Query 018896
Match_columns 349
No_of_seqs 250 out of 1324
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11895 ilvH acetolactate syn 100.0 7E-53 1.5E-57 373.6 21.2 157 78-234 1-159 (161)
2 TIGR00119 acolac_sm acetolacta 100.0 2.2E-52 4.7E-57 369.0 20.2 155 79-233 1-157 (157)
3 CHL00100 ilvH acetohydroxyacid 100.0 1.4E-52 3.1E-57 375.7 17.8 166 78-243 1-168 (174)
4 COG0440 IlvH Acetolactate synt 100.0 1.6E-51 3.5E-56 366.1 16.9 159 77-235 2-162 (163)
5 KOG2663 Acetolactate synthase, 100.0 2.4E-49 5.2E-54 373.1 3.2 215 74-325 72-288 (309)
6 PRK08178 acetolactate synthase 100.0 5.9E-29 1.3E-33 205.5 10.2 86 76-162 5-92 (96)
7 PRK13562 acetolactate synthase 100.0 1.4E-28 3.1E-33 199.0 9.8 78 78-155 1-83 (84)
8 PRK06737 acetolactate synthase 99.9 1.9E-27 4.2E-32 188.8 10.1 74 78-151 1-76 (76)
9 PF10369 ALS_ss_C: Small subun 99.9 8.6E-27 1.9E-31 183.2 7.6 75 158-232 1-75 (75)
10 PRK11152 ilvM acetolactate syn 99.9 6.3E-26 1.4E-30 180.0 9.7 73 77-150 1-75 (76)
11 PF13710 ACT_5: ACT domain; PD 99.8 1E-20 2.2E-25 144.0 7.4 61 88-148 1-63 (63)
12 PRK08178 acetolactate synthase 99.6 8.5E-16 1.8E-20 127.5 4.2 40 309-348 3-42 (96)
13 PRK13562 acetolactate synthase 99.6 8.9E-16 1.9E-20 124.7 3.7 36 313-348 1-36 (84)
14 PRK06737 acetolactate synthase 99.5 5.8E-15 1.3E-19 117.6 3.7 36 313-348 1-36 (76)
15 PRK11152 ilvM acetolactate syn 99.5 2.1E-14 4.5E-19 114.3 3.8 36 313-348 2-37 (76)
16 KOG2663 Acetolactate synthase, 99.3 1.1E-12 2.4E-17 125.3 2.9 40 310-349 73-112 (309)
17 COG3978 Acetolactate synthase 99.0 8E-10 1.7E-14 89.8 7.0 76 77-153 1-78 (86)
18 PF01842 ACT: ACT domain; Int 98.8 1.3E-08 2.8E-13 73.8 7.6 64 80-143 1-65 (66)
19 PF13710 ACT_5: ACT domain; PD 98.8 1.4E-09 2.9E-14 83.0 1.9 26 323-348 1-26 (63)
20 COG4747 ACT domain-containing 98.8 1.5E-08 3.2E-13 88.4 8.2 122 77-220 1-133 (142)
21 cd04878 ACT_AHAS N-terminal AC 98.7 9.2E-08 2E-12 69.3 9.3 69 80-148 1-71 (72)
22 cd04908 ACT_Bt0572_1 N-termina 98.7 8.6E-08 1.9E-12 71.9 8.0 47 80-126 2-48 (66)
23 cd04879 ACT_3PGDH-like ACT_3PG 98.6 2.1E-07 4.5E-12 67.1 7.2 68 82-151 2-71 (71)
24 PF13291 ACT_4: ACT domain; PD 98.6 6.3E-07 1.4E-11 69.1 10.0 73 77-149 4-79 (80)
25 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.5 6.3E-07 1.4E-11 66.0 7.8 70 80-149 1-73 (79)
26 cd04903 ACT_LSD C-terminal ACT 98.5 6.5E-07 1.4E-11 64.8 7.3 69 81-151 1-71 (71)
27 PRK06349 homoserine dehydrogen 98.5 5.2E-07 1.1E-11 90.5 8.8 75 74-148 343-419 (426)
28 cd04901 ACT_3PGDH C-terminal A 98.4 3.6E-07 7.8E-12 67.5 4.9 68 82-151 2-69 (69)
29 cd04888 ACT_PheB-BS C-terminal 98.4 3.3E-06 7.2E-11 63.4 8.9 71 81-151 2-75 (76)
30 cd04874 ACT_Af1403 N-terminal 98.4 4E-06 8.7E-11 61.0 8.9 69 81-150 2-71 (72)
31 PRK08577 hypothetical protein; 98.3 5.3E-06 1.2E-10 71.1 10.5 76 76-151 53-132 (136)
32 cd04889 ACT_PDH-BS-like C-term 98.3 2.5E-06 5.4E-11 61.6 6.5 49 82-130 1-50 (56)
33 PRK00194 hypothetical protein; 98.3 1.4E-06 3.1E-11 68.7 5.3 73 77-149 1-75 (90)
34 cd04877 ACT_TyrR N-terminal AC 98.2 9.9E-06 2.1E-10 62.1 8.9 70 81-152 2-71 (74)
35 cd04902 ACT_3PGDH-xct C-termin 98.2 4.8E-06 1E-10 61.8 6.5 69 82-152 2-72 (73)
36 cd04876 ACT_RelA-SpoT ACT dom 98.1 2.3E-05 4.9E-10 54.3 8.7 68 82-149 1-70 (71)
37 cd04887 ACT_MalLac-Enz ACT_Mal 98.1 4.4E-05 9.6E-10 57.3 9.7 68 81-148 1-70 (74)
38 cd04909 ACT_PDH-BS C-terminal 98.0 2.6E-05 5.6E-10 58.1 7.7 61 80-141 2-64 (69)
39 cd04905 ACT_CM-PDT C-terminal 98.0 5.9E-05 1.3E-09 58.5 9.1 65 80-144 2-71 (80)
40 PRK04435 hypothetical protein; 98.0 5.1E-05 1.1E-09 66.6 9.8 77 76-152 66-145 (147)
41 cd04884 ACT_CBS C-terminal ACT 97.9 6.4E-05 1.4E-09 57.0 7.9 63 82-145 2-69 (72)
42 cd04883 ACT_AcuB C-terminal AC 97.9 5.4E-05 1.2E-09 56.4 7.1 59 81-141 3-63 (72)
43 cd04880 ACT_AAAH-PDT-like ACT 97.9 9.4E-05 2E-09 56.5 8.5 63 82-144 2-69 (75)
44 cd04869 ACT_GcvR_2 ACT domains 97.9 4.9E-05 1.1E-09 58.2 6.9 61 82-142 2-69 (81)
45 cd04872 ACT_1ZPV ACT domain pr 97.9 2.1E-05 4.5E-10 62.2 4.7 71 79-149 1-73 (88)
46 cd04886 ACT_ThrD-II-like C-ter 97.8 9.3E-05 2E-09 53.6 7.3 61 82-142 1-67 (73)
47 cd04882 ACT_Bt0572_2 C-termina 97.8 8.5E-05 1.8E-09 53.9 6.1 46 82-127 2-49 (65)
48 PF13740 ACT_6: ACT domain; PD 97.7 0.00019 4.1E-09 55.8 8.3 64 79-142 2-65 (76)
49 cd04908 ACT_Bt0572_1 N-termina 97.7 2.6E-05 5.5E-10 58.5 2.9 32 316-347 3-34 (66)
50 cd04873 ACT_UUR-ACR-like ACT d 97.7 0.00028 6E-09 51.6 8.2 49 81-129 2-50 (70)
51 cd02116 ACT ACT domains are co 97.7 0.00028 6.2E-09 46.1 7.2 57 82-139 1-59 (60)
52 cd04870 ACT_PSP_1 CT domains f 97.7 0.00012 2.6E-09 56.3 6.1 62 82-143 2-64 (75)
53 PF01842 ACT: ACT domain; Int 97.7 4.3E-05 9.2E-10 55.3 3.3 33 315-347 1-33 (66)
54 cd04875 ACT_F4HF-DF N-terminal 97.6 0.00016 3.5E-09 55.2 6.3 62 81-142 1-66 (74)
55 COG4492 PheB ACT domain-contai 97.6 0.00035 7.7E-09 62.2 9.2 77 76-152 69-148 (150)
56 cd04899 ACT_ACR-UUR-like_2 C-t 97.5 0.00067 1.4E-08 50.3 8.4 61 81-141 2-68 (70)
57 cd04926 ACT_ACR_4 C-terminal 97.5 0.00065 1.4E-08 52.2 8.3 46 81-126 3-48 (72)
58 PRK11589 gcvR glycine cleavage 97.5 0.0011 2.3E-08 61.0 10.6 116 76-193 5-129 (190)
59 cd04925 ACT_ACR_2 ACT domain-c 97.4 0.00073 1.6E-08 52.3 7.7 62 81-142 2-71 (74)
60 cd04900 ACT_UUR-like_1 ACT dom 97.4 0.0016 3.4E-08 50.0 8.6 61 81-141 3-71 (73)
61 cd04904 ACT_AAAH ACT domain of 97.3 0.0016 3.5E-08 50.5 8.6 64 81-144 2-68 (74)
62 cd04893 ACT_GcvR_1 ACT domains 97.3 0.00086 1.9E-08 52.3 6.7 62 80-141 2-63 (77)
63 COG1707 ACT domain-containing 97.2 0.0015 3.3E-08 60.6 7.8 81 79-160 2-84 (218)
64 cd04927 ACT_ACR-like_2 Second 97.2 0.0031 6.8E-08 49.3 8.5 61 81-141 2-69 (76)
65 PRK13011 formyltetrahydrofolat 97.1 0.0016 3.5E-08 63.1 7.9 69 75-143 3-74 (286)
66 cd04889 ACT_PDH-BS-like C-term 97.1 0.00037 8E-09 50.3 2.2 32 317-348 1-32 (56)
67 PRK11790 D-3-phosphoglycerate 97.0 0.001 2.2E-08 67.0 6.0 72 78-151 337-408 (409)
68 cd04930 ACT_TH ACT domain of t 97.0 0.0049 1.1E-07 52.6 8.9 71 78-148 40-113 (115)
69 cd04931 ACT_PAH ACT domain of 97.0 0.0043 9.3E-08 50.9 7.9 65 77-141 12-80 (90)
70 PRK06027 purU formyltetrahydro 96.9 0.0021 4.6E-08 62.1 6.9 68 76-143 3-74 (286)
71 cd04895 ACT_ACR_1 ACT domain-c 96.8 0.0082 1.8E-07 47.7 8.2 61 80-140 2-69 (72)
72 PRK11589 gcvR glycine cleavage 96.8 0.0021 4.5E-08 59.2 5.4 68 79-146 95-169 (190)
73 cd04878 ACT_AHAS N-terminal AC 96.8 0.0012 2.7E-08 47.5 3.1 33 315-347 1-33 (72)
74 cd04928 ACT_TyrKc Uncharacteri 96.8 0.0089 1.9E-07 47.1 8.0 47 80-126 2-49 (68)
75 PRK11092 bifunctional (p)ppGpp 96.7 0.0086 1.9E-07 64.7 10.0 72 79-151 626-700 (702)
76 PRK13581 D-3-phosphoglycerate 96.6 0.0038 8.3E-08 64.7 6.4 74 78-151 451-524 (526)
77 TIGR00691 spoT_relA (p)ppGpp s 96.6 0.0099 2.1E-07 63.9 9.4 71 79-149 610-682 (683)
78 cd04929 ACT_TPH ACT domain of 96.5 0.017 3.8E-07 45.5 8.0 60 82-141 3-65 (74)
79 PRK10872 relA (p)ppGpp synthet 96.4 0.015 3.2E-07 63.5 9.7 72 80-151 667-741 (743)
80 PRK06635 aspartate kinase; Rev 96.4 0.034 7.3E-07 55.1 11.0 121 86-215 270-399 (404)
81 cd04896 ACT_ACR-like_3 ACT dom 96.3 0.017 3.7E-07 46.3 7.0 61 81-141 2-70 (75)
82 TIGR00719 sda_beta L-serine de 96.2 0.012 2.5E-07 54.4 6.4 57 78-134 147-207 (208)
83 cd04883 ACT_AcuB C-terminal AC 96.2 0.0044 9.5E-08 46.1 2.8 32 316-347 3-34 (72)
84 PRK06349 homoserine dehydrogen 96.1 0.0041 9E-08 62.8 3.4 37 311-347 345-381 (426)
85 PRK07334 threonine dehydratase 96.1 0.028 6.1E-07 56.2 9.0 64 79-142 326-395 (403)
86 PRK11899 prephenate dehydratas 96.1 0.026 5.7E-07 54.7 8.5 66 79-144 194-264 (279)
87 cd04897 ACT_ACR_3 ACT domain-c 96.1 0.026 5.7E-07 45.2 7.0 63 80-142 2-71 (75)
88 cd04882 ACT_Bt0572_2 C-termina 96.1 0.0041 8.9E-08 45.0 2.2 31 316-346 1-31 (65)
89 COG2716 GcvR Glycine cleavage 96.0 0.0083 1.8E-07 55.3 4.4 72 78-149 91-169 (176)
90 PRK13010 purU formyltetrahydro 96.0 0.11 2.5E-06 50.6 12.5 40 74-113 4-43 (289)
91 TIGR01327 PGDH D-3-phosphoglyc 96.0 0.01 2.2E-07 61.6 5.5 72 78-151 450-523 (525)
92 PRK06545 prephenate dehydrogen 96.0 0.023 5E-07 55.8 7.6 66 78-144 289-356 (359)
93 cd04909 ACT_PDH-BS C-terminal 95.9 0.0067 1.5E-07 45.1 2.9 33 315-347 2-34 (69)
94 TIGR00655 PurU formyltetrahydr 95.9 0.021 4.5E-07 55.4 6.8 61 81-141 2-66 (280)
95 COG0317 SpoT Guanosine polypho 95.9 0.041 8.9E-07 59.7 9.5 74 76-150 624-700 (701)
96 TIGR01127 ilvA_1Cterm threonin 95.8 0.046 9.9E-07 53.8 9.0 66 77-142 303-374 (380)
97 cd04879 ACT_3PGDH-like ACT_3PG 95.8 0.0075 1.6E-07 43.2 2.5 31 317-347 2-32 (71)
98 PRK00194 hypothetical protein; 95.7 0.0072 1.6E-07 47.6 2.4 33 314-346 3-35 (90)
99 cd04872 ACT_1ZPV ACT domain pr 95.7 0.0072 1.6E-07 47.7 2.3 33 314-346 1-33 (88)
100 cd04905 ACT_CM-PDT C-terminal 95.7 0.011 2.3E-07 45.9 3.1 32 315-346 2-33 (80)
101 COG0077 PheA Prephenate dehydr 95.7 0.054 1.2E-06 53.1 8.6 71 78-148 193-268 (279)
102 cd04885 ACT_ThrD-I Tandem C-te 95.6 0.063 1.4E-06 40.6 7.1 59 82-141 1-61 (68)
103 PRK06382 threonine dehydratase 95.6 0.05 1.1E-06 54.5 8.4 65 78-142 329-399 (406)
104 COG2061 ACT-domain-containing 95.6 0.44 9.6E-06 43.8 13.5 137 76-215 2-153 (170)
105 cd04926 ACT_ACR_4 C-terminal 95.4 0.012 2.6E-07 45.2 2.7 32 316-347 3-34 (72)
106 cd04903 ACT_LSD C-terminal ACT 95.4 0.011 2.4E-07 42.6 2.3 32 316-347 1-32 (71)
107 TIGR00656 asp_kin_monofn aspar 95.4 0.18 3.8E-06 50.0 11.2 129 79-215 260-396 (401)
108 cd04913 ACT_AKii-LysC-BS-like_ 95.4 0.048 1E-06 39.7 5.6 54 86-141 9-63 (75)
109 PRK12483 threonine dehydratase 95.3 0.44 9.6E-06 50.1 14.4 132 78-217 344-504 (521)
110 cd04869 ACT_GcvR_2 ACT domains 95.2 0.014 3.1E-07 44.5 2.5 32 316-347 1-32 (81)
111 cd04891 ACT_AK-LysC-DapG-like_ 95.2 0.09 1.9E-06 36.6 6.3 51 86-138 8-59 (61)
112 cd04884 ACT_CBS C-terminal ACT 95.2 0.016 3.5E-07 43.8 2.6 31 317-347 2-32 (72)
113 PRK11898 prephenate dehydratas 95.1 0.12 2.7E-06 49.9 9.0 66 79-144 196-267 (283)
114 PRK08198 threonine dehydratase 95.1 0.12 2.7E-06 51.3 9.3 66 77-142 325-396 (404)
115 cd04935 ACT_AKiii-DAPDC_1 ACT 95.1 0.11 2.5E-06 40.7 7.2 56 86-145 11-71 (75)
116 cd04902 ACT_3PGDH-xct C-termin 95.0 0.018 4E-07 42.5 2.4 31 317-347 2-32 (73)
117 PRK10622 pheA bifunctional cho 94.8 0.11 2.4E-06 52.5 8.1 66 79-144 297-367 (386)
118 cd04871 ACT_PSP_2 ACT domains 94.8 0.025 5.3E-07 45.3 2.8 62 81-143 1-73 (84)
119 cd02116 ACT ACT domains are co 94.7 0.023 5E-07 36.9 2.2 31 317-347 1-31 (60)
120 cd04873 ACT_UUR-ACR-like ACT d 94.7 0.029 6.3E-07 40.9 2.9 32 316-347 2-33 (70)
121 PRK08818 prephenate dehydrogen 94.6 0.1 2.2E-06 52.6 7.4 52 78-129 294-347 (370)
122 cd04900 ACT_UUR-like_1 ACT dom 94.5 0.04 8.7E-07 42.2 3.2 32 316-347 3-34 (73)
123 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.4 0.039 8.6E-07 40.3 2.9 33 315-347 1-33 (79)
124 cd04874 ACT_Af1403 N-terminal 94.4 0.039 8.5E-07 39.9 2.8 32 316-347 2-33 (72)
125 cd04932 ACT_AKiii-LysC-EC_1 AC 94.4 0.22 4.9E-06 39.1 7.2 56 86-145 11-71 (75)
126 cd04912 ACT_AKiii-LysC-EC-like 94.3 0.3 6.5E-06 37.7 7.8 52 86-141 11-67 (75)
127 cd04906 ACT_ThrD-I_1 First of 94.1 0.26 5.6E-06 39.1 7.3 74 80-157 2-78 (85)
128 PRK03059 PII uridylyl-transfer 94.1 0.16 3.5E-06 56.0 8.2 68 78-145 785-856 (856)
129 cd04880 ACT_AAAH-PDT-like ACT 94.1 0.035 7.6E-07 42.3 2.1 30 317-346 2-31 (75)
130 cd04875 ACT_F4HF-DF N-terminal 94.1 0.033 7.1E-07 42.5 2.0 31 316-346 1-31 (74)
131 cd04927 ACT_ACR-like_2 Second 94.1 0.049 1.1E-06 42.6 3.0 32 316-347 2-33 (76)
132 PRK08577 hypothetical protein; 94.0 0.061 1.3E-06 46.2 3.7 35 313-347 55-89 (136)
133 cd04925 ACT_ACR_2 ACT domain-c 94.0 0.052 1.1E-06 42.0 2.9 33 315-347 1-33 (74)
134 PRK08210 aspartate kinase I; R 93.9 0.82 1.8E-05 45.6 11.9 122 79-215 271-398 (403)
135 PRK05092 PII uridylyl-transfer 93.8 0.23 4.9E-06 55.1 8.7 68 77-144 841-915 (931)
136 COG4747 ACT domain-containing 93.8 0.24 5.2E-06 44.0 7.1 59 79-141 69-128 (142)
137 TIGR01268 Phe4hydrox_tetr phen 93.8 0.37 8E-06 50.0 9.6 65 79-143 16-84 (436)
138 cd04899 ACT_ACR-UUR-like_2 C-t 93.7 0.064 1.4E-06 39.6 2.9 32 316-347 2-33 (70)
139 PF13291 ACT_4: ACT domain; PD 93.5 0.094 2E-06 40.3 3.7 34 314-347 6-39 (80)
140 cd04890 ACT_AK-like_1 ACT doma 93.5 0.27 5.8E-06 35.9 5.9 49 87-139 11-61 (62)
141 cd04886 ACT_ThrD-II-like C-ter 93.3 0.06 1.3E-06 38.8 2.2 31 317-347 1-31 (73)
142 cd04887 ACT_MalLac-Enz ACT_Mal 93.3 0.071 1.5E-06 39.9 2.5 32 316-347 1-32 (74)
143 COG3830 ACT domain-containing 93.2 0.18 3.9E-06 42.2 5.0 46 77-124 1-46 (90)
144 cd04934 ACT_AK-Hom3_1 CT domai 93.2 0.38 8.1E-06 37.7 6.6 55 86-144 11-68 (73)
145 COG0527 LysC Aspartokinases [A 93.1 1.7 3.7E-05 45.1 13.0 128 77-215 308-442 (447)
146 cd04876 ACT_RelA-SpoT ACT dom 93.1 0.082 1.8E-06 36.3 2.4 31 317-347 1-31 (71)
147 TIGR01270 Trp_5_monoox tryptop 93.1 0.47 1E-05 49.6 8.9 73 77-149 29-105 (464)
148 cd04901 ACT_3PGDH C-terminal A 93.1 0.051 1.1E-06 39.9 1.5 30 318-347 3-32 (69)
149 PRK03381 PII uridylyl-transfer 93.0 0.26 5.6E-06 53.8 7.4 46 80-127 600-647 (774)
150 PRK07431 aspartate kinase; Pro 92.8 1.1 2.4E-05 47.0 11.5 125 85-215 277-407 (587)
151 PLN02550 threonine dehydratase 92.8 3.3 7.2E-05 44.5 14.9 134 77-218 415-575 (591)
152 PLN02317 arogenate dehydratase 92.7 0.53 1.1E-05 48.1 8.6 66 79-144 283-367 (382)
153 PRK07431 aspartate kinase; Pro 92.7 1.5 3.2E-05 46.1 12.2 124 86-216 447-580 (587)
154 cd04870 ACT_PSP_1 CT domains f 92.7 0.066 1.4E-06 41.2 1.7 30 317-346 2-31 (75)
155 cd04936 ACT_AKii-LysC-BS-like_ 92.6 0.84 1.8E-05 32.4 7.3 50 86-141 10-59 (63)
156 COG2150 Predicted regulator of 92.6 0.38 8.3E-06 44.2 6.6 73 76-150 90-166 (167)
157 cd04928 ACT_TyrKc Uncharacteri 92.4 0.14 3E-06 40.4 3.2 31 315-345 2-32 (68)
158 TIGR00657 asp_kinases aspartat 91.8 1.9 4E-05 43.7 11.2 115 90-215 315-437 (441)
159 TIGR01693 UTase_glnD [Protein- 91.6 0.85 1.8E-05 50.1 9.2 66 75-140 775-846 (850)
160 PRK09034 aspartate kinase; Rev 91.6 3.2 7E-05 42.6 12.8 118 87-215 319-446 (454)
161 PF04350 PilO: Pilus assembly 91.3 0.47 1E-05 39.9 5.5 65 88-152 51-120 (144)
162 PRK04435 hypothetical protein; 91.3 0.25 5.5E-06 43.5 4.0 39 309-347 64-102 (147)
163 PRK00275 glnD PII uridylyl-tra 91.3 0.65 1.4E-05 51.6 7.9 66 78-143 813-885 (895)
164 cd04933 ACT_AK1-AT_1 ACT domai 91.0 0.82 1.8E-05 36.6 6.2 40 86-129 11-50 (78)
165 PRK03381 PII uridylyl-transfer 90.9 0.88 1.9E-05 49.8 8.4 43 78-120 706-748 (774)
166 cd04888 ACT_PheB-BS C-terminal 90.9 0.22 4.8E-06 37.2 2.8 32 316-347 2-33 (76)
167 cd04892 ACT_AK-like_2 ACT doma 90.9 1.5 3.1E-05 30.6 6.8 52 86-141 10-61 (65)
168 PRK05092 PII uridylyl-transfer 90.9 0.83 1.8E-05 50.8 8.3 63 79-141 732-802 (931)
169 PF09383 NIL: NIL domain; Int 90.8 0.98 2.1E-05 34.8 6.4 56 163-218 4-71 (76)
170 cd04877 ACT_TyrR N-terminal AC 90.7 0.26 5.6E-06 37.7 3.1 32 316-347 2-33 (74)
171 cd04893 ACT_GcvR_1 ACT domains 90.6 0.22 4.8E-06 38.8 2.7 32 315-346 2-33 (77)
172 cd04919 ACT_AK-Hom3_2 ACT doma 90.5 0.87 1.9E-05 33.2 5.6 51 87-141 12-62 (66)
173 cd04916 ACT_AKiii-YclM-BS_2 AC 90.4 1.2 2.7E-05 32.1 6.3 40 86-127 11-50 (66)
174 TIGR01693 UTase_glnD [Protein- 90.3 1 2.2E-05 49.5 8.2 42 78-119 667-708 (850)
175 cd04922 ACT_AKi-HSDH-ThrA_2 AC 90.2 0.96 2.1E-05 32.7 5.6 51 86-140 11-61 (66)
176 PRK05007 PII uridylyl-transfer 90.0 0.96 2.1E-05 50.2 7.9 39 79-117 701-739 (884)
177 PRK15385 magnesium transport p 90.0 2.9 6.4E-05 40.0 10.1 73 77-149 140-219 (225)
178 PF13840 ACT_7: ACT domain ; P 89.8 0.99 2.1E-05 34.3 5.5 46 88-140 19-64 (65)
179 cd04931 ACT_PAH ACT domain of 89.4 0.37 8.1E-06 39.5 3.2 37 310-346 10-46 (90)
180 PRK04374 PII uridylyl-transfer 89.2 1.5 3.3E-05 48.8 8.5 67 77-143 794-866 (869)
181 PRK08818 prephenate dehydrogen 89.0 0.3 6.5E-06 49.3 2.8 34 314-347 295-329 (370)
182 PRK01759 glnD PII uridylyl-tra 88.9 1.4 3E-05 48.9 8.0 123 80-223 678-815 (854)
183 PRK09224 threonine dehydratase 88.9 15 0.00033 38.4 15.1 77 77-157 326-405 (504)
184 cd04868 ACT_AK-like ACT domain 88.9 3.5 7.6E-05 28.0 7.4 46 88-137 12-57 (60)
185 PRK05007 PII uridylyl-transfer 88.8 1.2 2.7E-05 49.4 7.6 67 76-142 805-877 (884)
186 cd04924 ACT_AK-Arch_2 ACT doma 88.8 1.3 2.7E-05 32.0 5.3 51 87-141 12-62 (66)
187 cd04895 ACT_ACR_1 ACT domain-c 88.7 0.46 1E-05 37.8 3.1 33 315-347 2-34 (72)
188 cd04904 ACT_AAAH ACT domain of 88.6 0.38 8.2E-06 37.3 2.6 30 316-345 2-31 (74)
189 PRK14434 acylphosphatase; Prov 88.5 1.2 2.6E-05 36.7 5.5 45 171-215 16-64 (92)
190 cd04923 ACT_AK-LysC-DapG-like_ 88.4 3.7 7.9E-05 29.1 7.4 38 86-127 10-47 (63)
191 PRK00275 glnD PII uridylyl-tra 88.3 1.6 3.4E-05 48.8 7.9 46 80-125 705-751 (895)
192 PRK09084 aspartate kinase III; 88.2 9.9 0.00021 39.1 13.1 114 88-215 318-443 (448)
193 COG0788 PurU Formyltetrahydrof 88.0 1.4 3E-05 43.7 6.5 154 76-240 4-183 (287)
194 PRK06291 aspartate kinase; Pro 87.9 3.9 8.5E-05 42.0 10.0 117 88-215 333-459 (465)
195 PRK03059 PII uridylyl-transfer 87.8 1.6 3.4E-05 48.5 7.6 47 80-126 679-726 (856)
196 cd04914 ACT_AKi-DapG-BS_1 ACT 87.6 2.3 4.9E-05 32.5 6.3 38 86-127 9-46 (67)
197 TIGR01124 ilvA_2Cterm threonin 87.1 24 0.00052 37.1 15.3 76 77-156 323-400 (499)
198 PF13740 ACT_6: ACT domain; PD 87.1 0.81 1.8E-05 35.4 3.6 34 314-347 2-35 (76)
199 cd04930 ACT_TH ACT domain of t 86.9 0.69 1.5E-05 39.6 3.4 35 312-346 39-73 (115)
200 PRK14426 acylphosphatase; Prov 86.6 2 4.2E-05 35.2 5.7 45 171-215 18-64 (92)
201 cd04937 ACT_AKi-DapG-BS_2 ACT 86.2 3.3 7.2E-05 30.8 6.3 49 87-141 12-60 (64)
202 cd04918 ACT_AK1-AT_2 ACT domai 86.1 3.1 6.7E-05 31.2 6.2 50 88-141 12-61 (65)
203 PRK08961 bifunctional aspartat 86.0 13 0.00027 41.4 13.3 116 86-215 332-457 (861)
204 PLN02551 aspartokinase 85.7 13 0.00029 39.3 12.7 115 87-215 377-505 (521)
205 PRK08526 threonine dehydratase 85.4 4.5 9.7E-05 41.1 8.8 66 77-142 324-395 (403)
206 PRK01759 glnD PII uridylyl-tra 85.2 2.8 6E-05 46.6 7.8 65 76-140 780-850 (854)
207 PRK06545 prephenate dehydrogen 85.0 0.63 1.4E-05 45.9 2.5 36 312-347 288-323 (359)
208 PRK04374 PII uridylyl-transfer 85.0 2.6 5.7E-05 47.0 7.5 47 80-126 691-738 (869)
209 PRK14429 acylphosphatase; Prov 84.8 2.8 6.2E-05 34.1 5.8 45 171-215 16-62 (90)
210 COG2716 GcvR Glycine cleavage 84.7 2.7 5.9E-05 39.1 6.3 105 80-185 6-115 (176)
211 PRK08639 threonine dehydratase 83.8 8.3 0.00018 39.1 9.9 80 77-158 334-416 (420)
212 cd04897 ACT_ACR_3 ACT domain-c 83.8 1.2 2.6E-05 35.7 3.2 34 315-348 2-35 (75)
213 cd04911 ACT_AKiii-YclM-BS_1 AC 83.6 3.4 7.4E-05 33.4 5.7 59 86-148 11-72 (76)
214 PRK09977 putative Mg(2+) trans 83.4 7.8 0.00017 36.7 8.9 67 80-149 145-213 (215)
215 PRK11899 prephenate dehydratas 83.2 1.2 2.7E-05 43.3 3.6 34 313-346 193-226 (279)
216 PRK14420 acylphosphatase; Prov 83.1 3.2 7E-05 33.6 5.5 45 171-215 16-62 (91)
217 PRK09181 aspartate kinase; Val 83.0 21 0.00045 37.4 12.6 116 88-215 341-462 (475)
218 PF00708 Acylphosphatase: Acyl 82.8 2.5 5.3E-05 33.9 4.6 45 171-215 18-64 (91)
219 PF10741 T2SM_b: Type II secre 82.7 6.9 0.00015 32.4 7.4 62 91-152 17-83 (110)
220 cd04921 ACT_AKi-HSDH-ThrA-like 81.8 6.5 0.00014 29.7 6.5 40 86-127 11-50 (80)
221 PRK09466 metL bifunctional asp 81.7 21 0.00046 39.8 12.7 117 88-215 329-450 (810)
222 PRK14422 acylphosphatase; Prov 81.3 4.3 9.4E-05 33.4 5.6 45 171-215 20-66 (93)
223 PRK14445 acylphosphatase; Prov 81.2 4.2 9.1E-05 33.2 5.5 45 171-215 18-64 (91)
224 TIGR00656 asp_kin_monofn aspar 81.2 4.2 9.2E-05 40.4 6.6 52 85-142 346-397 (401)
225 PRK14436 acylphosphatase; Prov 81.1 4.6 0.0001 33.1 5.7 45 171-215 18-64 (91)
226 TIGR02079 THD1 threonine dehyd 80.8 14 0.00031 37.4 10.2 80 78-159 324-406 (409)
227 PRK14428 acylphosphatase; Prov 80.5 5.4 0.00012 33.4 6.0 45 171-215 22-68 (97)
228 PRK11092 bifunctional (p)ppGpp 80.4 2 4.3E-05 47.0 4.3 50 294-347 610-659 (702)
229 TIGR00719 sda_beta L-serine de 80.1 1.7 3.7E-05 40.2 3.2 35 314-348 148-182 (208)
230 cd04915 ACT_AK-Ectoine_2 ACT d 80.0 7.5 0.00016 29.5 6.2 48 89-140 14-61 (66)
231 cd04896 ACT_ACR-like_3 ACT dom 79.3 1.9 4.1E-05 34.6 2.8 32 316-347 2-33 (75)
232 PRK14449 acylphosphatase; Prov 79.3 6.1 0.00013 32.2 5.8 45 171-215 17-63 (90)
233 COG0077 PheA Prephenate dehydr 79.2 1.6 3.4E-05 43.0 2.8 35 311-345 191-225 (279)
234 PRK14433 acylphosphatase; Prov 78.9 5.5 0.00012 32.4 5.5 45 171-215 15-61 (87)
235 PRK14427 acylphosphatase; Prov 78.9 5.9 0.00013 32.7 5.7 45 171-215 20-66 (94)
236 cd04929 ACT_TPH ACT domain of 78.8 1.7 3.6E-05 34.3 2.4 31 316-346 2-32 (74)
237 PRK14444 acylphosphatase; Prov 78.8 6.3 0.00014 32.3 5.8 45 171-215 18-64 (92)
238 PRK14637 hypothetical protein; 78.5 12 0.00026 33.5 8.0 105 88-201 6-130 (151)
239 PRK14430 acylphosphatase; Prov 78.5 6.1 0.00013 32.5 5.7 45 171-215 18-64 (92)
240 PRK14423 acylphosphatase; Prov 78.3 6.2 0.00013 32.3 5.6 45 171-215 19-65 (92)
241 PRK14439 acylphosphatase; Prov 77.4 6.1 0.00013 36.4 5.9 47 171-217 89-137 (163)
242 PF02700 PurS: Phosphoribosylf 77.2 13 0.00027 30.2 7.0 44 80-128 1-49 (80)
243 TIGR00691 spoT_relA (p)ppGpp s 77.1 2.8 6.1E-05 45.6 4.2 50 294-347 594-643 (683)
244 PRK14432 acylphosphatase; Prov 77.0 7.1 0.00015 32.2 5.6 45 171-215 16-63 (93)
245 PRK14442 acylphosphatase; Prov 77.0 6.5 0.00014 32.2 5.4 45 171-215 18-64 (91)
246 PRK14435 acylphosphatase; Prov 76.9 6.7 0.00014 32.1 5.4 45 171-215 16-62 (90)
247 PRK14447 acylphosphatase; Prov 76.8 7.3 0.00016 32.1 5.7 45 171-215 18-65 (95)
248 PRK14441 acylphosphatase; Prov 76.8 7.1 0.00015 32.1 5.6 45 171-215 19-65 (93)
249 TIGR01127 ilvA_1Cterm threonin 76.7 2.4 5.1E-05 41.9 3.3 36 311-346 302-337 (380)
250 PRK14438 acylphosphatase; Prov 76.6 7.4 0.00016 31.8 5.6 45 171-215 17-63 (91)
251 PRK02047 hypothetical protein; 75.9 21 0.00045 29.4 8.1 71 78-148 15-90 (91)
252 PRK14421 acylphosphatase; Prov 75.7 8.8 0.00019 32.2 5.9 45 171-215 18-64 (99)
253 PRK14440 acylphosphatase; Prov 75.3 8.5 0.00018 31.5 5.6 45 171-215 17-63 (90)
254 PRK14451 acylphosphatase; Prov 75.0 8.1 0.00017 31.6 5.4 45 171-215 17-63 (89)
255 cd04871 ACT_PSP_2 ACT domains 74.8 0.98 2.1E-05 36.1 0.1 30 317-346 2-32 (84)
256 PRK14645 hypothetical protein; 74.7 8.6 0.00019 34.6 6.0 110 86-205 5-136 (154)
257 PRK10820 DNA-binding transcrip 74.7 7.9 0.00017 40.4 6.6 68 82-152 3-71 (520)
258 PRK14448 acylphosphatase; Prov 73.8 9.2 0.0002 31.2 5.5 45 171-215 16-62 (90)
259 PRK14640 hypothetical protein; 73.8 47 0.001 29.7 10.4 107 92-205 8-136 (152)
260 PRK00907 hypothetical protein; 73.7 26 0.00056 29.3 8.2 69 79-147 17-90 (92)
261 PF01985 CRS1_YhbY: CRS1 / Yhb 73.6 23 0.00051 28.4 7.7 68 130-197 4-82 (84)
262 PRK14446 acylphosphatase; Prov 73.2 7.2 0.00016 32.0 4.7 45 171-215 16-62 (88)
263 PRK14425 acylphosphatase; Prov 73.0 11 0.00023 31.1 5.8 45 171-215 20-66 (94)
264 cd04910 ACT_AK-Ectoine_1 ACT d 72.8 15 0.00033 29.2 6.3 52 89-144 14-65 (71)
265 PRK06382 threonine dehydratase 72.4 3.8 8.1E-05 41.3 3.5 37 311-347 327-363 (406)
266 PRK14450 acylphosphatase; Prov 72.2 10 0.00023 30.8 5.5 45 171-215 16-63 (91)
267 PRK14443 acylphosphatase; Prov 72.2 12 0.00026 31.1 5.9 46 171-216 18-65 (93)
268 PF04455 Saccharop_dh_N: LOR/S 71.2 14 0.00029 31.6 6.1 56 90-145 15-74 (103)
269 PF14257 DUF4349: Domain of un 70.3 89 0.0019 29.5 12.0 73 77-149 49-124 (262)
270 PF02576 DUF150: Uncharacteris 70.2 25 0.00055 30.4 7.7 103 96-205 2-126 (141)
271 PRK04998 hypothetical protein; 69.9 33 0.00072 27.9 7.9 70 78-147 14-86 (88)
272 PRK14636 hypothetical protein; 69.9 78 0.0017 29.2 11.2 104 90-200 5-132 (176)
273 PRK05783 hypothetical protein; 69.8 30 0.00065 28.6 7.6 60 78-142 1-67 (84)
274 PRK14634 hypothetical protein; 69.4 86 0.0019 28.2 11.4 107 90-203 7-137 (155)
275 COG1828 PurS Phosphoribosylfor 69.2 19 0.0004 29.9 6.3 54 80-138 2-61 (83)
276 PRK14646 hypothetical protein; 69.1 37 0.00079 30.5 8.7 106 91-203 8-137 (155)
277 PRK06635 aspartate kinase; Rev 69.0 8.2 0.00018 38.4 5.0 50 86-141 350-399 (404)
278 PF03927 NapD: NapD protein; 69.0 26 0.00056 28.1 7.0 66 80-150 4-71 (79)
279 PRK11790 D-3-phosphoglycerate 68.9 4.1 8.8E-05 41.5 2.9 35 313-347 337-371 (409)
280 PRK14452 acylphosphatase; Prov 68.2 15 0.00032 31.4 5.7 45 171-215 34-80 (107)
281 cd04910 ACT_AK-Ectoine_1 ACT d 67.9 18 0.00039 28.8 5.8 44 172-215 17-62 (71)
282 PRK09436 thrA bifunctional asp 67.9 31 0.00067 38.4 9.6 122 86-215 325-457 (819)
283 PRK10622 pheA bifunctional cho 67.6 4.1 8.8E-05 41.4 2.6 34 313-346 296-329 (386)
284 PRK14437 acylphosphatase; Prov 67.2 14 0.00031 31.5 5.4 45 171-215 37-83 (109)
285 PF00585 Thr_dehydrat_C: C-ter 66.3 38 0.00083 27.6 7.6 78 76-157 7-87 (91)
286 cd04917 ACT_AKiii-LysC-EC_2 AC 66.3 20 0.00043 26.4 5.4 49 87-141 12-60 (64)
287 cd03709 lepA_C lepA_C: This fa 65.8 23 0.0005 27.8 6.0 55 161-215 3-61 (80)
288 PRK00227 glnD PII uridylyl-tra 65.3 32 0.00068 38.0 8.9 66 80-146 547-620 (693)
289 COG2844 GlnD UTP:GlnB (protein 65.2 16 0.00034 41.3 6.6 51 74-124 786-838 (867)
290 PRK10872 relA (p)ppGpp synthet 65.2 7.3 0.00016 43.1 4.1 50 294-347 650-699 (743)
291 PRK08198 threonine dehydratase 65.2 6.5 0.00014 39.2 3.5 39 309-347 322-360 (404)
292 PRK00092 ribosome maturation p 65.1 1E+02 0.0022 27.4 12.3 107 91-202 8-134 (154)
293 PRK05925 aspartate kinase; Pro 64.7 1.4E+02 0.0031 31.0 13.1 112 89-214 311-429 (440)
294 cd04920 ACT_AKiii-DAPDC_2 ACT 64.2 31 0.00067 25.8 6.2 48 87-140 11-58 (63)
295 PRK08210 aspartate kinase I; R 64.0 13 0.00029 37.1 5.4 50 86-141 349-398 (403)
296 COG3830 ACT domain-containing 63.6 5.4 0.00012 33.6 2.1 33 313-345 2-34 (90)
297 PRK14424 acylphosphatase; Prov 63.6 20 0.00043 29.8 5.5 45 171-215 21-67 (94)
298 cd03710 BipA_TypA_C BipA_TypA_ 62.8 23 0.0005 27.6 5.5 55 161-215 3-60 (79)
299 PRK14431 acylphosphatase; Prov 62.3 28 0.00062 28.4 6.1 44 171-215 16-61 (89)
300 PF00013 KH_1: KH domain syndr 61.6 29 0.00063 25.2 5.5 41 172-213 18-60 (60)
301 TIGR00657 asp_kinases aspartat 61.5 17 0.00038 36.8 5.8 50 86-141 388-437 (441)
302 cd04885 ACT_ThrD-I Tandem C-te 61.4 6.5 0.00014 29.6 2.1 29 317-346 1-29 (68)
303 PRK11898 prephenate dehydratas 61.0 9.4 0.0002 37.1 3.6 34 312-345 194-228 (283)
304 cd04891 ACT_AK-LysC-DapG-like_ 60.4 5.7 0.00012 27.4 1.5 27 321-347 8-34 (61)
305 TIGR01269 Tyr_3_monoox tyrosin 60.2 37 0.0008 36.0 7.9 69 80-149 40-114 (457)
306 PF09377 SBDS_C: SBDS protein 60.1 48 0.001 28.6 7.5 100 88-214 20-123 (125)
307 PF02641 DUF190: Uncharacteriz 59.7 10 0.00022 31.4 3.2 34 182-215 52-86 (101)
308 PRK00341 hypothetical protein; 59.6 66 0.0014 26.6 7.9 68 79-147 17-89 (91)
309 PF08753 NikR_C: NikR C termin 59.1 89 0.0019 24.8 9.0 70 81-150 3-74 (78)
310 PLN02551 aspartokinase 59.1 21 0.00045 37.9 6.0 56 81-140 447-504 (521)
311 PRK06291 aspartate kinase; Pro 58.4 18 0.00039 37.3 5.3 58 81-142 400-460 (465)
312 PRK13581 D-3-phosphoglycerate 56.6 9 0.00019 40.2 2.9 36 313-348 451-486 (526)
313 PRK07334 threonine dehydratase 55.3 13 0.00027 37.5 3.5 34 314-347 326-359 (403)
314 TIGR01270 Trp_5_monoox tryptop 53.9 14 0.00031 39.0 3.8 39 307-345 24-62 (464)
315 PRK09181 aspartate kinase; Val 53.3 44 0.00094 35.1 7.2 56 81-140 404-461 (475)
316 PRK08841 aspartate kinase; Val 53.2 36 0.00078 34.6 6.4 59 80-144 319-377 (392)
317 PRK14631 hypothetical protein; 53.2 1.9E+02 0.0041 26.7 11.8 105 91-202 9-155 (174)
318 cd04907 ACT_ThrD-I_2 Second of 52.8 1.2E+02 0.0026 24.3 9.1 75 80-157 2-77 (81)
319 PRK09034 aspartate kinase; Rev 52.4 35 0.00075 35.2 6.2 57 81-141 387-446 (454)
320 PLN02317 arogenate dehydratase 52.2 13 0.00028 38.3 3.1 34 313-346 282-315 (382)
321 PRK14638 hypothetical protein; 51.1 76 0.0016 28.4 7.4 101 92-201 10-131 (150)
322 cd02393 PNPase_KH Polynucleoti 50.6 44 0.00094 25.2 5.0 38 174-213 22-60 (61)
323 PF09186 DUF1949: Domain of un 50.6 52 0.0011 23.2 5.3 48 167-215 2-51 (56)
324 COG3978 Acetolactate synthase 50.2 15 0.00032 30.7 2.6 34 313-346 2-35 (86)
325 PRK14639 hypothetical protein; 48.9 93 0.002 27.5 7.5 94 98-200 5-118 (140)
326 cd04913 ACT_AKii-LysC-BS-like_ 48.4 11 0.00024 27.2 1.4 26 321-346 9-34 (75)
327 cd04906 ACT_ThrD-I_1 First of 48.2 20 0.00043 28.3 3.0 28 315-344 2-29 (85)
328 TIGR00302 phosphoribosylformyl 47.5 73 0.0016 25.3 6.1 53 82-139 3-65 (80)
329 PRK14632 hypothetical protein; 47.4 1.8E+02 0.004 26.6 9.4 106 93-202 11-137 (172)
330 KOG2797 Prephenate dehydratase 46.6 78 0.0017 32.5 7.4 37 78-114 280-316 (377)
331 PF04359 DUF493: Protein of un 46.6 84 0.0018 25.0 6.4 71 78-148 9-84 (85)
332 COG2102 Predicted ATPases of P 44.9 42 0.00091 32.4 5.1 121 99-219 19-175 (223)
333 cd01514 Elongation_Factor_C El 44.3 64 0.0014 24.7 5.2 55 161-215 3-60 (79)
334 PF00560 LRR_1: Leucine Rich R 44.2 8.4 0.00018 23.5 0.2 12 9-20 3-14 (22)
335 PRK14644 hypothetical protein; 43.4 1.4E+02 0.0031 26.4 7.8 95 98-199 6-118 (136)
336 PRK09436 thrA bifunctional asp 43.1 40 0.00088 37.5 5.4 64 86-151 406-471 (819)
337 PF00107 ADH_zinc_N: Zinc-bind 42.7 39 0.00085 27.2 4.0 46 175-225 46-92 (130)
338 cd04914 ACT_AKi-DapG-BS_1 ACT 42.5 14 0.00031 28.0 1.3 26 321-346 9-34 (67)
339 cd03713 EFG_mtEFG_C EFG_mtEFG_ 42.1 60 0.0013 24.8 4.8 55 161-215 3-59 (78)
340 PF13399 LytR_C: LytR cell env 41.3 1E+02 0.0022 24.2 6.0 59 81-140 3-65 (90)
341 cd03711 Tet_C Tet_C: C-terminu 41.3 75 0.0016 24.5 5.2 55 161-215 3-59 (78)
342 PRK12378 hypothetical protein; 41.2 67 0.0014 31.0 5.9 123 80-217 94-225 (235)
343 PRK05974 phosphoribosylformylg 38.5 1.2E+02 0.0027 24.0 6.2 54 81-139 2-65 (80)
344 PF04350 PilO: Pilus assembly 38.5 99 0.0021 25.8 5.9 58 175-235 58-127 (144)
345 PF13504 LRR_7: Leucine rich r 38.2 10 0.00022 22.2 -0.1 13 8-20 3-15 (17)
346 cd04097 mtEFG1_C mtEFG1_C: C-t 38.0 82 0.0018 24.3 5.0 55 161-215 3-59 (78)
347 COG3062 NapD Uncharacterized p 37.6 2.5E+02 0.0055 24.0 8.0 66 79-149 6-73 (94)
348 COG3283 TyrR Transcriptional r 37.2 91 0.002 33.1 6.4 70 82-154 3-73 (511)
349 PRK00110 hypothetical protein; 37.2 1.6E+02 0.0035 28.5 7.8 122 80-217 97-226 (245)
350 PLN02828 formyltetrahydrofolat 36.9 1.7E+02 0.0036 28.8 7.9 32 96-127 1-34 (268)
351 cd04098 eEF2_C_snRNP eEF2_C_sn 36.9 85 0.0019 24.6 5.0 55 161-215 3-61 (80)
352 cd04936 ACT_AKii-LysC-BS-like_ 36.7 33 0.00071 24.1 2.4 26 321-346 10-35 (63)
353 cd04932 ACT_AKiii-LysC-EC_1 AC 36.7 18 0.00039 28.4 1.1 26 321-346 11-36 (75)
354 smart00838 EFG_C Elongation fa 36.2 90 0.0019 24.4 5.0 55 161-215 5-61 (85)
355 PF09383 NIL: NIL domain; Int 35.9 1.3E+02 0.0028 23.0 5.7 51 92-143 18-70 (76)
356 PRK10553 assembly protein for 35.6 2.5E+02 0.0055 23.2 8.9 66 79-149 5-73 (87)
357 PF14257 DUF4349: Domain of un 34.9 1.5E+02 0.0032 28.0 7.1 51 171-221 63-122 (262)
358 COG0527 LysC Aspartokinases [A 34.5 75 0.0016 33.2 5.4 49 86-140 393-441 (447)
359 PF13840 ACT_7: ACT domain ; P 34.1 18 0.00039 27.4 0.7 24 323-346 19-42 (65)
360 COG1534 Predicted RNA-binding 34.0 2.1E+02 0.0046 24.5 7.1 58 128-202 29-88 (97)
361 COG4492 PheB ACT domain-contai 33.5 40 0.00086 30.7 2.8 37 309-345 67-103 (150)
362 cd04935 ACT_AKiii-DAPDC_1 ACT 32.2 24 0.00052 27.6 1.1 26 321-346 11-36 (75)
363 TIGR01327 PGDH D-3-phosphoglyc 32.2 32 0.00069 36.2 2.3 35 314-348 451-485 (525)
364 cd04096 eEF2_snRNP_like_C eEF2 31.9 88 0.0019 24.1 4.3 55 161-215 3-61 (80)
365 TIGR00300 conserved hypothetic 30.8 1.2E+02 0.0026 31.8 6.1 53 90-142 15-71 (407)
366 PF01709 Transcrip_reg: Transc 30.4 86 0.0019 29.9 4.7 59 89-150 172-231 (234)
367 cd08230 glucose_DH Glucose deh 30.1 2.9E+02 0.0064 26.4 8.4 26 194-219 240-265 (355)
368 PF05496 RuvB_N: Holliday junc 30.0 23 0.00049 34.4 0.8 21 20-40 48-68 (233)
369 cd02394 vigilin_like_KH K homo 29.9 1.3E+02 0.0029 21.8 4.8 38 175-213 21-61 (62)
370 PF00679 EFG_C: Elongation fac 29.7 79 0.0017 25.1 3.7 55 161-215 6-63 (89)
371 KOG3820 Aromatic amino acid hy 29.7 2.2E+02 0.0048 30.2 7.8 65 79-143 36-103 (461)
372 cd04934 ACT_AK-Hom3_1 CT domai 29.4 39 0.00084 26.4 1.9 28 319-346 9-36 (73)
373 PRK10343 RNA-binding protein Y 29.0 2.4E+02 0.0051 23.9 6.6 40 158-197 43-84 (97)
374 PRK13558 bacterio-opsin activa 28.6 7.1E+02 0.015 26.1 14.1 134 79-224 449-587 (665)
375 PRK14440 acylphosphatase; Prov 28.4 2.6E+02 0.0057 22.8 6.6 39 114-152 36-74 (90)
376 PRK14633 hypothetical protein; 28.2 4.3E+02 0.0094 23.6 10.2 101 92-200 6-128 (150)
377 cd04919 ACT_AK-Hom3_2 ACT doma 27.8 37 0.00081 24.5 1.5 26 321-346 11-36 (66)
378 PRK14421 acylphosphatase; Prov 27.8 95 0.0021 26.1 4.0 40 114-153 37-76 (99)
379 TIGR00253 RNA_bind_YhbY putati 27.3 2.3E+02 0.005 23.8 6.2 53 128-197 28-82 (95)
380 COG2150 Predicted regulator of 27.2 51 0.0011 30.7 2.5 31 315-345 94-126 (167)
381 COG0317 SpoT Guanosine polypho 27.2 67 0.0015 35.7 3.8 48 295-346 612-659 (701)
382 PRK14435 acylphosphatase; Prov 27.1 81 0.0017 25.7 3.4 39 115-153 36-74 (90)
383 cd04933 ACT_AK1-AT_1 ACT domai 26.5 34 0.00074 27.4 1.1 26 321-346 11-36 (78)
384 KOG2972 Uncharacterized conser 26.3 45 0.00098 33.1 2.1 63 82-149 207-270 (276)
385 COG1760 SdaA L-serine deaminas 26.3 4.4 9.5E-05 39.8 -4.8 71 80-150 180-251 (262)
386 PRK14444 acylphosphatase; Prov 25.7 1.3E+02 0.0029 24.6 4.4 39 114-152 37-75 (92)
387 PRK14647 hypothetical protein; 25.5 5E+02 0.011 23.3 11.4 102 92-200 10-138 (159)
388 PRK14449 acylphosphatase; Prov 25.5 1.3E+02 0.0029 24.4 4.4 38 115-152 37-74 (90)
389 PRK14451 acylphosphatase; Prov 25.4 98 0.0021 25.3 3.6 39 114-152 36-74 (89)
390 PRK09880 L-idonate 5-dehydroge 25.4 4E+02 0.0087 25.4 8.3 87 122-219 172-262 (343)
391 PRK14423 acylphosphatase; Prov 25.3 1.3E+02 0.0028 24.6 4.3 38 115-152 39-76 (92)
392 PF10842 DUF2642: Protein of u 25.0 57 0.0012 26.0 2.1 23 181-203 31-53 (66)
393 PRK14430 acylphosphatase; Prov 24.9 1.3E+02 0.0028 24.7 4.3 40 114-153 37-76 (92)
394 PRK14429 acylphosphatase; Prov 24.9 1.4E+02 0.0031 24.2 4.5 38 115-152 36-73 (90)
395 PF09869 DUF2096: Uncharacteri 24.7 2.2E+02 0.0048 26.7 6.1 57 159-216 110-166 (169)
396 COG1993 PII-like signaling pro 24.5 73 0.0016 27.8 2.8 34 182-215 55-89 (109)
397 KOG2219 Uncharacterized conser 24.4 94 0.002 34.8 4.2 48 2-57 795-842 (864)
398 PRK14445 acylphosphatase; Prov 24.3 1.1E+02 0.0023 25.0 3.7 39 114-152 37-75 (91)
399 PRK14425 acylphosphatase; Prov 24.1 1.2E+02 0.0026 24.9 4.0 40 114-153 39-78 (94)
400 PRK01002 nickel responsive reg 24.1 5.1E+02 0.011 22.9 8.8 72 78-150 56-130 (141)
401 PRK09084 aspartate kinase III; 23.7 1.3E+02 0.0029 31.0 5.0 55 81-141 386-443 (448)
402 smart00322 KH K homology RNA-b 23.7 2.3E+02 0.005 19.5 4.9 42 174-215 23-66 (69)
403 COG2844 GlnD UTP:GlnB (protein 23.5 80 0.0017 36.0 3.5 39 80-118 685-723 (867)
404 PF13516 LRR_6: Leucine Rich r 22.9 28 0.0006 21.2 -0.0 14 7-20 3-16 (24)
405 KOG0456 Aspartate kinase [Amin 22.8 1.2E+02 0.0026 32.3 4.5 39 86-126 481-519 (559)
406 PRK14420 acylphosphatase; Prov 22.4 1.2E+02 0.0025 24.6 3.5 38 115-152 36-73 (91)
407 KOG3360 Acylphosphatase [Energ 22.3 1.6E+02 0.0034 25.4 4.3 35 183-217 36-70 (98)
408 PRK14433 acylphosphatase; Prov 22.2 1.2E+02 0.0025 24.7 3.5 36 117-152 37-72 (87)
409 PRK02001 hypothetical protein; 22.0 4.1E+02 0.0088 24.0 7.2 91 99-201 14-121 (152)
410 COG3147 DedD Uncharacterized p 21.9 5.4E+02 0.012 25.2 8.3 67 78-146 150-219 (226)
411 PRK14448 acylphosphatase; Prov 20.8 1.4E+02 0.0031 24.3 3.7 38 115-152 36-73 (90)
412 KOG1250 Threonine/serine dehyd 20.8 58 0.0013 34.4 1.7 64 81-144 375-443 (457)
413 PRK05925 aspartate kinase; Pro 20.6 2.3E+02 0.0049 29.5 6.0 36 89-128 384-419 (440)
414 PF00533 BRCT: BRCA1 C Terminu 20.5 72 0.0016 23.2 1.8 36 168-203 16-51 (78)
415 PF09840 DUF2067: Uncharacteri 20.5 2.2E+02 0.0048 26.7 5.3 43 173-215 11-56 (190)
416 PRK14442 acylphosphatase; Prov 20.3 1.8E+02 0.0038 23.8 4.2 38 115-152 38-75 (91)
417 PF01330 RuvA_N: RuvA N termin 20.3 88 0.0019 23.4 2.2 22 183-204 5-26 (61)
418 PRK14428 acylphosphatase; Prov 20.2 1.9E+02 0.0041 24.2 4.4 38 115-152 42-79 (97)
419 PRK14466 ribosomal RNA large s 20.1 93 0.002 31.6 3.0 67 156-223 250-320 (345)
No 1
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=7e-53 Score=373.60 Aligned_cols=157 Identities=52% Similarity=0.827 Sum_probs=153.0
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~ 155 (349)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||+++++++.++||+|||+||+||++|.++++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 5899999999999999999999999999999999999997774 99999999999999999999999999999999999
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 018896 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (349)
Q Consensus 156 ~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~~ 234 (349)
.|+|||+||||++++++|.||++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||..
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~ 159 (161)
T PRK11895 81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK 159 (161)
T ss_pred hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999963
No 2
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=2.2e-52 Score=369.00 Aligned_cols=155 Identities=52% Similarity=0.801 Sum_probs=151.2
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchh
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~ 156 (349)
+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||+|+++++.++||.|||+||+||++|.+++++++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 589999999999999999999999999999999999997774 999999999999999999999999999999999999
Q ss_pred hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 018896 157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK 233 (349)
Q Consensus 157 V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~ 233 (349)
|+||||||||++++++|.||++++++|||||||++++++++|+||+++|||+|+++|+||||+|++|||++||.||.
T Consensus 81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~ 157 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157 (157)
T ss_pred eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999983
No 3
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=1.4e-52 Score=375.71 Aligned_cols=166 Identities=58% Similarity=0.878 Sum_probs=158.1
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~ 155 (349)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||++.++++.++||.+||+||+||++|+++++++
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 5899999999999999999999999999999999999999885 99999998888999999999999999999999999
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCC
Q 018896 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235 (349)
Q Consensus 156 ~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~~~ 235 (349)
+|+||||||||++++++|.||++++++|||||||+++++++||+||+++|||+|+++|+||||+|++|||++||.|+...
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~ 160 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV 160 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCcccccc
Q 018896 236 DTAPFWNF 243 (349)
Q Consensus 236 ~~~~~~~~ 243 (349)
...++.++
T Consensus 161 ~~~~l~~~ 168 (174)
T CHL00100 161 NTEYLRYI 168 (174)
T ss_pred hHHHHHhh
Confidence 65544433
No 4
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-51 Score=366.09 Aligned_cols=159 Identities=50% Similarity=0.776 Sum_probs=155.2
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
+|+|++|++++|+||+|+||+|+|+||||||+||+|++||+++ +|||++.||+..++||+|||+||+||++|.+++++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 6899999999999999999999999999999999999999997 49999999989999999999999999999999999
Q ss_pred hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 018896 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (349)
Q Consensus 155 ~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~~ 234 (349)
++++|||+|+||++++..|.|+.+++++|||+|+|++++++++|+||+++|+++|++.|+||||+|++|||.+||.||+.
T Consensus 82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~ 161 (163)
T COG0440 82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK 161 (163)
T ss_pred chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 018896 235 G 235 (349)
Q Consensus 235 ~ 235 (349)
.
T Consensus 162 ~ 162 (163)
T COG0440 162 K 162 (163)
T ss_pred C
Confidence 3
No 5
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-49 Score=373.13 Aligned_cols=215 Identities=50% Similarity=0.736 Sum_probs=200.8
Q ss_pred ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
..+.++|+|++||+|+||+|+||+|+|++||||||||.|+.+|++.+ ||||+.|.|+.++|.++||+||++|++|.||
T Consensus 72 ~qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDy 151 (309)
T KOG2663|consen 72 RQRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDY 151 (309)
T ss_pred cccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeec
Confidence 46899999999999999999999999999999999999999999985 8999999999999999999999999999999
Q ss_pred CCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 018896 152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (349)
Q Consensus 152 t~~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~R 231 (349)
+.++.|+|||||+||+ ++..+.|+| ||..++++++|+|||++ ++...|++|+|.|++|||. |+.|
T Consensus 152 t~e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-allr 216 (309)
T KOG2663|consen 152 TNEPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-ALLR 216 (309)
T ss_pred CCChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-HHHH
Confidence 9999999999999998 999999999 99999999999999999 7889999999999999999 8999
Q ss_pred CcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCc
Q 018896 232 EKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSG 311 (349)
Q Consensus 232 g~~~~~~~~~~~~~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~~~~~~~~~~~~vl~~~~~~~~~~~~~~ 311 (349)
.+++.++++|+|+++.||++.+..+...++... +.+|||||++++.++- | +++++..+
T Consensus 217 lk~~~la~i~rlta~f~grvvdis~~s~i~elt------------a~p~rV~~fl~l~dp~---------g-vle~~rSG 274 (309)
T KOG2663|consen 217 LKMGHLAPIWRLTAAFYGRVVDISETSCIVELT------------AKPGRVYPFLPLVDPK---------G-VLEEDRSG 274 (309)
T ss_pred HhhhccchHHHHhhhhccchhccccceeeeeec------------cCCCcccccccccCcc---------c-chhhcccc
Confidence 999999999999999999998877777755433 5679999999974442 2 66899999
Q ss_pred cceeEEEEEEeCCC
Q 018896 312 LRSHTLSMLVNNTP 325 (349)
Q Consensus 312 ~~~~~ls~~V~n~~ 325 (349)
.+.|+++.+|+|.|
T Consensus 275 l~a~trspl~n~v~ 288 (309)
T KOG2663|consen 275 LRAHTRSPLVNSVP 288 (309)
T ss_pred hhhcccccccccCh
Confidence 99999999999998
No 6
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.96 E-value=5.9e-29 Score=205.47 Aligned_cols=86 Identities=23% Similarity=0.443 Sum_probs=81.5
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
.+.+|+||++|+|+||||+||+|||+||||||+||+||+|++++ +|||++. ++..++||+|||+||+||++|.++++
T Consensus 5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~ 83 (96)
T PRK08178 5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQS 83 (96)
T ss_pred CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCC
Confidence 47789999999999999999999999999999999999999998 4999998 57899999999999999999999999
Q ss_pred chhhhhhee
Q 018896 154 EPHVERELM 162 (349)
Q Consensus 154 ~~~V~RELa 162 (349)
++.|++|+.
T Consensus 84 ~~~v~~e~~ 92 (96)
T PRK08178 84 DPTMFNKIA 92 (96)
T ss_pred chhHHHHHH
Confidence 999999974
No 7
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.95 E-value=1.4e-28 Score=198.96 Aligned_cols=78 Identities=27% Similarity=0.485 Sum_probs=73.9
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeEEE--ecC
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE--DIS 152 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVikV~--dlt 152 (349)
|+|+||++|+|+||+|+||+++|+||||||+||+||+|+++++ |||+++ +|++.++||+|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 5899999999999999999999999999999999999999984 999998 99999999999999999999999 777
Q ss_pred Cch
Q 018896 153 NEP 155 (349)
Q Consensus 153 ~~~ 155 (349)
+.+
T Consensus 81 ~~~ 83 (84)
T PRK13562 81 DNE 83 (84)
T ss_pred ccC
Confidence 653
No 8
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.95 E-value=1.9e-27 Score=188.82 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=71.2
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
|+|+|+++|+|+||+|+||+++|+||||||+||++|++++++. |||++.++++.++||+|||+||+||++|+++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 5899999999999999999999999999999999999999984 9999999999999999999999999999985
No 9
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.94 E-value=8.6e-27 Score=183.16 Aligned_cols=75 Identities=47% Similarity=0.753 Sum_probs=70.8
Q ss_pred hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 018896 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (349)
Q Consensus 158 ~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg 232 (349)
+||||||||++++++|.+|++|++.|+|+|||+++++++||+||+++|||+|++.|+||||+|++|||++||.||
T Consensus 1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg 75 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG 75 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence 599999999998899999999999999999999999999999999999999999999999999999999999997
No 10
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.93 E-value=6.3e-26 Score=179.97 Aligned_cols=73 Identities=27% Similarity=0.439 Sum_probs=69.3
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
||+|+|+++|+|+||+|+||+|+|+||||||+||++++|++++. |||+|. +++.++||.|||+||+||++|+.
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence 78999999999999999999999999999999999999999974 888885 89999999999999999999985
No 11
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.83 E-value=1e-20 Score=144.03 Aligned_cols=61 Identities=56% Similarity=0.950 Sum_probs=56.1
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEE
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV 148 (349)
|+||+|+||+++|+||||||+||+++++++++. |||+++++++.++||++||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999985 9999999999999999999999999987
No 12
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.59 E-value=8.5e-16 Score=127.47 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=37.3
Q ss_pred CCccceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 309 ~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
+....+|+||++|+|+||||+||+|||+|||||||||+||
T Consensus 3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg 42 (96)
T PRK08178 3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL 42 (96)
T ss_pred CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence 4456789999999999999999999999999999999997
No 13
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.58 E-value=8.9e-16 Score=124.68 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=34.8
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
++|+||++|+|+||||+||+|||+||||||+||+||
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg 36 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVT 36 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEec
Confidence 479999999999999999999999999999999997
No 14
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.52 E-value=5.8e-15 Score=117.58 Aligned_cols=36 Identities=42% Similarity=0.763 Sum_probs=34.8
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
++|+|+++|+|+||||+||+|||+||||||+||+||
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence 479999999999999999999999999999999997
No 15
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.48 E-value=2.1e-14 Score=114.31 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=34.9
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
++|+|+++|+|+||||+||+|||+||||||+||+||
T Consensus 2 m~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~ 37 (76)
T PRK11152 2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMT 37 (76)
T ss_pred ceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEee
Confidence 589999999999999999999999999999999997
No 16
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=99.29 E-value=1.1e-12 Score=125.28 Aligned_cols=40 Identities=38% Similarity=0.733 Sum_probs=38.3
Q ss_pred CccceeEEEEEEeCCCchhhhhhhhhcccccccceeeecC
Q 018896 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNNL 349 (349)
Q Consensus 310 ~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~~ 349 (349)
+..++|+|+++|+|+|||||||+|+||+||||||||.|++
T Consensus 73 qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 73 QRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred ccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 5779999999999999999999999999999999999986
No 17
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=99.01 E-value=8e-10 Score=89.85 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=69.4
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
||+|++.+.+..+||.|.||.++-++|||-+.++++...-|.+. +.++|+ +++.++.|..||+||.||..|+..-.
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~-s~R~~~lL~~QLeKl~Dv~~V~i~~~ 78 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD-SDRSVDLLTSQLEKLYDVAHVEITQS 78 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc-CCCChHHHHHHHHHHccceeEEEeeh
Confidence 89999999999999999999999999999999999999888776 788887 66779999999999999999986543
No 18
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.85 E-value=1.3e-08 Score=73.84 Aligned_cols=64 Identities=28% Similarity=0.463 Sum_probs=55.1
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-EEEEEEeCChHHHHHHHHHHhcCe
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQLNKLV 143 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-iiTIVV~gdd~~veQLiKQL~KLi 143 (349)
|+|.+.+.|+||+|.+|+.+|+++|+||.++......+.. .+.++...+....+++.+.|+++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHccc
Confidence 6899999999999999999999999999999999988843 455555567788999999998875
No 19
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=98.83 E-value=1.4e-09 Score=83.05 Aligned_cols=26 Identities=58% Similarity=0.974 Sum_probs=24.3
Q ss_pred CCCchhhhhhhhhcccccccceeeec
Q 018896 323 NTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 323 n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
|+||+|+||+|||+||||||+||+|+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~ 26 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVG 26 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEee
Confidence 89999999999999999999999986
No 20
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.82 E-value=1.5e-08 Score=88.40 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=85.0
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHH---HhcCeeeeEEEecCC
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ---LNKLVNVIKVEDISN 153 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQ---L~KLiDVikV~dlt~ 153 (349)
|+-.+||+|+|||||-|..++..+...|+||..++.+.|.++|+++++|+.++.. .+..+. .-++-||+.|+-=
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A-~~~Lee~gF~Vr~~dVlaVEme-- 77 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEA-HSVLEEAGFTVRETDVLAVEME-- 77 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHH-HHHHHHCCcEEEeeeEEEEEec--
Confidence 6778999999999999999999999999999999999999999999999866653 344332 3455566555521
Q ss_pred chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC--------ChhHHHHHHHHhccCCcEE
Q 018896 154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG--------DPGKMVAVQRNLSKFGIKE 220 (349)
Q Consensus 154 ~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG--------~~~KIdafi~~L~~fGIlE 220 (349)
-.|..- ..|++.++.. |++-+|+.-=++- ..+.+|..++.|+.-||.-
T Consensus 78 --------------D~PG~l---~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~ 133 (142)
T COG4747 78 --------------DVPGGL---SRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKL 133 (142)
T ss_pred --------------CCCCcH---HHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCee
Confidence 123333 3444444332 2333333222221 3467899999999999863
No 21
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.75 E-value=9.2e-08 Score=69.29 Aligned_cols=69 Identities=59% Similarity=0.947 Sum_probs=58.1
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhcCeeeeEE
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~KLiDVikV 148 (349)
|+|.+.+.|+||+|.+|+.+|++.|+||.++........+ .+.+.+......+++++++|.++-+|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 7899999999999999999999999999999987642233 46666653337899999999999999987
No 22
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.69 E-value=8.6e-08 Score=71.90 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=42.2
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS 126 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~ 126 (349)
+.|+|.++|+||+|++|+.+|+++|+||+++.+.+.++++.+.+.++
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~ 48 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVS 48 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEEC
Confidence 57899999999999999999999999999999988877766777774
No 23
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.59 E-value=2.1e-07 Score=67.07 Aligned_cols=68 Identities=26% Similarity=0.465 Sum_probs=58.1
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te--d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
|.+.+.|+||+|++|+.+|+.+|+||.++.+...+ +...+++.++.. ..++++++|.++.+|.+|..+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 67899999999999999999999999999998765 334577777543 588999999999999999864
No 24
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.58 E-value=6.3e-07 Score=69.09 Aligned_cols=73 Identities=27% Similarity=0.398 Sum_probs=57.9
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~-gdd~~veQLiKQL~KLiDVikV~ 149 (349)
.-.-.|.|.+.|+||+|+.|+.++++.|.||.++.+....+. ..+++.+. .+-+.+++|++.|+++-+|.+|+
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 345689999999999999999999999999999999987533 33444433 47788999999999999999996
No 25
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.50 E-value=6.3e-07 Score=65.98 Aligned_cols=70 Identities=26% Similarity=0.366 Sum_probs=58.2
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--CcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~ 149 (349)
|.|.+.+.|+||+|++|+.+|++.|+||+++......+ ...+.+++. .+...++.++++|+++.+|.++.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence 57899999999999999999999999999998765543 234666654 57788999999999998887653
No 26
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.47 E-value=6.5e-07 Score=64.83 Aligned_cols=69 Identities=30% Similarity=0.425 Sum_probs=58.0
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te--d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
+|.+.+.|+||+|.+|+.+|++.|+||.++.+.... +.+.+.|.+++. .+++++++|+++-.|.+|..+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 478899999999999999999999999999987643 334566777654 688999999999999998753
No 27
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.46 E-value=5.2e-07 Score=90.46 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=65.6
Q ss_pred ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~-gdd~~veQLiKQL~KLiDVikV 148 (349)
.+.+.+|.|++.++|+||+|.+|+++|+++|+||+|+...+.++ ...+.|+++ .++..++++++||+||.+|.+.
T Consensus 343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 44567899999999999999999999999999999999887654 245888887 7889999999999999998664
No 28
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.42 E-value=3.6e-07 Score=67.49 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=57.0
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
|-+..+|+||+|++|+.++++.|+||.++....+.+.+.+.+.++.. .+++++++|.++.+|++|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 45688999999999999999999999999876554445567666644 788999999999999999764
No 29
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.36 E-value=3.3e-06 Score=63.41 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=57.0
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
.|.+.+.|+||.|.+|+..+++.|.||..++..... .... +++.+.+.+..+++|+++|.++-+|.+|+.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 578999999999999999999999999999874322 2223 4444454455899999999999999999854
No 30
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.35 E-value=4e-06 Score=61.00 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=58.1
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
.|.+.+.|+||+|++|+.+|++.++||.++...... +...+++.+++. +.++.++++|++.-+|..|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 478899999999999999999999999999876543 334577777765 678899999999999999874
No 31
>PRK08577 hypothetical protein; Provisional
Probab=98.33 E-value=5.3e-06 Score=71.07 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=62.4
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEe--CChHHHHHHHHHHhcCeeeeEEEec
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~--gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
....+.|.+.+.|+||+|+.|+.+|+..++||.++.+......+ .+.+++. ..+..+++++++|.++-+|..|...
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 34578999999999999999999999999999999987655333 4555444 3346799999999999999999854
No 32
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=98.28 E-value=2.5e-06 Score=61.63 Aligned_cols=49 Identities=24% Similarity=0.541 Sum_probs=41.9
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEeCChH
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTER 130 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~gdd~ 130 (349)
|++.+.|+||.|.||+.+|+++|+||+++.+.+++ +.+++.+.++..++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~ 50 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPER 50 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHH
Confidence 46899999999999999999999999999999887 55568888875333
No 33
>PRK00194 hypothetical protein; Validated
Probab=98.27 E-value=1.4e-06 Score=68.68 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=56.6
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHHhcCeeeeEEE
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL~KLiDVikV~ 149 (349)
|+++.|++.-.|+||++++|+++|+++|+||..+......+.-.++++++.+. ...+.+.+.|.++.+...++
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 56899999999999999999999999999999998776433333666666443 33677777777777666655
No 34
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=98.22 E-value=9.9e-06 Score=62.13 Aligned_cols=70 Identities=9% Similarity=0.268 Sum_probs=58.5
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
.|.|...|++|+|+.|+.+++..|+||.++.+... +.-.+++.+. +-..+++++++|.++..|.+|+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 58899999999999999999999999999998653 2212555554 6677999999999999999998653
No 35
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.20 E-value=4.8e-06 Score=61.78 Aligned_cols=69 Identities=22% Similarity=0.411 Sum_probs=55.2
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+-+...|+||.|++|+.+|+++|+||.++.+.+....+ .+.+.++++. ...+.+.|.++.+|..|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~--~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV--PDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC--CHHHHHHHHcCCCccEEEEEe
Confidence 45689999999999999999999999999987764333 4666676532 457888899999999888764
No 36
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.15 E-value=2.3e-05 Score=54.34 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=56.1
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~ 149 (349)
|.+.+.|+||.+++++.+|+..++||.++...... +...+.+.+. .+...++.++++|.++..|.+|+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999999999999999999999987654 2234555554 45677999999999999998875
No 37
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=4.4e-05 Score=57.31 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=55.6
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~-gdd~~veQLiKQL~KLiDVikV 148 (349)
+|.+.+.|+||.|++|+.++++.|.||.++......+. ..+.+++. .+.+.++++++.|+++.+|.--
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~ 70 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL 70 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence 47899999999999999999999999999998664422 23555555 4778899999999999998753
No 38
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.04 E-value=2.6e-05 Score=58.13 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=48.8
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te--d~giiTIVV~gdd~~veQLiKQL~K 141 (349)
+.+++.+.|+||.|.+++++|++.|+||.++...... ..+.+.++++.++ ..+++.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence 6899999999999999999999999999999877753 2556777787433 56677666654
No 39
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.99 E-value=5.9e-05 Score=58.53 Aligned_cols=65 Identities=23% Similarity=0.395 Sum_probs=51.4
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cE--EEEEEeCC--hHHHHHHHHHHhcCee
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVVSGT--ERVLRQVVEQLNKLVN 144 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-gi--iTIVV~gd--d~~veQLiKQL~KLiD 144 (349)
..|.+.+.|+||.|.+|+.+|+++|+||.++..-+..+. .. +.+-+++. +..++++++.|++..+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 367788899999999999999999999999998887653 33 44445554 6778888898887443
No 40
>PRK04435 hypothetical protein; Provisional
Probab=97.98 E-value=5.1e-05 Score=66.64 Aligned_cols=77 Identities=32% Similarity=0.421 Sum_probs=61.8
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEE--eCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV--~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
.-+.-+|.+.+.|+||+|++|+.++++.|.||.+++..... +...+++++ .+.+..+++|+.+|+++-.|.+|+-+.
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 34567999999999999999999999999999999875332 223355554 444558999999999999999998764
No 41
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.91 E-value=6.4e-05 Score=56.98 Aligned_cols=63 Identities=11% Similarity=0.196 Sum_probs=47.8
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-C--CcE--EEEEEeCChHHHHHHHHHHhcCeee
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-D--KAL--FTIVVSGTERVLRQVVEQLNKLVNV 145 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d--~gi--iTIVV~gdd~~veQLiKQL~KLiDV 145 (349)
+++.+.|+||.|.+++.++++.|.||.++...+.. + ... +++.+.. +..++.|++.|++-..|
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-~~~~~~i~~~L~~~~~~ 69 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-RSKENELIEELKAKFTV 69 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-chHHHHHHHHHhCcccE
Confidence 78999999999999999999999999999887752 2 233 4444433 33478888888776444
No 42
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.89 E-value=5.4e-05 Score=56.43 Aligned_cols=59 Identities=31% Similarity=0.462 Sum_probs=45.2
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhc
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~K 141 (349)
.+++.+.|+||.|.+++.+|+++|+||+++...+....+ .+.|.+++++. +++++.|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~--~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNP--RPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCH--HHHHHHHHH
Confidence 688999999999999999999999999999887764444 36666664332 355555544
No 43
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.88 E-value=9.4e-05 Score=56.47 Aligned_cols=63 Identities=17% Similarity=0.349 Sum_probs=51.1
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcE--EEEEEeC--ChHHHHHHHHHHhcCee
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSG--TERVLRQVVEQLNKLVN 144 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~gi--iTIVV~g--dd~~veQLiKQL~KLiD 144 (349)
+.+.+.|+||.|.+|...|+++|+||.++.--|... .+. +-|-+.+ ++..++++++.|.+..+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~ 69 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTE 69 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 567779999999999999999999999997777665 343 4555666 57889999999988654
No 44
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.88 E-value=4.9e-05 Score=58.18 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=46.8
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC----CcE--EEEEEeCCh-HHHHHHHHHHhcC
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD----KAL--FTIVVSGTE-RVLRQVVEQLNKL 142 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted----~gi--iTIVV~gdd-~~veQLiKQL~KL 142 (349)
|++...|+||.+++|+.+|+++|.||..+.....+. .++ +++.++.++ ..+.++.+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 789999999999999999999999999999865542 244 566666443 3467777766544
No 45
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.86 E-value=2.1e-05 Score=62.21 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=54.5
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHHhcCeeeeEEE
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL~KLiDVikV~ 149 (349)
++.|++...|+||++++|++.|+++|.||..+......+.-.++++++.+. ..++++.+.|++|-+-..++
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~ 73 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKELGVK 73 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 478999999999999999999999999999998776322212666776543 45888888887776554444
No 46
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=9.3e-05 Score=53.60 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=47.0
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC---Cc--EEEEEEeC-ChHHHHHHHHHHhcC
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KA--LFTIVVSG-TERVLRQVVEQLNKL 142 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted---~g--iiTIVV~g-dd~~veQLiKQL~KL 142 (349)
+.|.+.|+||.|.+|+.+++..|.||.++...+... .+ .+.+.+.. +...++++++.|.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 357889999999999999999999999999876532 33 35555443 446788999888764
No 47
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.75 E-value=8.5e-05 Score=53.88 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=38.0
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeC
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG 127 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~g 127 (349)
|.+.+.|+||.|.+++++|++.|+||.++...+....+ .+.+.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 68899999999999999999999999999876655333 46666664
No 48
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.75 E-value=0.00019 Score=55.78 Aligned_cols=64 Identities=28% Similarity=0.393 Sum_probs=53.0
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcC
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KL 142 (349)
...|+++-.|+||++++|++.+++.|.||..+......+.-.+.+.++.++...+++.+.|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 4579999999999999999999999999999999987765457777887788899999988776
No 49
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.71 E-value=2.6e-05 Score=58.49 Aligned_cols=32 Identities=41% Similarity=0.646 Sum_probs=29.9
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.|++.|.|+||+|++|+.+|+++|+||+++.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~ 34 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSI 34 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEE
Confidence 47889999999999999999999999999875
No 50
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.70 E-value=0.00028 Score=51.60 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=40.4
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd 129 (349)
.|.|.+.|+||+|.+|+++|+..|+||.++.+...++.....+.+.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 5789999999999999999999999999999887766444566665433
No 51
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.67 E-value=0.00028 Score=46.11 Aligned_cols=57 Identities=30% Similarity=0.425 Sum_probs=44.8
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHH
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQL 139 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL 139 (349)
|++...|+||.+.+|++.|+++|+||.++........+ .+++.+...+ ..+.++++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 46888999999999999999999999999987765343 3666676443 566776665
No 52
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00012 Score=56.35 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=46.9
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH-HHHHHHHHHhcCe
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-VLRQVVEQLNKLV 143 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~-~veQLiKQL~KLi 143 (349)
+++.-.|+||.+++|+++|+.+|+||..++.....+.=.+.+.++.++. .++++.+.|+++-
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999999999999975554432225556665443 5777777776654
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.66 E-value=4.3e-05 Score=55.32 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=30.9
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
|+|.+.+.|+||+|++|+++|+.+|+||.++..
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~ 33 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQ 33 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEE
Confidence 678999999999999999999999999998864
No 54
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.00016 Score=55.17 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=47.2
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHHhcC
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKL 142 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd--~~veQLiKQL~KL 142 (349)
+|++...|+||++++|++.|+.+|+||..+........+. +.+.++.+. ..++++.+.|+++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999998875334444 555555443 2477777776654
No 55
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.63 E-value=0.00035 Score=62.23 Aligned_cols=77 Identities=27% Similarity=0.362 Sum_probs=65.2
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeee-ecCCCcEEEEEE--eCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG-LNVDKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg-~Ted~giiTIVV--~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+-+..+|++.++++.|.|+++....++++.||-++... |-++..-+||.+ ++-+..++.|+..|+|+..|.+|+-+.
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg 148 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG 148 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence 34678999999999999999999999999999999877 444444466655 467888999999999999999998654
No 56
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.00067 Score=50.26 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=45.7
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC------ChHHHHHHHHHHhc
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG------TERVLRQVVEQLNK 141 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g------dd~~veQLiKQL~K 141 (349)
.|.|...|+||+|.+|+++|+..|+||.++.+....+....++.+.. +++..++|.+.|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 57899999999999999999999999999998766554344555432 23455556666644
No 57
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.52 E-value=0.00065 Score=52.24 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=37.6
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS 126 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~ 126 (349)
.|.|.+.|+||+|.+|+++|++.|+||.+..+...++....++.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~ 48 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT 48 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEE
Confidence 6889999999999999999999999999999876544333555553
No 58
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.48 E-value=0.0011 Score=61.05 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=78.3
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeee----eEEEec
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNV----IKVEDI 151 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDV----ikV~dl 151 (349)
+++...|+++-.||||++++|++++++.|.||...+...-.++--+.+.|++....+.++...|.++..- +.+...
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~~~ 84 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRT 84 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEEec
Confidence 4477899999999999999999999999999999998877765446666788777788888877666532 223333
Q ss_pred CCchhhhhhee-eEEEeCCCCCHH----HHHHHHHhcCcEEEEecCC
Q 018896 152 SNEPHVERELM-LIKLNGDTSTWP----EIMWLVDIFRAKVVDISEH 193 (349)
Q Consensus 152 t~~~~V~RELa-LIKV~~~~~~R~----EI~~la~iFrAkIVDvs~~ 193 (349)
.... .++.. .+.|.+....|+ +|-+....++..|.|.+.+
T Consensus 85 ~~~~--~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~ 129 (190)
T PRK11589 85 TARP--RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR 129 (190)
T ss_pred cccc--cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence 2211 22222 255554443444 4455555667777666443
No 59
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.43 E-value=0.00073 Score=52.33 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=46.3
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe----C----ChHHHHHHHHHHhcC
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS----G----TERVLRQVVEQLNKL 142 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~----g----dd~~veQLiKQL~KL 142 (349)
.|+|+..|+||.|.+|++.|++.|.||.+..+....+.-.-++.|. + +++..++|.+.|.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999985533223344442 1 245567777777653
No 60
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.0016 Score=49.96 Aligned_cols=61 Identities=28% Similarity=0.387 Sum_probs=44.6
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe---C----ChHHHHHHHHHHhc
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS---G----TERVLRQVVEQLNK 141 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~---g----dd~~veQLiKQL~K 141 (349)
.|.|...|+||.|.+|+++|++.|+||.+..+..+.+.-. =++.|. + +++..+++.+.|.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999877744322 233332 1 34456666666654
No 61
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=97.34 E-value=0.0016 Score=50.47 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=51.6
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-E--EEEEEeCChHHHHHHHHHHhcCee
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGTERVLRQVVEQLNKLVN 144 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-i--iTIVV~gdd~~veQLiKQL~KLiD 144 (349)
.|.+.+.|+||.|.+|...|+.+|+|+..|.--|..... . +=|-+++.+..+++++++|.+...
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~ 68 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVA 68 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcC
Confidence 356667899999999999999999999999988877553 2 445566777778999999887654
No 62
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.30 E-value=0.00086 Score=52.29 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=46.5
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
..|++.-.|+||++++|+++++.+|.||..+......+.-.|.+.++.+....++|.+.|.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHH
Confidence 47899999999999999999999999999999887333223666666444445556555443
No 63
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=97.17 E-value=0.0015 Score=60.59 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=64.4
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--CcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchh
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~ 156 (349)
..-||+.++|+||+|..++|+.+.+|.||.-...-...+ .+.+-+-+.|-++ .+.|+..|+.+-.|++|+.+..-+.
T Consensus 2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d-~e~l~~~lks~d~v~ev~i~~sle~ 80 (218)
T COG1707 2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDD-FEKLLERLKSFDYVIEVEIHRSLEE 80 (218)
T ss_pred cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCC-HHHHHHHhhccceEEEeeecchHHH
Confidence 356899999999999999999999999998665543333 3456666775544 7889999999999999998888665
Q ss_pred hhhh
Q 018896 157 VERE 160 (349)
Q Consensus 157 V~RE 160 (349)
++--
T Consensus 81 iyGK 84 (218)
T COG1707 81 IYGK 84 (218)
T ss_pred HhCc
Confidence 5543
No 64
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.16 E-value=0.0031 Score=49.32 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=44.3
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe-C-----ChHHHHHHHHHHhc
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS-G-----TERVLRQVVEQLNK 141 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~-g-----dd~~veQLiKQL~K 141 (349)
.|.|+..|+||.|.+|++.|++.|+||.+-.+..+.+.-. =++.|. . +++..+++.+.|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA 69 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999987655432 233332 1 22445555555543
No 65
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.11 E-value=0.0016 Score=63.06 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=51.3
Q ss_pred cCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEE--EEEEeC-ChHHHHHHHHHHhcCe
Q 018896 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALF--TIVVSG-TERVLRQVVEQLNKLV 143 (349)
Q Consensus 75 ~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gii--TIVV~g-dd~~veQLiKQL~KLi 143 (349)
.+|.++.|++...|+||+.++||++|+.+|+||+.++.......+++ ++.++. ....+++|...|+++-
T Consensus 3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~ 74 (286)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIA 74 (286)
T ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999754455554 444542 2223555655555443
No 66
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.05 E-value=0.00037 Score=50.25 Aligned_cols=32 Identities=44% Similarity=0.641 Sum_probs=29.4
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
|++.+.|+||+|++++.+|+++|.||+++.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~ 32 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIA 32 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEE
Confidence 46789999999999999999999999998864
No 67
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.05 E-value=0.001 Score=67.02 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=60.2
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
..++|.+.=+|+||++++|+.++++.|+||..+.+....+.+++.|-+++ ..-+.++++|+++.+|++|..+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 45899999999999999999999999999999999776655567666764 3355788999999999998754
No 68
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0049 Score=52.60 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=55.8
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeCChHHHHHHHHHHhcCeeeeEE
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~gdd~~veQLiKQL~KLiDVikV 148 (349)
.+..|.+.+.|+||.|.+|...|+.+|+|+..|.--|..... + +=|-+.+....+++++++|.+...-++|
T Consensus 40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv 113 (115)
T cd04930 40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL 113 (115)
T ss_pred ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence 367888888999999999999999999999999998875543 2 4455666666688888988876554443
No 69
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0043 Score=50.87 Aligned_cols=65 Identities=12% Similarity=0.232 Sum_probs=50.9
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeCC-hHHHHHHHHHHhc
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNK 141 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~gd-d~~veQLiKQL~K 141 (349)
..+..|.+.+.|+||.|.+|...|+++|+|+..|.--|..... + +=|-+++. +..++++++.|.+
T Consensus 12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 3456778888999999999999999999999999998876543 2 33445553 6677888888876
No 70
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.93 E-value=0.0021 Score=62.09 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=50.0
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeC--ChHHHHHHHHHHhcCe
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLV 143 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~g--dd~~veQLiKQL~KLi 143 (349)
.|+++.|++.-.|+||.++.|+++|+.+|.||+.++.......+. |++.++. ....+++|...|+++-
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999887333344 4444543 1233555555554444
No 71
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.82 E-value=0.0082 Score=47.65 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=46.0
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-C----ChHHHHHHHHHHh
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G----TERVLRQVVEQLN 140 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-g----dd~~veQLiKQL~ 140 (349)
..|.|...|+||.|.+|+..|++.|++|.+-.++--.+... |-+.-. | +++..+.|.++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999988876555433 444322 2 3455667776663
No 72
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.80 E-value=0.0021 Score=59.16 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=49.5
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--Cc--E--EEEEEeC-ChHHHHHHHHHHhcCeeee
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KA--L--FTIVVSG-TERVLRQVVEQLNKLVNVI 146 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~g--i--iTIVV~g-dd~~veQLiKQL~KLiDVi 146 (349)
.|.+++...|+||.+.+||.+|+.+|+||++|+...... .+ + +.+.+.- .+..++++..+|+++-+=+
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL 169 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTEL 169 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999875442 22 2 5555552 3334666666665554433
No 73
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.78 E-value=0.0012 Score=47.52 Aligned_cols=33 Identities=55% Similarity=0.990 Sum_probs=31.4
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
|+|.+.+.|+||+|+.++.+|+..|+||+++..
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~ 33 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTV 33 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEe
Confidence 899999999999999999999999999999864
No 74
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.77 E-value=0.0089 Score=47.08 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=39.1
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS 126 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~ 126 (349)
+.|.|+..|+||++.+|+|.|++.|+||.+-.+-.+.+.-. -+++|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~ 49 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence 68999999999999999999999999999998877755433 355554
No 75
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.70 E-value=0.0086 Score=64.72 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=59.5
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeEEEec
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
.-.|.|.+.|++|+|+.|+.+++..+.||.+++..... .+. +++.+. .+-+.+++|+++|.++-+|.+|...
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKD-GRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 34899999999999999999999999999999975433 332 444443 4778899999999999999999864
No 76
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.62 E-value=0.0038 Score=64.66 Aligned_cols=74 Identities=20% Similarity=0.384 Sum_probs=59.4
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
..++|-+.-.|+||++.+|+.+|++.++||.++.++..+..+.-.++++-|+..-+.++++|.++.+|.+|..+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence 45778777799999999999999999999999999987766553334444455557788899999999988765
No 77
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=96.58 E-value=0.0099 Score=63.89 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=58.6
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~-gdd~~veQLiKQL~KLiDVikV~ 149 (349)
.-.|.|.+.|++|+|+.|+.++++-+.||.++++....+. ..+.+.+. .+-+.+..|+.+|.++-+|.+|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 4589999999999999999999999999999998654322 23444443 47788999999999999999985
No 78
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.017 Score=45.52 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=47.6
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeCChHHHHHHHHHHhc
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~gdd~~veQLiKQL~K 141 (349)
|.+.+.|+||.|.++...|+++|+|+..|.--|..... + +=|-+.+....++++++.|.+
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 45566899999999999999999999999988876553 2 445566766678888887765
No 79
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=96.45 E-value=0.015 Score=63.46 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=59.5
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEe-CChHHHHHHHHHHhcCeeeeEEEec
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~-gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
-.|.|.+.|++|+|+.|+.+++..+.||.++++......+ .+++++. .+-..+++|+++|.++-+|.+|...
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL 741 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence 4889999999999999999999999999999985433123 3454444 4778899999999999999999864
No 80
>PRK06635 aspartate kinase; Reviewed
Probab=96.37 E-value=0.034 Score=55.06 Aligned_cols=121 Identities=20% Similarity=0.256 Sum_probs=82.7
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEeCChHHHHHHHHHHhcC---eeeeEEEecCCchhhhhhe
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSGTERVLRQVVEQLNKL---VNVIKVEDISNEPHVEREL 161 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~gdd~~veQLiKQL~KL---iDVikV~dlt~~~~V~REL 161 (349)
..|+||+|.||...|.+.|+||+.++.+.+++ +.-++++++.+ ..++..+.|+++ ..+..+. +.+.+
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~--~~~~a~~~L~~~~~~~~~~~i~-------~~~~i 340 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD--DLEKALELLEEVKDEIGAESVT-------YDDDI 340 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH--HHHHHHHHHHHHHHHcCcceEE-------EcCCe
Confidence 67899999999999999999999998876665 44588888632 244555556553 2332232 56778
Q ss_pred eeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 162 MLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 162 aLIKV~~~-----~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
+++.|... +..-.+|++....++.+|.-++....-+-++=+.+..+..++.|..
T Consensus 341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh~ 399 (404)
T PRK06635 341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALHE 399 (404)
T ss_pred EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHHH
Confidence 88888532 2344578888888888888775444444445555666666777653
No 81
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.017 Score=46.25 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=44.2
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeee--ecCCCcE--EEEEEeC----ChHHHHHHHHHHhc
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKAL--FTIVVSG----TERVLRQVVEQLNK 141 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg--~Ted~gi--iTIVV~g----dd~~veQLiKQL~K 141 (349)
.|.|...|+||.|.+|+..|.+.|++|.+-.++ .-.+... |-+..+| ++...+.|...|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 688999999999999999999999999998888 3333322 5553333 34555666666543
No 82
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.21 E-value=0.012 Score=54.40 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=46.2
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeC--ChHHHHH
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG--TERVLRQ 134 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~g--dd~~veQ 134 (349)
.-|.|-+.=.|+||++.+|+.+|.+.|+||.++.++..+..+ +|.|.+++ +++.+++
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 457888888999999999999999999999999999877555 47777774 4554543
No 83
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.15 E-value=0.0044 Score=46.09 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=29.6
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.+.+.+.|+||.|++++.+|+.+|+||+++..
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~ 34 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLV 34 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEE
Confidence 57889999999999999999999999999863
No 84
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.15 E-value=0.0041 Score=62.76 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=33.9
Q ss_pred ccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 311 ~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
-..++.|++.|+|+||||++|+++|+++|+||+|+..
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q 381 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQ 381 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEe
Confidence 3467999999999999999999999999999999864
No 85
>PRK07334 threonine dehydratase; Provisional
Probab=96.11 E-value=0.028 Score=56.16 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=51.8
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC---CCc--EEEEEEe-CChHHHHHHHHHHhcC
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVS-GTERVLRQVVEQLNKL 142 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te---d~g--iiTIVV~-gdd~~veQLiKQL~KL 142 (349)
...|.|.+.|+||+|.+|+.+++..++||.++...... ..+ .+.+++. .+.+.+++++++|++.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999986431 223 3555444 3778899999999885
No 86
>PRK11899 prephenate dehydratase; Provisional
Probab=96.09 E-value=0.026 Score=54.75 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=52.0
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHHhcCee
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN 144 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g-i-iTIVV~g--dd~~veQLiKQL~KLiD 144 (349)
+..|.+.+.|+||.|.+|.+.|++||+|+.+|.--|+.+. + + |=|-+.| ++..+++.+++|.+.-.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~ 264 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSE 264 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 6677778899999999999999999999999999988654 3 2 4444554 46667888888877554
No 87
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.07 E-value=0.026 Score=45.19 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=48.3
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEE-EeC----ChHHHHHHHHHHhcC
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIV-VSG----TERVLRQVVEQLNKL 142 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIV-V~g----dd~~veQLiKQL~KL 142 (349)
..|.|...|+||.|.+|+..|++.|++|.+-.++-..+... +=|. .+| ++...+.|.+.|...
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999887665543 4443 223 556677777777543
No 88
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.06 E-value=0.0041 Score=45.00 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=28.7
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
++.+.+.|+||.|++++++|+..|.||.++.
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~ 31 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMY 31 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheE
Confidence 3788999999999999999999999999875
No 89
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=96.02 E-value=0.0083 Score=55.28 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=50.4
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc----EEEE--EEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA----LFTI--VVS-GTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g----iiTI--VV~-gdd~~veQLiKQL~KLiDVikV~ 149 (349)
.-+.+.+-+.||||+++++|.+|.++|+||++|..-....++ .+.+ .+. ...-.+.+|..+++.|-|=+.|+
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v~ 169 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNVD 169 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcce
Confidence 457899999999999999999999999999999987544443 2322 222 12233666666666655544443
No 90
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.02 E-value=0.11 Score=50.56 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=37.1
Q ss_pred ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeee
Q 018896 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG 113 (349)
Q Consensus 74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg 113 (349)
+++|.++.|++.-.|+||+.++||++++++|.||..++..
T Consensus 4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 3468888999999999999999999999999999999986
No 91
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.99 E-value=0.01 Score=61.55 Aligned_cols=72 Identities=17% Similarity=0.359 Sum_probs=57.1
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
.-|+|-+.-.|+||++.+|+.++.+.++||.++.++..+..+. |.|.++ +..-+.++++|.++.+|.+|..+
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence 3467777778999999999999999999999999998776654 444454 44456777888888888888754
No 92
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.96 E-value=0.023 Score=55.82 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=52.9
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCee
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVN 144 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLiD 144 (349)
.-|.+.|.+.|+||.|.+|+.++.+.|+||+.+.+-++.+. |.++|.+. +++..++..+.|.+-..
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 356 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK-NEEDRERAKALLEEFWT 356 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC-CHHHHHHHHHHHHhcCc
Confidence 35899999999999999999999999999999999876544 56888887 44556666666655443
No 93
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.95 E-value=0.0067 Score=45.09 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=30.2
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+.+++.+.|+||.|++++++|+..|.||+++..
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~ 34 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEI 34 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEe
Confidence 468899999999999999999999999998854
No 94
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.89 E-value=0.021 Score=55.38 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=46.3
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHHhc
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK 141 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd--~~veQLiKQL~K 141 (349)
+|++.-.|+||+.++||++++++|.||..++.....+.++ |++.++.++ ...+++...|+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 6899999999999999999999999999999887766666 555666432 234555544433
No 95
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.86 E-value=0.041 Score=59.74 Aligned_cols=74 Identities=27% Similarity=0.342 Sum_probs=62.2
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
..-...|.|...|++|+|+.|+.++++-+.||.+++..... +... |+|.|+ +-..+.+|+.||..+-+|..|..
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-NLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-cHHHHHHHHHHHhcCCCeEEEEe
Confidence 34567899999999999999999999999999999988762 2222 455555 78889999999999999999874
No 96
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.84 E-value=0.046 Score=53.81 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=51.2
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeee---ecCCCc--EEEEEEeC-ChHHHHHHHHHHhcC
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG---LNVDKA--LFTIVVSG-TERVLRQVVEQLNKL 142 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg---~Ted~g--iiTIVV~g-dd~~veQLiKQL~KL 142 (349)
-+..+|++.+.|+||.|.+++.++++.|.||.++... .....+ .++|.++. +....++|++.|++.
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 3567999999999999999999999999999999766 222223 36777663 456678888888654
No 97
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=95.78 E-value=0.0075 Score=43.16 Aligned_cols=31 Identities=26% Similarity=0.522 Sum_probs=28.9
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
|.+.+.|+||+|+.|+.+|+.+|.||.++.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~ 32 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQV 32 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEE
Confidence 6789999999999999999999999999865
No 98
>PRK00194 hypothetical protein; Validated
Probab=95.71 E-value=0.0072 Score=47.61 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred eeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+++|++.-.|+||++++|+++++.+|.||..+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~ 35 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDIS 35 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehh
Confidence 789999999999999999999999999998865
No 99
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.69 E-value=0.0072 Score=47.74 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=30.8
Q ss_pred eeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+++|++.-.|+||++++|+++|+.+|.||..+.
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~ 33 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDIS 33 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEech
Confidence 478999999999999999999999999999875
No 100
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.66 E-value=0.011 Score=45.87 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=29.6
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
..|.+.+.|+||.|++|...|+..|.||.+|.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~ 33 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIE 33 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEE
Confidence 57888999999999999999999999999885
No 101
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=95.65 E-value=0.054 Score=53.09 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=56.6
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-c--EEEE--EEeCChHHHHHHHHHHhcCeeeeEE
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTI--VVSGTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g--iiTI--VV~gdd~~veQLiKQL~KLiDVikV 148 (349)
.+..|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... + +|-| .-+.++..+++.++.|.++-..+++
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki 268 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI 268 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence 57888999999999999999999999999999999888754 3 2333 3445666788888888877765555
No 102
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.63 E-value=0.063 Score=40.63 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=45.9
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHHhc
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNK 141 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~-gdd~~veQLiKQL~K 141 (349)
+++.+.++||.|.+++.+++. |.||..+.-.... +.+.+.+++. .+.+.+++++.+|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999 9999999876543 2334666655 345678888888865
No 103
>PRK06382 threonine dehydratase; Provisional
Probab=95.60 E-value=0.05 Score=54.48 Aligned_cols=65 Identities=23% Similarity=0.247 Sum_probs=50.3
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeee----ecCC-CcEEEEEEeCC-hHHHHHHHHHHhcC
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVD-KALFTIVVSGT-ERVLRQVVEQLNKL 142 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg----~Ted-~giiTIVV~gd-d~~veQLiKQL~KL 142 (349)
++..|.|.+.|+||.|.+|+.+|.+.|.||.++... +.+. ...+++.++.. .+..++|++.|++.
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999999999999875 3322 23477777643 34456888888653
No 104
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.57 E-value=0.44 Score=43.75 Aligned_cols=137 Identities=21% Similarity=0.244 Sum_probs=94.3
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-E--EEEEEeCC-hHHHHHHHHHHh-cCeeeeEEEe
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGT-ERVLRQVVEQLN-KLVNVIKVED 150 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-i--iTIVV~gd-d~~veQLiKQL~-KLiDVikV~d 150 (349)
-+|+-++.|-.+|+||-|-++..=++.-|-||-++.=...+..+ + +.|++.+| +.....+.+-++ .=+.++++..
T Consensus 2 ~~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg 81 (170)
T COG2061 2 FQMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDG 81 (170)
T ss_pred cceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecC
Confidence 36889999999999999999999999999999988766554433 3 77777766 555666666663 2355555542
Q ss_pred cCCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEec--------CCE--EEEEEeCChhHHHHHHHHhcc
Q 018896 151 ISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--------EHA--LTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 151 lt~~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs--------~~s--ltIEvTG~~~KIdafi~~L~~ 215 (349)
..- ..+-...||-=-++..-+.-|-.+-.+=+|.++|.+ +.+ ++|+.. +.+|++..++.|+.
T Consensus 82 ~~~--~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~-~~e~l~ea~~~l~e 153 (170)
T COG2061 82 ARL--REKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAV-GKEKLDEALRRLKE 153 (170)
T ss_pred cCc--ceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEc-ChhHHHHHHHHHHH
Confidence 221 223334555444555567778888889999999984 233 455554 45777777777654
No 105
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.45 E-value=0.012 Score=45.22 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=29.1
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.+.+.+.|+||+|++|+|.|+..|.||.|..+
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i 34 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEI 34 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEE
Confidence 47789999999999999999999999988754
No 106
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.43 E-value=0.011 Score=42.56 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.3
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+|.+.+.|+||+|++++.+|+..|.||.++.+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~ 32 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRV 32 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEE
Confidence 47889999999999999999999999998854
No 107
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.37 E-value=0.18 Score=50.01 Aligned_cols=129 Identities=17% Similarity=0.225 Sum_probs=88.6
Q ss_pred EEEEEEE---EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896 79 RHTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (349)
Q Consensus 79 ~htISIl---VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~ 155 (349)
...|++. +.|+||++.||...|.+.|+||+.++.+.++ .-++++++. +..+++++.|++...-.... .=
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~i 331 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLD----RV 331 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----eE
Confidence 3467777 7899999999999999999999999876544 347888853 23555555555543211111 11
Q ss_pred hhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 156 HVERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 156 ~V~RELaLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.+.+.+++|-|-... ..-..+++.....+.+|.-++....-+-+.=+.+..+..++.|.+
T Consensus 332 ~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh~ 396 (401)
T TIGR00656 332 EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHE 396 (401)
T ss_pred EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHH
Confidence 266788888885432 234578888888888998887666666666667777777777764
No 108
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=95.36 E-value=0.048 Score=39.72 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=37.8
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHHhc
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~gdd~~veQLiKQL~K 141 (349)
+.++||++.+|...+++.|+||+.+..+...+. ..+++++.. ...+++.+.|++
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~ 63 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK 63 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence 578999999999999999999998876644432 347777763 223444444433
No 109
>PRK12483 threonine dehydratase; Reviewed
Probab=95.29 E-value=0.44 Score=50.11 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=91.8
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEe--CChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~--gdd~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
+++.+++..-++||.|.+++.++..+ ||..+.--.... ...+.+.++ +.+...++|++.|++.= .++.++++.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn 419 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD 419 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence 67899999999999999999999988 999887654222 233555544 33443489999997643 477788886
Q ss_pred hh---------------hhhheeeEEEeCCCCCHHHHHHHHHhcCc--EEEEec-----CCE----EEEEEeCChhHHHH
Q 018896 155 PH---------------VERELMLIKLNGDTSTWPEIMWLVDIFRA--KVVDIS-----EHA----LTIEVTGDPGKMVA 208 (349)
Q Consensus 155 ~~---------------V~RELaLIKV~~~~~~R~EI~~la~iFrA--kIVDvs-----~~s----ltIEvTG~~~KIda 208 (349)
+. +.|| +|+.|..+ |.....++.++.++- .|-..+ .+. +=|++. .++.+.
T Consensus 420 e~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~~ 495 (521)
T PRK12483 420 ELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERAA 495 (521)
T ss_pred HHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHHH
Confidence 65 3454 57788776 677788888888876 333321 111 236763 377789
Q ss_pred HHHHhccCC
Q 018896 209 VQRNLSKFG 217 (349)
Q Consensus 209 fi~~L~~fG 217 (349)
|++.|+..|
T Consensus 496 ~~~~l~~~g 504 (521)
T PRK12483 496 LDAALAALG 504 (521)
T ss_pred HHHHHHHCC
Confidence 999998755
No 110
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.22 E-value=0.014 Score=44.50 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=29.3
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+|++...|+||.+++|+.+|+.+|-||.++..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~ 32 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLST 32 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEe
Confidence 37889999999999999999999999998864
No 111
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.17 E-value=0.09 Score=36.64 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=37.3
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEeCChHHHHHHHHH
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQ 138 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~gdd~~veQLiKQ 138 (349)
+.|.||++.++...|.+.|+||+.++.+...+. ..++++++. +..++.++.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~--~~~~~~~~~ 59 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK--SDLEKALAI 59 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH--HHHHHHHHH
Confidence 578999999999999999999999988764432 236777753 334444443
No 112
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.17 E-value=0.016 Score=43.80 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=28.8
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+++.+.|+||.|+.++.+++..|.||.|+..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~ 32 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILT 32 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEe
Confidence 6889999999999999999999999998854
No 113
>PRK11898 prephenate dehydratase; Provisional
Probab=95.09 E-value=0.12 Score=49.88 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=49.8
Q ss_pred EEEEEEEEcCc-ccHHHHHHHHHhccCcceeeEeeeecCCCc--E---EEEEEeCChHHHHHHHHHHhcCee
Q 018896 79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKA--L---FTIVVSGTERVLRQVVEQLNKLVN 144 (349)
Q Consensus 79 ~htISIlVeNk-PGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i---iTIVV~gdd~~veQLiKQL~KLiD 144 (349)
+..|.+.+.|+ ||.|.++.+.|+++|+|+..|.--|..... + +.+..+.++..++++++.|++...
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 56677777665 999999999999999999999988876442 2 333334455578888888887654
No 114
>PRK08198 threonine dehydratase; Provisional
Probab=95.09 E-value=0.12 Score=51.28 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=51.9
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC---CCc--EEEEEEeC-ChHHHHHHHHHHhcC
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVSG-TERVLRQVVEQLNKL 142 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te---d~g--iiTIVV~g-dd~~veQLiKQL~KL 142 (349)
-+..++++.+.|+||.|.++..+++..|.||.+++..+.. ..+ .++|+++. +.+.+++|++.|++.
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 3557999999999999999999999999999999987532 123 36666653 455788888888664
No 115
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.08 E-value=0.11 Score=40.66 Aligned_cols=56 Identities=16% Similarity=0.365 Sum_probs=44.0
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHHhcCeee
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNV 145 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd-----~~veQLiKQL~KLiDV 145 (349)
..+.||++.+|.+.|++.|+|++-++.+. .-+.+++..++ +.+++|++.|+++-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v 71 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV 71 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence 46789999999999999999999997522 44777777443 3788999999985444
No 116
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.00 E-value=0.018 Score=42.50 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=27.8
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+-+.+.|+||+|++|+.+|+.+|.||.++.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~ 32 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQV 32 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEe
Confidence 4568899999999999999999999998764
No 117
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=94.81 E-value=0.11 Score=52.53 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=51.8
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeC--ChHHHHHHHHHHhcCee
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSG--TERVLRQVVEQLNKLVN 144 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~g--dd~~veQLiKQL~KLiD 144 (349)
+..|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.... + |=|-+.| ++..+++.+++|++.-.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~ 367 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR 367 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 66677778999999999999999999999999998877653 2 4444444 45668888888877654
No 118
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.80 E-value=0.025 Score=45.32 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=47.0
Q ss_pred EEEEEEcC-cccHHHHHHHHHhccCcceeeEeeeecCC---------Cc-EEEEEEeCChHHHHHHHHHHhcCe
Q 018896 81 TISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVD---------KA-LFTIVVSGTERVLRQVVEQLNKLV 143 (349)
Q Consensus 81 tISIlVeN-kPGVL~RItGLFsRRGyNIeSLtVg~Ted---------~g-iiTIVV~gdd~~veQLiKQL~KLi 143 (349)
.++++-.+ ++|.+.+|+.+++.+|+||+.+.-- +.. +- .|.+.+++.+...+.+.++|.++-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la 73 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA 73 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 36788889 9999999999999999999988763 211 11 366677777667777887776553
No 119
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.75 E-value=0.023 Score=36.87 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=28.0
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
|++...|+||++.++.+.|+++|.||+++..
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~ 31 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQ 31 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEe
Confidence 4678889999999999999999999998865
No 120
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=94.75 E-value=0.029 Score=40.86 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=29.5
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.|.+.+.|+||+|+.++++|+..|.||.++.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~ 33 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARI 33 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEE
Confidence 57899999999999999999999999998764
No 121
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.64 E-value=0.1 Score=52.55 Aligned_cols=52 Identities=25% Similarity=0.391 Sum_probs=41.3
Q ss_pred eEEEEEEEEc-CcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEeCCh
Q 018896 78 KRHTISVFVG-DESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTE 129 (349)
Q Consensus 78 ~~htISIlVe-NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~gdd 129 (349)
.-+.|.+.+. |+||+|.+|+.+|+++|+||.+|....+....+ +.|-+.+.+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~~ 347 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPGS 347 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEeccc
Confidence 3578999995 999999999999999999999999955554433 666666433
No 122
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.48 E-value=0.04 Score=42.16 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.6
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.+.+.-.|+||.|++|+|.|++.|.||.+-.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i 34 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARI 34 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEE
Confidence 57788899999999999999999999988543
No 123
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.38 E-value=0.039 Score=40.32 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=29.8
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+-|.+.+.|+||+|++++.+|+..|.||+++..
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~ 33 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQ 33 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEE
Confidence 358899999999999999999999999998753
No 124
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.36 E-value=0.039 Score=39.87 Aligned_cols=32 Identities=41% Similarity=0.662 Sum_probs=28.7
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.|.+.+.|+||+|++++.+|+..+.||.++..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~ 33 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQ 33 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEE
Confidence 47788999999999999999999999988753
No 125
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.35 E-value=0.22 Score=39.09 Aligned_cols=56 Identities=13% Similarity=0.392 Sum_probs=42.1
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH----HHH-HHHHHHhcCeee
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER----VLR-QVVEQLNKLVNV 145 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~----~ve-QLiKQL~KLiDV 145 (349)
+.+.||.+.+|...|++.|+||+-++.+. .-+.+++..++. .+. .|.+-|+|+-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 57889999999999999999999997522 447777775542 354 577778884443
No 126
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=94.29 E-value=0.3 Score=37.67 Aligned_cols=52 Identities=15% Similarity=0.425 Sum_probs=42.5
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHHhc
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNK 141 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd-----~~veQLiKQL~K 141 (349)
..+.||++.||...|++.|+|++.++. ....+++++..++ ..++.|.+-|+|
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~----s~~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLIST----SEVSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEc----CCcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 567899999999999999999998863 2245788887544 478899999998
No 127
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.15 E-value=0.26 Score=39.09 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=51.5
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEeC-C-hHHHHHHHHHHhcCeeeeEEEecCCchh
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG-T-ERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~g-d-d~~veQLiKQL~KLiDVikV~dlt~~~~ 156 (349)
..+.+.+.++||-|.+++.+++ +-||..+.-.... +.+.+.++++. + .+.++++++.|++.= .++.++++.+.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~ 77 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL 77 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence 4788999999999999999999 6688766655433 33445555542 3 566888888887643 24556666554
Q ss_pred h
Q 018896 157 V 157 (349)
Q Consensus 157 V 157 (349)
.
T Consensus 78 ~ 78 (85)
T cd04906 78 A 78 (85)
T ss_pred H
Confidence 4
No 128
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.15 E-value=0.16 Score=56.02 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=51.6
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC----ChHHHHHHHHHHhcCeee
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNV 145 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g----dd~~veQLiKQL~KLiDV 145 (349)
...+|.|+..|+||+|.+|+++|++.|+||.+-.+....+...=++.|.+ +++..+.|.+.|.+.++|
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 56799999999999999999999999999999888877333222333332 345677788788776654
No 129
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.07 E-value=0.035 Score=42.30 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=27.2
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+.+.+.|+||.|++|-..|+.+|.||-+|.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~ 31 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIE 31 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEE
Confidence 567788999999999999999999998873
No 130
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.06 E-value=0.033 Score=42.45 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=28.5
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+|++.-.|+||++++|++.++.+|.||..+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~ 31 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESD 31 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeee
Confidence 4788889999999999999999999999875
No 131
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.06 E-value=0.049 Score=42.58 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.0
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+|++...|+||.|++++|.|++.|.||.+-.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I 33 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKV 33 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEE
Confidence 68899999999999999999999999987543
No 132
>PRK08577 hypothetical protein; Provisional
Probab=94.02 E-value=0.061 Score=46.20 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=32.3
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
..+.|.+.+.|+||+|+.|+.+|+..|.||.++.+
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~ 89 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATEC 89 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEE
Confidence 47899999999999999999999999999998754
No 133
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.96 E-value=0.052 Score=41.98 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=29.5
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.+|++.-.|+||.|++|+|.|++.|.||.+-.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i 33 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARA 33 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEE
Confidence 378999999999999999999999999987543
No 134
>PRK08210 aspartate kinase I; Reviewed
Probab=93.88 E-value=0.82 Score=45.61 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=79.0
Q ss_pred EEEEEEEEcCc-ccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhh
Q 018896 79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (349)
Q Consensus 79 ~htISIlVeNk-PGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V 157 (349)
...|+++-.|. ||.++||.+.|.+.|+||+.++... + -+++++.. ...+++.+.|+++- ..-.+
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~--~~~~~a~~~l~~~~---------~~v~~ 335 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD--EDSEKAKEILENLG---------LKPSV 335 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH--HHHHHHHHHHHHhC---------CcEEE
Confidence 34666666665 9999999999999999999997762 2 35555552 23455555555531 02236
Q ss_pred hhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 158 ERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 158 ~RELaLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.+.+++|.|-... ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.+
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh~ 398 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALHD 398 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHHH
Confidence 6788888886432 334467777777788888766444444444455556666666653
No 135
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.85 E-value=0.23 Score=55.14 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=49.1
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEE-e----CChHHHHHHHHHHhcCee
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-S----GTERVLRQVVEQLNKLVN 144 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV-~----gdd~~veQLiKQL~KLiD 144 (349)
.....|.|...|+||.|.+|+++|++.|+||.+..+.-..+... |.|.- + .++...+.|.+.|.+.++
T Consensus 841 ~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred CCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 34579999999999999999999999999999999984322222 33332 1 134456777777766553
No 136
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=93.83 E-value=0.24 Score=44.00 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=44.8
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-EEEEEEeCChHHHHHHHHHHhc
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-iiTIVV~gdd~~veQLiKQL~K 141 (349)
.-.+.|-++|+||-|+||+++|...++|++-+-+-.++... ++-+-++. ++..++.|++
T Consensus 69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed----~d~~~~aLed 128 (142)
T COG4747 69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED----IDRAIKALED 128 (142)
T ss_pred eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH----HHHHHHHHHH
Confidence 45889999999999999999999999999999988887743 33333443 3444555544
No 137
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=93.82 E-value=0.37 Score=50.00 Aligned_cols=65 Identities=15% Similarity=0.305 Sum_probs=51.8
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeCC-hHHHHHHHHHHhcCe
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNKLV 143 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~gd-d~~veQLiKQL~KLi 143 (349)
+..|.+.+.|+||.|.+|..+|+++|+|+..|.--++.... + +=|-+++. +..++++++.|.+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 56788888999999999999999999999999988865443 2 33445554 467888999888876
No 138
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.72 E-value=0.064 Score=39.58 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=29.4
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.|.+...|+||+|++++++|+..|.||.++.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~ 33 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKI 33 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEE
Confidence 57889999999999999999999999988764
No 139
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=93.52 E-value=0.094 Score=40.30 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=29.7
Q ss_pred eeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
...|.+...|+||+|+.|+..++..|-||.++.+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~ 39 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINA 39 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEE
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEe
Confidence 4789999999999999999999999999999875
No 140
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=93.50 E-value=0.27 Score=35.92 Aligned_cols=49 Identities=14% Similarity=0.399 Sum_probs=38.5
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHH
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL 139 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL 139 (349)
.++||...+|...|.+.|+|++.++.+. .-+++++..++ +.++.|++.|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence 4679999999999999999999996422 45788887655 6677777665
No 141
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.32 E-value=0.06 Score=38.76 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=27.7
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
|.+.+.|+||.|++|+..++..|.||.++..
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~ 31 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSH 31 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEE
Confidence 3578899999999999999999999998754
No 142
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.25 E-value=0.071 Score=39.89 Aligned_cols=32 Identities=38% Similarity=0.491 Sum_probs=29.3
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+|.+.+.|+||.|++|+..++..|.||.++..
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~ 32 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDL 32 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEE
Confidence 47899999999999999999999999998764
No 143
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=93.23 E-value=0.18 Score=42.24 Aligned_cols=46 Identities=30% Similarity=0.490 Sum_probs=38.1
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEE
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIV 124 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIV 124 (349)
|++..|+|.-.||||+.+.|+++|++.|.||.-++ .|--.+++|+.
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~ 46 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMI 46 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH--HHHHhhhceee
Confidence 57889999999999999999999999999998665 44445565553
No 144
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=93.17 E-value=0.38 Score=37.71 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=42.0
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--H-HHHHHHHHHhcCee
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--R-VLRQVVEQLNKLVN 144 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~-~veQLiKQL~KLiD 144 (349)
.-..||.+.+|.+.|++.|+|++-+..+. .-+++++..++ . .++.|++-|+|+-+
T Consensus 11 m~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~ 68 (73)
T cd04934 11 KSLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGT 68 (73)
T ss_pred CccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheE
Confidence 34579999999999999999999997522 44777776432 3 78888888888443
No 145
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=93.12 E-value=1.7 Score=45.07 Aligned_cols=128 Identities=20% Similarity=0.291 Sum_probs=91.9
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
.+.+.-.....+++|++.||.+.+++.|+|++-+..+.++.. +++++.+++ +..+.+.+....+.. .|+
T Consensus 308 ~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~--~v~----- 378 (447)
T COG0527 308 ALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA--EVE----- 378 (447)
T ss_pred EEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc--eEE-----
Confidence 344444555566679999999999999999999988776665 888887544 333344443333333 232
Q ss_pred hhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 155 PHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 155 ~~V~RELaLIKV~~~-----~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
+++.+++|-+--. +.--+++++-...++-+|.-++...+-|-+.=+.+..+..++.|..
T Consensus 379 --~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH~ 442 (447)
T COG0527 379 --VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALHE 442 (447)
T ss_pred --eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHHH
Confidence 6778888887533 2345688888899999999999777778777788888888877754
No 146
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.05 E-value=0.082 Score=36.27 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=27.9
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
|.+.+.|+||++++++-+|+..++||.++.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~ 31 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNT 31 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEe
Confidence 4678999999999999999999999998754
No 147
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=93.05 E-value=0.47 Score=49.59 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=57.8
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--c-E-EEEEEeCChHHHHHHHHHHhcCeeeeEEE
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--A-L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--g-i-iTIVV~gdd~~veQLiKQL~KLiDVikV~ 149 (349)
..+-.|.+.+.|+||.|.+|..+|+.+|+|+..|.--++... . + +=|-+.+....++++++.|.+..+.+.|.
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~ 105 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS 105 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence 345567777799999999999999999999999988876543 2 3 34456677778999999999988876664
No 148
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=93.05 E-value=0.051 Score=39.90 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=26.6
Q ss_pred EEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 318 SMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 318 s~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
-+.-+|+||+|++|+.++++.|.||.++.+
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~ 32 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYL 32 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhc
Confidence 457799999999999999999999987654
No 149
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.04 E-value=0.26 Score=53.84 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=38.0
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeC
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG 127 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~g 127 (349)
..|.|+..|+||.+++|+++|++.|+||.+-.+.- ..|. .++.|.+
T Consensus 600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~ 647 (774)
T PRK03381 600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSP 647 (774)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEEC
Confidence 48999999999999999999999999999998874 3343 4555553
No 150
>PRK07431 aspartate kinase; Provisional
Probab=92.85 E-value=1.1 Score=46.95 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=81.8
Q ss_pred EEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheee
Q 018896 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELML 163 (349)
Q Consensus 85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaL 163 (349)
-+.++||.++||.+.|.+.|+||+.++.+..+.. .-+.++++.++ +++..+.|+++.+=+.. .+-.+.+++++
T Consensus 277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~ 350 (587)
T PRK07431 277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAK 350 (587)
T ss_pred cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEE
Confidence 3568899999999999999999999987765543 23667776432 33333333332210000 12226678999
Q ss_pred EEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 164 IKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 164 IKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
|.|--.. .--..++.....++.+|.-++....-|-+.=+.+..+..++.|.+
T Consensus 351 IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~ 407 (587)
T PRK07431 351 LSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCE 407 (587)
T ss_pred EEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHH
Confidence 9886543 234477888888888898887665555555566667777777765
No 151
>PLN02550 threonine dehydratase
Probab=92.76 E-value=3.3 Score=44.54 Aligned_cols=134 Identities=17% Similarity=0.304 Sum_probs=93.1
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
.+++.+.+.+-++||.|.+++.++..+ ||..+.--.... .+.+.+.+. .+.+.+++|+..|++.= .++.||++.
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~ 490 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN 490 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence 466889999999999999999999987 999887766322 233555544 36677999999998754 588888886
Q ss_pred hhh--------------hhheeeEEEeCCCCCHHHHHHHHHhcCcE--EEEe----c--CC---EEEEEEeCChhHHHHH
Q 018896 155 PHV--------------ERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI----S--EH---ALTIEVTGDPGKMVAV 209 (349)
Q Consensus 155 ~~V--------------~RELaLIKV~~~~~~R~EI~~la~iFrAk--IVDv----s--~~---sltIEvTG~~~KIdaf 209 (349)
+.. .|| +|+.+..+ +.....++.++.++.+ |... + .. -+=||+. +++++.|
T Consensus 491 ~~~~~~LR~v~g~ra~~~~E-~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l 566 (591)
T PLN02550 491 DLVKDHLRYLMGGRAIVKDE-LLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEF 566 (591)
T ss_pred hHHhhhhhheeccccccCce-EEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHH
Confidence 654 222 36677665 5666778888877763 3221 1 11 1336775 4888889
Q ss_pred HHHhccCCc
Q 018896 210 QRNLSKFGI 218 (349)
Q Consensus 210 i~~L~~fGI 218 (349)
++.|+..|.
T Consensus 567 ~~~l~~~gy 575 (591)
T PLN02550 567 KSRANALGY 575 (591)
T ss_pred HHHHHHcCC
Confidence 999887663
No 152
>PLN02317 arogenate dehydratase
Probab=92.74 E-value=0.53 Score=48.08 Aligned_cols=66 Identities=14% Similarity=0.298 Sum_probs=48.9
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC----------------cE-EEEEEeC--ChHHHHHHHHHH
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK----------------AL-FTIVVSG--TERVLRQVVEQL 139 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~----------------gi-iTIVV~g--dd~~veQLiKQL 139 (349)
+..|.+.++|+||.|.++...|+.||+|+..|.--|.... .+ |=|-+++ .+..+++.++.|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 5667777799999999999999999999999988775443 12 3333444 356678888887
Q ss_pred hcCee
Q 018896 140 NKLVN 144 (349)
Q Consensus 140 ~KLiD 144 (349)
.+...
T Consensus 363 ~~~~~ 367 (382)
T PLN02317 363 QEFAT 367 (382)
T ss_pred HHhcC
Confidence 77554
No 153
>PRK07431 aspartate kinase; Provisional
Probab=92.70 E-value=1.5 Score=46.06 Aligned_cols=124 Identities=13% Similarity=0.190 Sum_probs=89.6
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcE--EEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhhhhhe
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVEREL 161 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~gi--iTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V~REL 161 (349)
+.++||.++++.++|.++|+||+.++.....+ .+. ++++++.++ ..+..++++|.+..+...++ +++.+
T Consensus 447 ~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i~-------~~~~v 519 (587)
T PRK07431 447 VPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEVE-------DGPAI 519 (587)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceEE-------EeCCe
Confidence 45789999999999999999999998764333 233 667776332 33455566665544444333 66788
Q ss_pred eeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-C
Q 018896 162 MLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-F 216 (349)
Q Consensus 162 aLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~-f 216 (349)
++|.|--.. .--..+++.....+.+|.-++...+-|-+.=+.+..+..++.|.. |
T Consensus 520 a~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~vV~~~~~~~av~~Lh~~f 580 (587)
T PRK07431 520 AKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVKALQAVHQAF 580 (587)
T ss_pred EEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceEEEEEEeHHHHHHHHHHHHHHh
Confidence 988885432 334478888889999999999888888887788888888887764 5
No 154
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.67 E-value=0.066 Score=41.16 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=27.7
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+++.=.++||++++|+..|+.+|-||..+.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~ 31 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVG 31 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecc
Confidence 678889999999999999999999999884
No 155
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=92.61 E-value=0.84 Score=32.39 Aligned_cols=50 Identities=16% Similarity=0.328 Sum_probs=36.4
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
..+.||++.|+.+.+++.|+|++.++.. +..+++++.. ...+++.+-|+|
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~--~d~~~~~~~l~~ 59 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDE--DDAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeH--HHHHHHHHHHHH
Confidence 4577999999999999999999999832 2457888873 223444444444
No 156
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=92.56 E-value=0.38 Score=44.23 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=57.9
Q ss_pred CceEEEEEEEE--cCcccHHHHHHHHHhccCcceeeEeeeec--CCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 76 KVKRHTISVFV--GDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 76 ~m~~htISIlV--eNkPGVL~RItGLFsRRGyNIeSLtVg~T--ed~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
.|-.+.|.++. .++||+|..|+++.+.||++|..+-.... .++..+||++++ ..-..++.||.|+--|.+|.-
T Consensus 90 ~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 90 LLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred hcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEEe
Confidence 46677888887 46899999999999999999998877744 344579999863 334558899999999988863
No 157
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.42 E-value=0.14 Score=40.38 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=28.0
Q ss_pred eEEEEEEeCCCchhhhhhhhhccccccccee
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
+.|.+...|+||.+++++|.|++.|.||.+-
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A 32 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEA 32 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEE
Confidence 4677888999999999999999999999874
No 158
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.81 E-value=1.9 Score=43.70 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=75.4
Q ss_pred ccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc---CeeeeEEEecCCchhhhhheeeEEE
Q 018896 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK---LVNVIKVEDISNEPHVERELMLIKL 166 (349)
Q Consensus 90 PGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K---LiDVikV~dlt~~~~V~RELaLIKV 166 (349)
+|++.||...|++.|+||+.++.+.++ .-+.++++.++ .+...+.|.+ ...+..|. +.+.+++|.|
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I~-------~~~~~a~Vsv 383 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSVE-------VEKGLAKVSL 383 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceEE-------EcCCeEEEEE
Confidence 899999999999999999999744332 23777776433 3333333332 33343343 6678899998
Q ss_pred eCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 167 NGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 167 ~~~-----~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
-.. +.--.+|++.....+-+|.-++....-|-++=+.+..+..++.|.+
T Consensus 384 vG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh~ 437 (441)
T TIGR00657 384 VGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLHN 437 (441)
T ss_pred EcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHHH
Confidence 432 3445688888888888887775443444455455666666776653
No 159
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=91.64 E-value=0.85 Score=50.08 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=49.2
Q ss_pred cCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-C---ChHHHHHHHHHHh
Q 018896 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G---TERVLRQVVEQLN 140 (349)
Q Consensus 75 ~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-g---dd~~veQLiKQL~ 140 (349)
.......+.|...|+||.|.+|+.+|+..|+||.+..+....+... |-+.-. | +++..+.|.++|.
T Consensus 775 ~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~ 846 (850)
T TIGR01693 775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLA 846 (850)
T ss_pred CCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999987655443 444321 1 2355666666664
No 160
>PRK09034 aspartate kinase; Reviewed
Probab=91.60 E-value=3.2 Score=42.61 Aligned_cols=118 Identities=12% Similarity=0.204 Sum_probs=75.0
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH--HH-HHHHHHHhcCeeeeEEEecCCchhhhhheee
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VL-RQVVEQLNKLVNVIKVEDISNEPHVERELML 163 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~--~v-eQLiKQL~KLiDVikV~dlt~~~~V~RELaL 163 (349)
..+||++.||.+.|++.|+||+-++ ....-++++++.++. .. ..+.+.|++-..+..|. +.+.+++
T Consensus 319 ~~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~-------~~~~va~ 387 (454)
T PRK09034 319 NREVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELE-------IEHDLAI 387 (454)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEE-------EeCCEEE
Confidence 3479999999999999999999983 222347888875432 11 55666666544443343 6778999
Q ss_pred EEEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 018896 164 IKLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 164 IKV~~~-----~~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
|.|--. +..-..+++.....+.+|.-++ ....-|-++=+.+..+..++.|..
T Consensus 388 VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~ 446 (454)
T PRK09034 388 IMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYN 446 (454)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHH
Confidence 999422 2345578888888888885443 222333333344555555666553
No 161
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=91.33 E-value=0.47 Score=39.87 Aligned_cols=65 Identities=18% Similarity=0.388 Sum_probs=52.5
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCc-E----EEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-i----iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+-|..|..|.++-...|..+.+++.++....+ + ++|.+.|+-..+-..+++|+++..++.|++++
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~ 120 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS 120 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 45789999999999999999999999655443 2 78889999999999999999999999999876
No 162
>PRK04435 hypothetical protein; Provisional
Probab=91.29 E-value=0.25 Score=43.50 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=35.2
Q ss_pred CCccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 309 ~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
...-+..+|.+.+.|+||+|+.|...+++.|-||.++..
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q 102 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQ 102 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEE
Confidence 456688999999999999999999999999999998754
No 163
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=91.25 E-value=0.65 Score=51.63 Aligned_cols=66 Identities=8% Similarity=0.241 Sum_probs=48.8
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe---C----ChHHHHHHHHHHhcCe
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS---G----TERVLRQVVEQLNKLV 143 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~---g----dd~~veQLiKQL~KLi 143 (349)
....|.|+..|+||.|.+|+++|++.|+||.+-.+..+.+...=++.|. | ++...++|.+.|.+.+
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999987744333233332 2 2345666777765544
No 164
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.99 E-value=0.82 Score=36.62 Aligned_cols=40 Identities=10% Similarity=0.326 Sum_probs=32.0
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd 129 (349)
..++||++.+|...|++.|+||+-++.++ .-+.+++..++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd 50 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSK 50 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhh
Confidence 46789999999999999999999997522 44777777544
No 165
>PRK03381 PII uridylyl-transferase; Provisional
Probab=90.94 E-value=0.88 Score=49.82 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=37.9
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL 120 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi 120 (349)
...+|.|...|+||+|.+|+++|+..|+||.+..+....+...
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~ 748 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVV 748 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEE
Confidence 4589999999999999999999999999999999987744433
No 166
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.93 E-value=0.22 Score=37.16 Aligned_cols=32 Identities=38% Similarity=0.549 Sum_probs=29.5
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.|.+...|+||+|++|+..+++.|.||..+..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~ 33 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQ 33 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEe
Confidence 57899999999999999999999999998853
No 167
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=90.88 E-value=1.5 Score=30.62 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=36.5
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
..+++|++.++...|++.++++..++.+..+ ..++++++. ...+.+.+.|+|
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~--~~i~~~v~~--~~~~~~~~~l~~ 61 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSSE--VNISFVVDE--DDADKAVKALHE 61 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc--eeEEEEEeH--HHHHHHHHHHHH
Confidence 4478999999999999999999998875522 336666763 334444555544
No 168
>PRK05092 PII uridylyl-transferase; Provisional
Probab=90.86 E-value=0.83 Score=50.82 Aligned_cols=63 Identities=27% Similarity=0.391 Sum_probs=48.0
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-EEEEEE---eC----ChHHHHHHHHHHhc
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVV---SG----TERVLRQVVEQLNK 141 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-iiTIVV---~g----dd~~veQLiKQL~K 141 (349)
...|.|+..|+||++.+|+++|++.|+||.+-.+..+.+.- +-++.| +| ++...+.|.+.|.+
T Consensus 732 ~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~ 802 (931)
T PRK05092 732 VTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIED 802 (931)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999988765543 345555 23 33456666666654
No 169
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=90.82 E-value=0.98 Score=34.81 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=42.8
Q ss_pred eEEEeCC--CCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc
Q 018896 163 LIKLNGD--TSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI 218 (349)
Q Consensus 163 LIKV~~~--~~~R~EI~~la~iFrAkI------VDv----s~~sltIEvTG~~~KIdafi~~L~~fGI 218 (349)
++|+... ....+-|.++++.|+..+ ||- .-..+++|+.|++++++++++.|+..|+
T Consensus 4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 5566543 456778999999987655 333 4567999999999999999999999984
No 170
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=90.70 E-value=0.26 Score=37.67 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=29.6
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.|.+...|++|+|+.|+.+++..|.||.++.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~ 33 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEI 33 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEE
Confidence 47889999999999999999999999998875
No 171
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=90.64 E-value=0.22 Score=38.77 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=29.3
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
-+|++.=.++||+.++|+++++.+|.||..+.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~ 33 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSR 33 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEce
Confidence 47888999999999999999999999998765
No 172
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.55 E-value=0.87 Score=33.22 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=37.2
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
.++||++.|+...|++.|+|++.++.+..+ ..+.+++..++ .+++++.|+|
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh~ 62 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIHT 62 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence 468999999999999999999999876633 45777787433 3444444443
No 173
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.40 E-value=1.2 Score=32.11 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=32.6
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g 127 (349)
+.+.||++.||...+++.|+|++.++.+.++ ..+++++..
T Consensus 11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~ 50 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHN 50 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH
Confidence 4578999999999999999999999876533 457788874
No 174
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=90.32 E-value=1 Score=49.53 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=37.5
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA 119 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g 119 (349)
....|.|+..|+||.|.+|++.|++.|+||.+-.+..|.+.-
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~ 708 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGV 708 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCE
Confidence 345899999999999999999999999999999998777653
No 175
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=90.20 E-value=0.96 Score=32.70 Aligned_cols=51 Identities=14% Similarity=0.293 Sum_probs=37.3
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
..+.||++.||...+++.|+|++.++.+..+ ..+++++..++ .++.++.|+
T Consensus 11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~~--~~~~~~~lh 61 (66)
T cd04922 11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDEDD--ATKALRAVH 61 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHH
Confidence 4578999999999999999999999875532 45788887432 344444443
No 176
>PRK05007 PII uridylyl-transferase; Provisional
Probab=90.04 E-value=0.96 Score=50.25 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=35.7
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD 117 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted 117 (349)
-..|.|+..|+||+|.+|+++|++.|+||.+..+..+.+
T Consensus 701 ~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~d 739 (884)
T PRK05007 701 GTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRD 739 (884)
T ss_pred eEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCC
Confidence 348999999999999999999999999999999877766
No 177
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=90.01 E-value=2.9 Score=40.03 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=58.6
Q ss_pred ceEEEEEEEEcCccc--HHHHHHHHHhccCcceeeEeeeecCCCc--EEEE--EEeC-ChHHHHHHHHHHhcCeeeeEEE
Q 018896 77 VKRHTISVFVGDESG--IINRIAGVFARRGYNIESLAVGLNVDKA--LFTI--VVSG-TERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 77 m~~htISIlVeNkPG--VL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTI--VV~g-dd~~veQLiKQL~KLiDVikV~ 149 (349)
...|.+++...++++ +..++...+...+|.+.++.+.+.++++ .++. ...+ ++..+++++.+|.....|.+|.
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 346788888888665 6999999999999999999998765544 3444 3443 6788999999999999999886
No 178
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=89.78 E-value=0.99 Score=34.32 Aligned_cols=46 Identities=28% Similarity=0.402 Sum_probs=32.2
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
+.||++.||+..++..|+||.-++ ++ .-+.+.|+.+ .+++.++-|+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is---S~--~~~~ilV~~~--~~~~A~~~L~ 64 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS---SE--ISISILVKEE--DLEKAVEALH 64 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE---ES--SEEEEEEEGG--GHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE---Ee--eeEEEEEeHH--HHHHHHHHhc
Confidence 599999999999999999998888 33 2356667633 3444444443
No 179
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.44 E-value=0.37 Score=39.53 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=31.4
Q ss_pred CccceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 310 ~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
.+-.+..|-+.+.|+||.|.++-..|+.+|.|+-+|.
T Consensus 10 ~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~Ie 46 (90)
T cd04931 10 NKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIE 46 (90)
T ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEE
Confidence 3344577888889999999999999999999998763
No 180
>PRK04374 PII uridylyl-transferase; Provisional
Probab=89.17 E-value=1.5 Score=48.83 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=48.1
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEE-eC---ChHHHHHHHHHHhcCe
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-SG---TERVLRQVVEQLNKLV 143 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV-~g---dd~~veQLiKQL~KLi 143 (349)
....+|.|...|+||+|.+|++.|++.|.||.+-.+....+... +.|.- +| ++...+.|.++|.+.+
T Consensus 794 ~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 794 GRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACL 866 (869)
T ss_pred CCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999988844333 33331 12 1222366666665443
No 181
>PRK08818 prephenate dehydrogenase; Provisional
Probab=88.98 E-value=0.3 Score=49.30 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=30.9
Q ss_pred eeEEEEEEe-CCCchhhhhhhhhcccccccceeee
Q 018896 314 SHTLSMLVN-NTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 314 ~~~ls~~V~-n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.+.|.+.|. |+||+|.+|.++|+.+|.||.+|..
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies 329 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS 329 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE
Confidence 588999995 9999999999999999999998764
No 182
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=88.94 E-value=1.4 Score=48.89 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=73.1
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe---C---ChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS---G---TERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~---g---dd~~veQLiKQL~KLiDVikV~dlt 152 (349)
..|.|+..|+||++.+|++.|++.|+||.+-.+..+.+.-. =++.|. | ++...++|.+.|.+.++-..
T Consensus 678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~----- 752 (854)
T PRK01759 678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK----- 752 (854)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC-----
Confidence 48999999999999999999999999999988866555432 244442 2 13345566666655443210
Q ss_pred CchhhhhheeeEEEeCCCCCHHHHHHHHHhc--CcEE---EEecCCEEEEEEeCC--hhHHHHHHHHhccCCc-EEEee
Q 018896 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIF--RAKV---VDISEHALTIEVTGD--PGKMVAVQRNLSKFGI-KELAR 223 (349)
Q Consensus 153 ~~~~V~RELaLIKV~~~~~~R~EI~~la~iF--rAkI---VDvs~~sltIEvTG~--~~KIdafi~~L~~fGI-lEiaR 223 (349)
+ ....+ +.++ + ...| ..+| -+.++++.+||+... |+=+-.+-+.|..+|| +..||
T Consensus 753 --~-~~~~~-----~~~~--~------~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~Ak 815 (854)
T PRK01759 753 --L-KKLNL-----EENH--K------LQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAK 815 (854)
T ss_pred --C-cchhc-----cccc--c------ccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEE
Confidence 0 00000 1011 0 0112 1222 124566777777765 7777777777887774 34444
No 183
>PRK09224 threonine dehydratase; Reviewed
Probab=88.89 E-value=15 Score=38.44 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=55.9
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEe--CChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~--gdd~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
-++..+++..-++||.|.+++.+++ +-||.-+.--... +.+.+.+.+. +.+..+++|++.|++.= .+++++++
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~ 401 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSD 401 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCC
Confidence 3578999999999999999999999 6899888765532 2234544444 33445889999997744 57778877
Q ss_pred chhh
Q 018896 154 EPHV 157 (349)
Q Consensus 154 ~~~V 157 (349)
.+..
T Consensus 402 ne~~ 405 (504)
T PRK09224 402 DELA 405 (504)
T ss_pred CHHH
Confidence 6543
No 184
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=88.89 E-value=3.5 Score=27.95 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=34.5
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHH
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiK 137 (349)
+.+|.+.|+...+++.++||+.++.+.. ...+++++..+ ..+++.+
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~~--~~~~~~~ 57 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDES--DLEKAVK 57 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeHH--HHHHHHH
Confidence 4799999999999999999999987764 23477777632 3444443
No 185
>PRK05007 PII uridylyl-transferase; Provisional
Probab=88.83 E-value=1.2 Score=49.44 Aligned_cols=67 Identities=15% Similarity=0.351 Sum_probs=49.4
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-C---ChHHHHHHHHHHhcC
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G---TERVLRQVVEQLNKL 142 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-g---dd~~veQLiKQL~KL 142 (349)
......|.|...|+||.|.+|+.+|.+.|+||.+-.+.--.+... |-|.-. | +++..+.|.++|...
T Consensus 805 s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~ 877 (884)
T PRK05007 805 TDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEA 877 (884)
T ss_pred CCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999988887555543 444332 2 234456666666443
No 186
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.79 E-value=1.3 Score=31.96 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=36.9
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
.+.||++.++...+++.|+||+-++.+..+ ..+++++..+ ..+++.+.|++
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~--~~~~~~~~Lh~ 62 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED--DGWAAVKAVHD 62 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH--HHHHHHHHHHH
Confidence 477999999999999999999999876533 4477777632 24444444444
No 187
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.72 E-value=0.46 Score=37.76 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=30.2
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.+|.+.-.|+||.|.+|+..|++-|.+|.+-.+
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkI 34 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYI 34 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEE
Confidence 578999999999999999999999999988654
No 188
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=88.60 E-value=0.38 Score=37.26 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=26.7
Q ss_pred EEEEEEeCCCchhhhhhhhhccccccccee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
+|.+.+.|+||.|.+|-..|+.+|.|+-.|
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~I 31 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHI 31 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEE
Confidence 466777999999999999999999998776
No 189
>PRK14434 acylphosphatase; Provisional
Probab=88.48 E-value=1.2 Score=36.67 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHhcC---cEEEEecCCEEEEEEeCCh-hHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR---AKVVDISEHALTIEVTGDP-GKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr---AkIVDvs~~sltIEvTG~~-~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+.++.|++.|++ ++|+.|++.|+.
T Consensus 16 GFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 16 GFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred eEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 45889999999999 9999999999999999998 699999999975
No 190
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.44 E-value=3.7 Score=29.05 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=30.8
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g 127 (349)
..+.||++.++...+++.|+|++.++.. ...+++++..
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~ 47 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDE 47 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeH
Confidence 4577999999999999999999999842 2447788763
No 191
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=88.27 E-value=1.6 Score=48.76 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=37.3
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEE
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVV 125 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV 125 (349)
.+|.|+..|+||.+.+|+|.|++.|+||.+-.+-.+.+.-. =++.|
T Consensus 705 t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V 751 (895)
T PRK00275 705 TQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIV 751 (895)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEE
Confidence 38999999999999999999999999999988866654322 24444
No 192
>PRK09084 aspartate kinase III; Validated
Probab=88.23 E-value=9.9 Score=39.11 Aligned_cols=114 Identities=15% Similarity=0.305 Sum_probs=74.6
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH-------HHHHHHHHHhcCeeeeEEEecCCchhhhhh
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-------VLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~-------~veQLiKQL~KLiDVikV~dlt~~~~V~RE 160 (349)
++||.++||...|++.|+||+-++.+ ..-++++++.++. ..+.+.+.|+++.. + .+.+.
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~ss----e~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~~~ 383 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTS----EVSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVEEG 383 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEecc----CcEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEECC
Confidence 68999999999999999999999843 2347788875442 22455555654221 2 25678
Q ss_pred eeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
+++|.|--.. .--+.++......+-.++..+.....|-+.=+.+..+..++.|.+
T Consensus 384 va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~ 443 (448)
T PRK09084 384 LALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALHQ 443 (448)
T ss_pred eEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHH
Confidence 9999996543 222345544444566777766666666665566666666766653
No 193
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=88.04 E-value=1.4 Score=43.67 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=90.8
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe--CChHHHHHHHHHHhcCeeeeE----
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS--GTERVLRQVVEQLNKLVNVIK---- 147 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~--gdd~~veQLiKQL~KLiDVik---- 147 (349)
.|+..+|.+--.++||+.++|++.+.++|.||....--...+.++ |++... +.+...+++...+..+.+=..
T Consensus 4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~ 83 (287)
T COG0788 4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR 83 (287)
T ss_pred CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence 356789999999999999999999999999999887773333454 666655 332345666655544333110
Q ss_pred ---------EE-ecCCchhhhhhee--------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHH
Q 018896 148 ---------VE-DISNEPHVERELM--------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209 (349)
Q Consensus 148 ---------V~-dlt~~~~V~RELa--------LIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdaf 209 (349)
|- -.+.+.+=-.+|+ =+.|.+--.+-.+...+++.|+----.+.-+.-+ .++.=+..
T Consensus 84 ~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~-----k~e~E~~~ 158 (287)
T COG0788 84 LHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN-----KAEAEARL 158 (287)
T ss_pred EeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc-----chHHHHHH
Confidence 00 1111211111111 0111111145567788888887655444332211 46677788
Q ss_pred HHHhccCCcEEEeeccceeeecCcCCCCccc
Q 018896 210 QRNLSKFGIKELARTGKIALRREKLGDTAPF 240 (349)
Q Consensus 210 i~~L~~fGIlEiaRTG~iAL~Rg~~~~~~~~ 240 (349)
+++++.||+ -.+-|+|=-+.++..|
T Consensus 159 ~~ll~~~~~------DlvVLARYMqILS~d~ 183 (287)
T COG0788 159 LELLEEYGA------DLVVLARYMQILSPDF 183 (287)
T ss_pred HHHHHHhCC------CEEeehhhHhhCCHHH
Confidence 899999982 2345777655555444
No 194
>PRK06291 aspartate kinase; Provisional
Probab=87.91 E-value=3.9 Score=42.02 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=74.6
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCee---eeEEEecCCchhhhhheeeE
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVN---VIKVEDISNEPHVERELMLI 164 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiD---VikV~dlt~~~~V~RELaLI 164 (349)
+.||++.|+...|++.|+||+-++.+.++ .-++++++.++ .++.++.|++... ...| .+.+++++|
T Consensus 333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~d--~~~av~~L~~~~~~~~~~~i-------~~~~~~a~I 401 (465)
T PRK06291 333 GVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEAD--LEKALKALRREFGEGLVRDV-------TFDKDVCVV 401 (465)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHhcCcce-------EEeCCEEEE
Confidence 78999999999999999999998866433 33677776432 3333444433211 1112 366788999
Q ss_pred EEeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 018896 165 KLNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 165 KV~~~~-----~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.|--.. ..-..++......+.+|.-++ ....-|-+.=+.+..+..++.|..
T Consensus 402 svvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~ 459 (465)
T PRK06291 402 AVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHD 459 (465)
T ss_pred EEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHH
Confidence 886543 234467777777788885554 444445455556667777777654
No 195
>PRK03059 PII uridylyl-transferase; Provisional
Probab=87.79 E-value=1.6 Score=48.46 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=38.4
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS 126 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~ 126 (349)
..|.|+..|+||.+++|+|+|+..|.||.+-.+-.+.+.-. =++.|.
T Consensus 679 ~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~ 726 (856)
T PRK03059 679 LQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVL 726 (856)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEe
Confidence 38999999999999999999999999999988866654433 355553
No 196
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=87.65 E-value=2.3 Score=32.45 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=30.3
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g 127 (349)
..|.||.+.+|.+.++++|+||+-++.. .+ -+++++..
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~---~isFtv~~ 46 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE---EVIFTVDG 46 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC---CEEEEEch
Confidence 4578999999999999999999999554 22 36677763
No 197
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=87.15 E-value=24 Score=37.07 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=56.6
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
-+...+++..-++||.|.+++.++..+ ||.-+.--.... .+.+.+.+. .+.+.+++|+++|++. =..+.++++.
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~~~~~~~~l~~~L~~~--Gy~~~dls~n 398 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLSNPQERQEILARLNDG--GYSVVDLTDD 398 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeCCHHHHHHHHHHHHHc--CCCeEECCCC
Confidence 367899999999999999999999984 998887765332 233555544 2567799999999774 3667777775
Q ss_pred hh
Q 018896 155 PH 156 (349)
Q Consensus 155 ~~ 156 (349)
+.
T Consensus 399 e~ 400 (499)
T TIGR01124 399 EL 400 (499)
T ss_pred HH
Confidence 43
No 198
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=87.12 E-value=0.81 Score=35.43 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=27.7
Q ss_pred eeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.-+|++.=.|+||++++|++..++.|-||..+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~ 35 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQ 35 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEE
Confidence 4578999999999999999999999999987754
No 199
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.88 E-value=0.69 Score=39.55 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=30.9
Q ss_pred cceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 312 ~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
..+..|-+.+.|+||.|.+|-..|+.+|.|+-.|.
T Consensus 39 ~~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IE 73 (115)
T cd04930 39 PQKATLLFSLKEGFSSLSRILKVFETFEAKIHHLE 73 (115)
T ss_pred cccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEE
Confidence 34678888889999999999999999999988763
No 200
>PRK14426 acylphosphatase; Provisional
Probab=86.60 E-value=2 Score=35.23 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|..+.++|..++ |.|-...+.++.+++.|++++|++|++.|+.
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 18 GFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 56899999999876 6788888889999999999999999999975
No 201
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=86.16 E-value=3.3 Score=30.77 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=34.3
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
.+.||++.|+...+.+.|+|+...+- .+--+.++|+.+ ..++.++.|++
T Consensus 12 ~~~~gi~~~if~aL~~~~I~v~~~~~----Se~~is~~v~~~--~~~~av~~Lh~ 60 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEILQTAD----SHTTISCLVSED--DVKEAVNALHE 60 (64)
T ss_pred cCCcCHHHHHHHHHHHCCCCEEEEEc----CccEEEEEEcHH--HHHHHHHHHHH
Confidence 47899999999999999999974442 233477888633 34445555544
No 202
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.12 E-value=3.1 Score=31.16 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=37.0
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
+.+|++.|+...|++.|+||.-++.+.++. -++++|+.+ ..++.++.|++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~--sis~~v~~~--~~~~av~~Lh~ 61 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV--NISLIVNDS--EAEGCVQALHK 61 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeHH--HHHHHHHHHHH
Confidence 468999999999999999999988777643 478888743 34444454443
No 203
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=86.02 E-value=13 Score=41.38 Aligned_cols=116 Identities=13% Similarity=0.220 Sum_probs=76.8
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHHhcCeeeeEEEecCCchhhhhh
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd-----~~veQLiKQL~KLiDVikV~dlt~~~~V~RE 160 (349)
+.+++|++.||.+.|++.|+||+-++.+ ..-++++++..+ +.++.+.+++.++-.| + +.+.
T Consensus 332 ~~~~~g~~a~if~~la~~~I~Vd~I~ss----e~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i---~-------~~~~ 397 (861)
T PRK08961 332 MWQQVGFLADVFTLFKKHGLSVDLISSS----ETNVTVSLDPSENLVNTDVLAALSADLSQICRV---K-------IIVP 397 (861)
T ss_pred ccccccHHHHHHHHHHHcCCeEEEEEcC----CCEEEEEEccccccchHHHHHHHHHHHhhcCcE---E-------EeCC
Confidence 3478999999999999999999988532 234777776443 4566777777653222 1 3456
Q ss_pred eeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
+++|-|--.. ..-+.++......+..++-.+...+-|-+.=+.+..+..++.|.+
T Consensus 398 va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~ 457 (861)
T PRK08961 398 CAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLHA 457 (861)
T ss_pred eEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHHH
Confidence 7888885432 233455655555677888887665566555566666666666654
No 204
>PLN02551 aspartokinase
Probab=85.67 E-value=13 Score=39.29 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=72.9
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH--------HHHHHHHHHhcCeeeeEEEecCCchhhh
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--------VLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~--------~veQLiKQL~KLiDVikV~dlt~~~~V~ 158 (349)
-++||.++||.+.|.+.|+||+-++.+ + .-++++++.++. .++++...|+++ ..| .+.
T Consensus 377 ~~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~---~~V-------~v~ 442 (521)
T PLN02551 377 LGQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKI---AVV-------NLL 442 (521)
T ss_pred CCcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC---CeE-------EEe
Confidence 368999999999999999999999643 2 347788875542 233344444432 222 266
Q ss_pred hheeeEEEeCCCCC----HHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 018896 159 RELMLIKLNGDTST----WPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 159 RELaLIKV~~~~~~----R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
+++++|-|--.... -+.++......+.+|.-++ ...+-|-+.=+.+..+..++.|..
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~ 505 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS 505 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHH
Confidence 78888888644222 2356666666777884444 444555555556667777777664
No 205
>PRK08526 threonine dehydratase; Provisional
Probab=85.35 E-value=4.5 Score=41.08 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=51.7
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC---c--EEEEEEe-CChHHHHHHHHHHhcC
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---A--LFTIVVS-GTERVLRQVVEQLNKL 142 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~---g--iiTIVV~-gdd~~veQLiKQL~KL 142 (349)
-+...+.+.+-++||.|.+++.++.+.|-||..+.-...... + .++++++ .+.+.+++|+..|.+.
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 367899999999999999999999999999999987653322 2 3666665 3566788888888553
No 206
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=85.21 E-value=2.8 Score=46.55 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=47.2
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-C---ChHHHHHHHHHHh
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G---TERVLRQVVEQLN 140 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-g---dd~~veQLiKQL~ 140 (349)
......|.|...|+||.|.+|+.+|.+.|++|.+-.+.--.+... |-|.-. | ++...+.|.++|.
T Consensus 780 s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~ 850 (854)
T PRK01759 780 KQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLL 850 (854)
T ss_pred CCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 356789999999999999999999999999999988876655543 444322 2 1222355655554
No 207
>PRK06545 prephenate dehydrogenase; Validated
Probab=85.05 E-value=0.63 Score=45.88 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.0
Q ss_pred cceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 312 ~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
..-+.|.+.|.++||+|++|+++.+..|.||+.|.+
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i 323 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRI 323 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeeccee
Confidence 356899999999999999999999999999998865
No 208
>PRK04374 PII uridylyl-transferase; Provisional
Probab=84.99 E-value=2.6 Score=46.98 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=38.5
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS 126 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~ 126 (349)
..+.|+..|+||.+.+|+|+|+..|+||.+-.+-.+.+.-. =++.|.
T Consensus 691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~ 738 (869)
T PRK04374 691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVL 738 (869)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEe
Confidence 38999999999999999999999999999988877655433 355554
No 209
>PRK14429 acylphosphatase; Provisional
Probab=84.75 E-value=2.8 Score=34.09 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+.++.|++.|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 16 GCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred eeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 45888999999876 6788889999999999999999999999985
No 210
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=84.74 E-value=2.7 Score=39.11 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=62.0
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHH---HHhcCeeeeEEEecCCchh
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE---QLNKLVNVIKVEDISNEPH 156 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiK---QL~KLiDVikV~dlt~~~~ 156 (349)
-.|+++-.|+||..++|+......|.|+..--++.-++.--+.+-+.|+-+.+..|.. ++.+-.|..-+-.=++ ++
T Consensus 6 LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav~~le~~l~~l~~~~~L~v~m~rt~-~~ 84 (176)
T COG2716 6 LVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAVTLLEATLPLLGAELDLLVVMKRTG-AH 84 (176)
T ss_pred EEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHHHHHHHHhhcccccCCeEEEEeecC-CC
Confidence 3788999999999999999999999999876666544443344556666666655555 4444233322222222 22
Q ss_pred h-hhheeeEEEeCCCCCHHH-HHHHHHhcCc
Q 018896 157 V-ERELMLIKLNGDTSTWPE-IMWLVDIFRA 185 (349)
Q Consensus 157 V-~RELaLIKV~~~~~~R~E-I~~la~iFrA 185 (349)
+ ..-.+-++|......|+. +.++++.|.+
T Consensus 85 ~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~ 115 (176)
T COG2716 85 PTPANPAPVWVYVDANDRPGIVEEFTALFDG 115 (176)
T ss_pred ccCCCCceEEEEEEecCCccHHHHHHHHHHh
Confidence 2 333444555555445543 2344444433
No 211
>PRK08639 threonine dehydratase; Validated
Probab=83.84 E-value=8.3 Score=39.08 Aligned_cols=80 Identities=9% Similarity=0.035 Sum_probs=55.4
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--CcEEEEEEeC-ChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~giiTIVV~g-dd~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
-+...+++..-++||.|.+++......+-||..+.--.... .+.+.++++. +.+..+++..+|++.= .+++++++
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 411 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINP 411 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCC
Confidence 35689999999999999999994444444999886543222 2345555553 4467889999998854 35556676
Q ss_pred chhhh
Q 018896 154 EPHVE 158 (349)
Q Consensus 154 ~~~V~ 158 (349)
.+.++
T Consensus 412 ~~~~~ 416 (420)
T PRK08639 412 NEPLY 416 (420)
T ss_pred CHHHH
Confidence 66554
No 212
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.77 E-value=1.2 Score=35.70 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=30.6
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
.++.+.-.++||.|.+|+..|+.-||+|.+-.++
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~ 35 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID 35 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe
Confidence 4788999999999999999999999999986553
No 213
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.63 E-value=3.4 Score=33.40 Aligned_cols=59 Identities=10% Similarity=0.324 Sum_probs=45.0
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC---hHHHHHHHHHHhcCeeeeEE
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT---ERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd---d~~veQLiKQL~KLiDVikV 148 (349)
..++.|.+.|+..+|.+.|+++|-+.-| ..+ ++|+++.+ +..+++|++.|.+-.+.-.+
T Consensus 11 Mn~evGF~rk~L~I~E~~~is~Eh~PSG---ID~-~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 11 MNREVGFGRKLLSILEDNGISYEHMPSG---IDD-ISIIIRDNQLTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred ccchhcHHHHHHHHHHHcCCCEeeecCC---Ccc-EEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999976533 322 89999866 44678888888876554443
No 214
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=83.36 E-value=7.8 Score=36.71 Aligned_cols=67 Identities=10% Similarity=0.177 Sum_probs=51.0
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEE--EEeCChHHHHHHHHHHhcCeeeeEEE
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTI--VVSGTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTI--VV~gdd~~veQLiKQL~KLiDVikV~ 149 (349)
+.+.+..+++ -+..+...|.+.++.|.++.....+++..+++ .+. .+...+++..+|.++.+|.+|+
T Consensus 145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence 5555555444 47888999999999999999887666555444 444 4566888999999999999886
No 215
>PRK11899 prephenate dehydratase; Provisional
Probab=83.19 E-value=1.2 Score=43.32 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.2
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
.+..|-+.+.|+||.|..+-+.|+.||.|+-+|.
T Consensus 193 ~ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIe 226 (279)
T PRK11899 193 IVTTFVFRVRNIPAALYKALGGFATNGVNMTKLE 226 (279)
T ss_pred ceEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEE
Confidence 4677888889999999999999999999987763
No 216
>PRK14420 acylphosphatase; Provisional
Probab=83.07 E-value=3.2 Score=33.65 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ |.|-...+.++.|++.|++++|++|++.|+.
T Consensus 16 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (91)
T PRK14420 16 GFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEK 62 (91)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 46888999999876 6677788889999999999999999999985
No 217
>PRK09181 aspartate kinase; Validated
Probab=82.98 E-value=21 Score=37.42 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=73.7
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEEe
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN 167 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV~ 167 (349)
+++|.+.||.+.|.+.|+||+.+.-+ + .-+++++..+...++++.+.|++...-..++ + +++++|-|-
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss--~--~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~-------~-~~~a~VsvV 408 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATN--A--NTITHYLWGSLKTLKRVIAELEKRYPNAEVT-------V-RKVAIVSAI 408 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEec--C--cEEEEEEcCChHHHHHHHHHHHHhcCCceEE-------E-CCceEEEEe
Confidence 67999999999999999999976543 2 3477777755334677777777654322221 2 678888885
Q ss_pred CCCCCH----HHHHHHHHhcCcEEEEecCC--EEEEEEeCChhHHHHHHHHhcc
Q 018896 168 GDTSTW----PEIMWLVDIFRAKVVDISEH--ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 168 ~~~~~R----~EI~~la~iFrAkIVDvs~~--sltIEvTG~~~KIdafi~~L~~ 215 (349)
-..-.+ +.++......+-+|.-++.. .+-|-+.=+.+..+..++.|..
T Consensus 409 G~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH~ 462 (475)
T PRK09181 409 GSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALHE 462 (475)
T ss_pred CCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHHH
Confidence 543222 35666667777888555444 3344444445555555555543
No 218
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=82.81 E-value=2.5 Score=33.91 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhc--CcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIF--RAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iF--rAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.+ .|.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 18 gFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 18 GFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp SHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 3588899999988 57788889999999999999999999999986
No 219
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=82.66 E-value=6.9 Score=32.40 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=54.4
Q ss_pred cHHHHHHHHHhccCcceeeEeeeecCCCc---E--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 91 GIINRIAGVFARRGYNIESLAVGLNVDKA---L--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 91 GVL~RItGLFsRRGyNIeSLtVg~Ted~g---i--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
.+.+|+..+..+.|.+|.|..+.+....+ + +++.+.|+-..+.+++..|+.--..+-|++++
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~ 83 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLS 83 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEE
Confidence 57889999999999999999999866544 2 66677899999999999999999999999887
No 220
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=81.82 E-value=6.5 Score=29.72 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=31.7
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g 127 (349)
..+.+|++.++...|++.++|++.++.+..+ .-+.+++..
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~ 50 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDE 50 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeH
Confidence 5578999999999999999999999877333 246667663
No 221
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=81.70 E-value=21 Score=39.81 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=82.9
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEEe
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN 167 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV~ 167 (349)
+.||++.||.+.|.+.|+|++-++.+.++. -+.+++. ....+.+.+.|+++... ..=.+++++++|-|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~--~~~~~~~~~~l~~~~~~-------~~i~v~~~~a~VsvV 397 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYT--SEVADSALKLLDDAALP-------GELKLREGLALVALV 397 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEe--HHHHHHHHHHHHhhcCC-------CcEEEeCCeEEEEEe
Confidence 668999999999999999999987663322 3555554 22455666666665211 222367899999986
Q ss_pred CCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 168 GDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 168 ~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
-.. .--..++......+-+++..+...+-|-+.=+.+..+..++.|..
T Consensus 398 G~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~av~~LH~ 450 (810)
T PRK09466 398 GAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLHQ 450 (810)
T ss_pred CCCcccCccHHHHHHHHHHhCCCcEEEEeCCCcEEEEEEehHHHHHHHHHHHH
Confidence 543 223467777777899999999888888777777777777777775
No 222
>PRK14422 acylphosphatase; Provisional
Probab=81.29 E-value=4.3 Score=33.40 Aligned_cols=45 Identities=4% Similarity=-0.104 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ |.|-...+.++.|++-|+.++|++|++.|+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 20 GFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 46889999999876 6788888899999999999999999999974
No 223
>PRK14445 acylphosphatase; Provisional
Probab=81.24 E-value=4.2 Score=33.18 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|=...+.++.|++.|++++|++|++.|+.
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (91)
T PRK14445 18 GFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAER 64 (91)
T ss_pred CChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 46889999999876 6788889999999999999999999999974
No 224
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=81.16 E-value=4.2 Score=40.36 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=37.6
Q ss_pred EEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcC
Q 018896 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (349)
Q Consensus 85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KL 142 (349)
-..|+||++.|+...+++.|+||.+++ .....++++++.+ ..++.++.|++.
T Consensus 346 ~~~~~~g~~a~i~~~L~~~gIni~~i~----~s~~~is~vv~~~--d~~~av~~Lh~~ 397 (401)
T TIGR00656 346 GMVGAPGVASEIFSALEEKNINILMIG----SSETNISFLVDEK--DAEKAVRKLHEV 397 (401)
T ss_pred CcccCccHHHHHHHHHHHCCCcEEEEE----cCCCEEEEEEeHH--HHHHHHHHHHHH
Confidence 345899999999999999999999876 2233578888733 345555555543
No 225
>PRK14436 acylphosphatase; Provisional
Probab=81.09 E-value=4.6 Score=33.12 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ +.|-...+.++.|++-|++++|+.|++.|+.
T Consensus 18 GFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence 46888999999766 7788889999999999999999999999974
No 226
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=80.77 E-value=14 Score=37.42 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=56.0
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--CcEEEEEEeC-ChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~giiTIVV~g-dd~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
+...+++.+-++||.|.+++.+....+-||..+.-..... .+.+.++++. +.+.+++|.+.|++.= .+++++++.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~~ 401 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINEN 401 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCCC
Confidence 5689999999999999999994444544999777654322 2345555552 4566888999888754 356677776
Q ss_pred hhhhh
Q 018896 155 PHVER 159 (349)
Q Consensus 155 ~~V~R 159 (349)
+.++.
T Consensus 402 ~~~~~ 406 (409)
T TIGR02079 402 DILYN 406 (409)
T ss_pred HHHHH
Confidence 65543
No 227
>PRK14428 acylphosphatase; Provisional
Probab=80.46 E-value=5.4 Score=33.39 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ |.|-...+.++.|++.|+++.|++|++.|+.
T Consensus 22 GFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~~ 68 (97)
T PRK14428 22 GFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLAI 68 (97)
T ss_pred cchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHhh
Confidence 46889999999876 6788888889999999999999999999974
No 228
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=80.36 E-value=2 Score=46.98 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=41.8
Q ss_pred cccccccccccccCCCCccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 294 ~~vl~~~~~~~~~~~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
..+++.+|+. +....-...|.+...|++|+|+.|+-+++.-+.||.++..
T Consensus 610 er~i~v~W~~----~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~ 659 (702)
T PRK11092 610 EKFMAVEWDK----ETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNT 659 (702)
T ss_pred ceeEEeEECC----CCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEE
Confidence 4689999972 2223457799999999999999999999999999999874
No 229
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=80.06 E-value=1.7 Score=40.18 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.8
Q ss_pred eeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
.|+|-+.=+|+||++.+|..++++.|.||.+..||
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~ 182 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETA 182 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEE
Confidence 47777777999999999999999999999999876
No 230
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=80.03 E-value=7.5 Score=29.45 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=35.3
Q ss_pred cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 89 kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
+||++.|+...+++.|+|+..++.+.++ -.++++|+. +..++.++.|+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~--~~is~~V~~--~~~~~av~~Lh 61 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN--VDVQFVVDR--DDYDNAIKALH 61 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe--eEEEEEEEH--HHHHHHHHHHH
Confidence 7899999999999999999988877653 247777763 33444444443
No 231
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.31 E-value=1.9 Score=34.58 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=29.0
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+|.+.-.|+||.|.+|+..|++-|.+|.+--+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI 33 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRF 33 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEE
Confidence 68899999999999999999999999987544
No 232
>PRK14449 acylphosphatase; Provisional
Probab=79.26 E-value=6.1 Score=32.18 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ |.|-...+.++.|++.|++++|++|++.|+.
T Consensus 17 GFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 17 GLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred ChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999999876 5677778889999999999999999999985
No 233
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=79.25 E-value=1.6 Score=43.03 Aligned_cols=35 Identities=37% Similarity=0.591 Sum_probs=31.9
Q ss_pred ccceeEEEEEEeCCCchhhhhhhhhccccccccee
Q 018896 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 311 ~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
...+.+|-+.|.|+||.|.++-|.|+.||.|.-.|
T Consensus 191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkI 225 (279)
T COG0077 191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKI 225 (279)
T ss_pred CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeE
Confidence 55789999999999999999999999999997665
No 234
>PRK14433 acylphosphatase; Provisional
Probab=78.93 E-value=5.5 Score=32.41 Aligned_cols=45 Identities=7% Similarity=0.028 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ +.|-...+.++.|++.|+++.|++|++.|+.
T Consensus 15 GFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 61 (87)
T PRK14433 15 GYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLRR 61 (87)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 46888999999766 7788889999999999999999999999984
No 235
>PRK14427 acylphosphatase; Provisional
Probab=78.90 E-value=5.9 Score=32.69 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+.++.|++.|+.++|++|++.|+.
T Consensus 20 GFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 20 GFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 46889999999876 7788889999999999999999999999984
No 236
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.79 E-value=1.7 Score=34.33 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=26.7
Q ss_pred EEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
.|-+.+.|+||.|.++-..|+.+|.|+-.|.
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~Ie 32 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIE 32 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEE
Confidence 3556678999999999999999999987763
No 237
>PRK14444 acylphosphatase; Provisional
Probab=78.76 E-value=6.3 Score=32.31 Aligned_cols=45 Identities=7% Similarity=-0.140 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|..+.++|..++ +.|=...+.++.|++.|++++|+.|++.|+.
T Consensus 18 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14444 18 NFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCYS 64 (92)
T ss_pred CcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 46889999999866 7788889999999999999999999999973
No 238
>PRK14637 hypothetical protein; Provisional
Probab=78.48 E-value=12 Score=33.54 Aligned_cols=105 Identities=15% Similarity=0.207 Sum_probs=72.2
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHHhcCeeeeE-EEecC---Cchhhhh
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIK-VEDIS---NEPHVER 159 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd----d~~veQLiKQL~KLiDVik-V~dlt---~~~~V~R 159 (349)
..-|--..+..+....||.+.-+..........++|.++.+ -+..+++-++|...+|+.- +.++. ..|-++|
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldR 85 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIER 85 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCC
Confidence 34577788899999999999999998887777899998743 3667888888877766421 11111 1333444
Q ss_pred he-----------eeEEEeCCCCCHHHHHHHHHhc-CcEEEEecCCEEEEEEeC
Q 018896 160 EL-----------MLIKLNGDTSTWPEIMWLVDIF-RAKVVDISEHALTIEVTG 201 (349)
Q Consensus 160 EL-----------aLIKV~~~~~~R~EI~~la~iF-rAkIVDvs~~sltIEvTG 201 (349)
+| -++||+.. .+ +.| .|.+.++.++.++++..|
T Consensus 86 pL~~~~~f~r~~G~~V~V~l~--~~-------~~~~~G~L~~~~d~~v~l~~~~ 130 (151)
T PRK14637 86 VIKNAAEFSIFVGETVKVWFE--CT-------GQWQVGTIAEADETCLVLTSDG 130 (151)
T ss_pred CCCCHHHHHHhCCCEEEEEEC--CC-------CcEEEEEEEEEeCCEEEEEECC
Confidence 43 24566542 11 236 699999999999999755
No 239
>PRK14430 acylphosphatase; Provisional
Probab=78.47 E-value=6.1 Score=32.50 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14430 18 GYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWMEA 64 (92)
T ss_pred eeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 45888999999876 6788888889999999999999999999965
No 240
>PRK14423 acylphosphatase; Provisional
Probab=78.32 E-value=6.2 Score=32.29 Aligned_cols=45 Identities=7% Similarity=-0.062 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ +.|-...+.++.|++.|++++|+.|++.|+.
T Consensus 19 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 65 (92)
T PRK14423 19 YYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCHE 65 (92)
T ss_pred eehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 46888999999876 7788899999999999999999999999974
No 241
>PRK14439 acylphosphatase; Provisional
Probab=77.41 E-value=6.1 Score=36.39 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhccCC
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG 217 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~fG 217 (349)
.-|.-+.++|+.++ |.|-...+.++.|++.|++++|+.|++.|+..|
T Consensus 89 GFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 89 GFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 57889999999887 678888899999999999999999999998754
No 242
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=77.23 E-value=13 Score=30.19 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=32.4
Q ss_pred EEEEEEEcCcccHHH----HHHHHHhccCcc-eeeEeeeecCCCcEEEEEEeCC
Q 018896 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 80 htISIlVeNkPGVL~----RItGLFsRRGyN-IeSLtVg~Ted~giiTIVV~gd 128 (349)
+...|+|..|||+|. .|.+-+.+.||+ |..+.+|. ++++.++++
T Consensus 1 ~~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK-----~~~l~~~~~ 49 (80)
T PF02700_consen 1 MKVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGK-----YIELELEAD 49 (80)
T ss_dssp EEEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEE-----EEEEEEE-S
T ss_pred CEEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEE-----EEEEEEeCC
Confidence 357899999999995 688888999999 99998873 578888765
No 243
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=77.11 E-value=2.8 Score=45.55 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=41.8
Q ss_pred cccccccccccccCCCCccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 294 ~~vl~~~~~~~~~~~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
..+++..|+. +....-...|.+...|++|+|+.|+.+++.-+.||.++.+
T Consensus 594 er~I~v~W~~----~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~ 643 (683)
T TIGR00691 594 EKIIEVEWNA----SKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSIST 643 (683)
T ss_pred ccEEEEEecC----CCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEe
Confidence 4789999972 1222457799999999999999999999999999999875
No 244
>PRK14432 acylphosphatase; Provisional
Probab=77.04 E-value=7.1 Score=32.21 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEe-CChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVT-GDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvT-G~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ |.|-...+.++.+++. |++++|+.|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 16 GFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred eehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 45888889998766 7788889999999997 999999999999976
No 245
>PRK14442 acylphosphatase; Provisional
Probab=77.04 E-value=6.5 Score=32.19 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|..+.++|+.++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14442 18 GFRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLGR 64 (91)
T ss_pred cccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 46889999999876 6788888899999999999999999999984
No 246
>PRK14435 acylphosphatase; Provisional
Probab=76.90 E-value=6.7 Score=32.05 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|..+.++|..++ |.|-...+.++.+++.|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 62 (90)
T PRK14435 16 GFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVAK 62 (90)
T ss_pred CChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 46888999999776 5677778889999999999999999999984
No 247
>PRK14447 acylphosphatase; Provisional
Probab=76.84 E-value=7.3 Score=32.12 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCC-EEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEH-ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~-sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ |.|-...+. ++.+++.|++++|++|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~~ 65 (95)
T PRK14447 18 FFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWARV 65 (95)
T ss_pred cchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 46889999999877 556666777 6999999999999999999973
No 248
>PRK14441 acylphosphatase; Provisional
Probab=76.80 E-value=7.1 Score=32.08 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+.++.+++.|+++.|+.|++.|+.
T Consensus 19 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 19 AFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred cchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 46889999999876 6788888899999999999999999999974
No 249
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=76.74 E-value=2.4 Score=41.89 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.3
Q ss_pred ccceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 311 ~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
.-+..+|++.+.++||.|++++.+++..|-||-++.
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~ 337 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKID 337 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 336679999999999999999999999999998874
No 250
>PRK14438 acylphosphatase; Provisional
Probab=76.55 E-value=7.4 Score=31.81 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ +.|-...+.++.|++-|++++|++|++.|+.
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (91)
T PRK14438 17 AFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCHH 63 (91)
T ss_pred CccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 46888999999876 7788889999999999999999999999974
No 251
>PRK02047 hypothetical protein; Provisional
Probab=75.92 E-value=21 Score=29.42 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=54.9
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcc--eeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYN--IESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyN--IeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVikV 148 (349)
..+.+.+...+.++..+.|..++.++... -++++.-++....+ +|+.+. .++++++.|=+.|.+.-.|.-|
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v 90 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV 90 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence 35899999999999999999999998555 55576666666554 455444 4778899999999888888544
No 252
>PRK14421 acylphosphatase; Provisional
Probab=75.65 E-value=8.8 Score=32.22 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ |.|-...+.++.|++.|++++|++|++.|+.
T Consensus 18 GFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (99)
T PRK14421 18 GYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCRR 64 (99)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 46888999999775 6788888889999999999999999999974
No 253
>PRK14440 acylphosphatase; Provisional
Probab=75.26 E-value=8.5 Score=31.50 Aligned_cols=45 Identities=2% Similarity=0.015 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ |.|-...+.++.|++.|++++|+.|++.|+.
T Consensus 17 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14440 17 GFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 63 (90)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 46888999999876 5677788889999999999999999999985
No 254
>PRK14451 acylphosphatase; Provisional
Probab=75.04 E-value=8.1 Score=31.57 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 17 WFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 45888899999776 6678888889999999999999999999985
No 255
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=74.84 E-value=0.98 Score=36.14 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=25.7
Q ss_pred EEEEEeC-CCchhhhhhhhhcccccccceee
Q 018896 317 LSMLVNN-TPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 317 ls~~V~n-~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
++++=.. .+|.+++|+.+.|.+|.||+.|.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~ 32 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIR 32 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 5566667 89999999999999999998763
No 256
>PRK14645 hypothetical protein; Provisional
Probab=74.69 E-value=8.6 Score=34.64 Aligned_cols=110 Identities=15% Similarity=0.288 Sum_probs=76.7
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC------hHHHHHHHHHHhcCeeeeEEEe----cC-Cc
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVED----IS-NE 154 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd------d~~veQLiKQL~KLiDVikV~d----lt-~~ 154 (349)
.+|+.-+-..+..+....||-+..+.+.......+++|.++.+ -+..+++-++|..++|+..... |. ..
T Consensus 5 ~~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSS 84 (154)
T PRK14645 5 TENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVES 84 (154)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeC
Confidence 3677778888999999999999999988776666789988742 2567888889999998653211 00 12
Q ss_pred hhhhhhee-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhH
Q 018896 155 PHVERELM-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGK 205 (349)
Q Consensus 155 ~~V~RELa-----------LIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~K 205 (349)
|-++|.|- .+||+.. -+.|.|++.++.++.++|++-|..-+
T Consensus 85 PGldRpL~~~~df~r~~G~~v~v~~~----------~k~~~G~L~~~~d~~i~l~~~~~~~~ 136 (154)
T PRK14645 85 PGPKRPLFTARHFERFAGLKAKVRGP----------GENFTGRIKAVSGDQVTFDVGGEDRT 136 (154)
T ss_pred CCCCCCCCCHHHHHHhCCCEEEEEcC----------CeEEEEEEEEEeCCEEEEEECCeEEE
Confidence 33444332 3555421 25688999999999999987665433
No 257
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=74.69 E-value=7.9 Score=40.38 Aligned_cols=68 Identities=10% Similarity=0.297 Sum_probs=54.1
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC-ChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g-dd~~veQLiKQL~KLiDVikV~dlt 152 (349)
|.|.-+|+.|+..-|..+|..+++||.++-+.+. ++|-+-+.. +.....++++++.++..|..|..+.
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 71 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---CeEEEeCCCcChhhHHHHHHHHhcCCCccchhhhc
Confidence 6788999999999999999999999999998443 555554443 3455788999999998888885443
No 258
>PRK14448 acylphosphatase; Provisional
Probab=73.84 E-value=9.2 Score=31.24 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ +.|-...+.++.|++.|++++++.|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 16 GFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred chHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 45888999999876 6788888889999999999999999999985
No 259
>PRK14640 hypothetical protein; Provisional
Probab=73.84 E-value=47 Score=29.68 Aligned_cols=107 Identities=12% Similarity=0.225 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHHhcCeeeeEEEe----cC-Cchhhhhhee
Q 018896 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVERELM 162 (349)
Q Consensus 92 VL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd----d~~veQLiKQL~KLiDVikV~d----lt-~~~~V~RELa 162 (349)
+...+.-+....||-+..+.........+++|.++.+ -+..+.+-++|..++|+..... |. ..|-++|.|-
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~ 87 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLF 87 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCC
Confidence 4556778888999999999988777777889988743 3668888899999998642210 00 1334444442
Q ss_pred -----------eEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhH
Q 018896 163 -----------LIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGK 205 (349)
Q Consensus 163 -----------LIKV~~~--~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~K 205 (349)
.+||+.. ...+ +.|.|++.++.++.+++++-|...+
T Consensus 88 ~~~~f~r~~G~~v~V~l~~~~~~~-------k~~~G~L~~v~~~~v~l~~~~~~~~ 136 (152)
T PRK14640 88 KVAQFEKYVGQEAAVTLRMATNNR-------RKFKGVIKAVQGDMITLTVDGKDEV 136 (152)
T ss_pred CHHHHHHhCCCeEEEEEecccCCc-------eEEEEEEEEEeCCEEEEEECCeEEE
Confidence 3566542 1222 6799999999999999998776433
No 260
>PRK00907 hypothetical protein; Provisional
Probab=73.71 E-value=26 Score=29.28 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=53.9
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCc--ceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeE
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGY--NIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIK 147 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGy--NIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVik 147 (349)
.+.|.|.-.++++....|..++.+..- +-+++++-++....+ +|+++. .+.++++.|=+.|.+.-.|.-
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vkm 90 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVKW 90 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence 589999999999999999999998765 455666666666554 555544 467889999999988887743
No 261
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=73.59 E-value=23 Score=28.42 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCeeeeEEEecCCchhhhhhee-------eEEEeCCCCCHH----HHHHHHHhcCcEEEEecCCEEEE
Q 018896 130 RVLRQVVEQLNKLVNVIKVEDISNEPHVERELM-------LIKLNGDTSTWP----EIMWLVDIFRAKVVDISEHALTI 197 (349)
Q Consensus 130 ~~veQLiKQL~KLiDVikV~dlt~~~~V~RELa-------LIKV~~~~~~R~----EI~~la~iFrAkIVDvs~~sltI 197 (349)
+....|.++-.+|-+++.|---.=.+.+.+|+- ||||++....+. -..+|++..+|.+|++-.+++++
T Consensus 4 ke~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~~vl 82 (84)
T PF01985_consen 4 KERKFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRTIVL 82 (84)
T ss_dssp HHHHHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 344555566666666665554333333433322 566665443333 35567889999999999888876
No 262
>PRK14446 acylphosphatase; Provisional
Probab=73.17 E-value=7.2 Score=32.00 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+.++.|++.|+++.++.|++.|+.
T Consensus 16 GFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~~ 62 (88)
T PRK14446 16 WYRASTRERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLWQ 62 (88)
T ss_pred eEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHhh
Confidence 35888899999776 6688888999999999999999999999984
No 263
>PRK14425 acylphosphatase; Provisional
Probab=73.00 E-value=11 Score=31.12 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ |.|-...+.++.|++-|+.++|+.|++.|+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 20 GFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999999876 5677888889999999999999999999985
No 264
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=72.80 E-value=15 Score=29.24 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=44.1
Q ss_pred cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCee
Q 018896 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVN 144 (349)
Q Consensus 89 kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiD 144 (349)
.+|.-.+|..+++|.+.+|-+- +-+-.-+|+.+.++.+.++++.+.|+|..+
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K----~~nANtit~yl~~~~k~~~r~~~~Le~~~p 65 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK----DTNANTITHYLAGSLKTIKRLTEDLENRFP 65 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE----ecCCCeEEEEEEcCHHHHHHHHHHHHHhCc
Confidence 4789999999999999999866 444456999999999999999999987653
No 265
>PRK06382 threonine dehydratase; Provisional
Probab=72.44 E-value=3.8 Score=41.29 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=32.9
Q ss_pred ccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 311 ~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
.-+...|.+.+.++||.|..++.+|+..|.||-++..
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~ 363 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEV 363 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEE
Confidence 3466789999999999999999999999999988754
No 266
>PRK14450 acylphosphatase; Provisional
Probab=72.22 E-value=10 Score=30.80 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCE-EEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHA-LTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~s-ltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ |.|-...+.+ +.|++.|++++|+.|++.|+.
T Consensus 16 GFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~~ 63 (91)
T PRK14450 16 YFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLRS 63 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999999766 6777888875 999999999999999999984
No 267
>PRK14443 acylphosphatase; Provisional
Probab=72.15 E-value=12 Score=31.08 Aligned_cols=46 Identities=7% Similarity=0.072 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhccC
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSKF 216 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~f 216 (349)
.-|.-+.++|..++ +.|-...+.++.|++.|++++|+.|++.|+.-
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~g 65 (93)
T PRK14443 18 GFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKKG 65 (93)
T ss_pred cCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhcC
Confidence 46888889998775 67888889999999999999999999999763
No 268
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=71.19 E-value=14 Score=31.64 Aligned_cols=56 Identities=30% Similarity=0.514 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHhccC--cceeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHHhcCeee
Q 018896 90 SGIINRIAGVFARRG--YNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNV 145 (349)
Q Consensus 90 PGVL~RItGLFsRRG--yNIeSLtVg~Ted-~giiTIVV~-gdd~~veQLiKQL~KLiDV 145 (349)
.|+|+|+..+.-..| |.|..+.+|.+.+ +++..|.|. .+++.+++|+.+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 589999999777665 8899999997664 456777776 4678899999998877554
No 269
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.32 E-value=89 Score=29.50 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=56.5
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeee--cC-CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEE
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~--Te-d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~ 149 (349)
.+...+++-|+|=-....+|..+..+.|-.|++-.... .. +.....|++.-....++..+.+|.++=.|..-.
T Consensus 49 i~~~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~ 124 (262)
T PF14257_consen 49 IKTADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRN 124 (262)
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeee
Confidence 45679999999999999999999999998899998762 22 222355555556677999999999887666544
No 270
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=70.19 E-value=25 Score=30.42 Aligned_cols=103 Identities=17% Similarity=0.297 Sum_probs=63.2
Q ss_pred HHHHHhccCcceeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHHhcCeeeeEEEe----cC-Cchhhhhhee----
Q 018896 96 IAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVERELM---- 162 (349)
Q Consensus 96 ItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd----d~~veQLiKQL~KLiDVikV~d----lt-~~~~V~RELa---- 162 (349)
|..+....||.+..+.+.......+++|.++.+ -+.++++.+.+..++|+..... |. ..|-++|.|-
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~~~~ 81 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKSPRD 81 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SSHHH
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCCHHH
Confidence 456778899999999999888777899998642 3556777788888887733210 00 0233444442
Q ss_pred -------eEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhH
Q 018896 163 -------LIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGK 205 (349)
Q Consensus 163 -------LIKV~~~--~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~K 205 (349)
.++|... ... -+.|.|++++++++++++++.|...+
T Consensus 82 ~~~~iG~~v~v~~~~~~~~-------~~~~~G~L~~~~~~~i~l~~~~~~~~ 126 (141)
T PF02576_consen 82 FERFIGRKVKVKLKQPVNG-------RKEFEGKLLEVDEDEITLEVEGKGKK 126 (141)
T ss_dssp HHHH-SEEEEEE-SS-SSS--------SEEEEEEEEEETTEEEEEEE-SS-E
T ss_pred HHHhcCCeEEEEEeccCCC-------cEEEEEEEEEEeCCEEEEEECCccce
Confidence 3455542 122 24689999999999999999987543
No 271
>PRK04998 hypothetical protein; Provisional
Probab=69.90 E-value=33 Score=27.89 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=49.5
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeE
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIK 147 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVik 147 (349)
..+.+.+...+.++.++.|..+|.+..-.-+.++.-++....+ +|+.+. .+++.++.|=+.|.+...|+-
T Consensus 14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~m 86 (88)
T PRK04998 14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVRM 86 (88)
T ss_pred CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEEE
Confidence 3589999999999999999999977633323344444443333 455443 477779999999988887753
No 272
>PRK14636 hypothetical protein; Provisional
Probab=69.85 E-value=78 Score=29.15 Aligned_cols=104 Identities=10% Similarity=0.084 Sum_probs=71.1
Q ss_pred ccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC------hHHHHHHHHHHhcCeeeeEE---------E-----
Q 018896 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKV---------E----- 149 (349)
Q Consensus 90 PGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd------d~~veQLiKQL~KLiDVikV---------~----- 149 (349)
+-+...+..+....||-+.-+.+-......+++|.++.+ -+..+++-++|..++|+... .
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGld 84 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC
Confidence 345667788899999999999986666666789988643 26788899999999986432 1
Q ss_pred -ecCCchhhhhhe-eeEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 018896 150 -DISNEPHVEREL-MLIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (349)
Q Consensus 150 -dlt~~~~V~REL-aLIKV~~~--~~~R~EI~~la~iFrAkIVDvs~~sltIEvT 200 (349)
.|+...+..|-. =+|||+.. ...+ +.|.|+++++..+.++|++.
T Consensus 85 RpL~~~~df~r~~G~~V~V~l~~~~~g~-------k~~~G~L~~v~~~~v~l~~~ 132 (176)
T PRK14636 85 RPLTRPKDFADWAGHEARIALSEPLDGR-------KQFRGELKGIDGDTVTIADN 132 (176)
T ss_pred CCCCCHHHHHHhCCCeEEEEEecccCCe-------EEEEEEEEEEeCCEEEEEEc
Confidence 122233333332 23455432 2222 57899999999999999873
No 273
>PRK05783 hypothetical protein; Provisional
Probab=69.81 E-value=30 Score=28.59 Aligned_cols=60 Identities=7% Similarity=0.123 Sum_probs=42.0
Q ss_pred eEEEEEEEEcCcccHHH----HHHHHHhccCcc-eeeEeeeecCCCcEEEEEEeCC-hHHHHHHHHH-HhcC
Q 018896 78 KRHTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQ-LNKL 142 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~----RItGLFsRRGyN-IeSLtVg~Ted~giiTIVV~gd-d~~veQLiKQ-L~KL 142 (349)
|.+.+.|+|..|||+|. -|.+-+.++||+ |.++.+| .++.+.++++ ++..++.+++ .+||
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvG-----K~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAG-----KYLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEee-----EEEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 45789999999999995 688888888885 7777765 2578888754 3333444444 4555
No 274
>PRK14634 hypothetical protein; Provisional
Probab=69.35 E-value=86 Score=28.18 Aligned_cols=107 Identities=9% Similarity=0.196 Sum_probs=71.2
Q ss_pred ccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC------hHHHHHHHHHHhcCeeeeEEEe----cC-Cchhhh
Q 018896 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVE 158 (349)
Q Consensus 90 PGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd------d~~veQLiKQL~KLiDVikV~d----lt-~~~~V~ 158 (349)
.-+-..+..+....||-+..+.+.......+++|.++.+ -+..+.+-++|..+.|+..... |. ..|-++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIG 86 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 345566677788999999999987766666788888732 2457788889999998643210 00 133344
Q ss_pred hhee-----------eEEEeC--CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 018896 159 RELM-----------LIKLNG--DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (349)
Q Consensus 159 RELa-----------LIKV~~--~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~ 203 (349)
|.|- ++||+. ....+ +.|.|+++++.++.+++++-|..
T Consensus 87 RpL~~~~~f~r~~G~~V~V~l~~~~~~~-------k~~~G~L~~~~~~~v~l~~~~~~ 137 (155)
T PRK14634 87 DQLSSDRDFQTFRGFPVEVSHRDDDGSE-------QRLEGLLLERNEDHLQINIRGRI 137 (155)
T ss_pred CcCCCHHHHHHhCCCeEEEEEecCCCCe-------EEEEEEEEEEeCCEEEEEECCEE
Confidence 4331 344443 22222 57999999999999999986543
No 275
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=69.21 E-value=19 Score=29.92 Aligned_cols=54 Identities=22% Similarity=0.487 Sum_probs=41.0
Q ss_pred EEEEEEEcCcccHHH----HHHHHHhccCcc-eeeEeeeecCCCcEEEEEEeC-ChHHHHHHHHH
Q 018896 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSG-TERVLRQVVEQ 138 (349)
Q Consensus 80 htISIlVeNkPGVL~----RItGLFsRRGyN-IeSLtVg~Ted~giiTIVV~g-dd~~veQLiKQ 138 (349)
+...|.|..|||+|. -|.+-+.+.||+ +..+.+| .+|.|.++. +++..++.++.
T Consensus 2 ~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~g-----K~~el~ld~~~~e~a~~~v~~ 61 (83)
T COG1828 2 YKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVG-----KVIELELDAESEEKAEEEVKE 61 (83)
T ss_pred eEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeee-----eEEEEEecCcchhHHHHHHHH
Confidence 567899999999995 789999999999 8877765 368888886 34444444443
No 276
>PRK14646 hypothetical protein; Provisional
Probab=69.15 E-value=37 Score=30.55 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=74.1
Q ss_pred cHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC------hHHHHHHHHHHhcCeeeeEEEe----cC-Cchhhhh
Q 018896 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVER 159 (349)
Q Consensus 91 GVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd------d~~veQLiKQL~KLiDVikV~d----lt-~~~~V~R 159 (349)
-+...+..+....||-+.-+.........+++|.++.+ -+..+.+-++|..++|+..... |. ..|-++|
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldR 87 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSD 87 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCC
Confidence 45667888899999999999988777777788888743 3567888899999998643211 00 1334444
Q ss_pred he-----------eeEEEeC--CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 018896 160 EL-----------MLIKLNG--DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (349)
Q Consensus 160 EL-----------aLIKV~~--~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~ 203 (349)
.| -.+||+. .... -+.|.|.+.++.++.++|++-|..
T Consensus 88 pL~~~~df~r~~G~~v~V~l~~~~~~-------~~~~~G~L~~~~~~~v~l~~~g~~ 137 (155)
T PRK14646 88 ELTSERDFKTFKGFPVNVELNQKNSK-------IKFLNGLLYEKSKDYLAINIKGKI 137 (155)
T ss_pred cCCCHHHHHHhCCCEEEEEEecCcCC-------eEEEEEEEEEEeCCEEEEEECCEE
Confidence 43 2455544 2222 267999999999999999987653
No 277
>PRK06635 aspartate kinase; Reviewed
Probab=69.04 E-value=8.2 Score=38.40 Aligned_cols=50 Identities=16% Similarity=0.369 Sum_probs=36.3
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
..++||++.+|...|++.|+||+.++. ....+.+++..++ .++..+.|++
T Consensus 350 ~~~~~g~~a~i~~~La~~~Ini~~i~s----s~~~is~vv~~~d--~~~a~~~Lh~ 399 (404)
T PRK06635 350 MRSHPGVAAKMFEALAEEGINIQMIST----SEIKISVLIDEKY--LELAVRALHE 399 (404)
T ss_pred CCCCchHHHHHHHHHHHCCCCEEEEEe----cCCeEEEEEcHHH--HHHHHHHHHH
Confidence 468999999999999999999998863 1245777776433 4444555544
No 278
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=68.97 E-value=26 Score=28.06 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=50.5
Q ss_pred EEEEEEEcCcccHHHHHHHHHhc-cCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEe
Q 018896 80 HTISVFVGDESGIINRIAGVFAR-RGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsR-RGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~d 150 (349)
|.-|+.|.=+|+-+..+..-+.. -|..|. ..++.|.+-+++. .+.+.+...+++|+.|..|+.+.-
T Consensus 4 hIss~vV~~~p~~~~~v~~~l~~~~gvEVh-----~~~~~GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~l 71 (79)
T PF03927_consen 4 HISSLVVHARPERLEEVAEALAAIPGVEVH-----AVDEDGKIVVTIEAESSEEEVDLIDAINALPGVLSASL 71 (79)
T ss_dssp CEEEEEEEE-CCCHHHHHHHHCCSTTEEEE-----EEETTTEEEEEEEESSHHHHHHHHHHHCCSTTEEEEEE
T ss_pred eEEEEEEEECchhHHHHHHHHHcCCCcEEE-----eeCCCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 67789999999999999988876 455443 3334488777776 456778899999999999999873
No 279
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=68.93 E-value=4.1 Score=41.45 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=31.9
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
..++|.+.=+|.||++++|+.+++..|.||..+.+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~ 371 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYL 371 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHhee
Confidence 56888889999999999999999999999988754
No 280
>PRK14452 acylphosphatase; Provisional
Probab=68.19 E-value=15 Score=31.39 Aligned_cols=45 Identities=9% Similarity=0.077 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ |.|-...+.++.|++.|++++|++|++.++.
T Consensus 34 GFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l~~ 80 (107)
T PRK14452 34 GFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWCER 80 (107)
T ss_pred ChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhc
Confidence 56899999999876 6788888889999999999999999998886
No 281
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=67.91 E-value=18 Score=28.81 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=39.4
Q ss_pred CHHHHHHHHHhcCcEEE--EecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 172 TWPEIMWLVDIFRAKVV--DISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 172 ~R~EI~~la~iFrAkIV--Dvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
--.+|+++...|+.++| |.+.+++++=++|+..+++.+++.|++
T Consensus 17 ~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~ 62 (71)
T cd04910 17 YDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLEN 62 (71)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHH
Confidence 45689999999999996 568899999999999999999999964
No 282
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=67.85 E-value=31 Score=38.41 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=76.7
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCe----eeeEEEecCCchhhhhhe
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV----NVIKVEDISNEPHVEREL 161 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLi----DVikV~dlt~~~~V~REL 161 (349)
+.++||++.||...|++.|+||+-++.+.++ --++++++.++ .+..++-|++-. .-..+..+ .+...+
T Consensus 325 m~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~~d--~~~av~~L~~~f~~el~~~~~~~i----~~~~~v 396 (819)
T PRK09436 325 MKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQSD--AAKAKRALEEEFALELKEGLLEPL----EVEENL 396 (819)
T ss_pred CCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHHhccCCcceE----EEeCCE
Confidence 3478999999999999999999988866433 23777777432 333333333311 10011111 255678
Q ss_pred eeEEEeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 018896 162 MLIKLNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 162 aLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
++|.|--.. .--..++......+.+|.-++ .....|.+.=+.+..+..++.|.+
T Consensus 397 alIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~ 457 (819)
T PRK09436 397 AIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQ 457 (819)
T ss_pred EEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHH
Confidence 999886542 233466777777777885554 454555555566777788888775
No 283
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=67.65 E-value=4.1 Score=41.45 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=29.7
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
.+..|-+.+.|+||.|.++-+.|+.||.|+-+|.
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIe 329 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLE 329 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEE
Confidence 3677778889999999999999999999987763
No 284
>PRK14437 acylphosphatase; Provisional
Probab=67.16 E-value=14 Score=31.51 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ |.|-...+.++.|++.|+++.|+.|++.|+.
T Consensus 37 GFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~~ 83 (109)
T PRK14437 37 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 83 (109)
T ss_pred CchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 56899999999876 6688888889999999999999999999984
No 285
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=66.35 E-value=38 Score=27.58 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=52.2
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
...++.+++..-.+||.|-+.+..+..+. ||.-++=--+.+ .+. +-|-+. +.+.++.++++|+++= ..+.|++
T Consensus 7 ~~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v~-~~~~~~~l~~~L~~~g--y~~~dls 82 (91)
T PF00585_consen 7 EGREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEVP-DAEDLEELIERLKALG--YPYEDLS 82 (91)
T ss_dssp H--EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-S-STHHHHHHHHHHTSSS---EEECTT
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEeC-CHHHHHHHHHHHHHcC--CCeEECC
Confidence 35678999999999999999999987665 688777664443 455 445555 3444899999999884 6778888
Q ss_pred Cchhh
Q 018896 153 NEPHV 157 (349)
Q Consensus 153 ~~~~V 157 (349)
+.+..
T Consensus 83 ~ne~~ 87 (91)
T PF00585_consen 83 DNELA 87 (91)
T ss_dssp T-HHH
T ss_pred CCHHH
Confidence 87654
No 286
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.27 E-value=20 Score=26.37 Aligned_cols=49 Identities=18% Similarity=0.376 Sum_probs=33.5
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
.+.||++.|+...|++ ++|.-++.+.+ +-.++++|+.++ .+.+++.|++
T Consensus 12 ~~~~~v~~~i~~~L~~--i~i~~i~~~~s--~~~is~~V~~~~--~~~a~~~Lh~ 60 (64)
T cd04917 12 SETAGVEKRIFDALED--INVRMICYGAS--NHNLCFLVKEED--KDEVVQRLHS 60 (64)
T ss_pred cCCcCHHHHHHHHHHh--CCeEEEEEecC--ccEEEEEEeHHH--HHHHHHHHHH
Confidence 3689999999999964 78877766654 335788887432 4555555543
No 287
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=65.85 E-value=23 Score=27.79 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=46.9
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHH-HHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKM-VAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~---~sltIEvTG~~~KI-dafi~~L~~ 215 (349)
++.+.|.++.+.-..|+..+..-||+|++... +...|+..-....+ ..|...|+.
T Consensus 3 i~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s 61 (80)
T cd03709 3 FVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKS 61 (80)
T ss_pred EEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHh
Confidence 45678888888899999999999999999865 47889999999998 788887765
No 288
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=65.31 E-value=32 Score=37.96 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=48.1
Q ss_pred EEEEEEE-cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe---CCh----HHHHHHHHHHhcCeeee
Q 018896 80 HTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS---GTE----RVLRQVVEQLNKLVNVI 146 (349)
Q Consensus 80 htISIlV-eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~---gdd----~~veQLiKQL~KLiDVi 146 (349)
++++|.. -+++|.|.|++|+++-.|.+|.|-.+.. +....-..+|. |.+ .-.+++...+.--+++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc
Confidence 7899999 9999999999999999999999999887 55555455544 432 22334444565555655
No 289
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.23 E-value=16 Score=41.25 Aligned_cols=51 Identities=22% Similarity=0.381 Sum_probs=41.6
Q ss_pred ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEE
Q 018896 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIV 124 (349)
Q Consensus 74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIV 124 (349)
...-..+.+.+...|+||.|.+|+++|+.-+.+|.+..+.--.+... +.++
T Consensus 786 t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt 838 (867)
T COG2844 786 TASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT 838 (867)
T ss_pred ccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEe
Confidence 44457899999999999999999999999999999988776555433 4444
No 290
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=65.23 E-value=7.3 Score=43.14 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=40.9
Q ss_pred cccccccccccccCCCCccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 294 ~~vl~~~~~~~~~~~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+.+++..|+. .....-...|.+...|++|+|+.|+-+++.-+.||.++.+
T Consensus 650 eR~I~V~W~~----~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~ 699 (743)
T PRK10872 650 ERIVDAVWGE----SYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVAS 699 (743)
T ss_pred ceEEEeEecC----CCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEe
Confidence 4688999972 1122456789999999999999999999999999988764
No 291
>PRK08198 threonine dehydratase; Provisional
Probab=65.21 E-value=6.5 Score=39.23 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=34.2
Q ss_pred CCccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 309 ~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
...-+...+++.+.++||.|+++...++..|-||.++.-
T Consensus 322 ~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~ 360 (404)
T PRK08198 322 VAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDH 360 (404)
T ss_pred hhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEE
Confidence 445567899999999999999999999999999988753
No 292
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=65.14 E-value=1e+02 Score=27.36 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=71.8
Q ss_pred cHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC----ChHHHHHHHHHHhcCeeeeEEEe--cC---Cchhhhhhe
Q 018896 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNVIKVED--IS---NEPHVEREL 161 (349)
Q Consensus 91 GVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g----dd~~veQLiKQL~KLiDVikV~d--lt---~~~~V~REL 161 (349)
-+-..+..+....||.+..+.+.......+++|.++. +-+.++.+-+++...+|+..... |+ ..|-++|.|
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~RpL 87 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRPL 87 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCCcC
Confidence 3556678889999999999999887777789999874 34667888888888887543110 00 133344433
Q ss_pred e-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCC
Q 018896 162 M-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGD 202 (349)
Q Consensus 162 a-----------LIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~ 202 (349)
- ++||..... ..=-+.|.|+++++.++.++|+.-|.
T Consensus 88 ~~~~~f~r~~G~~v~V~~~~~-----~~~~~~~~G~L~~~~~~~i~l~~~~~ 134 (154)
T PRK00092 88 KKARDFRRFIGREVKVKLYEP-----IDGRKKFQGILLAVDGETVTLEVEGK 134 (154)
T ss_pred CCHHHHHHhCCCeEEEEEEcc-----cCCceEEEEEEEEeeCCEEEEEECCC
Confidence 3 255543210 01125688999999999999998765
No 293
>PRK05925 aspartate kinase; Provisional
Probab=64.68 E-value=1.4e+02 Score=31.01 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=70.7
Q ss_pred cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC---hHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEE
Q 018896 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT---ERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK 165 (349)
Q Consensus 89 kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd---d~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIK 165 (349)
.+|.+.||.+.|.+.|+||+.++... .-++++++.+ ++.++.+.+.+.++ -+++ ++..+++|-
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~~----~sis~~i~~~~~~~~~~~~l~~~l~~~---~~i~-------~~~~~a~Vs 376 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQN----LGVYFTIDDDDISEEYPQHLTDALSAF---GTVS-------CEGPLALIT 376 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEeccC----CEEEEEEechhccHHHHHHHHHHhcCC---ceEE-------EECCEEEEE
Confidence 57889999999999999999885331 2366666643 22344444444442 1222 556888888
Q ss_pred EeCCCC----CHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 018896 166 LNGDTS----TWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (349)
Q Consensus 166 V~~~~~----~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~ 214 (349)
|--..- --..++......+-+|.-++....-|-+.=+.+..+..++.|.
T Consensus 377 vVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~~~is~vV~~~d~~~av~~LH 429 (440)
T PRK05925 377 MIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSDMALNLVVNEELAVAVTELLH 429 (440)
T ss_pred EeCCCcccccHHHHHHHHHhhCCCCEEEEECCCceEEEEEehHHHHHHHHHHH
Confidence 854321 1234555556666788888776666666656666666666554
No 294
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.19 E-value=31 Score=25.77 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=31.3
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
.+.||++.|+...|.+.++++ +..+.+ +-.++++|+.+ ..++.++.|.
T Consensus 11 ~~~~gv~~~~~~~L~~~~i~~--i~~~~s--~~~is~vv~~~--d~~~av~~LH 58 (63)
T cd04920 11 RSLLHKLGPALEVFGKKPVHL--VSQAAN--DLNLTFVVDED--QADGLCARLH 58 (63)
T ss_pred ccCccHHHHHHHHHhcCCceE--EEEeCC--CCeEEEEEeHH--HHHHHHHHHH
Confidence 478999999999998865444 444443 23588888743 3444444443
No 295
>PRK08210 aspartate kinase I; Reviewed
Probab=63.95 E-value=13 Score=37.13 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=35.6
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
..++||++.|+...|++.|+||.+.+. .+..+++++..++ .++.++.|+|
T Consensus 349 ~~~~~g~~~~i~~aL~~~~I~i~~~~~----s~~~is~vv~~~~--~~~a~~~Lh~ 398 (403)
T PRK08210 349 MAGVPGVMAKIVTALSEEGIEILQSAD----SHTTIWVLVKEED--MEKAVNALHD 398 (403)
T ss_pred cCCCccHHHHHHHHHHhCCCCEEEEec----CCCEEEEEEcHHH--HHHHHHHHHH
Confidence 457999999999999999999986332 2335788887433 4455555544
No 296
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=63.63 E-value=5.4 Score=33.57 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=30.1
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhccccccccee
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
.+.+++++=.++||+.+.|++.+|.-|-||..+
T Consensus 2 ~~avITV~GkDr~GIva~is~vLAe~~vNIldi 34 (90)
T COG3830 2 MRAVITVIGKDRVGIVAAVSRVLAEHGVNILDI 34 (90)
T ss_pred ceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEH
Confidence 467899999999999999999999999999765
No 297
>PRK14424 acylphosphatase; Provisional
Probab=63.63 E-value=20 Score=29.80 Aligned_cols=45 Identities=7% Similarity=0.075 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|..++ |.|-...+.++-|++.|++++|+.|++.|+.
T Consensus 21 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~ 67 (94)
T PRK14424 21 GFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRH 67 (94)
T ss_pred chHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 56888999999776 5677778889999999999999999999985
No 298
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=62.75 E-value=23 Score=27.59 Aligned_cols=55 Identities=5% Similarity=0.076 Sum_probs=46.6
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~---~sltIEvTG~~~KIdafi~~L~~ 215 (349)
++.+.|.++.+.-..|+..+..-||+|.|... +..+|+....-.++..|...|+.
T Consensus 3 i~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs 60 (79)
T cd03710 3 IEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLT 60 (79)
T ss_pred EEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHh
Confidence 35677888888899999999999999999866 46889999998888888888764
No 299
>PRK14431 acylphosphatase; Provisional
Probab=62.30 E-value=28 Score=28.44 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+ ++.+++.|+++.|++|++.|+.
T Consensus 16 GFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 16 GFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred eEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc
Confidence 35788889999776 55666644 7999999999999999999986
No 300
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=61.62 E-value=29 Score=25.20 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=33.1
Q ss_pred CHHHHHHHHHhcCcEEEEecCC--EEEEEEeCChhHHHHHHHHh
Q 018896 172 TWPEIMWLVDIFRAKVVDISEH--ALTIEVTGDPGKMVAVQRNL 213 (349)
Q Consensus 172 ~R~EI~~la~iFrAkIVDvs~~--sltIEvTG~~~KIdafi~~L 213 (349)
...-|.+|-+.++++ +.+.++ .-++.++|+++.++...+.+
T Consensus 18 ~G~~i~~I~~~t~~~-I~i~~~~~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 18 KGSNIKEIEEETGVK-IQIPDDDERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp GGHHHHHHHHHHTSE-EEEESTTEEEEEEEEESHHHHHHHHHHH
T ss_pred CCCcHHHhhhhcCeE-EEEcCCCCcEEEEEEeCHHHHHHHHhhC
Confidence 344788999999999 666654 77999999999999887753
No 301
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=61.48 E-value=17 Score=36.83 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=36.2
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
+.++||++.||...+++.|+||+.++. ++ .-++++++.++ .++..+-|++
T Consensus 388 ~~~~~g~~a~if~~La~~~Inv~~i~~--se--~~Is~vV~~~d--~~~a~~~Lh~ 437 (441)
T TIGR00657 388 MKSAPGVASKIFEALAQNGINIEMISS--SE--INISFVVDEKD--AEKAVRLLHN 437 (441)
T ss_pred CCCCCchHHHHHHHHHHCCCCEEEEEe--cC--CcEEEEEeHHH--HHHHHHHHHH
Confidence 568999999999999999999999982 22 34777887433 3444444443
No 302
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.45 E-value=6.5 Score=29.60 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.3
Q ss_pred EEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+++.+.++||-|.+++.+++. |-||-.+.
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~ 29 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFH 29 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEE
Confidence 467889999999999999999 99987653
No 303
>PRK11898 prephenate dehydratase; Provisional
Probab=60.95 E-value=9.4 Score=37.09 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.1
Q ss_pred cceeEEEEEEeCC-Cchhhhhhhhhccccccccee
Q 018896 312 LRSHTLSMLVNNT-PGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 312 ~~~~~ls~~V~n~-~Gvl~rv~glf~~RgyNi~sl 345 (349)
..+..|-+.+.|. ||.|.++-+.|+.+|.|+-.|
T Consensus 194 ~~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~I 228 (283)
T PRK11898 194 GDKTSLVLTLPNNLPGALYKALSEFAWRGINLTRI 228 (283)
T ss_pred CCeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeE
Confidence 3467788888775 999999999999999998776
No 304
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.41 E-value=5.7 Score=27.39 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=24.2
Q ss_pred EeCCCchhhhhhhhhcccccccceeee
Q 018896 321 VNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 321 V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+.|.||++.++...+++.|-||+.++-
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 578999999999999999999998654
No 305
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=60.21 E-value=37 Score=35.96 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=49.7
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-----E-EEEEEeCChHHHHHHHHHHhcCeeeeEEE
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-----L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-----i-iTIVV~gdd~~veQLiKQL~KLiDVikV~ 149 (349)
..+++--++ +|.|.++..+|...++||.-|.--++.... . +.+-++++...++++++-|.+-.....+.
T Consensus 40 ~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (457)
T TIGR01269 40 NQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFISGIN 114 (457)
T ss_pred EEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhcccccc
Confidence 344444333 999999999999999999998877654222 2 55556677888999999988766544333
No 306
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=60.12 E-value=48 Score=28.62 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=70.8
Q ss_pred CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc--CeeeeEEEecCCchhhhhheeeEE
Q 018896 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK--LVNVIKVEDISNEPHVERELMLIK 165 (349)
Q Consensus 88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K--LiDVikV~dlt~~~~V~RELaLIK 165 (349)
|+|=-..||=..+..-||+|+ +. .....+...++|+|.+ .+. +.|.-|-++
T Consensus 20 ~rP~p~~~IE~Am~e~~~~v~-----p~----------ksak~QalevIk~L~~~~~ip------------I~ra~m~l~ 72 (125)
T PF09377_consen 20 NRPYPPTRIEKAMKEAHFSVD-----PN----------KSAKQQALEVIKKLKEKQIIP------------IKRAKMRLR 72 (125)
T ss_dssp TBTT-HHHHHHHHHHTTS-SS-----TT----------S-HHHHHHHHHHHHTT--TS--------------EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhCCcccC-----CC----------CCHHHHHHHHHHHHHHhCCCc------------eeeeeEEEE
Confidence 444555666666666676643 10 1345667778888876 443 678889999
Q ss_pred EeCCCCCHHHHHHHHHhcCcEEEE--ecCCEEEEEEeCChhHHHHHHHHhc
Q 018896 166 LNGDTSTWPEIMWLVDIFRAKVVD--ISEHALTIEVTGDPGKMVAVQRNLS 214 (349)
Q Consensus 166 V~~~~~~R~EI~~la~iFrAkIVD--vs~~sltIEvTG~~~KIdafi~~L~ 214 (349)
|.++.+....+......+.+.+.+ .+.++..+.+.=+|+.-+.|.+.++
T Consensus 73 v~ip~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~pg~~r~l~~~v~ 123 (125)
T PF09377_consen 73 VTIPSKYAKKVKDKLLKLGAKIEEEEQNDGSWEMVFLIDPGLYRELDELVN 123 (125)
T ss_dssp EEEBCCCHHHHHHHHHHHSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHhhcEeeecccCCCeEEEEEEECCcchHHHHHHHc
Confidence 999999999998888888887743 4788888888888888888887765
No 307
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=59.67 E-value=10 Score=31.37 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=23.1
Q ss_pred hcCcEEEEecCC-EEEEEEeCChhHHHHHHHHhcc
Q 018896 182 IFRAKVVDISEH-ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 182 iFrAkIVDvs~~-sltIEvTG~~~KIdafi~~L~~ 215 (349)
+..+++.+.+.+ -++||+.++++||++|++.|++
T Consensus 52 ih~~~~~~l~~~lPvvIe~id~~eki~~~l~~l~~ 86 (101)
T PF02641_consen 52 IHSARLLELSDDLPVVIEFIDTEEKIEAFLPELKE 86 (101)
T ss_dssp ---------TTS-EEEEEEEEEHHHHHHHHHHHCT
T ss_pred ccccchhhhcCCCCEEEEEEcCHHHHHHHHHHHHH
Confidence 344677777776 8899999999999999999985
No 308
>PRK00341 hypothetical protein; Provisional
Probab=59.63 E-value=66 Score=26.58 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=50.6
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcce--eeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeE
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNI--ESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIK 147 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNI--eSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVik 147 (349)
.+.+.|.-.+.++..+.|..++.+.. .. +++++-++....+ +|+.+. .++++++.|=+.|.+.-.|.-
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~m 89 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVHM 89 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence 48899999999999999999998664 55 3444445544444 555544 477889999999988888753
No 309
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=59.12 E-value=89 Score=24.78 Aligned_cols=70 Identities=27% Similarity=0.340 Sum_probs=52.7
Q ss_pred EEEEEEcCc-ccHHHHHHHHHhccCcc-eeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 81 TISVFVGDE-SGIINRIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 81 tISIlVeNk-PGVL~RItGLFsRRGyN-IeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
+|++.-+.+ +++..|++.+--...=- +.++.+-..++.-+-.+++.|+-+.++++.+.|.++-.|..+..
T Consensus 3 ~it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~ClEvivv~G~~~~I~~l~~~l~~~kGV~~~~l 74 (78)
T PF08753_consen 3 TITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNCLEVIVVRGPADRIKELAEKLRSLKGVKHVKL 74 (78)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCeEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 455555544 78999999998776644 44555555555455677899999999999999999999988763
No 310
>PLN02551 aspartokinase
Probab=59.08 E-value=21 Score=37.88 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=40.1
Q ss_pred EEEEE--EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 81 TISVF--VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 81 tISIl--VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
.|++. ..++||++.|+...|++.|+||.-++.|.++. .++++|+.++ .++.++.|+
T Consensus 447 iISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSei--nIS~vV~~~d--~~~Av~aLH 504 (521)
T PLN02551 447 IISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKV--NISLIVNDDE--AEQCVRALH 504 (521)
T ss_pred EEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCc--EEEEEEeHHH--HHHHHHHHH
Confidence 34444 34689999999999999999999999777532 4888887442 344444443
No 311
>PRK06291 aspartate kinase; Provisional
Probab=58.40 E-value=18 Score=37.28 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=43.1
Q ss_pred EEEEEE---cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcC
Q 018896 81 TISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (349)
Q Consensus 81 tISIlV---eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KL 142 (349)
.|++.- .+++|++.|+...+++.|+||..++.+.++. .++++|+.++ .++.++.|++-
T Consensus 400 ~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~--~Is~vV~~~d--~~~av~~Lh~~ 460 (465)
T PRK06291 400 VVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEV--NISFVVDEED--GERAVKVLHDE 460 (465)
T ss_pred EEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccC--eEEEEEeHHH--HHHHHHHHHHH
Confidence 355544 3689999999999999999999888777643 4888887433 56666666554
No 312
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=56.63 E-value=9 Score=40.16 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=31.1
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
..++|-+.-+++||++.+|+.++++.+.||.+..++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~ 486 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLG 486 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEec
Confidence 447777777899999999999999999999988764
No 313
>PRK07334 threonine dehydratase; Provisional
Probab=55.34 E-value=13 Score=37.50 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=31.6
Q ss_pred eeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
+..|.+...|+||+|+.|+.+++.-+.||.++..
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~ 359 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSH 359 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEE
Confidence 5799999999999999999999999999998864
No 314
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=53.89 E-value=14 Score=38.97 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=33.3
Q ss_pred CCCCccceeEEEEEEeCCCchhhhhhhhhccccccccee
Q 018896 307 EDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 307 ~~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
.+..+..+..|-+.+.|+||.|.++-..|+.+|.|+-.|
T Consensus 24 ~~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThI 62 (464)
T TIGR01270 24 DEEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHL 62 (464)
T ss_pred ccCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEE
Confidence 455666677788888999999999999999999998766
No 315
>PRK09181 aspartate kinase; Validated
Probab=53.31 E-value=44 Score=35.08 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=40.1
Q ss_pred EEEEEEcC--cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 81 TISVFVGD--ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 81 tISIlVeN--kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
.|++.-++ +||+..|+...+++.|+||..++.+.++. .++++|+.+ ..++.++.|+
T Consensus 404 ~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~--~Is~vV~~~--d~~~Av~~lH 461 (475)
T PRK09181 404 IVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMRQV--NMQFVVDED--DYEKAICALH 461 (475)
T ss_pred EEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcc--eEEEEEeHH--HHHHHHHHHH
Confidence 45554443 89999999999999999999998776543 478888744 2344444443
No 316
>PRK08841 aspartate kinase; Validated
Probab=53.17 E-value=36 Score=34.62 Aligned_cols=59 Identities=10% Similarity=0.203 Sum_probs=43.8
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCee
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVN 144 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiD 144 (349)
-.+++.-++.||++.|+...+++.|+||.+++.+ + -.+.++|+. +..++.++.|++-..
T Consensus 319 a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~--~~is~vv~~--~~~~~av~~lH~~f~ 377 (392)
T PRK08841 319 SLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P--QSSMLVLDP--ANVDRAANILHKTYV 377 (392)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C--cEEEEEEeH--HHHHHHHHHHHHHHc
Confidence 4678888889999999999999999999887742 2 337777763 445666666665443
No 317
>PRK14631 hypothetical protein; Provisional
Probab=53.16 E-value=1.9e+02 Score=26.70 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=72.1
Q ss_pred cHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC----------------------hHHHHHHHHHHhcCeeeeEE
Q 018896 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----------------------ERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 91 GVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd----------------------d~~veQLiKQL~KLiDVikV 148 (349)
-+-..+.-+....||-+..+.+.......+++|.++.. -+..+.+-++|..++|+...
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~d~ 88 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHDP 88 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhccccc
Confidence 35567778889999999999988777666788888731 25677888899999997432
Q ss_pred Ee----cC-Cchhhhhhe-----------eeEEEeCC--CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCC
Q 018896 149 ED----IS-NEPHVEREL-----------MLIKLNGD--TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGD 202 (349)
Q Consensus 149 ~d----lt-~~~~V~REL-----------aLIKV~~~--~~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~ 202 (349)
.. |. ..|-++|.| -++||+.. ...| +.|.|++.++. .+.+++++.|.
T Consensus 89 i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~~~~~~-------k~~~G~L~~v~~~~~~v~l~~~~~ 155 (174)
T PRK14631 89 ISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENR-------RKFQAKLLAVDLENEEIQVEVEGK 155 (174)
T ss_pred CCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEecccCCc-------eEEEEEEEEeecCCCEEEEEEcCC
Confidence 10 00 133344443 24555542 2232 57999999999 99999998754
No 318
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.82 E-value=1.2e+02 Score=24.26 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=51.8
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhh
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V 157 (349)
+.+.|..--|||.|-+.+..+. .+.||.-+.=--.. +.+.+-+.+.-.+...++++++|+++= ..+.|+++.+..
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~~~~~~~~~l~~~l~~~g--~~~~dls~ne~~ 77 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQVPDADLDELKERLDALG--YPYQEETDNPAY 77 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEEeChHHHHHHHHHHHHcC--CCeEECCCCHHH
Confidence 5678888889999999999994 47888877765433 344443333322237889999998864 567777776543
No 319
>PRK09034 aspartate kinase; Reviewed
Probab=52.40 E-value=35 Score=35.21 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=40.8
Q ss_pred EEEE---EEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 81 TISV---FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 81 tISI---lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
.|++ -..+.||++.|+...+++.|+||.-++.+.++ ..++++|..++ .++.++.|++
T Consensus 387 ~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se--~~Is~vV~~~d--~~~av~~LH~ 446 (454)
T PRK09034 387 IIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE--ISIMFGVKNED--AEKAVKAIYN 446 (454)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc--ceEEEEEcHHH--HHHHHHHHHH
Confidence 4555 34588999999999999999999999876543 34778886433 4444555543
No 320
>PLN02317 arogenate dehydratase
Probab=52.24 E-value=13 Score=38.29 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=29.8
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
.+..|-+.++|.||+|.++-..|+.||.|+-.|.
T Consensus 282 ~KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIE 315 (382)
T PLN02317 282 FKTSIVFSLEEGPGVLFKALAVFALRDINLTKIE 315 (382)
T ss_pred ccEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 3677888889999999999999999999987663
No 321
>PRK14638 hypothetical protein; Provisional
Probab=51.07 E-value=76 Score=28.39 Aligned_cols=101 Identities=12% Similarity=0.224 Sum_probs=69.4
Q ss_pred HHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC-----hHHHHHHHHHHhcCeeeeEEEe----cC-Cchhhhhhe
Q 018896 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL 161 (349)
Q Consensus 92 VL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd-----d~~veQLiKQL~KLiDVikV~d----lt-~~~~V~REL 161 (349)
+-..+..+....||-+..+..........++|.++.+ -+..+.+-++|.+++|+..... |. ..|-++|.|
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL 89 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPL 89 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCCCCC
Confidence 3345667788999999999988777777789988743 3567888899999988653310 00 133344433
Q ss_pred e-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC
Q 018896 162 M-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG 201 (349)
Q Consensus 162 a-----------LIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG 201 (349)
- .+||+... -+.|.|++.++..+.++++.-|
T Consensus 90 ~~~~~f~r~~G~~v~V~~~~---------~k~~~G~L~~~~~~~i~l~~~~ 131 (150)
T PRK14638 90 RGPKDYVRFTGKLAKIVTKD---------GKTFIGRIESFVDGTITISDEK 131 (150)
T ss_pred CCHHHHHHhCCCEEEEEECC---------CcEEEEEEEEEeCCEEEEEECC
Confidence 2 35665531 2678899999999999998644
No 322
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=50.59 E-value=44 Score=25.17 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCcEEEEecCCEEEEEEeCC-hhHHHHHHHHh
Q 018896 174 PEIMWLVDIFRAKVVDISEHALTIEVTGD-PGKMVAVQRNL 213 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~sltIEvTG~-~~KIdafi~~L 213 (349)
.-|-+|.+.|+++ +++.++. .+.++|+ ++++++..+.+
T Consensus 22 ~~ik~I~~~tg~~-I~i~~~g-~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 22 KTIKKIIEETGVK-IDIEDDG-TVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred hHHHHHHHHHCCE-EEeCCCC-EEEEEeCCHHHHHHHHHHh
Confidence 4688999999999 5777764 6999998 88998877765
No 323
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=50.57 E-value=52 Score=23.20 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=39.1
Q ss_pred eCCCCCHHHHHHHHHhcCcEEEEe--cCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 167 NGDTSTWPEIMWLVDIFRAKVVDI--SEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 167 ~~~~~~R~EI~~la~iFrAkIVDv--s~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.++-..-..+..+++.+++.|+|. +.+ +.+.+.=++++.+.|.+.|..
T Consensus 2 ~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~-V~~~v~v~~~~~~~f~~~l~~ 51 (56)
T PF09186_consen 2 SCDYSQYGKVERLLEQNGIEIVDEDYTDD-VTLTVAVPEEEVEEFKAQLTD 51 (56)
T ss_dssp EE-CCCHHHHHHHHHHTTTEEEEEEECTT-EEEEEEEECCCHHHHHHHHHH
T ss_pred EechhhHHHHHHHHHHCCCEEEcceecce-EEEEEEECHHHHHHHHHHHHH
Confidence 344457778999999999999876 555 999999999999999988764
No 324
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=50.25 E-value=15 Score=30.73 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=30.8
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
++|-|++.++..|+.|-||-++--+|||-+-++.
T Consensus 2 ~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamn 35 (86)
T COG3978 2 MQYQLDLSARFNPETLERVLRVTRHRGFRVCAMN 35 (86)
T ss_pred ceEEEeeeccCChHHHHHHHHHhhhcCeEEEEee
Confidence 5789999999999999999999999999886654
No 325
>PRK14639 hypothetical protein; Provisional
Probab=48.87 E-value=93 Score=27.54 Aligned_cols=94 Identities=16% Similarity=0.303 Sum_probs=65.1
Q ss_pred HHHhccCcceeeEeeeecCCCcEEEEEEeC----ChHHHHHHHHHHhcCeeeeEEEe----cC-Cchhhhhhe-------
Q 018896 98 GVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL------- 161 (349)
Q Consensus 98 GLFsRRGyNIeSLtVg~Ted~giiTIVV~g----dd~~veQLiKQL~KLiDVikV~d----lt-~~~~V~REL------- 161 (349)
-+....||-+..+.+.......+++|.++. +-+..+++-++|..++|+..... |. ..|-++|.|
T Consensus 5 p~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~f~ 84 (140)
T PRK14639 5 ALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKIEHFA 84 (140)
T ss_pred HhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCHHHHH
Confidence 356678999999998887777788998874 23668888889988888653211 00 133344443
Q ss_pred ----eeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 018896 162 ----MLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (349)
Q Consensus 162 ----aLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvT 200 (349)
-.+||+... -+.|.|+++++..+.+++|..
T Consensus 85 r~~G~~v~v~l~~---------~~~~~G~L~~~~~~~i~l~~~ 118 (140)
T PRK14639 85 KSIGELVKITTNE---------KEKFEGKIVSVDDENITLENL 118 (140)
T ss_pred HhCCCEEEEEECC---------CcEEEEEEEEEeCCEEEEEEc
Confidence 235665531 258999999999999999863
No 326
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=48.39 E-value=11 Score=27.17 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=23.2
Q ss_pred EeCCCchhhhhhhhhcccccccceee
Q 018896 321 VNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 321 V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+.+.||+++++...+++.|-||+.+.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 46889999999999999999997664
No 327
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.16 E-value=20 Score=28.33 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=24.2
Q ss_pred eEEEEEEeCCCchhhhhhhhhcccccccce
Q 018896 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQV 344 (349)
Q Consensus 315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~s 344 (349)
.++.+.+.++||-|.+++.+++ |-||-.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~ 29 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITE 29 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeE
Confidence 4688999999999999999999 567754
No 328
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=47.50 E-value=73 Score=25.33 Aligned_cols=53 Identities=21% Similarity=0.537 Sum_probs=34.5
Q ss_pred EEEEEcCcccHHHH----HHHHHhccCcc-eeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHH
Q 018896 82 ISVFVGDESGIINR----IAGVFARRGYN-IESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQL 139 (349)
Q Consensus 82 ISIlVeNkPGVL~R----ItGLFsRRGyN-IeSLtVg~Ted~giiTIVV~gdd-----~~veQLiKQL 139 (349)
..|.|..|||++.- |..-+...||+ ++++.++ ..+++.+++++ +.++.+.++|
T Consensus 3 ~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~-----k~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T TIGR00302 3 VEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTG-----KVIELTIEADSEEAVEREVEEMCEKL 65 (80)
T ss_pred EEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEE-----EEEEEEEcCCChhhHHHHHHHHHHHh
Confidence 45777789999854 55666667998 7776654 24777777644 3455555443
No 329
>PRK14632 hypothetical protein; Provisional
Probab=47.35 E-value=1.8e+02 Score=26.60 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=69.5
Q ss_pred HHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHHhcCeeeeEEEe----cC-Cchhhhhhe--
Q 018896 93 INRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL-- 161 (349)
Q Consensus 93 L~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd----d~~veQLiKQL~KLiDVikV~d----lt-~~~~V~REL-- 161 (349)
-..+.-+....||-+..+.+.. ....+++|.++.+ -+..+.+-++|..++|+..... |. ..|-+.|.|
T Consensus 11 ~~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~ 89 (172)
T PRK14632 11 ADMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLERPFFR 89 (172)
T ss_pred HHHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCC
Confidence 3456677889999999999874 3344688888743 3668889999999998654311 00 133344444
Q ss_pred ---------eeEEEeCCC-CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCC
Q 018896 162 ---------MLIKLNGDT-STWPEIMWLVDIFRAKVVDISEHALTIEVTGD 202 (349)
Q Consensus 162 ---------aLIKV~~~~-~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~ 202 (349)
=+|||+... ... ..=-+.|.|+++++.++.++|++-|.
T Consensus 90 ~~~f~r~iG~~V~V~l~~~~~~---~~g~k~~~G~L~~v~~~~i~l~~~~~ 137 (172)
T PRK14632 90 AEQMSPYVGRQIELTLIDPTPE---WPGRRKFRGELLAVEGDTVVLRPEGA 137 (172)
T ss_pred HHHHHHhCCCEEEEEEeccccc---cCCceEEEEEEEEEeCCEEEEEEcCc
Confidence 246665432 100 00126799999999999999998654
No 330
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=46.61 E-value=78 Score=32.53 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=32.4
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeee
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL 114 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~ 114 (349)
.+.-|-.+-+..||+|.+|..+|+-|.+|+.+|..-|
T Consensus 280 ~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP 316 (377)
T KOG2797|consen 280 FKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRP 316 (377)
T ss_pred ceeeEEEEeecCCchHHHHHHHHHhhhceeeeeeccc
Confidence 3445666689999999999999999999999999888
No 331
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=46.56 E-value=84 Score=24.99 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=50.8
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccC--cceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRG--YNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRG--yNIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVikV 148 (349)
..+.+.+...|.++....|..+|.+.- +.-..+...++....+ +|+.+. .+.+.++.+-+.|.+.-.|.-|
T Consensus 9 ~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vkmv 84 (85)
T PF04359_consen 9 CDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVKMV 84 (85)
T ss_dssp CEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred CcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEEEe
Confidence 458999999999999999999999964 3334444555544444 455443 4788899999999888777644
No 332
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=44.91 E-value=42 Score=32.43 Aligned_cols=121 Identities=21% Similarity=0.204 Sum_probs=81.0
Q ss_pred HHhccCcceeeEeeeecCCCc----------------------EEEEEEeC-ChHHHHHHHHHHhcCe-eeeEEEec---
Q 018896 99 VFARRGYNIESLAVGLNVDKA----------------------LFTIVVSG-TERVLRQVVEQLNKLV-NVIKVEDI--- 151 (349)
Q Consensus 99 LFsRRGyNIeSLtVg~Ted~g----------------------iiTIVV~g-dd~~veQLiKQL~KLi-DVikV~dl--- 151 (349)
...+.|+.+..|..-..+++. +++..+.+ .++.+++|.+.|..|- |.+-.-++
T Consensus 19 ~a~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~ 98 (223)
T COG2102 19 LALEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASE 98 (223)
T ss_pred HHHHcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhH
Confidence 345677888777666555441 14445566 4567889888887775 33333333
Q ss_pred ---CCchhhhhheeeEEEeC--CCCCHHHHHHHHHh-cCcEEEEecCCEEEEEEeCC---hhHHHHHHHHhccCCcE
Q 018896 152 ---SNEPHVERELMLIKLNG--DTSTWPEIMWLVDI-FRAKVVDISEHALTIEVTGD---PGKMVAVQRNLSKFGIK 219 (349)
Q Consensus 152 ---t~~~~V~RELaLIKV~~--~~~~R~EI~~la~i-FrAkIVDvs~~sltIEvTG~---~~KIdafi~~L~~fGIl 219 (349)
+.-+.+++|+.|.-+.- ...++.-+.++++. |++.||-|+..-+-=+.-|. .+-++.+..+=++|||=
T Consensus 99 yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi~ 175 (223)
T COG2102 99 YQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDESWLGRRIDREFLEELKSLNRRYGIH 175 (223)
T ss_pred HHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEEEeccCCChHHhCCccCHHHHHHHHHHHHhcCCC
Confidence 33567889999866532 23677778899999 99999999988776555554 35566666666778863
No 333
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=44.27 E-value=64 Score=24.68 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=44.2
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~---~sltIEvTG~~~KIdafi~~L~~ 215 (349)
+..+.|.++.+.-..|+.....-||+|++..+ +...|+....-.++-.|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~ 60 (79)
T cd01514 3 IMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRS 60 (79)
T ss_pred EEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhh
Confidence 45677888888888999999999999998865 55778888888887777777764
No 334
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=44.15 E-value=8.4 Score=23.54 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=10.5
Q ss_pred cccccceeeeec
Q 018896 9 QKLNLSHCFITK 20 (349)
Q Consensus 9 ~~~~~~~~~~~~ 20 (349)
|.|+||+|.|++
T Consensus 3 ~~Ldls~n~l~~ 14 (22)
T PF00560_consen 3 EYLDLSGNNLTS 14 (22)
T ss_dssp SEEEETSSEESE
T ss_pred cEEECCCCcCEe
Confidence 689999999984
No 335
>PRK14644 hypothetical protein; Provisional
Probab=43.41 E-value=1.4e+02 Score=26.39 Aligned_cols=95 Identities=8% Similarity=0.254 Sum_probs=63.1
Q ss_pred HHHhccCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecC-----Cchhhhhhee---------
Q 018896 98 GVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDIS-----NEPHVERELM--------- 162 (349)
Q Consensus 98 GLFsRRGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt-----~~~~V~RELa--------- 162 (349)
-+....||-+..+.........+++|.++ .+-+..+.+-++|..++|+.....-. ..|-+.|.|-
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~Idk~~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~f~r~~G 85 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVILNSRDLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMDYETDELENHIG 85 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEECCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCCCCHHHHHHhCC
Confidence 45677899999888876666667888886 34566888899999999875432100 1333444432
Q ss_pred -eEEEeC--CCCCHHHHHHHHHhcCcEEEEecCCEEEEEE
Q 018896 163 -LIKLNG--DTSTWPEIMWLVDIFRAKVVDISEHALTIEV 199 (349)
Q Consensus 163 -LIKV~~--~~~~R~EI~~la~iFrAkIVDvs~~sltIEv 199 (349)
.++|+. +.+.| +.|.|.++++.++.+++++
T Consensus 86 ~~v~V~l~~~~~~~-------~~~~G~L~~v~~~~i~l~~ 118 (136)
T PRK14644 86 EIIDVSLNKEVNKT-------DFITGELLENNPETITLKW 118 (136)
T ss_pred CeEEEEEccCcCCe-------EEEEEEEEEEeCCEEEEEE
Confidence 134433 22222 5788999999999999964
No 336
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=43.11 E-value=40 Score=37.54 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=41.5
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHHhcCeeeeEEEec
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL~KLiDVikV~dl 151 (349)
..+.||++.|+...|++.|+||..++.+.++. -++++|+..+ +.++.|-+.+..--..++|--+
T Consensus 406 m~~~~gv~arif~aL~~~~InI~~IsqgsSe~--~Is~vV~~~d~~~al~~LH~~f~~~~~~~~i~l~ 471 (819)
T PRK09436 406 MRTHPGIAAKFFSALGRANINIVAIAQGSSER--SISVVIDNDDATKALRACHQSFFLSDQVLDVFVI 471 (819)
T ss_pred cccCcCHHHHHHHHHHHCCCCEEEEEeccccc--eEEEEEcHHHHHHHHHHHHHHHhcccccccEEEE
Confidence 34789999999999999999999888776543 3666776432 3344444443222244555444
No 337
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=42.71 E-value=39 Score=27.18 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=34.0
Q ss_pred HHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcE-EEeecc
Q 018896 175 EIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIK-ELARTG 225 (349)
Q Consensus 175 EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIl-EiaRTG 225 (349)
-..++.+.+++ ..=.++||.+|.+.-++..++.|++.|.+ -+.-.+
T Consensus 46 ~~~~i~~~~~~-----~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 46 FVEQIRELTGG-----RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHTTT-----SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccccccccccc-----ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 45566666666 33456899999999999999999999944 444443
No 338
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=42.52 E-value=14 Score=28.05 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.2
Q ss_pred EeCCCchhhhhhhhhcccccccceee
Q 018896 321 VNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 321 V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
..|.||+++++-+.+++.|-||+-++
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~ 34 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLIN 34 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEE
Confidence 34789999999999999999999874
No 339
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=42.09 E-value=60 Score=24.84 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=44.4
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~--~sltIEvTG~~~KIdafi~~L~~ 215 (349)
++.+.|.++.+.-..|+.....-||+|++..+ +...|.....-.++..|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~ 59 (78)
T cd03713 3 IMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRS 59 (78)
T ss_pred EEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHh
Confidence 35677788878888999999999999998865 46778888888888888877765
No 340
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=41.28 E-value=1e+02 Score=24.17 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=38.6
Q ss_pred EEEEEEcC---cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHh
Q 018896 81 TISVFVGD---ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLN 140 (349)
Q Consensus 81 tISIlVeN---kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~ 140 (349)
.++|.|.| .+|.=.+++..+..+||.+....-.+... ..-+|... ++....++|.++|.
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~~~~~-~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEVGNAPSSD-ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeecCCCCCCC-CCEEEEECCCCHHHHHHHHHHCC
Confidence 35566666 57889999999999999996554333222 23444444 45566777776664
No 341
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=41.27 E-value=75 Score=24.49 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=44.7
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~--~sltIEvTG~~~KIdafi~~L~~ 215 (349)
++.+.|.++.+.-..|+.+...-||+|++... +...|+....-.++..|-..|+.
T Consensus 3 i~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~ 59 (78)
T cd03711 3 YLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPS 59 (78)
T ss_pred eEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHh
Confidence 45677888888888999999999999998754 57778888888888888777764
No 342
>PRK12378 hypothetical protein; Provisional
Probab=41.18 E-value=67 Score=30.97 Aligned_cols=123 Identities=15% Similarity=0.268 Sum_probs=73.8
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceee-Eeee-ecCCCcEEEEEEeCChHHHHHHHHH-HhcCeeeeEEEecCCchh
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIES-LAVG-LNVDKALFTIVVSGTERVLRQVVEQ-LNKLVNVIKVEDISNEPH 156 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeS-LtVg-~Ted~giiTIVV~gdd~~veQLiKQ-L~KLiDVikV~dlt~~~~ 156 (349)
-.+.++..|+....+.|-.+|.+.|-|+-. =+|. -=+..|+|++--. + .++++.. |+-=.+ .+|+.+++
T Consensus 94 iiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~kG~i~i~~~-~---~d~~~e~aieaGa~---~edv~~~~- 165 (235)
T PRK12378 94 VIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDHKGVFVFEGD-D---EDELLEALIDADVD---VEDVEEEE- 165 (235)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeecceEEEeCCC-C---HHHHHHHHHhCCCC---cccccccC-
Confidence 377888999999999999999999998732 1222 2334466666422 2 3334332 221011 12332221
Q ss_pred hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEE-----ecCCEEEEEEeCC-hhHHHHHHHHhccCC
Q 018896 157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD-----ISEHALTIEVTGD-PGKMVAVQRNLSKFG 217 (349)
Q Consensus 157 V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVD-----vs~~sltIEvTG~-~~KIdafi~~L~~fG 217 (349)
+ .+.|-++++.-..|.+-.+..+-.+.+ +-.++ +++++. .+++..|++.|+...
T Consensus 166 ---~--~~~i~t~p~~~~~v~~~L~~~g~~~~~sei~~~P~~~--v~l~~e~~~~~~~li~~Led~d 225 (235)
T PRK12378 166 ---G--TITVYTDPTDFHKVKKALEAAGIEFLVAELEMIPQNP--VELSGEDLEQFEKLLDALEDDD 225 (235)
T ss_pred ---C--eEEEEECHHHHHHHHHHHHHcCCCceeeEEEEecCCC--ccCCHHHHHHHHHHHHHHhcCC
Confidence 1 378888888777777777766655443 33333 455543 456778888887654
No 343
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=38.55 E-value=1.2e+02 Score=24.01 Aligned_cols=54 Identities=28% Similarity=0.570 Sum_probs=35.5
Q ss_pred EEEEEEcCcccHHH----HHHHHHhccCcc-eeeEeeeecCCCcEEEEEEeCC-----hHHHHHHHHHH
Q 018896 81 TISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQL 139 (349)
Q Consensus 81 tISIlVeNkPGVL~----RItGLFsRRGyN-IeSLtVg~Ted~giiTIVV~gd-----d~~veQLiKQL 139 (349)
.+.|.|..|||++. .|..-+...||+ ++++.++. .+++.++++ .+.++.|.++|
T Consensus 2 ~~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k-----~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T PRK05974 2 KVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGK-----YFELELEGESEEKAEADLKEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-----EEEEEEcCCchhhhHHHHHHHHHHh
Confidence 46788889999985 466667778997 77765542 477776653 23345555444
No 344
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=38.48 E-value=99 Score=25.83 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=45.3
Q ss_pred HHHHHHHhcCcEEEEecCC-----------EEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecCcCC
Q 018896 175 EIMWLVDIFRAKVVDISEH-----------ALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRREKLG 235 (349)
Q Consensus 175 EI~~la~iFrAkIVDvs~~-----------sltIEvTG~~~KIdafi~~L~~fG-IlEiaRTG~iAL~Rg~~~ 235 (349)
+|..+++..+.++..+++. .+.|+++|+-..|-.|++.|.... |+.+ ..+-|.|+..+
T Consensus 58 ~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i---~~~~l~~~~~~ 127 (144)
T PF04350_consen 58 DLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNI---ENLSLSRQSGG 127 (144)
T ss_dssp HHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEE---EEEEEEESSTT
T ss_pred HHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEE---eeeEEEecCCC
Confidence 6889999999999999877 688999999999999999999776 4433 34567776554
No 345
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=38.20 E-value=10 Score=22.25 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=8.5
Q ss_pred ccccccceeeeec
Q 018896 8 YQKLNLSHCFITK 20 (349)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (349)
-|+|+||+|.++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4789999999763
No 346
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=37.98 E-value=82 Score=24.27 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=44.4
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~--~sltIEvTG~~~KIdafi~~L~~ 215 (349)
++.+.|.++.+.-..|+..+..-||+|++... +...|+......++-.|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~ 59 (78)
T cd04097 3 IMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRS 59 (78)
T ss_pred EEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHh
Confidence 35677788888888999999999999998864 45777888888888888877765
No 347
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=37.60 E-value=2.5e+02 Score=24.01 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=49.9
Q ss_pred EEEEEEEEcCcccHHHHHHHHH-hccCcceeeEeeeecCCCcEEEEEEeC-ChHHHHHHHHHHhcCeeeeEEE
Q 018896 79 RHTISVFVGDESGIINRIAGVF-ARRGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLF-sRRGyNIeSLtVg~Ted~giiTIVV~g-dd~~veQLiKQL~KLiDVikV~ 149 (349)
.|.-|+.+.=+|--+++|-.-+ .=.|..|. ..+.+|.+.+|+.+ +...+-+=++++++|..|+.|.
T Consensus 6 ~hvsslVv~~~pe~l~av~~~L~~ip~~EV~-----~~d~~GKlVVVie~~~~~~l~~tie~i~nl~gVlav~ 73 (94)
T COG3062 6 WHVSSLVVQAKPERLSAVKTALLAIPGCEVY-----GEDAEGKLVVVIEAEDSETLLETIESIRNLPGVLAVS 73 (94)
T ss_pred eeEEEEeeecCHHHHHHHHHHHhcCCCcEee-----ccCCCceEEEEEEcCchHHHHHHHHHHhcCCceeEEE
Confidence 7899999999999999986544 44454443 23333888888875 4566778889999999999987
No 348
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=37.22 E-value=91 Score=33.06 Aligned_cols=70 Identities=11% Similarity=0.258 Sum_probs=54.8
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
|.|+-+|+-|....+..++.-|++|...+.+ ...++|-+-+. =+-..++.++..|+.+-.|-.|..+.--
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEi---d~~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~m 73 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEI---DPIGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPWM 73 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceee---cCCCeEEEeccccCHHHHHHHHHHHhcCCCccceeeecCC
Confidence 6789999999999999999999999998877 33456666554 3567788888888888777666655443
No 349
>PRK00110 hypothetical protein; Validated
Probab=37.21 E-value=1.6e+02 Score=28.52 Aligned_cols=122 Identities=11% Similarity=0.209 Sum_probs=74.1
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceee-Eeee-ecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhh
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIES-LAVG-LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeS-LtVg-~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V 157 (349)
-.+.++..|+....+.|-.+|.+.|-|+-. =+|. -=+..|+|.+-....|+.++.++.. -..|| ..++
T Consensus 97 iiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i~~~~~~~d~~~e~aiea--GaeDv------~~e~-- 166 (245)
T PRK00110 97 IIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVIVIEPLDEDELMEAALEA--GAEDV------ETDD-- 166 (245)
T ss_pred EEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEEEeCCCCHHHHHHHHHhC--CCCEe------eccC--
Confidence 478889999999999999999999998732 2222 2344566666422123333333331 22232 1111
Q ss_pred hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEE-----ecCCEEEEEEeCC-hhHHHHHHHHhccCC
Q 018896 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD-----ISEHALTIEVTGD-PGKMVAVQRNLSKFG 217 (349)
Q Consensus 158 ~RELaLIKV~~~~~~R~EI~~la~iFrAkIVD-----vs~~sltIEvTG~-~~KIdafi~~L~~fG 217 (349)
+ .+.|-++++.-..|.+-.+.++-++.+ +..+ ++++++. .+++..|++.|+...
T Consensus 167 --~--~~~i~~~p~~~~~v~~~L~~~g~~~~~sei~~~P~~--~v~l~~e~~~~~~~li~~Led~d 226 (245)
T PRK00110 167 --E--SFEVITAPEDFEAVRDALEAAGLEAESAEVTMIPQN--TVELDEETAEKLLKLIDALEDLD 226 (245)
T ss_pred --C--eEEEEECHHHHHHHHHHHHHcCCCeeeeEEEEecCC--CcccCHHHHHHHHHHHHHHhcCC
Confidence 1 378888888777777777766665543 3333 3455544 456777888887665
No 350
>PLN02828 formyltetrahydrofolate deformylase
Probab=36.94 E-value=1.7e+02 Score=28.83 Aligned_cols=32 Identities=22% Similarity=0.126 Sum_probs=25.7
Q ss_pred HHHHHhccCcceeeEeeeecCCCcE--EEEEEeC
Q 018896 96 IAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG 127 (349)
Q Consensus 96 ItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~g 127 (349)
|++.+..+|.||.....-...+.++ |++.++.
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~ 34 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIF 34 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEe
Confidence 5789999999999988776666675 6777763
No 351
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=36.89 E-value=85 Score=24.61 Aligned_cols=55 Identities=5% Similarity=0.027 Sum_probs=43.2
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEec--CCE--EEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--EHA--LTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs--~~s--ltIEvTG~~~KIdafi~~L~~ 215 (349)
++.+.|.++.+.-..|+.....-||+|++.. +++ .+|+..=.-.++..|-..|+.
T Consensus 3 i~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs 61 (80)
T cd04098 3 IYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRV 61 (80)
T ss_pred EEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHh
Confidence 4678888888888899999999999999543 345 677777777777777777765
No 352
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=36.71 E-value=33 Score=24.07 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.9
Q ss_pred EeCCCchhhhhhhhhcccccccceee
Q 018896 321 VNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 321 V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
..+.||++.++.+.+++.|-|++.++
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45779999999999999999998875
No 353
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.70 E-value=18 Score=28.35 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=23.9
Q ss_pred EeCCCchhhhhhhhhcccccccceee
Q 018896 321 VNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 321 V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+.+.||++.+|-..|++.|-||+-++
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 57889999999999999999999875
No 354
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=36.25 E-value=90 Score=24.40 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=44.3
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~--~sltIEvTG~~~KIdafi~~L~~ 215 (349)
++.+.|.++.+.-..|+..+..-||+|++..+ +...|+..-.-.++..|-..|+.
T Consensus 5 i~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs 61 (85)
T smart00838 5 IMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRS 61 (85)
T ss_pred EEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHH
Confidence 45677788878888999999999999998865 46677777888888888877764
No 355
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=35.88 E-value=1.3e+02 Score=23.02 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCe
Q 018896 92 IINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLV 143 (349)
Q Consensus 92 VL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLi 143 (349)
+|++++.-|. -.+||-.=.+....+. |.|.+-+.|++..+++.+++|...-
T Consensus 18 iis~l~~~~~-v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~ 70 (76)
T PF09383_consen 18 IISQLIREFG-VDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQG 70 (76)
T ss_dssp HHHHHHHHHT--EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-CCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCC
Confidence 4544443332 2345544444444443 5689999999999999999998763
No 356
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=35.63 E-value=2.5e+02 Score=23.17 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=49.6
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhcc-CcceeeEeeeec-CCCcEEEEEEeC-ChHHHHHHHHHHhcCeeeeEEE
Q 018896 79 RHTISVFVGDESGIINRIAGVFARR-GYNIESLAVGLN-VDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRR-GyNIeSLtVg~T-ed~giiTIVV~g-dd~~veQLiKQL~KLiDVikV~ 149 (349)
.|.=|+.|+=+|.-+..|..-+... |..|. -. .+.|++-+|+.+ +.+.+-..+++|+.|..|+.+.
T Consensus 5 ~hIsSlVV~~~Pe~~~~V~~~l~~ipg~Evh-----~~d~~~GKiVVtiE~~~~~~~~~~i~~I~~l~GVlsa~ 73 (87)
T PRK10553 5 WQVCSLVVQAKSERISDISTQLNAFPGCEVA-----VSDAPSGQLIVVVEAEDSETLLQTIESVRNVEGVLAVS 73 (87)
T ss_pred ceEeEEEEEeChHHHHHHHHHHHcCCCcEEE-----eecCCCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEE
Confidence 6888999999999999988766653 33333 33 345787777764 4566777789999999999987
No 357
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.94 E-value=1.5e+02 Score=27.98 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHhcCcEEEEecCC---------EEEEEEeCChhHHHHHHHHhccCCcEEE
Q 018896 171 STWPEIMWLVDIFRAKVVDISEH---------ALTIEVTGDPGKMVAVQRNLSKFGIKEL 221 (349)
Q Consensus 171 ~~R~EI~~la~iFrAkIVDvs~~---------sltIEvTG~~~KIdafi~~L~~fGIlEi 221 (349)
....+|.++++.|+|-|...+.. +..+.+-=.+++.+.|++.|+..|-+.-
T Consensus 63 ~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~ 122 (262)
T PF14257_consen 63 KAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTS 122 (262)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceee
Confidence 56779999999999999888765 4566666688999999999998885443
No 358
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=34.46 E-value=75 Score=33.23 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=35.1
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
..+.||+.+|+..-+++.++||..++ + ..--|.++|++++ .++.++-|+
T Consensus 393 m~~~~gvaa~~f~aL~~~~ini~~is---s-Se~~Is~vV~~~~--~~~av~~LH 441 (447)
T COG0527 393 MRSNPGVAARIFQALAEENINIIMIS---S-SEISISFVVDEKD--AEKAVRALH 441 (447)
T ss_pred cccCcCHHHHHHHHHHhCCCcEEEEE---c-CCceEEEEEccHH--HHHHHHHHH
Confidence 56889999999999999999999998 1 1123777776433 344444443
No 359
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=34.06 E-value=18 Score=27.44 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.4
Q ss_pred CCCchhhhhhhhhcccccccceee
Q 018896 323 NTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 323 n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+.||++++++...+..|.||--++
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE
Confidence 599999999999999999987654
No 360
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=33.97 E-value=2.1e+02 Score=24.49 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEEeC-CCCCHHHH-HHHHHhcCcEEEEecCCEEEEEEeCC
Q 018896 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNG-DTSTWPEI-MWLVDIFRAKVVDISEHALTIEVTGD 202 (349)
Q Consensus 128 dd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV~~-~~~~R~EI-~~la~iFrAkIVDvs~~sltIEvTG~ 202 (349)
++..+.+|-.|| =.|||.=|||-- ..+.|.+| ..|++.-+|..|++-...+++--.|.
T Consensus 29 te~vi~Ei~~aL-----------------~~reLIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG~~~vlyr~~~ 88 (97)
T COG1534 29 TEGVIKEIDRAL-----------------EARELIKVKVLQNAREDKKEIAEALAEETGAELVQVIGKTLVLYRESK 88 (97)
T ss_pred CHHHHHHHHHHH-----------------HhCCcEEEEeeccchhhHHHHHHHHHHHhCCEEeeeeeeEEEEEecCc
Confidence 566666666666 345655444432 33556654 56888999999999999999876443
No 361
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=33.50 E-value=40 Score=30.75 Aligned_cols=37 Identities=32% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCccceeEEEEEEeCCCchhhhhhhhhccccccccee
Q 018896 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 309 ~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
.-+-+..||++.++++-|.|++|--..|+++-||=++
T Consensus 67 m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI 103 (150)
T COG4492 67 MLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTI 103 (150)
T ss_pred cccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEE
Confidence 3445678999999999999999999999999998655
No 362
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.24 E-value=24 Score=27.61 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.6
Q ss_pred EeCCCchhhhhhhhhcccccccceee
Q 018896 321 VNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 321 V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+.+.||++.+|-+.|++.|-|++-+.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~ 36 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS 36 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 56889999999999999999999774
No 363
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=32.16 E-value=32 Score=36.17 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=30.3
Q ss_pred eeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
.|+|-+.-+++||++.+|+.+++..+.||.+..++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~ 485 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLG 485 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEee
Confidence 37777777899999999999999999999887764
No 364
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=31.95 E-value=88 Score=24.11 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=44.0
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CE--EEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HA--LTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~--~s--ltIEvTG~~~KIdafi~~L~~ 215 (349)
++.+.|.++.+.-..|+..+..-||+|++... ++ ..|...-.-.++..|...|+.
T Consensus 3 i~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs 61 (80)
T cd04096 3 IYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRS 61 (80)
T ss_pred EEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHh
Confidence 45678888888888999999999999997754 23 777777778888888777765
No 365
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=30.83 E-value=1.2e+02 Score=31.78 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHhccC--cceeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHHhcC
Q 018896 90 SGIINRIAGVFARRG--YNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKL 142 (349)
Q Consensus 90 PGVL~RItGLFsRRG--yNIeSLtVg~Te-d~giiTIVV~-gdd~~veQLiKQL~KL 142 (349)
.|+|+|+....-..| |.|+.+.+|... +++.-+|.|. .+++.+++|+.||.++
T Consensus 15 s~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~~~~~l~~Il~~l~~~ 71 (407)
T TIGR00300 15 SLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSARDHQHLEEILTELIDL 71 (407)
T ss_pred hhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecCCHHHHHHHHHHHHHc
Confidence 689999998887766 999999999766 4566777676 4678899999998775
No 366
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=30.37 E-value=86 Score=29.93 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEe
Q 018896 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 89 kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~d 150 (349)
.|.-|..|...+...||.|++..+.-.... .+. ++ .+-+.+.+++..|+.+.||.+|.+
T Consensus 172 ~p~~~~~v~~~L~~~g~~i~~~e~~~~P~~-~v~--l~~e~~~~~~~lie~Lee~dDV~~Vy~ 231 (234)
T PF01709_consen 172 DPSDLSAVKKALEKKGYEIESAELEYIPNN-PVE--LSEEDAEKVEKLIEALEELDDVQNVYH 231 (234)
T ss_dssp EGGGHHHHHHHHHHTT---SEEEEEEEESS--EE----HHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEEEeCCC-Ccc--cCHHHHHHHHHHHHHHhCCcCcceeee
Confidence 588999999999999999987665533222 122 23 234567788889999999999874
No 367
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=30.12 E-value=2.9e+02 Score=26.39 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.2
Q ss_pred EEEEEEeCChhHHHHHHHHhccCCcE
Q 018896 194 ALTIEVTGDPGKMVAVQRNLSKFGIK 219 (349)
Q Consensus 194 sltIEvTG~~~KIdafi~~L~~fGIl 219 (349)
-++|+.+|.+.-++..++.|++.|.+
T Consensus 240 d~vid~~g~~~~~~~~~~~l~~~G~~ 265 (355)
T cd08230 240 DLIIEATGVPPLAFEALPALAPNGVV 265 (355)
T ss_pred CEEEECcCCHHHHHHHHHHccCCcEE
Confidence 48999999988899999999999954
No 368
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=29.97 E-value=23 Score=34.38 Aligned_cols=21 Identities=33% Similarity=0.814 Sum_probs=16.0
Q ss_pred ccccEEEEecCCCCCCccccc
Q 018896 20 KSCDFVLFWRPPSQGRTSFSS 40 (349)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~ 40 (349)
++.|.+|||-||.-|.|++..
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp S---EEEEESSTTSSHHHHHH
T ss_pred CCcceEEEECCCccchhHHHH
Confidence 357899999999999999864
No 369
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=29.87 E-value=1.3e+02 Score=21.79 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.1
Q ss_pred HHHHHHHhcCcEEEEecCC---EEEEEEeCChhHHHHHHHHh
Q 018896 175 EIMWLVDIFRAKVVDISEH---ALTIEVTGDPGKMVAVQRNL 213 (349)
Q Consensus 175 EI~~la~iFrAkIVDvs~~---sltIEvTG~~~KIdafi~~L 213 (349)
-|.+|.+.++++| ++.+. .=.|.++|+++.+....+.+
T Consensus 21 ~i~~i~~~~g~~I-~i~~~~~~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 21 NIRKIMEETGVKI-RFPDPGSKSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred cHHHHHHHhCCEE-EcCCCCCCCCEEEEEcCHHHHHHHHHHh
Confidence 5778888999995 45442 45679999999998887765
No 370
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=29.75 E-value=79 Score=25.07 Aligned_cols=55 Identities=9% Similarity=0.168 Sum_probs=45.1
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEec---CCEEEEEEeCChhHHHHHHHHhcc
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS---EHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs---~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
++.+.|.++.+.-..|+......||+|.+.. .+...|+....-.++..|...|+.
T Consensus 6 ~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~ 63 (89)
T PF00679_consen 6 IMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRS 63 (89)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHH
T ss_pred EEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhc
Confidence 3456777777888899999999999998875 469999999999999888888864
No 371
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=29.74 E-value=2.2e+02 Score=30.19 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=50.1
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE---EEEEEeCChHHHHHHHHHHhcCe
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL---FTIVVSGTERVLRQVVEQLNKLV 143 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi---iTIVV~gdd~~veQLiKQL~KLi 143 (349)
.-.+.+...|++|.|.|+..+|...+.||.-|.--+++..+- +-+-++.....+.++++-|..-.
T Consensus 36 ~~~~if~~r~~~~~l~~~Lk~f~~~~vnl~HiEsR~s~~~~~~~evlv~~~~~~~~l~~~i~~lrq~~ 103 (461)
T KOG3820|consen 36 RISLIFSLRNKVGALARALKAFEEFHVNLLHIESRPSERRSSGYEVLVELDATRGQLIQAIELLRQNH 103 (461)
T ss_pred eEEEEEEecccchHHHHHHHHhhhcCceEEEeecccccccCCCceEEEeeccchhhHHHHHHHHHHhc
Confidence 334677789999999999999999999999999888876642 33345566677888888765543
No 372
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=29.42 E-value=39 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=24.6
Q ss_pred EEEeCCCchhhhhhhhhcccccccceee
Q 018896 319 MLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 319 ~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
-.+...||++.+|-+.|++.|-|++-+.
T Consensus 9 ~~m~~~~g~~~~If~~la~~~I~vd~I~ 36 (73)
T cd04934 9 NKKSLSHGFLARIFAILDKYRLSVDLIS 36 (73)
T ss_pred ccCccccCHHHHHHHHHHHcCCcEEEEE
Confidence 4456789999999999999999999875
No 373
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=28.95 E-value=2.4e+02 Score=23.91 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=27.9
Q ss_pred hhheeeEEEeC-CCCCHHHH-HHHHHhcCcEEEEecCCEEEE
Q 018896 158 ERELMLIKLNG-DTSTWPEI-MWLVDIFRAKVVDISEHALTI 197 (349)
Q Consensus 158 ~RELaLIKV~~-~~~~R~EI-~~la~iFrAkIVDvs~~sltI 197 (349)
.|||.=|||.- .++.|.|+ .+|++.-+|.+|.+=..++++
T Consensus 43 ~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~IG~~~vl 84 (97)
T PRK10343 43 HHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVL 84 (97)
T ss_pred HCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEeeeCcEEEE
Confidence 46665555542 23455554 669999999999997777776
No 374
>PRK13558 bacterio-opsin activator; Provisional
Probab=28.65 E-value=7.1e+02 Score=26.15 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=91.2
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhh
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V 157 (349)
...+.+-+.+..-.|.+++.-+ +..|+--.+-++.+.+. +-+.+.|++. +.+...|.--..|..++.++..+
T Consensus 449 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-- 521 (665)
T PRK13558 449 VLELEVELSDPDLFLVELAAAT---DCRLEYRGSIADDDGGVLVLFTVPGDDA--TALVDAAADYDAVQDVRVLVSTD-- 521 (665)
T ss_pred eEEEEEEECCCcchHHHHhhhc---CcEEEEEeEEEcCCCCEEEEEEEeCCCH--HHHHHhhhccCCcceEEEEEecC--
Confidence 4578888999999999877654 66666555556666543 5556776642 44556666666666655554332
Q ss_pred hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEe--cCCEEEEEE-eCChhHHHHHHHHhccC-CcEEEeec
Q 018896 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDI--SEHALTIEV-TGDPGKMVAVQRNLSKF-GIKELART 224 (349)
Q Consensus 158 ~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDv--s~~sltIEv-TG~~~KIdafi~~L~~f-GIlEiaRT 224 (349)
.-.|+++..+.. .+......+++.|.++ .++..++.+ .++.+.+..+++.|+.. .=.++.+-
T Consensus 522 --~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (665)
T PRK13558 522 --DECLVEFTLSGD---SLVRLLSERGGRVQDMHADRDRLELTVEVPTEAAGRAVVETLRDRYAGAELVSY 587 (665)
T ss_pred --CceEEEEEecCC---cHhHhhHhcCCEEEEEEEeCCeEEEEEEcCCCccHHHHHHHHHhhcCCcEEEEE
Confidence 247888876532 6788888999999776 567777887 67889999999988864 33344443
No 375
>PRK14440 acylphosphatase; Provisional
Probab=28.42 E-value=2.6e+02 Score=22.79 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=29.2
Q ss_pred ecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 114 LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 114 ~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
.+...|.+.|.+.|+++.++++++.|.+-..-.+|+.++
T Consensus 36 ~N~~dG~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~i~ 74 (90)
T PRK14440 36 KNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEKVD 74 (90)
T ss_pred EECCCCCEEEEEEcCHHHHHHHHHHHhhCCCCcEEEEEE
Confidence 344556789999999999999999998765555555543
No 376
>PRK14633 hypothetical protein; Provisional
Probab=28.20 E-value=4.3e+02 Score=23.56 Aligned_cols=101 Identities=11% Similarity=0.184 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHHhcCeeeeEEEe----cC-Cchhhhhhee
Q 018896 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVERELM 162 (349)
Q Consensus 92 VL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd----d~~veQLiKQL~KLiDVikV~d----lt-~~~~V~RELa 162 (349)
+-..+.-+....||-+.-+.+..... .+++|.++.+ -+..+.+-++|..+.|+..... |. ..|-++|.|-
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldRpL~ 84 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNRQIF 84 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCCCCC
Confidence 34566778889999999999876543 5788888742 3667888889999888653311 10 1334444442
Q ss_pred -----------eEEEeC--CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 018896 163 -----------LIKLNG--DTSTWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (349)
Q Consensus 163 -----------LIKV~~--~~~~R~EI~~la~iFrAkIVDvs~~sltIEvT 200 (349)
.+||+. +...+ +.|.|++.+++++.+++++-
T Consensus 85 ~~~~f~r~~G~~v~V~~~~~~~~~-------~~~~G~L~~v~~~~i~l~~~ 128 (150)
T PRK14633 85 NIIQAQALVGFNVKAVTLAPVGSQ-------TKFKGVLERVEGNNVILNLE 128 (150)
T ss_pred CHHHHHHhCCCeEEEEEecccCCc-------EEEEEEEEEEeCCEEEEEEc
Confidence 344443 22222 57999999999999999873
No 377
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.81 E-value=37 Score=24.50 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.4
Q ss_pred EeCCCchhhhhhhhhcccccccceee
Q 018896 321 VNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 321 V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+.+.||++.++...+++.|-|++.+.
T Consensus 11 ~~~~~~~~~~if~~L~~~~I~v~~i~ 36 (66)
T cd04919 11 MKNMIGIAGRMFTTLADHRINIEMIS 36 (66)
T ss_pred CCCCcCHHHHHHHHHHHCCCCEEEEE
Confidence 34689999999999999999997664
No 378
>PRK14421 acylphosphatase; Provisional
Probab=27.78 E-value=95 Score=26.09 Aligned_cols=40 Identities=8% Similarity=0.214 Sum_probs=30.6
Q ss_pred ecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896 114 LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 114 ~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
.+...|.+.|.+.|+++.++++++.|.+-..-.+|+.++.
T Consensus 37 ~N~~dG~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~v~~ 76 (99)
T PRK14421 37 RNRRDGSVEALFAGPADAVAEMIARCRRGPSAARVDAVED 76 (99)
T ss_pred EECCCCEEEEEEeCCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 3445578999999999999999999987665566655543
No 379
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=27.26 E-value=2.3e+02 Score=23.77 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEEeCC-CCCHH-HHHHHHHhcCcEEEEecCCEEEE
Q 018896 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGD-TSTWP-EIMWLVDIFRAKVVDISEHALTI 197 (349)
Q Consensus 128 dd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV~~~-~~~R~-EI~~la~iFrAkIVDvs~~sltI 197 (349)
++..++++-.+| =.|||.=|||.-+ ++.+. -+.+|++..+|.+|++=...+++
T Consensus 28 t~~vi~ei~~aL-----------------~~hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~Vq~iG~~~vl 82 (95)
T TIGR00253 28 TEGVIKEIEQAL-----------------EHRELIKVKVATEDREDKTLIAEALVKETGACNVQVIGKTIVL 82 (95)
T ss_pred CHHHHHHHHHHH-----------------HhCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEEEEccEEEE
Confidence 566677777776 3467665665422 33443 46788899999999998777776
No 380
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=27.21 E-value=51 Score=30.71 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=25.2
Q ss_pred eEEEEEE--eCCCchhhhhhhhhccccccccee
Q 018896 315 HTLSMLV--NNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 315 ~~ls~~V--~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
++|.+.. .+.||+++-|+++.|.||.+|--+
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi 126 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQI 126 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEE
Confidence 4555555 578999999999999999988643
No 381
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=27.20 E-value=67 Score=35.75 Aligned_cols=48 Identities=21% Similarity=0.437 Sum_probs=40.4
Q ss_pred ccccccccccccCCCCccceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 295 QVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 295 ~vl~~~~~~~~~~~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
.+++..|+.-. ...-...|.+...|++|+|+-|+-.++.-+-||.++.
T Consensus 612 r~i~v~W~~~~----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~ 659 (701)
T COG0317 612 RVIDVSWGPEY----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVN 659 (701)
T ss_pred eEEEEEecCCC----CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEee
Confidence 68889998332 3445678899999999999999999999999999875
No 382
>PRK14435 acylphosphatase; Provisional
Probab=27.07 E-value=81 Score=25.74 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=29.9
Q ss_pred cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896 115 NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 115 Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
+...|.+.|.+.|+++.++++++.|.+-..-.+|+.++.
T Consensus 36 N~~dG~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~ 74 (90)
T PRK14435 36 NMDDGSVFIHAEGDENALRRFLNEVAKGPPAAVVTNVSV 74 (90)
T ss_pred ECCCCCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 334477999999999999999999987766556665543
No 383
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.51 E-value=34 Score=27.38 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.6
Q ss_pred EeCCCchhhhhhhhhcccccccceee
Q 018896 321 VNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 321 V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
+.++||++++|-..|++.|-|++-++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 56889999999999999999999774
No 384
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.35 E-value=45 Score=33.10 Aligned_cols=63 Identities=11% Similarity=0.242 Sum_probs=38.7
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~ 149 (349)
.-+..+ |--|+.|+..|..+||+|...-.....-+ ++-|. .+.+.+..|+..|+.+.||..|.
T Consensus 207 fkiv~e--~ssl~qV~~~Lr~~G~~i~d~~le~~P~~---~vev~~~~lEk~qkL~q~L~e~edV~~iy 270 (276)
T KOG2972|consen 207 FKIVTE--PSSLNQVAHKLRSKGFEIKDSGLEFIPLE---EVEVDVPALEKIQKLIQALYENEDVMFIY 270 (276)
T ss_pred eEEEec--cchHHHHHHHhhcCCceeeccccccccCC---ccccCccchHHHHHHHHHHhhchhHHHHh
Confidence 555554 56799999999999999995443321111 22222 12344555666677777777664
No 385
>COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism]
Probab=26.28 E-value=4.4 Score=39.79 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=55.5
Q ss_pred EEEEEEEcCcccHHHH-HHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 80 HTISVFVGDESGIINR-IAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 80 htISIlVeNkPGVL~R-ItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
+.-.|.++|++|+.-. |+|+...-++|+..+.+.....-..+.+...++...+++++..++++-....|..
T Consensus 180 ~a~~i~~~h~lGltcdpVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~~y 251 (262)
T COG1760 180 NAPEIAMEHNLGLTCDPVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNVKY 251 (262)
T ss_pred cccHHHHhcCCCceehhhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcchhh
Confidence 3456778888999999 9999999999999999998877777666666666677888777666655555543
No 386
>PRK14444 acylphosphatase; Provisional
Probab=25.65 E-value=1.3e+02 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=30.1
Q ss_pred ecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 114 LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 114 ~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
.+...|.+.|.+.|++..++++++.|.+...-.+|+.++
T Consensus 37 ~N~~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~ 75 (92)
T PRK14444 37 RNLSDGRVEAVFEGSRPAVQKMISWCYSGPSHARVERVE 75 (92)
T ss_pred EECCCCcEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 344557799999999999999999998776655555543
No 387
>PRK14647 hypothetical protein; Provisional
Probab=25.49 E-value=5e+02 Score=23.33 Aligned_cols=102 Identities=14% Similarity=0.248 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHHhcCeeeeEEEe----cC-Cchhhhhhe-
Q 018896 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL- 161 (349)
Q Consensus 92 VL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd----d~~veQLiKQL~KLiDVikV~d----lt-~~~~V~REL- 161 (349)
+-..+..+....||-+.-+.+.......+++|.++.+ -+..+.+-++|..++|+..... |. ..|-++|.|
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~RpL~ 89 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLK 89 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCCcCC
Confidence 3345667788999999999998877777889988743 3668888889998888653210 00 133344443
Q ss_pred ----------eeEEEeCC--C-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 018896 162 ----------MLIKLNGD--T-----STWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (349)
Q Consensus 162 ----------aLIKV~~~--~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvT 200 (349)
-.+||+.. . +.| +.|.|++.++.++.+++++-
T Consensus 90 ~~~~f~r~~G~~v~V~l~~~~~~~~~~~~-------~~~~G~L~~~~~~~v~l~~~ 138 (159)
T PRK14647 90 KEADYERYAGRLVKVRTFELLADEAGNKR-------KTFLGELEGLADGVVTIALK 138 (159)
T ss_pred CHHHHHHhCCcEEEEEEeccccccccCCc-------eEEEEEEEeecCCEEEEEEc
Confidence 23555442 1 123 68999999999999999974
No 388
>PRK14449 acylphosphatase; Provisional
Probab=25.49 E-value=1.3e+02 Score=24.38 Aligned_cols=38 Identities=13% Similarity=0.349 Sum_probs=29.1
Q ss_pred cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 115 NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 115 Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+.+.|.+.|.+.|+++.++++++.|.+=..-.+|++++
T Consensus 37 N~~dG~Vei~~~G~~~~v~~f~~~l~~~~~~a~V~~i~ 74 (90)
T PRK14449 37 NLYDGSVEVVAEGDEENIKELINFIKTGLRWARVDNVE 74 (90)
T ss_pred ECCCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEE
Confidence 44456799999999999999999998655555565544
No 389
>PRK14451 acylphosphatase; Provisional
Probab=25.42 E-value=98 Score=25.26 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=31.0
Q ss_pred ecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 114 LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 114 ~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
.+...|.+.|.+.|+++.++++++.|.+-..-.+|++++
T Consensus 36 ~N~~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~ 74 (89)
T PRK14451 36 RNLADGRVEVFACGKEDKLEEFYTWLQKGPLNARVDVCT 74 (89)
T ss_pred EECCCCCEEEEEEECHHHHHHHHHHHhhCCCceEEEEEE
Confidence 344557799999999999999999998876666666654
No 390
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=25.37 E-value=4e+02 Score=25.42 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=47.1
Q ss_pred EEEEeCChHHHHHHHHHHhcCeeeeEEEec--CC-chhhhhheeeEEE-eCCCCCHHHHHHHHHhcCcEEEEecCCEEEE
Q 018896 122 TIVVSGTERVLRQVVEQLNKLVNVIKVEDI--SN-EPHVERELMLIKL-NGDTSTWPEIMWLVDIFRAKVVDISEHALTI 197 (349)
Q Consensus 122 TIVV~gdd~~veQLiKQL~KLiDVikV~dl--t~-~~~V~RELaLIKV-~~~~~~R~EI~~la~iFrAkIVDvs~~sltI 197 (349)
++.|.|. -.+-++.-|+-|.....+|.-. ++ .-..-++|---.+ ....++ +.++.+. . +.=.++|
T Consensus 172 ~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~---~~~~~~~-~------g~~D~vi 240 (343)
T PRK09880 172 RVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDD---LDHYKAE-K------GYFDVSF 240 (343)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCccc---HHHHhcc-C------CCCCEEE
Confidence 3445565 5677888888887754333222 21 1122333321111 111111 2222211 1 1124789
Q ss_pred EEeCChhHHHHHHHHhccCCcE
Q 018896 198 EVTGDPGKMVAVQRNLSKFGIK 219 (349)
Q Consensus 198 EvTG~~~KIdafi~~L~~fGIl 219 (349)
|.+|.+.-++..++.|++.|.+
T Consensus 241 d~~G~~~~~~~~~~~l~~~G~i 262 (343)
T PRK09880 241 EVSGHPSSINTCLEVTRAKGVM 262 (343)
T ss_pred ECCCCHHHHHHHHHHhhcCCEE
Confidence 9999998899999999999944
No 391
>PRK14423 acylphosphatase; Provisional
Probab=25.25 E-value=1.3e+02 Score=24.64 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.9
Q ss_pred cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 115 NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 115 Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+...|.+.|.+.|++..++++++.|.+-..-.+|++++
T Consensus 39 N~~dG~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~ 76 (92)
T PRK14423 39 NLDDGRVEAVFEGPRDAVEAMVEWCHEGSPAAVVEDVE 76 (92)
T ss_pred ECCCCeEEEEEEECHHHHHHHHHHHHhCCCceEEEEEE
Confidence 44557789999999999999999998766666666554
No 392
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=24.99 E-value=57 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=19.7
Q ss_pred HhcCcEEEEecCCEEEEEEeCCh
Q 018896 181 DIFRAKVVDISEHALTIEVTGDP 203 (349)
Q Consensus 181 ~iFrAkIVDvs~~sltIEvTG~~ 203 (349)
..++|...|+.+|.+++|..|.+
T Consensus 31 g~v~G~L~~V~pDhIvl~~~~~~ 53 (66)
T PF10842_consen 31 GSVRGILVDVKPDHIVLEENGTP 53 (66)
T ss_pred CcEEEEEEeecCCEEEEEeCCcE
Confidence 35689999999999999998764
No 393
>PRK14430 acylphosphatase; Provisional
Probab=24.94 E-value=1.3e+02 Score=24.71 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=31.3
Q ss_pred ecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896 114 LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 114 ~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
.+...|.+.|.+.|+++.+++++..|.+-..-.+|++++-
T Consensus 37 rN~~dGsVei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~ 76 (92)
T PRK14430 37 RNRADGTVEVMASGTVRQLEALRAWMEAGPPAAQVTKVEV 76 (92)
T ss_pred EECCCCcEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 3445567999999999999999999987666666666553
No 394
>PRK14429 acylphosphatase; Provisional
Probab=24.89 E-value=1.4e+02 Score=24.22 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=29.3
Q ss_pred cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 115 NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 115 Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+.+.|.+.|.+.|+++.++++++.|.+=..-.+|++++
T Consensus 36 N~~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~ 73 (90)
T PRK14429 36 NCEDGSVEILAQGSDPAVDNLIAWCEVGVPCTEVLRVT 73 (90)
T ss_pred ECCCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEE
Confidence 44557799999999999999999998655555555554
No 395
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.71 E-value=2.2e+02 Score=26.66 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=45.2
Q ss_pred hheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccC
Q 018896 159 RELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKF 216 (349)
Q Consensus 159 RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~f 216 (349)
.....++|+.+..--.|.++=...|.+-|+.. ++.-+|.+-|+.++|..-++-+.+|
T Consensus 110 ~~~~~iRv~l~~~i~~erl~ei~E~~gvI~Ef-ee~~~V~I~Gdke~Ik~aLKe~s~~ 166 (169)
T PF09869_consen 110 PGFETIRVKLKKPIQEERLQEISEWHGVIFEF-EEDDKVVIEGDKERIKKALKEFSSF 166 (169)
T ss_pred CCceeEEEecCccchHHHHHHHHHHhceeEEe-cCCcEEEEeccHHHHHHHHHHHHHH
Confidence 45678888887655667777777788999999 5666699999999999988887764
No 396
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=24.47 E-value=73 Score=27.83 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=26.7
Q ss_pred hcCcEEEEecCC-EEEEEEeCChhHHHHHHHHhcc
Q 018896 182 IFRAKVVDISEH-ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 182 iFrAkIVDvs~~-sltIEvTG~~~KIdafi~~L~~ 215 (349)
++.++|.+.+.+ =+++|+..+++||..|++.+.+
T Consensus 55 ~h~~~if~Ls~~LPVviEvVD~eekI~~~l~~l~e 89 (109)
T COG1993 55 IHGSKIFRLSTDLPVVVEVVDEEEKIERFLPELDE 89 (109)
T ss_pred ccccchhhccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 344556565555 4899999999999999999875
No 397
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.36 E-value=94 Score=34.79 Aligned_cols=48 Identities=31% Similarity=0.286 Sum_probs=40.2
Q ss_pred CcccCcccccccceeeeeccccEEEEecCCCCCCcccccccccccceeEeeeccCC
Q 018896 2 AATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGS 57 (349)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (349)
.+|||.-|.+|- -.|.|+| .|||--||-|+|+..||+......++-.+
T Consensus 795 ggtmtss~~~~~--~~~~~gs------s~~sv~r~vf~s~~~vpgfa~~~~~n~~s 842 (864)
T KOG2219|consen 795 GGTMTSSPRMNP--FRIVKGS------SPGSVRRTVFTSSSSVPGFAGHYSANLRS 842 (864)
T ss_pred CceeccCCCCCC--CccCCCC------CCCccccceeeccccCCCccceeeccccc
Confidence 478999998886 4578888 49999999999999999998888777444
No 398
>PRK14445 acylphosphatase; Provisional
Probab=24.26 E-value=1.1e+02 Score=24.96 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=29.8
Q ss_pred ecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 114 LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 114 ~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
.+...|.+.|.+.|+++.++++++.|.+...-.+|++++
T Consensus 37 ~N~~dG~Vei~~qG~~~~l~~f~~~l~~gP~~a~V~~i~ 75 (91)
T PRK14445 37 RNLPDGTVEIEAQGSSGMIDELIKQAERGPSRSSVTSIM 75 (91)
T ss_pred EECCCCeEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 344557799999999999999999998865555555443
No 399
>PRK14425 acylphosphatase; Provisional
Probab=24.12 E-value=1.2e+02 Score=24.94 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=31.3
Q ss_pred ecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896 114 LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 114 ~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
.+...|.+.|.+.|++..++++++.|.+-..-.+|+.++.
T Consensus 39 ~N~~dGsVei~~qG~~~~le~f~~~l~~gp~~a~V~~i~~ 78 (94)
T PRK14425 39 RNESDGSVTALIAGPDSAISAMIERFRRGPPGASVSGVET 78 (94)
T ss_pred EECCCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 3445578999999999999999999988766666665543
No 400
>PRK01002 nickel responsive regulator; Provisional
Probab=24.09 E-value=5.1e+02 Score=22.94 Aligned_cols=72 Identities=29% Similarity=0.406 Sum_probs=52.3
Q ss_pred eEEEEEEEEcCc--ccHHHHHHHHHhccCcceee-EeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 78 KRHTISVFVGDE--SGIINRIAGVFARRGYNIES-LAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 78 ~~htISIlVeNk--PGVL~RItGLFsRRGyNIeS-LtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
..-+|++ +.|+ .++-.+++.+.....=.|-| +.+-..++..+..+++.|+...+..+.++|..+=.|..+..
T Consensus 56 ~~GvIti-vydh~~~~l~~~l~~iqH~~~~~Iiss~Hvhld~~~ClEvivv~G~~~~I~~l~~kL~~lkGV~~~kl 130 (141)
T PRK01002 56 RVGTISV-IYDHHSTGVMEKLTDIQHDYSDLIVASLHIHLDHDHCLEVIVVRGDAKEIRELTEKLMALKGVKHVKL 130 (141)
T ss_pred EEEEEEE-EEeccchhHHHHHHHHHHhccCeEEEeeeeecCCCcEEEEEEEEcCHHHHHHHHHHHhCcCCeeEEEE
Confidence 3456777 4444 47888999999777555544 44444334356788999999999999999998888877763
No 401
>PRK09084 aspartate kinase III; Validated
Probab=23.70 E-value=1.3e+02 Score=31.02 Aligned_cols=55 Identities=22% Similarity=0.455 Sum_probs=37.7
Q ss_pred EEEEEE---cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896 81 TISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (349)
Q Consensus 81 tISIlV---eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K 141 (349)
.|++.- .++||++.|+...+++ +||.-++.+.++. .++++|+.++ .++.++.|++
T Consensus 386 ~IsvvG~gm~~~~gv~arif~aL~~--~nI~~I~qgsSe~--sIS~vV~~~d--~~~al~~LH~ 443 (448)
T PRK09084 386 LVALIGNNLSKACGVAKRVFGVLEP--FNIRMICYGASSH--NLCFLVPESD--AEQVVQALHQ 443 (448)
T ss_pred EEEEECCCcccCcChHHHHHHHHHh--CCeEEEEEcCCCC--cEEEEEcHHH--HHHHHHHHHH
Confidence 455543 3789999999999975 6888877776643 4777886333 5555555544
No 402
>smart00322 KH K homology RNA-binding domain.
Probab=23.69 E-value=2.3e+02 Score=19.51 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~--~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|-+|.+.++++|..... +.-++++.|+++.+....+.+..
T Consensus 23 ~~i~~i~~~~~~~i~~~~~~~~~~~v~i~g~~~~v~~a~~~i~~ 66 (69)
T smart00322 23 STIKKIEEETGVKIDIPEDGSEERVVEITGPPENVEKAAELILE 66 (69)
T ss_pred hHHHHHHHHHCCEEEECCCCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 4677888888888766554 36889999999998887777653
No 403
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.45 E-value=80 Score=35.96 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=33.1
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK 118 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~ 118 (349)
..|-|+..|+|..+++|++-+.++|+||..--+--|.+.
T Consensus 685 teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG 723 (867)
T COG2844 685 TEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG 723 (867)
T ss_pred eEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC
Confidence 378999999999999999999999999987766655553
No 404
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=22.85 E-value=28 Score=21.22 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=10.0
Q ss_pred cccccccceeeeec
Q 018896 7 PYQKLNLSHCFITK 20 (349)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (349)
--+.|+|++|.|+.
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 35789999999875
No 405
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=22.79 E-value=1.2e+02 Score=32.35 Aligned_cols=39 Identities=28% Similarity=0.509 Sum_probs=32.4
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS 126 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~ 126 (349)
++|-.|.+.|+-.+|+..|+||+=++.|.++-. |..+|+
T Consensus 481 vq~ss~i~~rmF~~l~e~giNvqMISQGAskvN--IS~ivn 519 (559)
T KOG0456|consen 481 VQNSSGILERMFCVLAENGINVQMISQGASKVN--ISCIVN 519 (559)
T ss_pred hhhhhHHHHHHHHHHHhcCcceeeeccccccce--EEEEEC
Confidence 789999999999999999999999998766532 555565
No 406
>PRK14420 acylphosphatase; Provisional
Probab=22.44 E-value=1.2e+02 Score=24.61 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=28.3
Q ss_pred cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 115 NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 115 Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+...|.+.|.+.|+++.++++++.|.+=..-..|++++
T Consensus 36 N~~dG~Vei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~ 73 (91)
T PRK14420 36 NRDDGTVEIEAEGPEEALQLFLDAIEKGSPFSKVTDVH 73 (91)
T ss_pred ECCCCcEEEEEEECHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 34456799999999999999999997654444455444
No 407
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=22.29 E-value=1.6e+02 Score=25.44 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=32.1
Q ss_pred cCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC
Q 018896 183 FRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG 217 (349)
Q Consensus 183 FrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fG 217 (349)
.++.|-..+++++.=++-|.++++|.|.+.|+.-|
T Consensus 36 lrGWv~Nt~~GtvkG~leGp~~~vd~mk~wl~~~g 70 (98)
T KOG3360|consen 36 LRGWVMNTSEGTVKGQLEGPPEKVDEMKEWLLTRG 70 (98)
T ss_pred ceEEEEecCCceEEEEEeCCHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999998655
No 408
>PRK14433 acylphosphatase; Provisional
Probab=22.20 E-value=1.2e+02 Score=24.71 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 117 DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 117 d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
..|.+.|.+.|+++.+++.++.|.+-..-..|++++
T Consensus 37 ~dG~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~i~ 72 (87)
T PRK14433 37 SDGRVEVVAEGPKEALERLLHWLRRGPRHARVEAVD 72 (87)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEE
Confidence 446789999999999999999998765544555444
No 409
>PRK02001 hypothetical protein; Validated
Probab=22.02 E-value=4.1e+02 Score=24.05 Aligned_cols=91 Identities=8% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHhccCcceeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHHhcCeeee------EEE------ecCCchhhhhhe-
Q 018896 99 VFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVI------KVE------DISNEPHVEREL- 161 (349)
Q Consensus 99 LFsRRGyNIeSLtVg~Ted~giiTIVV~gd----d~~veQLiKQL~KLiDVi------kV~------dlt~~~~V~REL- 161 (349)
+....||-+..+.+... +.++|.++.+ -+..+.+-++|..+.|+. +|. .|+...+..|=+
T Consensus 14 ~~~~~g~eLvdv~~~~~---~~lrV~ID~~~Gv~lddC~~vSr~is~~LD~~d~~Y~LEVSSPGldRpL~~~~~f~r~~G 90 (152)
T PRK02001 14 LLEGPELFLVDLTISPD---NKIVVEIDGDEGVWIEDCVELSRAIEHNLDREEEDFELEVGSAGLTSPLKVPRQYKKNIG 90 (152)
T ss_pred hhhhcCcEEEEEEEEcC---CEEEEEEECCCCCCHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcCCCHHHHHHhCC
Confidence 45678999999987742 4588888743 356788888999999864 332 122222333322
Q ss_pred eeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC
Q 018896 162 MLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG 201 (349)
Q Consensus 162 aLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG 201 (349)
-+++|.... -+.|.|++.+++++.++|++-+
T Consensus 91 ~~v~V~l~~---------~~~~~G~L~~~~~~~i~l~~~~ 121 (152)
T PRK02001 91 RELEVLTKN---------GKKIEGELKSADENDITLEVKA 121 (152)
T ss_pred CEEEEEECC---------CCEEEEEEEEEeCCEEEEEEcc
Confidence 246666541 2679999999999999999865
No 410
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.86 E-value=5.4e+02 Score=25.17 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=42.3
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC---ChHHHHHHHHHHhcCeeee
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG---TERVLRQVVEQLNKLVNVI 146 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g---dd~~veQLiKQL~KLiDVi 146 (349)
..+.+-+-.--.----+.+.+-++.+|||-.--.. +-++|-||-+.-| +...++++.+||++|.-..
T Consensus 150 ~a~~VQLgAl~n~dranel~~~Lr~~G~~ayi~~~--~p~qg~ltRv~vGP~~sr~~a~~~~~el~ql~gl~ 219 (226)
T COG3147 150 QAFVVQLGALKNADRANELVAKLRGAGYRAYIEPS--TPVQGDLTRVRVGPDASRAKAEGLLGELEQLSGLN 219 (226)
T ss_pred cceeehhhhhhhHHHHHHHHHHHHhCCCceeeccc--CCCCCceeEEEecCcccHHHHHHHHHHHHHHhCCc
Confidence 34444443333334456788999999999774443 4455555544333 5567999999998886543
No 411
>PRK14448 acylphosphatase; Provisional
Probab=20.76 E-value=1.4e+02 Score=24.30 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=29.4
Q ss_pred cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 115 NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 115 Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+...|.+.|.+.|+++.++++++.|.+-..-..|+.++
T Consensus 36 N~~dG~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~ 73 (90)
T PRK14448 36 NRPDGSVEVVAVGSDAQIAAFRDWLQHGPPTAVVCNVI 73 (90)
T ss_pred ECCCCCEEEEEEeCHHHHHHHHHHHHhCCCceEEEEEE
Confidence 34446799999999999999999998766555665554
No 412
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=20.75 E-value=58 Score=34.41 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=43.1
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEE----eC-ChHHHHHHHHHHhcCee
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV----SG-TERVLRQVVEQLNKLVN 144 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV----~g-dd~~veQLiKQL~KLiD 144 (349)
.+++.+.++||-.++++.+...+++++.++--...-...++|-.| .. ......||..++.|..|
T Consensus 375 ~l~v~l~d~pG~~~~l~~~i~~~~~se~~~~~~~~~~~~v~t~~v~~~~e~~~~~~~~ql~~~~~~~~d 443 (457)
T KOG1250|consen 375 RLLVALPDRPGGFNKLTELIGPLSVSEKDIRHERAWMRNVYTSFVKVVRETEGKEHEQQLKQKLKKAYD 443 (457)
T ss_pred eeeeecccCCCcchhhHHhhcccccchhhhhhhHHHhhhheEEEEEEEEecccHHHHHHHHHhhhheec
Confidence 488999999999999999999999999988765544444443322 11 23334445445544444
No 413
>PRK05925 aspartate kinase; Provisional
Probab=20.62 E-value=2.3e+02 Score=29.55 Aligned_cols=36 Identities=6% Similarity=-0.010 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 89 kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
++|++.|+...+++.|+||.+++.+.. -++++|+.+
T Consensus 384 ~~~v~~~~~~aL~~~~Ini~~i~~s~~----~is~vV~~~ 419 (440)
T PRK05925 384 SWKVVRTFTEKLRGYQTPVFCWCQSDM----ALNLVVNEE 419 (440)
T ss_pred cccHHHHHHHHHhhCCCCEEEEECCCc----eEEEEEehH
Confidence 388999999999999999987665332 467888743
No 414
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=20.50 E-value=72 Score=23.21 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 018896 168 GDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (349)
Q Consensus 168 ~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~ 203 (349)
.+..+|.++.++++.|+|++.+.-.+..+.=+++++
T Consensus 16 ~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~ 51 (78)
T PF00533_consen 16 FDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNP 51 (78)
T ss_dssp TSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSS
T ss_pred CCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCC
Confidence 456789999999999999998877777777788877
No 415
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=20.49 E-value=2.2e+02 Score=26.65 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=33.1
Q ss_pred HHHHHHHHHhc--CcEE-EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 173 WPEIMWLVDIF--RAKV-VDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 173 R~EI~~la~iF--rAkI-VDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
-.++++..+.. .+.+ +++..+.+.|++-|++.+|...+..++.
T Consensus 11 ~~~fle~l~~~~~~~~~~v~~k~n~l~I~i~G~~~eike~~~~Ik~ 56 (190)
T PF09840_consen 11 CEEFLERLSKMVKSIYIYVEVKGNSLKIEIQGYEKEIKEAIRRIKE 56 (190)
T ss_pred HHHHHHHHHhhccCcEEEEEEeCCEEEEEEecChHHHHHHHHHHHH
Confidence 33455555555 5566 8889999999999999999888877765
No 416
>PRK14442 acylphosphatase; Provisional
Probab=20.27 E-value=1.8e+02 Score=23.81 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=29.6
Q ss_pred cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 115 NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 115 Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+.+.|.+.|.+.|+++.++++++.|.+...-..|+.++
T Consensus 38 N~~dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~ 75 (91)
T PRK14442 38 NLDDGRVEVVWEGEEDRAKALERWLGRGPRHAEVSAVE 75 (91)
T ss_pred ECCCCCEEEEEEcCHHHHHHHHHHHhhCCCCeEEEEEE
Confidence 34456799999999999999999998876655565554
No 417
>PF01330 RuvA_N: RuvA N terminal domain; InterPro: IPR013849 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. This entry represents domain I of RuvA, which has an OB-fold structure. This domain forms the RuvA tetramer contacts [].; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJP_A 1D8L_B 1CUK_A 1C7Y_A 1IXR_B 2ZTC_A 2ZTD_B 2H5X_A 2ZTE_A 1BVS_E ....
Probab=20.27 E-value=88 Score=23.45 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=18.5
Q ss_pred cCcEEEEecCCEEEEEEeCChh
Q 018896 183 FRAKVVDISEHALTIEVTGDPG 204 (349)
Q Consensus 183 FrAkIVDvs~~sltIEvTG~~~ 204 (349)
.+|+|+++++++++||+-|=--
T Consensus 5 l~G~v~~~~~~~vvi~~~GvGy 26 (61)
T PF01330_consen 5 LKGKVVEKNPDYVVIDVNGVGY 26 (61)
T ss_dssp EEEEEEEEESSEEEEEETTEEE
T ss_pred EEEEEEEEcCCEEEEEECCEEE
Confidence 4689999999999999987443
No 418
>PRK14428 acylphosphatase; Provisional
Probab=20.18 E-value=1.9e+02 Score=24.20 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.1
Q ss_pred cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 115 NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 115 Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
+...|.+.|.+.|+++.++++++.|.+-..-..|+.++
T Consensus 42 N~~dGsVei~~qG~~~~i~~fi~~l~~gP~~a~V~~v~ 79 (97)
T PRK14428 42 NCRDGSVELEAQGSSDAVQALVEQLAIGPRWSEVSHVA 79 (97)
T ss_pred ECCCCEEEEEEEcCHHHHHHHHHHHhhCCCccEEEEEE
Confidence 44457799999999999999999998765555555443
No 419
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.07 E-value=93 Score=31.60 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=31.2
Q ss_pred hhhhheeeEE-EeCCCCCHHHHHHHHHhcCcEE--EEecCC-EEEEEEeCChhHHHHHHHHhccCCcEEEee
Q 018896 156 HVERELMLIK-LNGDTSTWPEIMWLVDIFRAKV--VDISEH-ALTIEVTGDPGKMVAVQRNLSKFGIKELAR 223 (349)
Q Consensus 156 ~V~RELaLIK-V~~~~~~R~EI~~la~iFrAkI--VDvs~~-sltIEvTG~~~KIdafi~~L~~fGIlEiaR 223 (349)
.|.=|-+|+| |+-++++-.++.++++-++++| +..++- ..-+ -.=+.+++++|.+.|+..||--.+|
T Consensus 250 ri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~~-~~~s~~~~~~F~~~L~~~gi~~tvR 320 (345)
T PRK14466 250 RVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIPGVDL-EGSDMARMEAFRDYLTSHGVFTTIR 320 (345)
T ss_pred EEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCCCCC-cCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 3444555555 4444444444555554444443 333320 0111 1123456666666666666644444
Done!