BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018896
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|B Chain B, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|C Chain C, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|D Chain D, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
Length = 165
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
RH IS+ +E+G ++R+AG+F+ RGYNIESL+V D L T+V +G + ++ Q+
Sbjct: 4 RHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQIT 63
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
+QLNKL+ V+K+ D+S+E +VEREL L+K+ E L DIFR ++D++ T
Sbjct: 64 KQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNELYT 123
Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
IE+TG K+ + + I E+ARTG L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
G H +S+L N G L+ V G+ S RGYNI+ +S
Sbjct: 1 GHXRHIISLLXENEAGALSRVAGLFSARGYNIESLS 36
>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
pdb|2F1F|B Chain B, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
Length = 164
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 7/158 (4%)
Query: 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
R +SV + +ESG ++R+ G+F++RGYNIESL V D L TI G E+VL Q+
Sbjct: 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 62
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
+QL+KLV+V++V ++ HVERE+ML+K+ E+ +IFR +++D++ T
Sbjct: 63 KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 122
Query: 197 IEVTGDPGKM---VAVQRNLSKFGIKELARTGKIALRR 231
+++ G GK+ +A R+++K I E+AR+G + L R
Sbjct: 123 VQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 158
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
LS+L+ N G L+ V G+ S+RGYNI+ ++
Sbjct: 6 LSVLLENESGALSRVIGLFSQRGYNIESLT 35
>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit
From Thermotoga Maritima
Length = 193
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Query: 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLR 133
+++ H +S V ++ G+ ++A +FARRG+NI S+ VG + L I V G ++ +
Sbjct: 26 QIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIE 85
Query: 134 QVVEQLNKLVNVIKVEDISNEPH--VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS 191
Q+ +Q KLV V+KV I P VERE LIK+ D EI LV+IFR K++D+S
Sbjct: 86 QIEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFDEDKQ-EIFQLVEIFRGKIIDVS 144
Query: 192 EHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
IE+TG K+ A L + ++E+ARTG +A R
Sbjct: 145 REGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
+R H +S LV+N PGV V + +RRG+NI I+
Sbjct: 27 IREHLVSXLVHNKPGVXRKVANLFARRGFNISSIT 61
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 253 EKKRTGIFIPETNQ--SLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPS 310
EKK +F+PE LN N +D + D +E Y + + + G L+ +DPS
Sbjct: 44 EKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPS 103
Query: 311 GLRSHTLSMLVNNTPGV 327
+ L+ ++ GV
Sbjct: 104 DAAHPWNTHLIIDSDGV 120
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 68 SVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESL-AVGLNVDKALFTIVVS 126
+P K KRH GD I+N++A + RGY +++ + + + S
Sbjct: 366 ELPKYYQIKTKRHV----EGDRHAIVNKVAEMARERGYTVDTTDGAKIIFEDGWVLVRAS 421
Query: 127 GTERVLRQVVEQLNK 141
GTE ++R E +K
Sbjct: 422 GTEPIIRIFSEAKSK 436
>pdb|2F06|A Chain A, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
pdb|2F06|B Chain B, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
Length = 144
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQV 135
+S+F+ ++SG + + V A+ N+ +L + N D + +VS ++ + +
Sbjct: 9 LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKAL 62
>pdb|4H40|A Chain A, Crystal Structure Of A Putative Cell Adhesion Protein
(Bf2867) From Bacteroides Fragilis Nctc 9343 At 2.57 A
Resolution
pdb|4H40|B Chain B, Crystal Structure Of A Putative Cell Adhesion Protein
(Bf2867) From Bacteroides Fragilis Nctc 9343 At 2.57 A
Resolution
Length = 327
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 15/75 (20%)
Query: 258 GIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFS----------ANQVLDAHWGILYDE 307
GI I Q L+ + D + GDV PV+ D + A+ L AH G+L
Sbjct: 203 GIEISGIQQPLDNTTSFDWVN-GDVLPVKVGDQSASVRITQATRNADNSLVAHTGVL--- 258
Query: 308 DPSGLRSHTLSMLVN 322
P+ RSH++S+L+N
Sbjct: 259 -PTDARSHSISVLLN 272
>pdb|3TE2|A Chain A, Crystal Structure Of Hsc K16s
pdb|3TE2|B Chain B, Crystal Structure Of Hsc K16s
pdb|3TE2|C Chain C, Crystal Structure Of Hsc K16s
pdb|3TE2|D Chain D, Crystal Structure Of Hsc K16s
pdb|3TE2|E Chain E, Crystal Structure Of Hsc K16s
Length = 268
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 67 QSVPPITASKVKRHTISVFVGDESGI----INRIAGVFARRGYNIESLAVGLNVDKALFT 122
S+ + SKVK S F G GI I I G+ G + + +GL+ AL
Sbjct: 18 NSINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMTKIVMGLSFAIALSL 77
Query: 123 IVVSGTE 129
++++GTE
Sbjct: 78 VIMTGTE 84
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 202 DPGKMVAVQRNLSKFGIKELARTGKIALRREK 233
D G +V Q+ + F + LA+ G IALRR K
Sbjct: 278 DKGFVVINQKGIDPFSLDALAKEGIIALRRAK 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,615,308
Number of Sequences: 62578
Number of extensions: 375300
Number of successful extensions: 1092
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 24
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)