Query 018894
Match_columns 349
No_of_seqs 142 out of 1470
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 07:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018894.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018894hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 17.7 54 0.0039 15.3 2.7 18 152-169 3-20 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 14.0 3.1E+02 0.023 22.3 17.3 87 103-193 233-320 (383)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.6 3.9E+02 0.028 20.2 5.6 60 74-137 4-63 (248)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 6.0 1.1E+02 0.0078 19.4 1.5 20 282-301 27-46 (91)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 5.9 2.1E+02 0.016 18.1 3.1 19 281-299 37-55 (100)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.6 3.1E+02 0.022 17.6 3.3 19 281-299 43-61 (107)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 4.5 2.3E+02 0.017 13.3 3.0 9 267-275 19-27 (30)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 4.2 6.2E+02 0.045 17.8 6.5 42 252-293 68-109 (199)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 3.3 3.5E+02 0.026 13.5 2.9 18 151-168 18-35 (37)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 2.7 1E+03 0.075 17.9 16.6 167 155-332 63-239 (447)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.73 E-value=54 Score=15.31 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 018894 152 LGSVLSLLAVLTTCVAQI 169 (349)
Q Consensus 152 ~G~~~~l~s~~~~a~~~v 169 (349)
+|.+..-++.++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577788888888887653
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=13.96 E-value=3.1e+02 Score=22.34 Aligned_cols=87 Identities=11% Similarity=-0.067 Sum_probs=35.7
Q ss_pred HHhhhHHHHHHHHHHHHhccccchhhhHHHHHhhhhheeeeecccccchh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018894 103 MTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVL-GSVLSLLAVLTTCVAQIMTNTIQKKFKVS 181 (349)
Q Consensus 103 ~l~~~~pi~~~~l~~~~~~e~~s~~~~~~i~l~~~Gv~l~~~~~~~~~~~-G~~~~l~s~~~~a~~~v~~k~~~~~~~~~ 181 (349)
.+....-.++..+...+.++|.+......- .+.|.+-+.....-.++. ..+.++++++..-...-+.|+..| =.|
T Consensus 233 ~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~--iDD 308 (383)
T d1u7ga_ 233 VVATAAAILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLR--VDD 308 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCC
T ss_pred HhHHHHHHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcc--ccc
Confidence 333344444444444456667766553321 222333333222223333 355555544433322222332222 125
Q ss_pred HHHHHHHhhHHH
Q 018894 182 STQLLYQSCPYQ 193 (349)
Q Consensus 182 ~~~~~~~~~~~~ 193 (349)
|..........+
T Consensus 309 ~~~~~~vHg~~G 320 (383)
T d1u7ga_ 309 PCDVFGVHGVCG 320 (383)
T ss_dssp GGGHHHHHHHHH
T ss_pred ccceEeehhhhH
Confidence 555544444333
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.61 E-value=3.9e+02 Score=20.20 Aligned_cols=60 Identities=12% Similarity=-0.081 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhhcceeccccchhHHHHHhhhHHHHHHHHHHHHhccccchhhhHHHHHhhh
Q 018894 74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLV 137 (349)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~pi~~~~l~~~~~~e~~s~~~~~~i~l~~~ 137 (349)
++..++++..+..++....+..-+...+ ...-+.+.+..++++.+|.-.++++-=.+++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l 63 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFA----ITTLILSSAGLYIFANRKAYAWRYVYPGMAGM 63 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHH----HHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHH----HHHHHHHHheEEEEEccCccceehhhhHHHHH
Confidence 4556666666655555444444333332 23455666677788888877777654443333
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.96 E-value=1.1e+02 Score=19.40 Aligned_cols=20 Identities=20% Similarity=-0.066 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhhhccccc
Q 018894 282 GILIAVIGMVLYSYCCSLES 301 (349)
Q Consensus 282 G~~lii~g~~l~~~~~~~~~ 301 (349)
.+.+.+.|.++|...|.+++
T Consensus 27 iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHhhheeeecc
Confidence 34556777778877776543
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.89 E-value=2.1e+02 Score=18.11 Aligned_cols=19 Identities=26% Similarity=0.210 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHhhhccc
Q 018894 281 LGILIAVIGMVLYSYCCSL 299 (349)
Q Consensus 281 ~G~~lii~g~~l~~~~~~~ 299 (349)
.++.+++.|...|...|.+
T Consensus 37 ~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3455566777777666554
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.63 E-value=3.1e+02 Score=17.56 Aligned_cols=19 Identities=16% Similarity=0.001 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHhhhccc
Q 018894 281 LGILIAVIGMVLYSYCCSL 299 (349)
Q Consensus 281 ~G~~lii~g~~l~~~~~~~ 299 (349)
.++.+.+.|...|...+.+
T Consensus 43 ~~I~~~V~~~~~~~~~~~r 61 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIVRFN 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3445556677777666554
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.49 E-value=2.3e+02 Score=13.27 Aligned_cols=9 Identities=11% Similarity=0.253 Sum_probs=4.3
Q ss_pred HHHhcCCCC
Q 018894 267 GYVLLHDPF 275 (349)
Q Consensus 267 ~~~~~~e~~ 275 (349)
-.++|+|++
T Consensus 19 faiffrepp 27 (30)
T d2axtt1 19 FAIFFREPP 27 (30)
T ss_dssp HHHHTSCCC
T ss_pred HHHHhcCCC
Confidence 334455554
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.17 E-value=6.2e+02 Score=17.83 Aligned_cols=42 Identities=10% Similarity=-0.055 Sum_probs=25.4
Q ss_pred hhhhhhhhHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHH
Q 018894 252 YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 293 (349)
Q Consensus 252 ~s~~~~~~~v~~~~~~~~~~~e~~t~~~~~G~~lii~g~~l~ 293 (349)
...+...-.+........+++.+++.....+..+.+....-+
T Consensus 68 i~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 68 IPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 333334444455555566778899988887766665554433
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.32 E-value=3.5e+02 Score=13.54 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 018894 151 VLGSVLSLLAVLTTCVAQ 168 (349)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~ 168 (349)
.+|.++.++-++.++.|.
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 368777777777777664
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.74 E-value=1e+03 Score=17.90 Aligned_cols=167 Identities=5% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhHHHHHHHHHHHHhhhcccccccccccccCchhHHHHHHHHHHHH
Q 018894 155 VLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISV 234 (349)
Q Consensus 155 ~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
...-+..+.+++.....-++.+ +..+-...........+..+....... .............+.+...+.
T Consensus 63 ~~~s~~~~~~~~~~~~~G~l~D--r~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~ 132 (447)
T d1pw4a_ 63 FALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVMLFMGFVPW--------ATSSIAVMFVLLFLCGWFQGM 132 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHCHH--------HHSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHHHHhhccccch--------hhhhHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHhhcccCcchhhhhhhhhHH----------HHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccccc
Q 018894 235 SVNFSTFLVIGKTSPVTYQVLGHLKTC----------LVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQK 304 (349)
Q Consensus 235 ~~~~~~~~~~~~~~a~~~s~~~~~~~v----------~~~~~~~~~~~e~~t~~~~~G~~lii~g~~l~~~~~~~~~~~~ 304 (349)
..........+..++-.-+....+... .......-.++.--....+.+...++.++..+...+..++.+.
T Consensus 133 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (447)
T d1pw4a_ 133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG 212 (447)
T ss_dssp THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTC
T ss_pred hhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcc
Q ss_pred cccccCCCCcCCCCCCCccccccccCCC
Q 018894 305 ASETSSQLPQVVKEGETDPLINAEKGTG 332 (349)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (349)
....++...+. .++..+...++...++
T Consensus 213 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 239 (447)
T d1pw4a_ 213 LPPIEEYKNDY-PDDYNEKAEQELTAKQ 239 (447)
T ss_dssp CCSCTTTCCC--------------CCTH
T ss_pred cchhhhhhhhc-ccchhhccccccchhh
Done!