3
Q ss_pred HHHHHHhcCCCCchhhhhhHHHHH
Q 018894 264 LAFGYVLLHDPFSWRNILGILIAV 287 (349)
Q Consensus 264 ~~~~~~~~~e~~t~~~~~G~~lii 287 (349)
--+|..++++-.=+-++.+..+.+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888888888876654
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=58.30 E-value=30 Score=31.49 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=16.9
Q ss_pred hhhhhHHHHHHHHHHHhhhcccc
Q 018894 278 RNILGILIAVIGMVLYSYCCSLE 300 (349)
Q Consensus 278 ~~~~G~~lii~g~~l~~~~~~~~ 300 (349)
..+.|.+++++|..+|...++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 44568888899999988765543
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=39.51 E-value=2.2e+02 Score=25.83 Aligned_cols=43 Identities=14% Similarity=0.018 Sum_probs=25.6
Q ss_pred hcccCcchhhhhhhhhHHHHHHHHHHhcCCCCchhhhhhHHHHH
Q 018894 244 IGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAV 287 (349)
Q Consensus 244 ~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~t~~~~~G~~lii 287 (349)
.+.-++..+--+-.+--+++.+...++ ....+..|++|++.++
T Consensus 288 l~iDD~l~a~~vHgv~Gi~G~l~~glf-a~~~~~~Ql~g~~~~~ 330 (407)
T 3b9w_A 288 AKTIDTCGVHNLHGLPGLLGGFSAILI-VPGIAVAQLTGIGITL 330 (407)
T ss_dssp SCCCCTTCHHHHTTHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred CCCCCCCCCeecchHHHHHHHHHHHHH-ccCCcHHHHHHHHHHH
Confidence 355666665555555556666665443 3334557999877753
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=15.58 E-value=6.3e+02 Score=22.86 Aligned_cols=7 Identities=0% Similarity=-0.586 Sum_probs=2.7
Q ss_pred hcceecc
Q 018894 88 LLNLSLG 94 (349)
Q Consensus 88 ~~~~al~ 94 (349)
....+.+
T Consensus 144 in~~g~~ 150 (511)
T 4djk_A 144 TQFGGTK 150 (511)
T ss_dssp HHHTCSS
T ss_pred HHHhChH
Confidence 3333433
No 9
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=14.92 E-value=71 Score=18.02 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCcccccccCCCC
Q 018894 332 GDGVAKAPAWNSNK 345 (349)
Q Consensus 332 ~~~~~~~~~~~~~~ 345 (349)
+|+++++|.+++-|
T Consensus 25 snDP~RNP~rkd~e 38 (38)
T 3arc_I 25 SGDPARNPKRKDLE 38 (38)
T ss_dssp TTGGGCSSSCCCCC
T ss_pred CCCCCCCCCcccCC
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=14.22 E-value=1.6e+02 Score=19.25 Aligned_cols=38 Identities=5% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhhcccccccccccccCCCCcCCCC
Q 018894 280 ILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVVKE 318 (349)
Q Consensus 280 ~~G~~lii~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
+.+.++.++|+++..-.|-+-..++++..-++.... .+
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~-g~ 59 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE-GT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTT-ST
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCcccc-cc
Done!