Query 018896
Match_columns 349
No_of_seqs 250 out of 1324
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fgc_A Acetolactate synthase, 100.0 7.7E-53 2.6E-57 381.8 20.0 159 77-236 27-189 (193)
2 2pc6_A Probable acetolactate s 100.0 4.4E-52 1.5E-56 367.9 17.5 157 78-234 3-161 (165)
3 2f1f_A Acetolactate synthase i 100.0 1.6E-51 5.3E-56 363.6 18.6 158 77-234 1-161 (164)
4 2fgc_A Acetolactate synthase, 99.3 1.3E-12 4.6E-17 118.6 4.0 48 297-348 16-63 (193)
5 2f06_A Conserved hypothetical 99.2 6.6E-10 2.3E-14 92.5 16.2 125 76-218 3-133 (144)
6 2ko1_A CTR148A, GTP pyrophosph 98.9 1.4E-08 4.9E-13 76.6 10.8 78 78-155 4-82 (88)
7 1u8s_A Glycine cleavage system 98.8 2.6E-08 8.9E-13 86.7 12.4 112 79-191 6-125 (192)
8 1zpv_A ACT domain protein; str 98.6 5.9E-08 2E-12 74.3 5.9 70 78-147 4-74 (91)
9 1y7p_A Hypothetical protein AF 98.0 1.9E-05 6.3E-10 73.4 8.2 79 78-158 3-86 (223)
10 2jhe_A Transcription regulator 97.5 0.0011 3.8E-08 54.4 11.7 69 81-152 2-71 (190)
11 2re1_A Aspartokinase, alpha an 97.5 0.00054 1.9E-08 58.7 10.0 129 79-217 25-165 (167)
12 1sc6_A PGDH, D-3-phosphoglycer 97.5 0.00047 1.6E-08 67.7 10.2 73 79-151 331-403 (404)
13 2nyi_A Unknown protein; protei 97.4 0.002 6.7E-08 56.7 12.9 116 77-192 3-126 (195)
14 1u8s_A Glycine cleavage system 97.3 0.00099 3.4E-08 57.7 8.8 70 74-143 88-166 (192)
15 2nyi_A Unknown protein; protei 97.2 0.0011 3.8E-08 58.2 8.3 66 75-141 89-161 (195)
16 3mtj_A Homoserine dehydrogenas 97.2 0.0011 3.9E-08 66.1 9.1 73 74-146 354-430 (444)
17 1zpv_A ACT domain protein; str 97.1 0.00029 9.8E-09 53.6 3.5 35 313-347 4-38 (91)
18 3k5p_A D-3-phosphoglycerate de 97.0 0.0031 1E-07 62.7 10.3 73 79-151 343-415 (416)
19 1ygy_A PGDH, D-3-phosphoglycer 96.9 0.0011 3.8E-08 66.7 6.8 72 78-151 453-526 (529)
20 2ko1_A CTR148A, GTP pyrophosph 96.9 0.00088 3E-08 50.1 4.1 34 314-347 5-38 (88)
21 3o1l_A Formyltetrahydrofolate 96.8 0.0026 9E-08 60.7 8.1 65 76-140 19-87 (302)
22 3lou_A Formyltetrahydrofolate 96.8 0.0025 8.5E-08 60.5 7.5 65 76-140 7-77 (292)
23 3n0v_A Formyltetrahydrofolate 96.8 0.0026 8.9E-08 60.1 7.5 63 77-139 6-71 (286)
24 3obi_A Formyltetrahydrofolate 96.7 0.003 1E-07 59.7 7.5 64 77-140 4-71 (288)
25 2f06_A Conserved hypothetical 96.7 0.0041 1.4E-07 51.3 7.4 35 80-114 73-107 (144)
26 3p96_A Phosphoserine phosphata 96.6 0.018 6.1E-07 54.8 12.3 140 77-218 10-171 (415)
27 3nrb_A Formyltetrahydrofolate 96.6 0.0044 1.5E-07 58.6 7.5 62 78-139 6-69 (287)
28 2dtj_A Aspartokinase; protein- 96.3 0.04 1.4E-06 47.7 11.5 127 80-217 16-157 (178)
29 2qmx_A Prephenate dehydratase; 95.8 0.04 1.4E-06 52.2 9.8 72 77-148 198-274 (283)
30 2dt9_A Aspartokinase; protein- 95.6 0.034 1.2E-06 47.4 7.6 120 86-215 24-154 (167)
31 2qmw_A PDT, prephenate dehydra 95.4 0.037 1.3E-06 52.0 8.0 70 78-148 185-262 (267)
32 3mwb_A Prephenate dehydratase; 95.3 0.082 2.8E-06 50.8 9.8 69 76-144 198-272 (313)
33 3s1t_A Aspartokinase; ACT doma 95.2 0.072 2.5E-06 46.6 8.6 126 85-217 23-158 (181)
34 3ab4_A Aspartokinase; aspartat 94.9 0.15 5E-06 49.8 10.6 130 79-217 264-406 (421)
35 3mah_A Aspartokinase; aspartat 94.7 0.072 2.5E-06 45.0 7.0 111 87-214 29-146 (157)
36 1phz_A Protein (phenylalanine 94.2 0.094 3.2E-06 52.7 7.6 73 76-148 31-108 (429)
37 3luy_A Probable chorismate mut 94.2 0.19 6.5E-06 48.6 9.5 70 79-148 206-282 (329)
38 4go7_X Aspartokinase; transfer 92.4 0.15 5.1E-06 46.0 5.3 125 85-218 42-178 (200)
39 2qrr_A Methionine import ATP-b 90.8 0.57 1.9E-05 37.0 6.5 60 163-222 25-97 (101)
40 2nzc_A Hypothetical protein; s 90.3 1.6 5.5E-05 35.0 8.7 71 76-146 4-76 (86)
41 2qsw_A Methionine import ATP-b 89.8 0.55 1.9E-05 37.0 5.6 60 163-222 25-97 (100)
42 3ced_A Methionine import ATP-b 89.4 0.55 1.9E-05 37.4 5.3 61 163-223 22-96 (98)
43 3c1m_A Probable aspartokinase; 88.8 2.3 7.8E-05 42.2 10.4 127 79-214 318-464 (473)
44 2re1_A Aspartokinase, alpha an 88.8 0.92 3.2E-05 38.5 6.6 46 79-128 103-151 (167)
45 3p96_A Phosphoserine phosphata 88.4 1.3 4.6E-05 41.9 8.2 67 75-142 97-165 (415)
46 3l76_A Aspartokinase; alloster 88.0 1.3 4.6E-05 45.5 8.4 127 85-218 451-590 (600)
47 2dt9_A Aspartokinase; protein- 87.8 1.5 5.2E-05 37.1 7.3 44 81-128 97-143 (167)
48 2dtj_A Aspartokinase; protein- 87.7 0.96 3.3E-05 39.0 6.1 54 81-140 97-153 (178)
49 3l76_A Aspartokinase; alloster 87.6 3.1 0.00011 42.8 10.8 134 77-218 270-418 (600)
50 3tvi_A Aspartokinase; structur 87.2 3.3 0.00011 41.3 10.4 117 87-214 309-434 (446)
51 3dhx_A Methionine import ATP-b 86.7 1.5 5.1E-05 35.2 6.3 60 162-221 22-94 (106)
52 3mtj_A Homoserine dehydrogenas 85.8 0.34 1.2E-05 48.4 2.6 35 312-346 357-391 (444)
53 3trg_A Acylphosphatase; fatty 85.0 1.3 4.6E-05 35.5 5.2 45 171-215 26-72 (98)
54 1rwu_A Hypothetical UPF0250 pr 80.7 10 0.00036 31.2 9.1 68 78-148 35-108 (109)
55 2qmx_A Prephenate dehydratase; 80.4 1.1 3.8E-05 42.3 3.5 34 312-345 198-231 (283)
56 2fhm_A Probable acylphosphatas 79.8 3.1 0.00011 32.6 5.4 45 171-215 16-62 (91)
57 1ulr_A Putative acylphosphatas 79.5 3.7 0.00013 32.0 5.8 44 171-214 16-61 (88)
58 2rjz_A PILO protein; structura 79.2 3.6 0.00012 35.1 6.0 65 89-153 44-113 (147)
59 3s1t_A Aspartokinase; ACT doma 79.1 3.9 0.00013 35.5 6.4 44 81-128 98-144 (181)
60 3mwb_A Prephenate dehydratase; 78.6 1.4 4.6E-05 42.4 3.5 37 309-345 196-233 (313)
61 1phz_A Protein (phenylalanine 77.5 1.8 6.1E-05 43.6 4.2 38 308-345 28-65 (429)
62 1w2i_A Acylphosphatase; hydrol 76.0 3.8 0.00013 32.2 4.9 44 171-214 18-63 (91)
63 2cdq_A Aspartokinase; aspartat 75.9 15 0.00053 37.1 10.5 115 87-215 352-480 (510)
64 1urr_A CG18505 protein; acylph 75.8 4.4 0.00015 32.5 5.3 45 171-215 25-71 (102)
65 4go7_X Aspartokinase; transfer 75.7 3.8 0.00013 36.8 5.4 52 83-140 122-173 (200)
66 2bjd_A Acylphosphatase; hypert 75.2 4.3 0.00015 32.7 5.1 45 171-215 28-74 (101)
67 1sc6_A PGDH, D-3-phosphoglycer 75.1 1.8 6.1E-05 42.4 3.4 35 314-348 331-365 (404)
68 3k5p_A D-3-phosphoglycerate de 75.0 2.4 8.1E-05 42.1 4.3 34 313-346 342-375 (416)
69 2qmw_A PDT, prephenate dehydra 74.6 1.7 5.7E-05 40.8 2.9 34 312-345 184-220 (267)
70 1ygy_A PGDH, D-3-phosphoglycer 74.5 1.7 5.8E-05 43.6 3.1 36 313-348 453-488 (529)
71 2vh7_A Acylphosphatase-1; hydr 73.4 4.7 0.00016 32.1 4.9 44 171-214 22-67 (99)
72 1gtd_A MTH169; synthetase, FGA 72.9 5.4 0.00018 31.1 5.0 44 80-128 3-50 (85)
73 2h9z_A Hypothetical protein HP 72.6 8.4 0.00029 30.2 6.1 67 78-148 14-85 (86)
74 2dgb_A Hypothetical protein PU 72.0 7.5 0.00026 30.2 5.7 44 80-128 4-51 (84)
75 1aps_A Acylphosphatase; hydrol 71.0 4.3 0.00015 32.3 4.1 45 171-215 21-67 (98)
76 2gv1_A Probable acylphosphatas 70.5 6.4 0.00022 30.9 5.0 43 171-213 18-62 (92)
77 3ab4_A Aspartokinase; aspartat 69.8 6.2 0.00021 38.3 5.8 43 82-128 347-392 (421)
78 2lxf_A Uncharacterized protein 69.4 4.4 0.00015 34.0 4.1 45 171-215 48-94 (121)
79 1q5y_A NIKR, nickel responsive 69.1 28 0.00097 26.9 8.4 70 80-149 6-77 (85)
80 3mgj_A Uncharacterized protein 68.5 11 0.00036 32.0 6.2 53 90-142 15-71 (118)
81 3c1m_A Probable aspartokinase; 68.4 5.4 0.00018 39.6 5.1 45 82-128 407-454 (473)
82 2wvf_A Hpnikr, putative nickel 68.2 28 0.00095 29.7 8.9 73 78-150 64-138 (148)
83 2hza_A Nickel-responsive regul 66.2 32 0.0011 28.5 8.7 73 78-150 52-126 (133)
84 3tvi_A Aspartokinase; structur 65.0 8.5 0.00029 38.3 5.8 46 81-128 376-424 (446)
85 1t4a_A PURS; tetramer, complex 62.9 16 0.00055 28.3 5.9 54 81-139 3-65 (84)
86 2zw2_A Putative uncharacterize 59.0 18 0.00063 28.6 5.7 45 79-128 5-54 (92)
87 2bj7_A Nickel responsive regul 57.3 63 0.0022 26.9 9.0 73 78-150 54-128 (138)
88 1vq3_A Phosphoribosylformylgly 56.5 37 0.0013 27.3 7.1 55 80-139 16-80 (94)
89 1o51_A Hypothetical protein TM 55.3 9.3 0.00032 31.5 3.5 45 182-231 62-107 (114)
90 1jo0_A Hypothetical protein HI 55.1 62 0.0021 26.0 8.3 37 159-197 44-84 (98)
91 2lqj_A Mg2+ transport protein; 54.5 37 0.0013 26.9 6.8 73 76-149 5-84 (94)
92 2hh2_A KH-type splicing regula 52.8 25 0.00086 28.0 5.6 42 174-216 27-76 (107)
93 3luy_A Probable chorismate mut 51.8 8.5 0.00029 37.1 3.1 31 315-345 207-239 (329)
94 3mah_A Aspartokinase; aspartat 50.4 11 0.00038 31.4 3.3 39 86-128 98-136 (157)
95 1tdj_A Biosynthetic threonine 48.3 78 0.0027 32.1 9.6 118 77-219 336-461 (514)
96 1rq8_A Conserved hypothetical 48.3 78 0.0027 25.9 7.9 41 159-199 43-85 (104)
97 2yx5_A UPF0062 protein MJ1593; 48.1 18 0.0006 27.9 3.8 43 81-128 3-50 (83)
98 1ib8_A Conserved protein SP14. 47.8 1.3E+02 0.0046 25.8 11.2 101 93-201 15-139 (164)
99 2dcl_A Hypothetical UPF0166 pr 45.2 15 0.0005 30.9 3.2 46 182-232 58-104 (127)
100 2p2r_A Poly(RC)-binding protei 43.7 48 0.0016 24.4 5.5 41 174-215 25-70 (76)
101 2cdq_A Aspartokinase; aspartat 43.7 19 0.00065 36.4 4.3 51 86-140 429-479 (510)
102 1wvn_A Poly(RC)-binding protei 41.5 53 0.0018 24.5 5.6 41 174-215 26-71 (82)
103 2j0w_A Lysine-sensitive aspart 41.1 29 0.00099 34.3 5.1 78 78-169 305-394 (449)
104 1zzk_A Heterogeneous nuclear r 39.6 59 0.002 24.3 5.5 41 174-215 27-72 (82)
105 1dtj_A RNA-binding neurooncolo 39.1 62 0.0021 23.6 5.5 41 174-215 23-71 (76)
106 1x4n_A FAR upstream element bi 38.4 61 0.0021 24.9 5.6 41 174-215 35-80 (92)
107 1vig_A Vigilin; RNA-binding pr 37.1 58 0.002 23.9 5.1 55 160-215 3-68 (71)
108 3krm_A Insulin-like growth fac 36.9 28 0.00094 28.8 3.6 41 174-215 105-152 (163)
109 1j5k_A Heterogeneous nuclear r 36.7 56 0.0019 24.9 5.1 41 174-215 34-79 (89)
110 3dhx_A Methionine import ATP-b 36.4 92 0.0031 24.6 6.5 51 92-143 37-89 (106)
111 1ec6_A RNA-binding protein NOV 36.0 82 0.0028 23.7 5.9 41 174-215 23-71 (87)
112 2hh3_A KH-type splicing regula 35.5 48 0.0016 26.6 4.7 41 174-215 31-76 (106)
113 2axy_A Poly(RC)-binding protei 34.6 56 0.0019 24.1 4.6 40 174-214 25-67 (73)
114 2jvz_A KH type-splicing, FAR u 34.0 1.7E+02 0.0057 23.8 8.0 41 174-215 111-156 (164)
115 1vr9_A CBS domain protein/ACT 32.6 9.3 0.00032 32.8 0.0 57 82-140 141-198 (213)
116 3vth_A Hydrogenase maturation 29.2 61 0.0021 34.6 5.4 44 171-215 24-69 (761)
117 1we8_A Tudor and KH domain con 28.8 83 0.0028 24.7 5.0 40 175-215 36-82 (104)
118 3lh2_S 4E10_1VI7A_S0_002_N (T8 28.5 28 0.00095 25.7 2.0 56 161-216 7-63 (76)
119 4djd_C C/Fe-SP, corrinoid/iron 27.4 1.6E+02 0.0054 29.7 7.8 129 78-219 90-227 (446)
120 2dch_X Putative homing endonuc 26.8 3.3E+02 0.011 24.0 11.0 118 81-219 42-169 (216)
121 2qrr_A Methionine import ATP-b 25.8 1.6E+02 0.0056 22.6 6.2 52 91-143 38-91 (101)
122 4e9j_A General secretion pathw 25.8 92 0.0031 27.8 5.3 82 122-218 150-242 (246)
123 2jsx_A Protein NAPD; TAT, proo 25.7 2.5E+02 0.0084 22.2 8.9 68 79-150 5-74 (95)
124 4dad_A Putative pilus assembly 25.6 2E+02 0.007 21.6 6.7 29 83-111 23-52 (146)
125 2qsw_A Methionine import ATP-b 24.6 1.5E+02 0.0052 22.8 5.8 52 91-143 38-91 (100)
126 2gkg_A Response regulator homo 23.9 1.5E+02 0.0051 21.3 5.4 32 77-109 3-34 (127)
127 4hhu_A OR280; engineered prote 23.4 2.8E+02 0.0097 23.9 7.6 86 119-213 2-101 (170)
128 1ulr_A Putative acylphosphatas 21.9 65 0.0022 24.8 3.1 35 117-151 38-72 (88)
129 2ctm_A Vigilin; K homology typ 21.6 1.1E+02 0.0037 23.9 4.4 52 163-215 18-81 (95)
130 3i42_A Response regulator rece 21.4 2.1E+02 0.0071 20.9 5.8 99 83-182 6-118 (127)
131 3hdv_A Response regulator; PSI 21.2 1.9E+02 0.0064 21.4 5.5 29 83-111 10-38 (136)
132 3hv2_A Response regulator/HD d 20.6 1.8E+02 0.0062 22.2 5.5 28 83-110 17-44 (153)
133 2cpq_A FragIle X mental retard 20.3 89 0.003 24.9 3.6 42 175-216 36-78 (91)
134 2rdm_A Response regulator rece 20.2 2.6E+02 0.0088 20.4 7.8 28 83-110 8-35 (132)
No 1
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=7.7e-53 Score=381.79 Aligned_cols=159 Identities=38% Similarity=0.635 Sum_probs=153.1
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC-
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN- 153 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~- 153 (349)
+|+|+|+|+++|+||+|+||+++|++|||||+||++++++++++ |||+|+++++.++||.+||+||+||++|.++++
T Consensus 27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~ 106 (193)
T 2fgc_A 27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL 106 (193)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence 57999999999999999999999999999999999999999985 888999999999999999999999999999999
Q ss_pred -chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 018896 154 -EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (349)
Q Consensus 154 -~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg 232 (349)
.+.|+||||||||+++++ |.||++++++|||||||+++++++||+||+++||++|+++|+||||+|++|||++||.||
T Consensus 107 ~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E~~RtG~val~Rg 185 (193)
T 2fgc_A 107 PENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW 185 (193)
T ss_dssp GGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred CCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEEEEccChhheecC
Confidence 999999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 018896 233 KLGD 236 (349)
Q Consensus 233 ~~~~ 236 (349)
+...
T Consensus 186 ~~~~ 189 (193)
T 2fgc_A 186 NVKE 189 (193)
T ss_dssp CC--
T ss_pred Cccc
Confidence 7543
No 2
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=4.4e-52 Score=367.91 Aligned_cols=157 Identities=41% Similarity=0.641 Sum_probs=153.2
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~ 155 (349)
|+|+|+++++|+||+|+||+++|++|||||+||+++++++++. |||+|+++++.++||.+||+||+||++|.++++.+
T Consensus 3 m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~~ 82 (165)
T 2pc6_A 3 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEG 82 (165)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGSC
T ss_pred eEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 5899999999999999999999999999999999999998874 89999999999999999999999999999999999
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 018896 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (349)
Q Consensus 156 ~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~~ 234 (349)
+|+||||||||++++++|.||++++++|||+|||+++++++||+||+++||++|+++|+||||+|++|||.+||.||++
T Consensus 83 ~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~~ 161 (165)
T 2pc6_A 83 YVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGER 161 (165)
T ss_dssp EEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTTC
T ss_pred eeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999975
No 3
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.6e-51 Score=363.61 Aligned_cols=158 Identities=37% Similarity=0.653 Sum_probs=153.3
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
||+|+|+|+++|+||+|+||+++|++|||||+||+++++++++. |||+++++++.++||++||+||+||++|.++++.
T Consensus 1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 67999999999999999999999999999999999999998864 8999999999999999999999999999999999
Q ss_pred hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecCc
Q 018896 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRREK 233 (349)
Q Consensus 155 ~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fG-IlEiaRTG~iAL~Rg~ 233 (349)
++|+||||||||++++++|.||++++++|||+|||+++++++||+||+++||++|+++|+||| |+|++|||.+||.||+
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~ 160 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD 160 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999997
Q ss_pred C
Q 018896 234 L 234 (349)
Q Consensus 234 ~ 234 (349)
+
T Consensus 161 ~ 161 (164)
T 2f1f_A 161 K 161 (164)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=99.28 E-value=1.3e-12 Score=118.55 Aligned_cols=48 Identities=40% Similarity=0.636 Sum_probs=35.5
Q ss_pred ccccccccccCCCCccceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 297 LDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 297 l~~~~~~~~~~~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
.|+|||-+.+. .++|+|+++|+|+||||+||+|||++|||||+||+|+
T Consensus 16 ~~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~ 63 (193)
T 2fgc_A 16 NLYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVG 63 (193)
T ss_dssp ---------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEE
T ss_pred chhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEee
Confidence 58999988664 4699999999999999999999999999999999986
No 5
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=99.20 E-value=6.6e-10 Score=92.55 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=90.7
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~ 155 (349)
.||+|+|+++++|+||+|+||+++|+++|+||+++++..+.+++.+++++. +.+...+++++..-.+...
T Consensus 3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~-d~~~a~~~L~~~G~~v~~~--------- 72 (144)
T 2f06_A 3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS-DPDKAYKALKDNHFAVNIT--------- 72 (144)
T ss_dssp SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES-CHHHHHHHHHHTTCCEEEE---------
T ss_pred ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC-CHHHHHHHHHHcCCeEeee---------
Confidence 588999999999999999999999999999999999998888887667654 5555666666543222111
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCCc
Q 018896 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD---I-SEH--ALTIEVTGDPGKMVAVQRNLSKFGI 218 (349)
Q Consensus 156 ~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVD---v-s~~--sltIEvTG~~~KIdafi~~L~~fGI 218 (349)
.+.-+.++-.|..-+++.++....+.+|.. . ++. +++++. +..+..++.|+.-|.
T Consensus 73 ----svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~ 133 (144)
T 2f06_A 73 ----DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV 133 (144)
T ss_dssp ----EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred ----eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence 345556777777788888888888888843 2 333 344555 356666777776664
No 6
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.89 E-value=1.4e-08 Score=76.58 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=65.0
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt~~~ 155 (349)
....|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.+. .+...+++++++|+++.+|.+|..+..-+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~ 82 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLE 82 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCC
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence 4578999999999999999999999999999999987655233566555 45678999999999999999998776543
No 7
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.85 E-value=2.6e-08 Score=86.72 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=79.4
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCee----eeEEEecCCc
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVN----VIKVEDISNE 154 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiD----VikV~dlt~~ 154 (349)
+++|+|+..|+||++++|+++|+++|+||..+....+.+.-.+++++..++...++|.++|.++.+ .+.+...+..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 85 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTSPH 85 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 689999999999999999999999999999999887655445788887666678889988876543 4445544433
Q ss_pred hhhhhheeeEEEeCCCCCHH----HHHHHHHhcCcEEEEec
Q 018896 155 PHVERELMLIKLNGDTSTWP----EIMWLVDIFRAKVVDIS 191 (349)
Q Consensus 155 ~~V~RELaLIKV~~~~~~R~----EI~~la~iFrAkIVDvs 191 (349)
+ -.++....+|.+....|+ +|.++...+++.|.++.
T Consensus 86 ~-~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~ 125 (192)
T 1u8s_A 86 D-HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS 125 (192)
T ss_dssp C-CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred C-CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhh
Confidence 3 244444444443322344 55566667788887654
No 8
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.59 E-value=5.9e-08 Score=74.34 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=56.5
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC-ChHHHHHHHHHHhcCeeeeE
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIK 147 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g-dd~~veQLiKQL~KLiDVik 147 (349)
+.+.|++...|+||+|++|+++++++|+||.++......+...+++.++. +...+++|.++|.++-+...
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~ 74 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN 74 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999876633346666553 33568999999988765533
No 9
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=97.95 E-value=1.9e-05 Score=73.39 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=61.9
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC----C-CcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----D-KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te----d-~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
|..+|.+..+|+||+|+.|+.+++..+.||.++++.... + ...++|-++.. .++.++++|+++-+|.+|+.+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence 456999999999999999999999999999999998765 3 23466556544 8999999999999999999887
Q ss_pred Cchhhh
Q 018896 153 NEPHVE 158 (349)
Q Consensus 153 ~~~~V~ 158 (349)
.-+.++
T Consensus 81 ~~~~i~ 86 (223)
T 1y7p_A 81 SFERVF 86 (223)
T ss_dssp CHHHHT
T ss_pred chhhhc
Confidence 655554
No 10
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.52 E-value=0.0011 Score=54.40 Aligned_cols=69 Identities=12% Similarity=0.304 Sum_probs=58.7
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
.|.|...|++|+|+.|+.+++..++||.++.+.+. |.+.+.+. .+...+..|..++.++.++..+....
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~ 71 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence 47899999999999999999999999999999655 55666665 45677999999999999999887654
No 11
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=97.51 E-value=0.00054 Score=58.74 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=80.7
Q ss_pred EEEEEEE-EcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 79 RHTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 79 ~htISIl-VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
...|+|+ +.|+||.+.+|...|++.|+||+.++.+.+.+ | .++++|+.++ ....++++++.+-...-.|
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i------ 97 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASI------ 97 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEE------
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceE------
Confidence 3467777 89999999999999999999999999876654 4 4888887433 2233444443222232121
Q ss_pred hhhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 018896 155 PHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG 217 (349)
Q Consensus 155 ~~V~RELaLIKV~~~~-----~~R~EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~-~fG 217 (349)
.+.+.++++-|-... .--..+++....++..| +..+..++.+=+ +.+..+..++.|. .|+
T Consensus 98 -~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv--~~~d~~~av~~Lh~~f~ 165 (167)
T 2re1_A 98 -DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI--DEKYMELATRVLHKAFN 165 (167)
T ss_dssp -EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred -EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE--eHHHHHHHHHHHHHHhc
Confidence 245678888886532 33457888877777777 444666666555 3344555555554 354
No 12
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=97.47 E-value=0.00047 Score=67.72 Aligned_cols=73 Identities=14% Similarity=0.302 Sum_probs=62.4
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
.+.|.+.=+|+||++.+|+.+|++.|+||.++.++...+.+++.|-+++....-+.++++|+++..|++|..+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 4568899999999999999999999999999999985555667777886644667899999999999998754
No 13
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.44 E-value=0.002 Score=56.68 Aligned_cols=116 Identities=12% Similarity=0.123 Sum_probs=72.7
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh----HHHHHHHHHHhcCeeeeEEEe-c
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE----RVLRQVVEQLNKLVNVIKVED-I 151 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd----~~veQLiKQL~KLiDVikV~d-l 151 (349)
.++++|.|...|+||++++|++.++++|.||.........+.=.|++.+..++ ...++|.+.|.++..=..+.. +
T Consensus 3 ~~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 82 (195)
T 2nyi_A 3 TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQISTRRASSV 82 (195)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTCEEEEEECCCC
T ss_pred ceEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHHHHhcCCeEEE
Confidence 36789999999999999999999999999999998886443212566665322 237788888876553211110 0
Q ss_pred CCc-hhhhhheeeEEEeCC--CCCHHHHHHHHHhcCcEEEEecC
Q 018896 152 SNE-PHVERELMLIKLNGD--TSTWPEIMWLVDIFRAKVVDISE 192 (349)
Q Consensus 152 t~~-~~V~RELaLIKV~~~--~~~R~EI~~la~iFrAkIVDvs~ 192 (349)
... ..-..+...+.|.++ +.--.+|-++.-.+++.|.++..
T Consensus 83 ~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~ 126 (195)
T 2nyi_A 83 AERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELET 126 (195)
T ss_dssp ----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred EeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEcee
Confidence 000 011234456666653 23334556666667777777644
No 14
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.27 E-value=0.00099 Score=57.75 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=51.5
Q ss_pred ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC------CCcE--EEEEEeC-ChHHHHHHHHHHhcCe
Q 018896 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV------DKAL--FTIVVSG-TERVLRQVVEQLNKLV 143 (349)
Q Consensus 74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te------d~gi--iTIVV~g-dd~~veQLiKQL~KLi 143 (349)
......+.|.+...|+||++++|+++|+++|+||+.+...... ..+. +++.+.. +....++|.++|.++.
T Consensus 88 ~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 88 QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALC 166 (192)
T ss_dssp CCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3445778999999999999999999999999999998877443 2344 5555553 3334677777776543
No 15
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.17 E-value=0.0011 Score=58.24 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=49.6
Q ss_pred cCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC----CCcE--EEEEEeC-ChHHHHHHHHHHhc
Q 018896 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DKAL--FTIVVSG-TERVLRQVVEQLNK 141 (349)
Q Consensus 75 ~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te----d~gi--iTIVV~g-dd~~veQLiKQL~K 141 (349)
....++.|.|...|+||++.+|+++|+++|.||..+...... ..++ |++.+.. +... ++|.+.|.+
T Consensus 89 ~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~ 161 (195)
T 2nyi_A 89 PDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSR 161 (195)
T ss_dssp TTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHH
Confidence 345779999999999999999999999999999999887443 3344 5555543 2333 667666653
No 16
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=97.16 E-value=0.0011 Score=66.12 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=57.6
Q ss_pred ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC---CcEEEEEEe-CChHHHHHHHHHHhcCeeee
Q 018896 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KALFTIVVS-GTERVLRQVVEQLNKLVNVI 146 (349)
Q Consensus 74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted---~giiTIVV~-gdd~~veQLiKQL~KLiDVi 146 (349)
.+-..+|.|.+.+.|+||||.+|+++|++.|++|+|+...+..+ ...+.|+++ ..+..+++.+++|++|-.|.
T Consensus 354 ~~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~ 430 (444)
T 3mtj_A 354 EAVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA 430 (444)
T ss_dssp GGCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred HHcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence 44468899999999999999999999999999999998765431 223666666 46888999999999986654
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.12 E-value=0.00029 Score=53.64 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.7
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
++.+|++...|+||+|++|+++++.+|.||.++..
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~ 38 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQ 38 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEe
Confidence 56899999999999999999999999999999864
No 18
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=96.99 E-value=0.0031 Score=62.70 Aligned_cols=73 Identities=15% Similarity=0.274 Sum_probs=62.3
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
.|.|.+.=+|.||+|.+|+.+|++.|+||+.+.-.-..+-++.-+=+++....-+.++++|+++..|++|..+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 5789999999999999999999999999999997766676776666664356678999999999999998754
No 19
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.94 E-value=0.0011 Score=66.72 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=56.5
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
..|.|-+...|+||++.+|+.++.+.|+||..+.++..+.. +++.|.++.. .-+.+.++|.++.+|.+|..+
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v 526 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence 35899999999999999999999999999999999987654 4577878642 234456666777777766644
No 20
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.86 E-value=0.00088 Score=50.06 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=31.4
Q ss_pred eeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN 347 (349)
Q Consensus 314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v 347 (349)
...|.+.+.|+||+|+.|+++|+..|.||.++.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~ 38 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVL 38 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEE
Confidence 5678999999999999999999999999998865
No 21
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.84 E-value=0.0026 Score=60.70 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=50.9
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHHh
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLN 140 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd--~~veQLiKQL~ 140 (349)
.|++++|++.-.|+||+.++||+.++++|.||..++.......++ |++.++.++ ...++|.+.++
T Consensus 19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~ 87 (302)
T 3o1l_A 19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFT 87 (302)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHH
T ss_pred ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHH
Confidence 578899999999999999999999999999999999886555665 666666432 24556655543
No 22
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.79 E-value=0.0025 Score=60.51 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=49.1
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCC----hHHHHHHHHHHh
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT----ERVLRQVVEQLN 140 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gd----d~~veQLiKQL~ 140 (349)
.|++++|++.-.|+||+.++||+.++++|.||..+........++ |++.++.+ ...+++|.+.++
T Consensus 7 ~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~ 77 (292)
T 3lou_A 7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFE 77 (292)
T ss_dssp -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHH
Confidence 456789999999999999999999999999999999875455565 56666543 233555655543
No 23
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.78 E-value=0.0026 Score=60.13 Aligned_cols=63 Identities=3% Similarity=-0.074 Sum_probs=47.7
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh-HHHHHHHHHH
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE-RVLRQVVEQL 139 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd-~~veQLiKQL 139 (349)
|.+++|++.-.|+||+.++||+.|+.+|.||..++.......++ |++.++.++ ...++|.+.+
T Consensus 6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f 71 (286)
T 3n0v_A 6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGL 71 (286)
T ss_dssp -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHH
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHH
Confidence 56689999999999999999999999999999999875455565 666666432 2345555444
No 24
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.72 E-value=0.003 Score=59.71 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=48.9
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHHh
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLN 140 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd--~~veQLiKQL~ 140 (349)
+.+++|++.-.|+||+.++||+.++++|.||..++...+...++ |++.++.++ ..+++|.+.++
T Consensus 4 ~~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~ 71 (288)
T 3obi_A 4 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFG 71 (288)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHH
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHH
Confidence 34689999999999999999999999999999999875555665 566555322 34566665553
No 25
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=96.71 E-value=0.0041 Score=51.33 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=30.7
Q ss_pred EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeee
Q 018896 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGL 114 (349)
Q Consensus 80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~ 114 (349)
..+.+-+.|+||++++|+.++++.|+||+.+....
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~ 107 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA 107 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc
Confidence 36777899999999999999999999998876654
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=96.64 E-value=0.018 Score=54.85 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=85.2
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChH--HHHHHHHHHhcCe---e-eeEE
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTER--VLRQVVEQLNKLV---N-VIKV 148 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~--~veQLiKQL~KLi---D-VikV 148 (349)
.++..|++.-.||||+.++|++.++++|.||..+..... .+. |++.++.++. ..++|.+.|..+- . -+++
T Consensus 10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 87 (415)
T 3p96_A 10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSI 87 (415)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEE
Confidence 357899999999999999999999999999999997653 355 5566665543 3466766665442 1 2444
Q ss_pred EecCCchhhhh-heeeEEEeCC---CCCHHHHHHHHHhcCcEEEEecCCE------EEEEEeCChh---HHH-HHHHHhc
Q 018896 149 EDISNEPHVER-ELMLIKLNGD---TSTWPEIMWLVDIFRAKVVDISEHA------LTIEVTGDPG---KMV-AVQRNLS 214 (349)
Q Consensus 149 ~dlt~~~~V~R-ELaLIKV~~~---~~~R~EI~~la~iFrAkIVDvs~~s------ltIEvTG~~~---KId-afi~~L~ 214 (349)
...+......+ ...++-+-.. ++.-.+|..+...++.+|-++..-+ +-+.+.+++. .+. ++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~ 167 (415)
T 3p96_A 88 ERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSS 167 (415)
T ss_dssp EECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred EECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhh
Confidence 44444322222 2333434332 2334456666666779888775544 3355556543 333 3334445
Q ss_pred cCCc
Q 018896 215 KFGI 218 (349)
Q Consensus 215 ~fGI 218 (349)
.+++
T Consensus 168 ~~~v 171 (415)
T 3p96_A 168 EEHV 171 (415)
T ss_dssp HHTC
T ss_pred hcCc
Confidence 5664
No 27
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=96.58 E-value=0.0044 Score=58.62 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=47.2
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHH
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQL 139 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL 139 (349)
++++|++.-.|+||+.++|++.++++|.||..++...+...++ |++.++.+....++|.+.+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f 69 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF 69 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999876566666 6666664432344555444
No 28
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=96.33 E-value=0.04 Score=47.68 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=77.0
Q ss_pred EEEEE-EEcCcccHHHHHHHHHhccCcceeeEeeeecC--CC-cEEEEEEeCChHHHHHHHHHHhcC---eeeeEEEecC
Q 018896 80 HTISV-FVGDESGIINRIAGVFARRGYNIESLAVGLNV--DK-ALFTIVVSGTERVLRQVVEQLNKL---VNVIKVEDIS 152 (349)
Q Consensus 80 htISI-lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te--d~-giiTIVV~gdd~~veQLiKQL~KL---iDVikV~dlt 152 (349)
-.|+| .+.|+||.+.+|...|++.|+||+.++.+... +. ..+++++..++ .++..+.|+++ .....+
T Consensus 16 ~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~~v---- 89 (178)
T 2dtj_A 16 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWTNV---- 89 (178)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCSEE----
T ss_pred EEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCCeE----
Confidence 45666 57999999999999999999999999876432 22 23677776332 23333444432 222222
Q ss_pred CchhhhhheeeEEEeCCC-CCHH----HHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 018896 153 NEPHVERELMLIKLNGDT-STWP----EIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG 217 (349)
Q Consensus 153 ~~~~V~RELaLIKV~~~~-~~R~----EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~~-fG 217 (349)
.+.+++++|-|-... ..++ .+++.....+-+| +..++.++.+=+ +.+..+..++.|.. |+
T Consensus 90 ---~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 90 ---LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ 157 (178)
T ss_dssp ---EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHHT
T ss_pred ---EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHc
Confidence 245788888886532 2232 4445444445555 444555555544 66667777776664 54
No 29
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=95.84 E-value=0.04 Score=52.22 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=56.7
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHHhcCeeeeEE
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g-i-iTIVV~g--dd~~veQLiKQL~KLiDVikV 148 (349)
-.+..|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... + + |-|-++| ++..+++.++.|++...-+++
T Consensus 198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki 274 (283)
T 2qmx_A 198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV 274 (283)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence 356788888899999999999999999999999999988764 3 2 4444554 567788899998887654443
No 30
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=95.58 E-value=0.034 Score=47.38 Aligned_cols=120 Identities=15% Similarity=0.196 Sum_probs=71.7
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecC-CCc--EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhhhhhe
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVEREL 161 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~g--iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V~REL 161 (349)
+.|+||.+.||.+.|++.|+||+.++.+.+. +.| -++++|..++ +...++++++.+-... .|. +++.+
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~ 95 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI 95 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence 4899999999999999999999999987653 344 4888887433 2233333333222222 333 45677
Q ss_pred eeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 162 MLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 162 aLIKV~~~~-----~~R~EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
+++-|-... .--+.+++.....+-+| +..++.++. +.=+.+..+..++.|..
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is--~vv~~~d~~~Av~~Lh~ 154 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRIS--VIIPAEYAEAALRAVHQ 154 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEEE--EEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEEE--EEEeHHHHHHHHHHHHH
Confidence 777775432 12234555555545555 444444333 33345556666666654
No 31
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=95.44 E-value=0.037 Score=52.04 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=54.9
Q ss_pred eEEEEEEEE---cCcccHHHHHHHHHhccCcceeeEeeeecCCC-c-E---EEEEEeCChHHHHHHHHHHhcCeeeeEE
Q 018896 78 KRHTISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L---FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 78 ~~htISIlV---eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g-i---iTIVV~gdd~~veQLiKQL~KLiDVikV 148 (349)
.+..|.+.+ .|+||.|.++.+.|+.||+|+..|.--|+... + + +.+. +-++..+.+.++.|++...-+++
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~ki 262 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVEM 262 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEE
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEE
Confidence 355777788 89999999999999999999999999888764 2 2 3444 55677788899988877654443
No 32
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=95.25 E-value=0.082 Score=50.81 Aligned_cols=69 Identities=22% Similarity=0.348 Sum_probs=53.3
Q ss_pred CceEEEEEEEE-cCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeC--ChHHHHHHHHHHhcCee
Q 018896 76 KVKRHTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSG--TERVLRQVVEQLNKLVN 144 (349)
Q Consensus 76 ~m~~htISIlV-eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~g--dd~~veQLiKQL~KLiD 144 (349)
...+..|.+.+ +|+||.|.++.+.|+.||+|+..|.--|+...- + |-|-+.| ++..+.+.++.|++...
T Consensus 198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~ 272 (313)
T 3mwb_A 198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP 272 (313)
T ss_dssp SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence 34577888888 499999999999999999999999988876542 3 5555554 56678888888876543
No 33
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=95.22 E-value=0.072 Score=46.63 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=72.6
Q ss_pred EEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcE--EEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhhhhh
Q 018896 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (349)
Q Consensus 85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~gi--iTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V~RE 160 (349)
-+.|+||.+.||.+.|++.|+||+.++...++ +.+. ++++++.++ +...++++++.+-...-+|. +.+.
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~ 95 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH 95 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence 47899999999999999999999999876555 2454 888887554 33334444433222222222 3456
Q ss_pred eeeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 018896 161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FG 217 (349)
Q Consensus 161 LaLIKV~~~~-~~----R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~-fG 217 (349)
+++|-|--.. .. -+.+++.....+-+|.-++...+.|-+.=+.+..+..++.|.. |+
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFG 158 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHHHHHHT
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHHHHc
Confidence 7777764321 12 2244555544455554443333333344445555555555543 44
No 34
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=94.89 E-value=0.15 Score=49.82 Aligned_cols=130 Identities=16% Similarity=0.244 Sum_probs=81.1
Q ss_pred EEEEEEE-EcCcccHHHHHHHHHhccCcceeeEeeeecC-CCc--EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCC
Q 018896 79 RHTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 79 ~htISIl-VeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~g--iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
...|+|+ +.|+||.+.||...|++.|+||+.++...++ +.+ .++++|+.++ ....++++++.+-+..-.|.
T Consensus 264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~---- 339 (421)
T 3ab4_A 264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVL---- 339 (421)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEE----
T ss_pred EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEE----
Confidence 3467777 7999999999999999999999999763332 134 4888888533 33445555554333322222
Q ss_pred chhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 018896 154 EPHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG 217 (349)
Q Consensus 154 ~~~V~RELaLIKV~~~-----~~~R~EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~~-fG 217 (349)
+++.+++|-|-.. +.--+.+++.....+-+| +..++.++.+=+ +.+..+..++.|.. |.
T Consensus 340 ---~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV--~~~d~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 340 ---YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ 406 (421)
T ss_dssp ---EECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred ---EeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHh
Confidence 4567888887543 223346666655555555 555666555544 34556666666653 55
No 35
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=94.71 E-value=0.072 Score=45.03 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=68.9
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEE
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 166 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV 166 (349)
.++||++.||.+.|++.|+||+-++.++ ..++++++..+ .++++++.|.+. -.|. +.+.+++|-|
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~~---~~v~-------~~~~~a~vsv 93 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSDI---GDVT-------VDKDMVIICI 93 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTTT---EEEE-------EEEEEEEEEE
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhcc---CeEE-------EeCCeEEEEE
Confidence 4789999999999999999999998543 36888887555 577888888773 1222 3457788886
Q ss_pred eCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 018896 167 NGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (349)
Q Consensus 167 ~~~-----~~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~ 214 (349)
--. +..-+.+++... +-.|.-++ .....|.+.=+.+..+..++.|.
T Consensus 94 vG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh 146 (157)
T 3mah_A 94 VGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALS 146 (157)
T ss_dssp EC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred ECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHH
Confidence 533 222334444444 44443333 23333444445555565665554
No 36
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=94.22 E-value=0.094 Score=52.73 Aligned_cols=73 Identities=11% Similarity=0.189 Sum_probs=54.8
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEE---eCChHHHHHHHHHHhcC-eeeeEE
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVV---SGTERVLRQVVEQLNKL-VNVIKV 148 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV---~gdd~~veQLiKQL~KL-iDVikV 148 (349)
...+..|.+.+.|+||.|.++.+.|+.+|+|+..|.--|+... +-..+-| +.++..+.++++.|.+. ..-++|
T Consensus 31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vki 108 (429)
T 1phz_A 31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHE 108 (429)
T ss_dssp SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEE
Confidence 3456778888899999999999999999999999998887654 3222222 33455688888988888 554444
No 37
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=94.21 E-value=0.19 Score=48.60 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=51.2
Q ss_pred EEEEEEEEc--CcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeC--ChHHHHHHHHHHhcCeeeeEE
Q 018896 79 RHTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 79 ~htISIlVe--NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~g--dd~~veQLiKQL~KLiDVikV 148 (349)
+.++.+++. |+||.|.++.+.|++||+|+..|.--|+...- + |=|-++| ++..+.+.++.|++...-+++
T Consensus 206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki 282 (329)
T 3luy_A 206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT 282 (329)
T ss_dssp EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 344444544 79999999999999999999999988887642 2 4455655 456788888888777544433
No 38
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=92.44 E-value=0.15 Score=45.97 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=72.4
Q ss_pred EEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-c--EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhhhhh
Q 018896 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (349)
Q Consensus 85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g--iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V~RE 160 (349)
-+.|+||++.||-+.|++.|+||+-++.+.++.. + .++.++..++ .....+.+++.+-+...+|. ++..
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~-------~~~~ 114 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH 114 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEE-------EECC
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEE-------EecC
Confidence 4789999999999999999999999988766532 2 3677776433 33444444443333333333 4455
Q ss_pred eeeEEEeCCC-CC----HHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CCc
Q 018896 161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FGI 218 (349)
Q Consensus 161 LaLIKV~~~~-~~----R~EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~~-fGI 218 (349)
++.|-|--.. .. -+.+++....-+-+| +.-++-.+.+=+ +.++.+..++.|.. |++
T Consensus 115 iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV--~~~d~~~Av~aLH~~F~L 178 (200)
T 4go7_X 115 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLC--RDTELDKAVVALHEAFGL 178 (200)
T ss_dssp EEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHHTC
T ss_pred eeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEE--eHHHHHHHHHHHHHHhCC
Confidence 6666553221 12 224444444333344 554555444443 56666666666664 664
No 39
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=90.82 E-value=0.57 Score=37.04 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=47.3
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 018896 163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA 222 (349)
Q Consensus 163 LIKV~~~~--~~R~EI~~la~iFrAkI-------VDv---s~~sltIEvTG~~~KIdafi~~L~~fGI-lEia 222 (349)
++|+.... ...+-|.++++.|+..+ -.+ .-..+++|+.|++++++++++.|+..|+ +|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 78887654 45567999999986543 332 3378999999999999999999999996 5765
No 40
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=90.29 E-value=1.6 Score=35.02 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=58.9
Q ss_pred CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCeeee
Q 018896 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVI 146 (349)
Q Consensus 76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLiDVi 146 (349)
+.+...+.|.|+|+--+=.+|=.++.+-|-.|..=.==|..+. ++|.++++++.+.+..|...|.+|..|-
T Consensus 4 ~~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 4 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp CCEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred ceeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 4567899999999998888999999999999975433354444 4699999999999999999999998774
No 41
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=89.80 E-value=0.55 Score=37.05 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=46.5
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 018896 163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA 222 (349)
Q Consensus 163 LIKV~~~~--~~R~EI~~la~iFrAkI-------VDv---s~~sltIEvTG~~~KIdafi~~L~~fGI-lEia 222 (349)
++|+.... ...+-|.++++.|+..+ -.+ .-..|++|+.|++++++++++.|+..|+ +|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 77777643 45667999999886543 332 3478999999999999999999999996 5664
No 42
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=89.40 E-value=0.55 Score=37.39 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=47.2
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCc-------EEEEe---cCCEEEEEEeC-ChhHHHHHHHHhccCCc-EEEee
Q 018896 163 LIKLNGDT--STWPEIMWLVDIFRA-------KVVDI---SEHALTIEVTG-DPGKMVAVQRNLSKFGI-KELAR 223 (349)
Q Consensus 163 LIKV~~~~--~~R~EI~~la~iFrA-------kIVDv---s~~sltIEvTG-~~~KIdafi~~L~~fGI-lEiaR 223 (349)
++|+.... ...+-|.++++.|+. +|-.+ .-..+++|+.| ++++++++++.|+..|+ +|...
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg 96 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 78887653 455668999998754 44443 34789999999 89999999999999996 67763
No 43
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=88.78 E-value=2.3 Score=42.23 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=71.2
Q ss_pred EEEEEEE---EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHH--------hcCeee
Q 018896 79 RHTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL--------NKLVNV 145 (349)
Q Consensus 79 ~htISIl---VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL--------~KLiDV 145 (349)
.-.|+|. ..|+||++.||...|++.|+||+-++.+.++ ..++++|+.++ +.++.|.+.+ ++-+..
T Consensus 318 ~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse--~~Is~~V~~~d~~~a~~~L~~~l~~~~~~~~~~~~~~ 395 (473)
T 3c1m_A 318 VALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLI 395 (473)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEEGGGHHHHHHHHHHHHCC----CTTSCCCE
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCC--CEEEEEEechHHHHHHHHHHHHHhhhccccccccccc
Confidence 3456666 4789999999999999999999999975443 25888887533 3344444344 221111
Q ss_pred eEEEecCCchhhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc
Q 018896 146 IKVEDISNEPHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS 214 (349)
Q Consensus 146 ikV~dlt~~~~V~RELaLIKV~~~~-----~~R~EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~ 214 (349)
-.|. +++.+++|-|-... ..-+.+++.....+-+| +.-+...+.|-+.=+.+..+..++.|.
T Consensus 396 ~~v~-------~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtSe~~Is~vV~~~d~~~Av~aLh 464 (473)
T 3c1m_A 396 RDVS-------VDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 464 (473)
T ss_dssp EEEE-------EEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHH
T ss_pred ceEE-------EeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCCCceEEEEEcHHHHHHHHHHHH
Confidence 1222 34677777775432 12234555554445555 441122222333334444555555554
No 44
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=88.76 E-value=0.92 Score=38.52 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=35.3
Q ss_pred EEEEEEEEcC---cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 79 RHTISVFVGD---ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 79 ~htISIlVeN---kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
...+++.-.+ +||++.|+...|++.|+||+.++ + ....++++++.+
T Consensus 103 ~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is---t-se~~is~vv~~~ 151 (167)
T 2re1_A 103 VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS---T-SEIKVSVLIDEK 151 (167)
T ss_dssp EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE---E-CSSEEEEEEEGG
T ss_pred EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE---c-ccCEEEEEEeHH
Confidence 3456666655 99999999999999999999986 2 233577888743
No 45
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=88.39 E-value=1.3 Score=41.88 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=48.1
Q ss_pred cCceEEEEEEEEcC-cccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEeCChHHHHHHHHHHhcC
Q 018896 75 SKVKRHTISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTERVLRQVVEQLNKL 142 (349)
Q Consensus 75 ~~m~~htISIlVeN-kPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~gdd~~veQLiKQL~KL 142 (349)
++..++.+.++..+ .||.+.+|+.+++.+|.||+.+.--. +.+.. +.+.+..++....++..++.++
T Consensus 97 ~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~-~~~~~~~~~~v~~~~~~~~~l~~~l~~l 165 (415)
T 3p96_A 97 REPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVS-DYPVIGLELRVSVPPGADEALRTALNRV 165 (415)
T ss_dssp CCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEE-SSSSEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeecc-CCCceEEEEEeeCCCCCHHHHHHHHHHH
Confidence 45567899999999 99999999999999999999887543 33433 5555554444455555555543
No 46
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=87.98 E-value=1.3 Score=45.45 Aligned_cols=127 Identities=10% Similarity=0.147 Sum_probs=82.7
Q ss_pred EEcCcccHHHHHHHHHhccCcceeeEeeeecCC--Cc----EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhh
Q 018896 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KA----LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (349)
Q Consensus 85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~g----iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V 157 (349)
-+.|+||+..||.+.+++.|+|++-+.....+. .+ -+++++..++ ....++++++.+-++-.+|. +
T Consensus 451 ~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~~~~v~-------~ 523 (600)
T 3l76_A 451 HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAAIV-------V 523 (600)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTSTTCEEE-------E
T ss_pred cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcCCceEE-------E
Confidence 578999999999999999999999999887663 13 4778886332 33444444444433322333 4
Q ss_pred hhheeeEEEeC-----CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCc
Q 018896 158 ERELMLIKLNG-----DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGI 218 (349)
Q Consensus 158 ~RELaLIKV~~-----~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~-fGI 218 (349)
+..+++|-|-- .+..-+.+++....-+-+|.=++..-+.|-+.=+.+..+..++.|.. |++
T Consensus 524 ~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~Av~alh~~F~l 590 (600)
T 3l76_A 524 NKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFNL 590 (600)
T ss_dssp ECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTT
T ss_pred eCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHHHHHHHHHHhCC
Confidence 55677766632 23344466666666666666665555666666667777777777754 764
No 47
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=87.79 E-value=1.5 Score=37.08 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=33.7
Q ss_pred EEEEEEcC---cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 81 TISVFVGD---ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 81 tISIlVeN---kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
.+++.-.+ +||++.|+...+++.|+||.-++ .+ + -.+.++|+.+
T Consensus 97 ~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e-~~is~vv~~~ 143 (167)
T 2dt9_A 97 KVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-E-VRISVIIPAE 143 (167)
T ss_dssp EEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-S-SEEEEEEEGG
T ss_pred EEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-C-CEEEEEEeHH
Confidence 36666655 99999999999999999998776 22 2 2677888744
No 48
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=87.72 E-value=0.96 Score=38.96 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=37.6
Q ss_pred EEEEEEc---CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 81 TISVFVG---DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 81 tISIlVe---NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
.|++.-. ++||++.|+...|++.|+||+-++ .++ -.+.++|+.+ ..++.++.|.
T Consensus 97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe--~~Is~vV~~~--d~~~Av~~Lh 153 (178)
T 2dtj_A 97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLIRED--DLDAAARALH 153 (178)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEEEGG--GHHHHHHHHH
T ss_pred EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEEeHH--HHHHHHHHHH
Confidence 4555544 899999999999999999999986 222 3467777533 2444444444
No 49
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=87.63 E-value=3.1 Score=42.76 Aligned_cols=134 Identities=13% Similarity=0.178 Sum_probs=84.9
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEeCCh-HHHHHHHHHHhcCe-------eeeE
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTE-RVLRQVVEQLNKLV-------NVIK 147 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~gdd-~~veQLiKQL~KLi-------DVik 147 (349)
+..-+|. -+.++||.+.||.+.|++.|+||+-++.+..+.. .-+++++..++ ....++++++.+-+ ...+
T Consensus 270 ~~~i~i~-~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~ 348 (600)
T 3l76_A 270 QAKVALL-RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAE 348 (600)
T ss_dssp CEEEEEE-EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSE
T ss_pred EEEEEEe-CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcce
Confidence 3333444 5678999999999999999999999987765543 23788887443 33344444443322 2223
Q ss_pred EEecCCchhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCc
Q 018896 148 VEDISNEPHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGI 218 (349)
Q Consensus 148 V~dlt~~~~V~RELaLIKV~~~-----~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~-fGI 218 (349)
|. +++.+++|-|--. +..-..+++.....+.+|.-++....-|.+.=+.+..+..++.|.. |..
T Consensus 349 v~-------~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~ 418 (600)
T 3l76_A 349 II-------VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGV 418 (600)
T ss_dssp EE-------EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTC
T ss_pred eE-------ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcc
Confidence 32 5677888888533 3445577777777777765554444444455555666677777765 554
No 50
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=87.25 E-value=3.3 Score=41.27 Aligned_cols=117 Identities=14% Similarity=0.232 Sum_probs=75.7
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH--HHHHHHHHHhcCeeeeEEEecCCchhhhhheeeE
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VLRQVVEQLNKLVNVIKVEDISNEPHVERELMLI 164 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~--~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLI 164 (349)
.++||.+.||...|++.|+||+.++.+ ..-++++++.++. .++++.+.|.+..+.-+|. +.+.+++|
T Consensus 309 ~~~~g~~~~if~~l~~~~i~vd~i~~~----~~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA~V 377 (446)
T 3tvi_A 309 NSEVGFCRKILSILEMYGVSFEHMPSG----VDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMALV 377 (446)
T ss_dssp GGSTTHHHHHHHHHHTTTCCEEEBCEE----TTEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEEEE
T ss_pred CccHHHHHHHHHHHHHcCCcEEEEecC----CCEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeEEE
Confidence 579999999999999999999988743 2357888875442 4677777777655543333 55678888
Q ss_pred EEeC-----CCCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 018896 165 KLNG-----DTSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (349)
Q Consensus 165 KV~~-----~~~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~ 214 (349)
-|-- .+..-+.+++.....+-+|.-++ ...+.|-+.=+.+..+..++.|.
T Consensus 378 SvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH 434 (446)
T 3tvi_A 378 ATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIY 434 (446)
T ss_dssp EEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHH
T ss_pred EEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHH
Confidence 8743 23344566776666667775544 33333333334455555555554
No 51
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=86.66 E-value=1.5 Score=35.16 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=46.5
Q ss_pred eeEEEeCCC--CCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 018896 162 MLIKLNGDT--STWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI-KEL 221 (349)
Q Consensus 162 aLIKV~~~~--~~R~EI~~la~iFrAkI------VDv----s~~sltIEvTG~~~KIdafi~~L~~fGI-lEi 221 (349)
.++|+.... ...+-|.++++.|+..+ ||- .-.++++|++|+++++++.++.|+..|+ +|+
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEv 94 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV 94 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 577776543 45678999999998554 233 5568999999999999999999999995 344
No 52
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=85.84 E-value=0.34 Score=48.35 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.2
Q ss_pred cceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 312 ~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
..++-|.+.|.|+||||+.|+++|+..|.+|+|+.
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~ 391 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMV 391 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEe
Confidence 36789999999999999999999999999999963
No 53
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=85.02 E-value=1.3 Score=35.50 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 26 GFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~ 72 (98)
T 3trg_A 26 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 72 (98)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHh
Confidence 56999999999887 7889999999999999999999999999986
No 54
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=80.75 E-value=10 Score=31.20 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=53.8
Q ss_pred eEEEEEEEEcCcccHHHHHHHHHhcc---CcceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896 78 KRHTISVFVGDESGIINRIAGVFARR---GYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 78 ~~htISIlVeNkPGVL~RItGLFsRR---GyNIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVikV 148 (349)
..+.+.|...+.++....|..++.+. +|.+ ++-++....+ +||.+. .+.++++.|=+.|.+...|+-|
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 46899999999999999999999988 8988 3445544444 566555 4678899999999988877755
No 55
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=80.39 E-value=1.1 Score=42.33 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=30.5
Q ss_pred cceeEEEEEEeCCCchhhhhhhhhccccccccee
Q 018896 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 312 ~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
..+..|.+.+.|+||.|.++-+.|+.||.|+-.|
T Consensus 198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkI 231 (283)
T 2qmx_A 198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKI 231 (283)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEE
Confidence 3578888999999999999999999999998665
No 56
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=79.80 E-value=3.1 Score=32.59 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 16 GFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 45888999999765 6688888889999999999999999999974
No 57
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=79.54 E-value=3.7 Score=32.04 Aligned_cols=44 Identities=5% Similarity=-0.042 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~ 214 (349)
.-|.-+.++|+.++ +.|-...+.++.+++.|++++|++|++.|+
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 16 GYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp SHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 45888999999765 668888888999999999999999999997
No 58
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=79.21 E-value=3.6 Score=35.08 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHhccCcceeeEeeeecCCCc-E----EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (349)
Q Consensus 89 kPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-i----iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~ 153 (349)
-|++|..|..+=...|..++++..++....+ + ++|.|.|+-..+-+-...|++|.-++.+.+++-
T Consensus 44 m~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~i 113 (147)
T 2rjz_A 44 VPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFEI 113 (147)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeEE
Confidence 4799999999999999999999988654333 2 899999999999999999999988888888753
No 59
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=79.10 E-value=3.9 Score=35.53 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=33.6
Q ss_pred EEEEE---EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 81 TISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 81 tISIl---VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
.+|+. ..++||++.|+...+++.|+||..++ +. +-.+.++|+.+
T Consensus 98 ~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is---tS-ei~Is~vV~~~ 144 (181)
T 3s1t_A 98 KVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS---TS-EIRISVLCRDT 144 (181)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE---EE-TTEEEEEEEGG
T ss_pred EEEEEecccccCchHHHHHHHHHHHCCCcEEEEE---cC-CCEEEEEEeHH
Confidence 45554 44899999999999999999999998 22 22477777643
No 60
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=78.57 E-value=1.4 Score=42.40 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=31.7
Q ss_pred CCccceeEEEEEEe-CCCchhhhhhhhhccccccccee
Q 018896 309 PSGLRSHTLSMLVN-NTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 309 ~~~~~~~~ls~~V~-n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
+.+..+..|.+.+. |+||.|.++-+.|+.||.|+-.|
T Consensus 196 ~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkI 233 (313)
T 3mwb_A 196 RTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRI 233 (313)
T ss_dssp CCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEE
Confidence 34567888889995 99999999999999999997655
No 61
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=77.53 E-value=1.8 Score=43.58 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCCccceeEEEEEEeCCCchhhhhhhhhccccccccee
Q 018896 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 308 ~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
...+..+..|.+.+.|+||.|.++-+.|+.||.|+-.|
T Consensus 28 ~~tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkI 65 (429)
T 1phz_A 28 NSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHI 65 (429)
T ss_dssp CCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSE
T ss_pred CCCCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEE
Confidence 34456788899999999999999999999999998665
No 62
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=75.97 E-value=3.8 Score=32.23 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~ 214 (349)
.-|.-+.++|+.++ +.|-...+.++.+++.|++++|++|++.|+
T Consensus 18 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp SHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 45889999999765 668888889999999999999999999997
No 63
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=75.92 E-value=15 Score=37.06 Aligned_cols=115 Identities=16% Similarity=0.286 Sum_probs=70.5
Q ss_pred cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC--------hHHHHHHHHHHhcCeeeeEEEecCCchhhh
Q 018896 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT--------ERVLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (349)
Q Consensus 87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd--------d~~veQLiKQL~KLiDVikV~dlt~~~~V~ 158 (349)
-++||.+.||...|++.|+||+-++-+ ..-++++++.+ .+.++++.++|++.- .|+ ++
T Consensus 352 ~~~~g~~~~if~~la~~~I~vd~I~ss----e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~---~v~-------~~ 417 (510)
T 2cdq_A 352 LGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPSKLWSRELIQQELDHVVEELEKIA---VVN-------LL 417 (510)
T ss_dssp TTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---EEE-------EE
T ss_pred CCcccHHHHHHHHHHHcCCcEEEEEeC----CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCC---eEE-------Ee
Confidence 468999999999999999999999643 23478888743 346777888887632 222 45
Q ss_pred hheeeEEEeCCCCCHH----HHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 159 RELMLIKLNGDTSTWP----EIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 159 RELaLIKV~~~~~~R~----EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
+.+++|-|--.-.... .+++.....+-+| +.-+...+-|.+.=+.+..+..++.|..
T Consensus 418 ~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH~ 480 (510)
T 2cdq_A 418 KGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHK 480 (510)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHHH
Confidence 6788888865522222 2333333333344 4432344444444455566666666653
No 64
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=75.76 E-value=4.4 Score=32.48 Aligned_cols=45 Identities=2% Similarity=-0.044 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ |.|-...+.++.+++-|++++|++|++.|+.
T Consensus 25 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 71 (102)
T 1urr_A 25 FFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLEN 71 (102)
T ss_dssp SHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 46899999999765 6688889999999999999999999999973
No 65
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=75.70 E-value=3.8 Score=36.77 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=37.1
Q ss_pred EEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 83 SVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 83 SIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
-.-..++||+..|+...+++.|+||+-++ |. +-.|.++|+.+ ..++.++.|.
T Consensus 122 G~GM~~~~GVaak~F~aLa~~~INI~mIs---tS-Ei~IS~vV~~~--d~~~Av~aLH 173 (200)
T 4go7_X 122 GAGMRSHPGVTATFCEALAAVGVNIELIS---TS-EIRISVLCRDT--ELDKAVVALH 173 (200)
T ss_dssp EESCTTCHHHHHHHHHHHHHTTCCCCEEE---EC-SSEEEEEEEGG--GHHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHCCCCEEEEE---cc-CCEEEEEEeHH--HHHHHHHHHH
Confidence 33567899999999999999999999997 22 12477777633 2444444443
No 66
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=75.22 E-value=4.3 Score=32.65 Aligned_cols=45 Identities=2% Similarity=0.015 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ |.|-...+.++.+++.|++++|++|++.|+.
T Consensus 28 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 74 (101)
T 2bjd_A 28 GFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 74 (101)
T ss_dssp SHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 56999999999865 6688888889999999999999999999974
No 67
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=75.07 E-value=1.8 Score=42.40 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=30.8
Q ss_pred eeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
.+.|-+.=+|.||++.+|+.+|+..|.||.+..++
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~ 365 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ 365 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhcc
Confidence 45688888999999999999999999999887653
No 68
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=74.96 E-value=2.4 Score=42.09 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=30.9
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~ 346 (349)
..|-|.+.=.|.||+|.+|+.+|+..|.||+...
T Consensus 342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~ 375 (416)
T 3k5p_A 342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQF 375 (416)
T ss_dssp SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHh
Confidence 3678999999999999999999999999998764
No 69
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=74.62 E-value=1.7 Score=40.82 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.5
Q ss_pred cceeEEEEEE---eCCCchhhhhhhhhccccccccee
Q 018896 312 LRSHTLSMLV---NNTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 312 ~~~~~ls~~V---~n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
..+..|.+.+ .|+||.|.++-+.|+.||.|+-.|
T Consensus 184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkI 220 (267)
T 2qmw_A 184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWI 220 (267)
T ss_dssp SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEE
Confidence 4578899999 899999999999999999998665
No 70
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=74.47 E-value=1.7 Score=43.62 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=33.0
Q ss_pred ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348 (349)
Q Consensus 313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~ 348 (349)
..|+|-+...++||++.+|+.+++..|.||..+.++
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~ 488 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLS 488 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEe
Confidence 348999999999999999999999999999998774
No 71
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=73.38 E-value=4.7 Score=32.07 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~ 214 (349)
.-|.-+.++|+.++ |.|-...+.++.+++-|++++|++|++.|+
T Consensus 22 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 22 FFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 46899999999865 668888989999999999999999999996
No 72
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=72.92 E-value=5.4 Score=31.08 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=33.8
Q ss_pred EEEEEEEcCcccHHH----HHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 80 HTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 80 htISIlVeNkPGVL~----RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
+...|.|..|||+|. .|.+-+.+.||+++++..+ .++++.++++
T Consensus 3 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~g-----K~~~l~~~~~ 50 (85)
T 1gtd_A 3 FMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTT-----DVITFTMDED 50 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEE-----EEEEEEECCS
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCChheEEEE-----EEEEEEecCC
Confidence 456788888999985 5667779999999888765 3588877765
No 73
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=72.62 E-value=8.4 Score=30.19 Aligned_cols=67 Identities=12% Similarity=0.292 Sum_probs=49.7
Q ss_pred eEEEEEEEEcCccc-HHHHHHHHHhccCcceeeEeeeecCCCc-E--EEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896 78 KRHTISVFVGDESG-IINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 78 ~~htISIlVeNkPG-VL~RItGLFsRRGyNIeSLtVg~Ted~g-i--iTIVV~-gdd~~veQLiKQL~KLiDVikV 148 (349)
-.+.+.+...+.++ ....|..+| +|++.++. ......| + +|+.+. .+.++++.|-+.|.+...|.-|
T Consensus 14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~---~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF---KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB---SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc---cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 46899999999999 999999999 77776532 1222223 2 566554 4778899999999988887655
No 74
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=71.95 E-value=7.5 Score=30.16 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=32.9
Q ss_pred EEEEEEEcCcccHHH----HHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 80 HTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 80 htISIlVeNkPGVL~----RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
+...|.|..|||+|. .|.+-+.+.||+++++..+ .++++.+.++
T Consensus 4 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~g-----K~~~l~~~~~ 51 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVG-----KVLEIVFPAE 51 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEE-----EEEEEEEECS
T ss_pred eEEEEEEEECCCCcChHHHHHHHHHHHCCCChhhEEEE-----EEEEEEecCC
Confidence 456778888999985 5667789999998877764 3577777644
No 75
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=70.99 E-value=4.3 Score=32.27 Aligned_cols=45 Identities=20% Similarity=0.024 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 21 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 67 (98)
T 1aps_A 21 CFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSK 67 (98)
T ss_dssp CCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSSSS
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHhh
Confidence 46889999999765 6688888899999999999999999999974
No 76
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=70.52 E-value=6.4 Score=30.89 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHhc--CcEEEEecCCEEEEEEeCChhHHHHHHHHh
Q 018896 171 STWPEIMWLVDIF--RAKVVDISEHALTIEVTGDPGKMVAVQRNL 213 (349)
Q Consensus 171 ~~R~EI~~la~iF--rAkIVDvs~~sltIEvTG~~~KIdafi~~L 213 (349)
.-|.-+.++|+.+ .+.|-...+.++.+++.|++++|++|++.|
T Consensus 18 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 18 GFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp TCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 4688889999875 578999999999999999999999999999
No 77
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=69.82 E-value=6.2 Score=38.33 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=32.9
Q ss_pred EEEEE---cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 82 ISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 82 ISIlV---eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
+||.- .++||++.|+...+++.|+||+-++. + +..+.++|+.+
T Consensus 347 vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--S--e~~is~vV~~~ 392 (421)
T 3ab4_A 347 VSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST--S--EIRISVLIRED 392 (421)
T ss_dssp EEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEE--E--TTEEEEEEEGG
T ss_pred EEEEccCcccCccHHHHHHHHHHHCCCCEEEEEc--C--CCeEEEEEeHH
Confidence 55544 47999999999999999999997762 2 23577888744
No 78
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=69.37 E-value=4.4 Score=34.03 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ +.|-...+.++.|++-|+++.|++|++.|+.
T Consensus 48 GFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~ 94 (121)
T 2lxf_A 48 FFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHK 94 (121)
T ss_dssp CCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 57999999999875 6688888999999999999999999999974
No 79
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=69.11 E-value=28 Score=26.86 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=55.2
Q ss_pred EEEEEEEcCc-ccHHHHHHHHHhccCcceeeEeeee-cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEE
Q 018896 80 HTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (349)
Q Consensus 80 htISIlVeNk-PGVL~RItGLFsRRGyNIeSLtVg~-Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~ 149 (349)
-+|++..+++ .++-.|++.+.....=.|.|-.=-+ .++..+..|++.|+.+.+..+..+|..+-.|..+.
T Consensus 6 Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~Hvhld~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 77 (85)
T 1q5y_A 6 AVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGH 77 (85)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHTGGGEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEE
T ss_pred EEEEEEEeCCchhHHHHHHHHHHhccCeEEEEEeeeeCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEe
Confidence 4788888887 6777899999998777666655445 45545688999999999999999999997776665
No 80
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=68.52 E-value=11 Score=31.97 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHhccC--cceeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHHhcC
Q 018896 90 SGIINRIAGVFARRG--YNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKL 142 (349)
Q Consensus 90 PGVL~RItGLFsRRG--yNIeSLtVg~Ted-~giiTIVV~-gdd~~veQLiKQL~KL 142 (349)
.|+|+|+..+.-..| |.|..+.+|.+.+ ++...|.|. .+++.+++|+.+|..|
T Consensus 15 Sgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 15 SLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDL 71 (118)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHHHc
Confidence 589999999887655 8999999997664 456677666 4778899999998776
No 81
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=68.43 E-value=5.4 Score=39.56 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=34.8
Q ss_pred EEEEE---cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 82 ISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 82 ISIlV---eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
+||.- .++||++.|+...+++.|+||.-++.+.+ +-.+.++|+.+
T Consensus 407 vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtS--e~~Is~vV~~~ 454 (473)
T 3c1m_A 407 ISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS--EVNISFVIDEK 454 (473)
T ss_dssp EEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSC--SSEEEEEEEGG
T ss_pred EEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCC--CceEEEEEcHH
Confidence 45544 46999999999999999999988876655 33577888744
No 82
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=68.17 E-value=28 Score=29.69 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=58.3
Q ss_pred eEEEEEEEEcCc-ccHHHHHHHHHhccCcceeeEeeee-cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 78 ~~htISIlVeNk-PGVL~RItGLFsRRGyNIeSLtVg~-Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
..-+|++..+++ .++-.+++.+.....=.|.|-.=-+ .++..+.+|+|.|+.+.+..+..+|..+-.|..+..
T Consensus 64 ~~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhld~~~clEvivv~G~~~~I~~l~~kl~~lkGV~~~kl 138 (148)
T 2wvf_A 64 KIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKL 138 (148)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEECSSSEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 346888888887 7788899999988776666554444 454456889999999999999999999999988874
No 83
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=66.16 E-value=32 Score=28.51 Aligned_cols=73 Identities=14% Similarity=0.011 Sum_probs=58.0
Q ss_pred eEEEEEEEEcCc-ccHHHHHHHHHhccCcceeeEeeee-cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 78 ~~htISIlVeNk-PGVL~RItGLFsRRGyNIeSLtVg~-Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
..-+|++..+++ .++-.+++.+.....=.|.|-.=-+ .++..+.+|++.|+.+.+..+..+|.++-.|..+..
T Consensus 52 ~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 126 (133)
T 2hza_A 52 GFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 126 (133)
T ss_dssp EEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEE
T ss_pred eEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEee
Confidence 345888888888 7788899999988877766655444 454456889999999999999999999888887763
No 84
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=64.95 E-value=8.5 Score=38.29 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=35.9
Q ss_pred EEEEE---EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 81 TISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 81 tISIl---VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
.+|+. ..++||+..|+...+++.|+||.-++.|.+|. -+.++|+.+
T Consensus 376 ~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei--~Is~vV~~~ 424 (446)
T 3tvi_A 376 LVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEI--NVIVGVETV 424 (446)
T ss_dssp EEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTT--EEEEEEEGG
T ss_pred EEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCc--eEEEEEcHH
Confidence 44554 34699999999999999999999999876644 377777643
No 85
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=62.93 E-value=16 Score=28.27 Aligned_cols=54 Identities=11% Similarity=0.449 Sum_probs=38.6
Q ss_pred EEEEEEcCcccHHH----HHHHHHhccCc-ceeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHH
Q 018896 81 TISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQL 139 (349)
Q Consensus 81 tISIlVeNkPGVL~----RItGLFsRRGy-NIeSLtVg~Ted~giiTIVV~gd----d~~veQLiKQL 139 (349)
...|.|..|||+|. .|.+.+.+.|| +++++..+ .++++.++++ ++.++.+.++|
T Consensus 3 ~~~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~g-----K~~~l~~~~~~~~a~~~v~~~~~~L 65 (84)
T 1t4a_A 3 KVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIG-----KYMELTIEKSDRDLDVLVKEMCEKL 65 (84)
T ss_dssp EEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEE-----EEEEEEECCCSSCHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEE-----EEEEEEecCchHHHHHHHHHHHHHh
Confidence 35677778899985 67788999999 69988875 3577777664 24455555554
No 86
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=59.02 E-value=18 Score=28.56 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=34.8
Q ss_pred EEEEEEEEcCcccHHH----HHHHHHhccCc-ceeeEeeeecCCCcEEEEEEeCC
Q 018896 79 RHTISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 79 ~htISIlVeNkPGVL~----RItGLFsRRGy-NIeSLtVg~Ted~giiTIVV~gd 128 (349)
.+...|.|..|||+|. .|.+.+.+.|| +++++.++ .++++.++++
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~g-----K~~~l~~~~~ 54 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAG-----KYLVFRVNSS 54 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEE-----EEEEEEEECS
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEE-----EEEEEEecCC
Confidence 3667888889999985 66788899999 69988875 3577777654
No 87
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=57.30 E-value=63 Score=26.88 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=57.4
Q ss_pred eEEEEEEEEcCcc-cHHHHHHHHHhccCcceeeEeeee-cCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896 78 KRHTISVFVGDES-GIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 78 ~~htISIlVeNkP-GVL~RItGLFsRRGyNIeSLtVg~-Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d 150 (349)
..-+|++..+++. ++-.+++.+.....=.|.|-.=-+ .++..+.+|++.|+.+.+..+..+|.++-.|..+..
T Consensus 54 ~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 128 (138)
T 2bj7_A 54 VAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSLHVHMDEHNCLEVIVVKGEAKKIKMIADKLLSLKGVKHGKL 128 (138)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 3457888888776 778899999988777666554444 454456889999999999999999999988887764
No 88
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=56.55 E-value=37 Score=27.34 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=38.8
Q ss_pred EEEEEEEcCcccHHH----HHHHHHhccCcc-eeeEeeeecCCCcEEEEEEeCC-----hHHHHHHHHHH
Q 018896 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQL 139 (349)
Q Consensus 80 htISIlVeNkPGVL~----RItGLFsRRGyN-IeSLtVg~Ted~giiTIVV~gd-----d~~veQLiKQL 139 (349)
+...|.|..|||+|. .|.+-+.+.||+ ++++.+| .++.+.++++ ++.++++.++|
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~G-----K~~el~~~~~~~~~a~~~v~~mc~kL 80 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLG-----KSIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEE-----EEEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeee-----eEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 345677778999985 688899999996 8888775 2577777754 33445555554
No 89
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=55.30 E-value=9.3 Score=31.52 Aligned_cols=45 Identities=9% Similarity=0.282 Sum_probs=27.8
Q ss_pred hcCcEEEEec-CCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 018896 182 IFRAKVVDIS-EHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (349)
Q Consensus 182 iFrAkIVDvs-~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~R 231 (349)
+..+++.+.+ +--++||+..+++||++|++.|+++ ...|.+.+.+
T Consensus 62 ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~-----v~~Glvt~e~ 107 (114)
T 1o51_A 62 MHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI-----DFDGLVFTAD 107 (114)
T ss_dssp ----------CCCEEEEEEEECHHHHHHHHHHHHTC-----CCCSEEEEEE
T ss_pred EEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHH-----hCCCEEEEEE
Confidence 3456667766 4579999999999999999999874 1246666654
No 90
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=55.13 E-value=62 Score=26.00 Aligned_cols=37 Identities=30% Similarity=0.235 Sum_probs=25.8
Q ss_pred hheeeEEEeCCCC---CHHH-HHHHHHhcCcEEEEecCCEEEE
Q 018896 159 RELMLIKLNGDTS---TWPE-IMWLVDIFRAKVVDISEHALTI 197 (349)
Q Consensus 159 RELaLIKV~~~~~---~R~E-I~~la~iFrAkIVDvs~~sltI 197 (349)
||| |||++... ++.+ ..+|++.-+|.+|++-...+++
T Consensus 44 ~EL--IKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vL 84 (98)
T 1jo0_A 44 HEL--IKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVL 84 (98)
T ss_dssp HSE--EEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEE
T ss_pred CCe--EEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 565 55554433 3333 5568899999999998888876
No 91
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=54.45 E-value=37 Score=26.90 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=56.4
Q ss_pred CceEEEEEEEEc--CcccHHHHHHHHHhccCcceeeEeeeecCCCc-E-E--EEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896 76 KVKRHTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L-F--TIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (349)
Q Consensus 76 ~m~~htISIlVe--NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-i-i--TIVV~-gdd~~veQLiKQL~KLiDVikV 148 (349)
.-..|+|.|... ++.-+...+...+.+.+|.+.+|...+.. ++ . | +++.. -+++.+++|+.+|.....|..|
T Consensus 5 ~e~~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a 83 (94)
T 2lqj_A 5 GLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAV 83 (94)
T ss_dssp SEEEEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEE
T ss_pred cceEEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEE
Confidence 344577777764 56677888889999999999999977755 44 3 4 34433 4788999999999999999988
Q ss_pred E
Q 018896 149 E 149 (349)
Q Consensus 149 ~ 149 (349)
.
T Consensus 84 ~ 84 (94)
T 2lqj_A 84 H 84 (94)
T ss_dssp E
T ss_pred E
Confidence 6
No 92
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=52.79 E-value=25 Score=28.01 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhccC
Q 018896 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSKF 216 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~--------sltIEvTG~~~KIdafi~~L~~f 216 (349)
.-|.+|.+..+|+| ++.++ .-+|.++|+++.++..++++...
T Consensus 27 ~~Ik~I~~~TGa~I-~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~ 76 (107)
T 2hh2_A 27 ENVKAINQQTGAFV-EISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEK 76 (107)
T ss_dssp CHHHHHHHHSSSEE-EECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEE-EEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 36889999999995 66654 37899999999999988887753
No 93
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=51.76 E-value=8.5 Score=37.11 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=24.2
Q ss_pred eEEEEEEe--CCCchhhhhhhhhccccccccee
Q 018896 315 HTLSMLVN--NTPGVLNIVTGVISRRGYNIQVI 345 (349)
Q Consensus 315 ~~ls~~V~--n~~Gvl~rv~glf~~RgyNi~sl 345 (349)
.++-+.+. |+||.|.++-+.|+.||.|+-.|
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkI 239 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSF 239 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEE
Confidence 34444443 78999999999999999997655
No 94
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=50.38 E-value=11 Score=31.43 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.6
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd 128 (349)
..++||+..|+...++ |+||.-++.+.++. -+.++|+.+
T Consensus 98 m~~~~gv~a~~f~aL~--~Ini~~isqg~Se~--~is~vv~~~ 136 (157)
T 3mah_A 98 EWDNVGFEARIINALK--GVPVRMISYGGSNY--NVSVLVKAE 136 (157)
T ss_dssp ----CCHHHHHHHTTT--TSCCSEEEECSSSS--CEEEEEEGG
T ss_pred cccCccHHHHHHHHhC--CCCeEEEeeCCCCC--EEEEEEcHH
Confidence 4579999999999999 99999998776654 377777643
No 95
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=48.34 E-value=78 Score=32.11 Aligned_cols=118 Identities=17% Similarity=0.302 Sum_probs=79.6
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEe--CChHHHHHHHHHHhcCeeeeEEEecC
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDIS 152 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~--gdd~~veQLiKQL~KLiDVikV~dlt 152 (349)
-+++.+++.+-++||.|.+++.++. +-||..+.--.+ +. +.+.+.+. +..+.+++|++.|++-= ..+.|++
T Consensus 336 gr~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~g--~~~~~~~ 410 (514)
T 1tdj_A 336 QREALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA-DAKNACIFVGVRLSRGLEERKEILQMLNDGG--YSVVDLS 410 (514)
T ss_dssp CCEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC-CSSBCEEEEEEECSSTHHHHHHHHHHHTSSS--CEEETTS
T ss_pred CCcccccccCCCCCchHHHHHHHhC--CCceEEEEeecc-CCCeEEEEEEEEeCCcHHHHHHHHHHHHhCC--CCeEECC
Confidence 3568999999999999999999998 689988776532 22 23555554 33678999999998752 4578888
Q ss_pred Cchhh---hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcE
Q 018896 153 NEPHV---ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIK 219 (349)
Q Consensus 153 ~~~~V---~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~-fGIl 219 (349)
+.+.. .|=|+ ..|+. .+ -.+.-+.+|.--.|+-+-.|++.|.+ ++|-
T Consensus 411 ~~~~~~~h~~~~~--------g~~~~----------~~--~~e~~~~~~fpe~~gal~~fl~~~~~~~~i~ 461 (514)
T 1tdj_A 411 DDEMAKLHVRYMV--------GGRPS----------HP--LQERLYSFEFPESPGALLRFLNTLGTYWNIS 461 (514)
T ss_dssp SCHHHHHTGGGTC--------CCCCS----------SC--CCCEEEEEECCCCTTHHHHHHHHHCSCCCCC
T ss_pred CCHHHHHHHHHhh--------CCcCc----------cC--CCceEEEEeCCCCCCHHHHHHHhcCCCceEE
Confidence 86644 22221 11110 00 12344678888888888888888885 5553
No 96
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=48.26 E-value=78 Score=25.85 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=26.5
Q ss_pred hheeeEEEeCC-CCCHHH-HHHHHHhcCcEEEEecCCEEEEEE
Q 018896 159 RELMLIKLNGD-TSTWPE-IMWLVDIFRAKVVDISEHALTIEV 199 (349)
Q Consensus 159 RELaLIKV~~~-~~~R~E-I~~la~iFrAkIVDvs~~sltIEv 199 (349)
|||.=|||.-+ .+++.+ ..+|++.-+|.+|++-..++++=-
T Consensus 43 hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLYR 85 (104)
T 1rq8_A 43 RELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYR 85 (104)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEEE
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEe
Confidence 66544444322 123333 567788999999999888887743
No 97
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=48.14 E-value=18 Score=27.94 Aligned_cols=43 Identities=19% Similarity=0.437 Sum_probs=30.6
Q ss_pred EEEEEEcCcccHHH----HHHHHHhccCc-ceeeEeeeecCCCcEEEEEEeCC
Q 018896 81 TISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGT 128 (349)
Q Consensus 81 tISIlVeNkPGVL~----RItGLFsRRGy-NIeSLtVg~Ted~giiTIVV~gd 128 (349)
...|.|..|||+|. .|.+-+.+.|| +++++..+ .++++.++++
T Consensus 3 ~~~V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~g-----k~~~l~~~~~ 50 (83)
T 2yx5_A 3 KATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTY-----KMIDIIMEGE 50 (83)
T ss_dssp EEEEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCC-----EEEEEEEC-C
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEE-----EEEEEEecCC
Confidence 35677788899985 56678889999 67766543 3588877754
No 98
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=47.81 E-value=1.3e+02 Score=25.76 Aligned_cols=101 Identities=12% Similarity=0.222 Sum_probs=68.1
Q ss_pred HHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHHhcCee--e---------eEEE------ec
Q 018896 93 INRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVN--V---------IKVE------DI 151 (349)
Q Consensus 93 L~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd----d~~veQLiKQL~KLiD--V---------ikV~------dl 151 (349)
..-+.-+... ||.+..+.+.......+++|.++.+ =+..+.+-++|..+.| + ++|. -|
T Consensus 15 ~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSPGldRpL 93 (164)
T 1ib8_A 15 REVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGLERPL 93 (164)
T ss_dssp HHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECCSSSSCC
T ss_pred HHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccccCCCCCeEEEEeCCCCCCCC
Confidence 3344555667 9999999987655556789998743 4668889999999999 6 3333 12
Q ss_pred CCchhhhhhe-eeEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC
Q 018896 152 SNEPHVEREL-MLIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVTG 201 (349)
Q Consensus 152 t~~~~V~REL-aLIKV~~~--~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG 201 (349)
+...+..|=. -++||... .+.+ +.|.|++.++.++.++|++.+
T Consensus 94 ~~~~df~r~~G~~V~V~l~~~~~g~-------k~~~G~L~~~~~~~v~l~~~~ 139 (164)
T 1ib8_A 94 KTKDAVAGAVGKYIHVGLYQAIDKQ-------KVFEGTLLAFEEDELTMEYMD 139 (164)
T ss_dssp SSHHHHHHHCSEEEEEECSSCSSSC-------SEEEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHhCCcEEEEEEecccCCc-------eEEEEEEEEEeCCEEEEEEec
Confidence 2233333322 25666552 2232 469999999999999999976
No 99
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=45.19 E-value=15 Score=30.95 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=28.4
Q ss_pred hcCcEEEEec-CCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 018896 182 IFRAKVVDIS-EHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (349)
Q Consensus 182 iFrAkIVDvs-~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg 232 (349)
++.+++.+.+ +--++||+..+++||++|+..|+++ ...|.+.+.+-
T Consensus 58 ih~~~~l~ls~dlPVvIe~Vd~~eki~~~l~~l~~l-----v~~GlVt~e~V 104 (127)
T 2dcl_A 58 VHSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPM-----IKDGMITVEPT 104 (127)
T ss_dssp ----------CCCEEEEEEEEEHHHHHHHHHHHTTT-----CSSSEEEEEEC
T ss_pred EecceeeecCCCCCEEEEEEcCHHHHHHHHHHHHHH-----hCCCEEEEEEE
Confidence 4557777777 4579999999999999999999985 12566666544
No 100
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=43.68 E-value=48 Score=24.38 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCcEEEEecC-----CEEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISE-----HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~-----~sltIEvTG~~~KIdafi~~L~~ 215 (349)
..|.+|-+..+|+| ++.+ +.-++.++|+++.++...+++..
T Consensus 25 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 70 (76)
T 2p2r_A 25 AKINEIRQMSGAQI-KIANPVEGSTDRQVTITGSAASISLAQYLINV 70 (76)
T ss_dssp HHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCEE-EEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHH
Confidence 36888999999995 6655 46789999999999988877654
No 101
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=43.66 E-value=19 Score=36.42 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=37.4
Q ss_pred EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~ 140 (349)
..+.||+..|+...+++.|+||.-++-|.+|- .|.++|+.+ ..++.++.|+
T Consensus 429 m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei--~Is~vV~~~--d~~~Av~aLH 479 (510)
T 2cdq_A 429 VQHSSLILERAFHVLYTKGVNVQMISQGASKV--NISFIVNEA--EAEGCVQALH 479 (510)
T ss_dssp GGGHHHHHHHHHHHHHHHTCCCSEEEECTTCS--EEEEEEEHH--HHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCCCEEEEEecCCcc--eEEEEEeHH--HHHHHHHHHH
Confidence 34899999999999999999999998766653 477788733 2344444443
No 102
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=41.54 E-value=53 Score=24.53 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCcEEEEecC-----CEEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISE-----HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~-----~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.+|-+..+|+| ++.+ +.-++.++|+++.++...+++..
T Consensus 26 ~~Ik~I~~~sga~I-~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ 71 (82)
T 1wvn_A 26 ANINEIRQMSGAQI-KIANPVEGSSGRQVTITGSAASISLAQYLINA 71 (82)
T ss_dssp HHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCEE-EEecCCCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence 36888999999995 5655 26689999999999988887765
No 103
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=41.06 E-value=29 Score=34.31 Aligned_cols=78 Identities=21% Similarity=0.400 Sum_probs=54.3
Q ss_pred eEEEEEEEEc-----CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh-------HHHHHHHHHHhcCeee
Q 018896 78 KRHTISVFVG-----DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-------RVLRQVVEQLNKLVNV 145 (349)
Q Consensus 78 ~~htISIlVe-----NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd-------~~veQLiKQL~KLiDV 145 (349)
.+.+..|.++ ++||.+.||...|++.|+||+-++-+ + .-++++++.++ +.++++.++|+++-+
T Consensus 305 ~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss--~--~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~- 379 (449)
T 2j0w_A 305 RRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS--E--VSVALTLDTTGSTSTGDTLLTQSLLMELSALCR- 379 (449)
T ss_dssp EEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE--T--TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC-
T ss_pred eCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC--C--CeEEEEEeccccchhhHHHHHHHHHHHhccCCe-
Confidence 3444555554 56899999999999999999999843 2 34788887532 357788888876222
Q ss_pred eEEEecCCchhhhhheeeEEEeCC
Q 018896 146 IKVEDISNEPHVERELMLIKLNGD 169 (349)
Q Consensus 146 ikV~dlt~~~~V~RELaLIKV~~~ 169 (349)
|+ +++.+++|-|--.
T Consensus 380 --v~-------~~~~~a~vsvVG~ 394 (449)
T 2j0w_A 380 --VE-------VEEGLALVALIGN 394 (449)
T ss_dssp --EE-------EEEEEEEEEEEES
T ss_pred --EE-------EeCCeEEEEEECC
Confidence 22 4567888888644
No 104
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=39.61 E-value=59 Score=24.35 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~-----sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.+|-+..+|+| ++.+. .-++.++|+++.++...+++..
T Consensus 27 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 72 (82)
T 1zzk_A 27 QRIKQIRHESGASI-KIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 72 (82)
T ss_dssp HHHHHHHHHHCCEE-EECCTTSCSSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCEE-EEcCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 47899999999995 56543 4689999999999988777654
No 105
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=39.15 E-value=62 Score=23.55 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~--------sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 23 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 71 (76)
T 1dtj_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (76)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEE-EECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 36888999999996 66653 4789999999999988877654
No 106
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=38.35 E-value=61 Score=24.88 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~-----sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.+|.+..+|+ |++.++ .-++.++|+++.++...+++..
T Consensus 35 ~~Ik~I~~~tga~-I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~ 80 (92)
T 1x4n_A 35 EQISRIQQESGCK-IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 80 (92)
T ss_dssp HHHHHHHHHSCCE-EEECSCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCE-EEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHH
Confidence 3688999999998 466554 3688999999999887777654
No 107
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=37.09 E-value=58 Score=23.89 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=38.7
Q ss_pred heeeEEEeCCCCCHH--------HHHHHHHhcCcEEEEecCCE---EEEEEeCChhHHHHHHHHhcc
Q 018896 160 ELMLIKLNGDTSTWP--------EIMWLVDIFRAKVVDISEHA---LTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 160 ELaLIKV~~~~~~R~--------EI~~la~iFrAkIVDvs~~s---ltIEvTG~~~KIdafi~~L~~ 215 (349)
++.-..+..++.... -|.+|.+.++++| ++.++. =.+.++|+++.++...+.+..
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I-~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSV-RIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEE-ECCCCCSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEE-EECCCCCcccEEEEEcCHHHHHHHHHHHHH
Confidence 444555666654332 5789999999995 676554 267788999999888877654
No 108
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=36.87 E-value=28 Score=28.81 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCcEEEEecCCE-------EEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISEHA-------LTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~s-------ltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.+|.+.++|+| ++.++. -++.++|+++.++...+++..
T Consensus 105 ~~I~~i~~~tga~I-~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 105 KTVNELQNLTAAEV-VVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp HHHHHHHHHHCCEE-ECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCeE-EECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 36889999999998 676654 389999999999988777653
No 109
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=36.73 E-value=56 Score=24.89 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~-----sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.+|-+..+|+| ++.+. .-++.++|+++.++...+++..
T Consensus 34 ~~Ik~I~~~tga~I-~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~ 79 (89)
T 1j5k_A 34 QRIKQIRHESGASI-KIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 79 (89)
T ss_dssp HHHHHHHHHTCCEE-EECSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCeE-EecCCCCCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 36788999999984 66653 5789999999999887776653
No 110
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=36.44 E-value=92 Score=24.55 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=33.9
Q ss_pred HHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCe
Q 018896 92 IINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLV 143 (349)
Q Consensus 92 VL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLi 143 (349)
+|++++.-|. -.+||-.=.+....+. |.|++-+.|++..+++.++.|.+.-
T Consensus 37 iIs~l~~~~~-v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~ 89 (106)
T 3dhx_A 37 LLSETARRFN-VNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH 89 (106)
T ss_dssp HHHHHHHHSC-CEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-CCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 5655544442 2255555555554443 5689999999999999999987763
No 111
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=35.95 E-value=82 Score=23.73 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~--------sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 23 ~~Ik~I~~~tga~I-~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~ 71 (87)
T 1ec6_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (87)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCEE-EEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence 36888999999996 66653 4789999999999888777654
No 112
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=35.53 E-value=48 Score=26.57 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~-----sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.+|.+.++|+| ++.++ .-+|.++|+++.++...++++.
T Consensus 31 ~~Ik~I~~~TGakI-~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 31 EMIKKIQNDAGVRI-QFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 76 (106)
T ss_dssp HHHHHHHHHHTCEE-EECSSCSSSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcEE-EEecCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 46889999999985 45433 2478999999999988888765
No 113
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=34.64 E-value=56 Score=24.06 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCcEEEEecCCE---EEEEEeCChhHHHHHHHHhc
Q 018896 174 PEIMWLVDIFRAKVVDISEHA---LTIEVTGDPGKMVAVQRNLS 214 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~s---ltIEvTG~~~KIdafi~~L~ 214 (349)
.-|.+|-+..+|+| ++.++. -++.++|+++.+....+++.
T Consensus 25 ~~Ik~I~~~tga~I-~i~~~~~~er~v~I~G~~~~v~~A~~~I~ 67 (73)
T 2axy_A 25 ESVKKMREESGARI-NISEGNCPERIITLAGPTNAIFKAFAMII 67 (73)
T ss_dssp HHHHHHHHHHCCEE-EECSSCCSEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEE-EEecCCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 36889999999995 776664 37999999999988777654
No 114
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=34.03 E-value=1.7e+02 Score=23.79 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 018896 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 174 ~EI~~la~iFrAkIVDvs~~-----sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.+|-+.++|+| ++.++ .-++.++|+++.++...+++..
T Consensus 111 ~~I~~i~~~tg~~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 156 (164)
T 2jvz_A 111 EMIKKIQNDAGVRI-QFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 156 (164)
T ss_dssp HHHHHHHHHTCCEE-EECCCCTTSSEEEEEEESCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHCCeE-EEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHH
Confidence 36889999999996 55543 5789999999999988887753
No 115
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=32.59 E-value=9.3 Score=32.80 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-EEEEEEeCChHHHHHHHHHHh
Q 018896 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQLN 140 (349)
Q Consensus 82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-iiTIVV~gdd~~veQLiKQL~ 140 (349)
+.+.+.+.+|.|.+++.++.+.|+++-++.....++.. ++++.+.+ ..+..+++.|+
T Consensus 141 l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~~~~~~v~~~v~~--~~~~~i~~~le 198 (213)
T 1vr9_A 141 FSVLLEDKPGELRKVVDALALSNINILSVITTRSGDGKREVLIKVDA--VDEGTLIKLFE 198 (213)
T ss_dssp ------------------------------------------------------------
T ss_pred EEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecCCCEEEEEEEEcc--CCHHHHHHHHH
Confidence 44445577888888888888888888776544433321 24444442 23555666664
No 116
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=29.16 E-value=61 Score=34.57 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~ 215 (349)
.-|.-+.++|+.++ |.|-...+. +.|++-|++++|+.|++.|+.
T Consensus 24 GFR~~v~~~A~~lgL~G~V~N~~dG-Vei~~eG~~~~l~~f~~~L~~ 69 (761)
T 3vth_A 24 GFRPFVFNIAQKYNLKGIVYNNSSG-LYIEVEGEEKDIEAFIREIKE 69 (761)
T ss_dssp SHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCeEEEEECCCe-EEEEEEECHHHHHHHHHHHhc
Confidence 46899999999987 778888776 999999999999999999983
No 117
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=28.81 E-value=83 Score=24.66 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHHHHHhcCcEEEEecC-------CEEEEEEeCChhHHHHHHHHhcc
Q 018896 175 EIMWLVDIFRAKVVDISE-------HALTIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 175 EI~~la~iFrAkIVDvs~-------~sltIEvTG~~~KIdafi~~L~~ 215 (349)
-|.+|-+.++|+| ++.+ +.-+|.++|+++.++...+++..
T Consensus 36 ~Ik~I~~~tga~I-~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~ 82 (104)
T 1we8_A 36 TIRSICKASGAKI-TCDKESEGTLLLSRLIKISGTQKEVAAAKHLILE 82 (104)
T ss_dssp HHHHHHHHHCCEE-EECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEE-EEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHH
Confidence 6888999999995 6765 46789999999998887777654
No 118
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=28.54 E-value=28 Score=25.74 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=43.3
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEec-CCEEEEEEeCChhHHHHHHHHhccC
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS-EHALTIEVTGDPGKMVAVQRNLSKF 216 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iFrAkIVDvs-~~sltIEvTG~~~KIdafi~~L~~f 216 (349)
|.-+++.++-..-..|..+++.+++.|+|.. .+.+++.+.=.++++++|.+.|..+
T Consensus 7 ~~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~ 63 (76)
T 3lh2_S 7 LTEYTLQANWFDITGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADF 63 (76)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHH
T ss_pred ceeEEEEEcccCHHHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHH
Confidence 4456777777788899999999999998762 3458999998999999998888653
No 119
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=27.38 E-value=1.6e+02 Score=29.71 Aligned_cols=129 Identities=10% Similarity=0.126 Sum_probs=83.2
Q ss_pred eEEEEEEEEcCcc--cHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEE-eCChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896 78 KRHTISVFVGDES--GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV-SGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (349)
Q Consensus 78 ~~htISIlVeNkP--GVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV-~gdd~~veQLiKQL~KLiDVikV~dlt~~ 154 (349)
.+-.|.+-+-|.. .-+.....-|..-.| + -+++.-..+.+.+.. +++.+.+..+++.+.+-+||==+-|=.+.
T Consensus 90 n~p~ia~~V~D~~~e~~~~~~~~~~~~~~~--~--rvg~~~~~D~ial~~~s~dpe~~~~vVk~V~e~~dvPL~IDS~dp 165 (446)
T 4djd_C 90 HETAIAIQVSDNLSSEELKAKVEAINGLNF--D--RVGQHYTIQAIAIRHDADDPAAFKAAVASVAAATQLNLVLMADDP 165 (446)
T ss_dssp SCCEEEEEEETTSCHHHHHHHHHHHTTCCE--E--ETTEEECCCEEEEECCSSSTHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCCeEEEEEeCCCChHHHHHHHHHHHHHHH--H--HHHHhccCcEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEecCCH
Confidence 3456777777752 223222333333111 1 144444445566664 46778899999999888887655555555
Q ss_pred hhhhhheeeEE-----E-eCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcE
Q 018896 155 PHVERELMLIK-----L-NGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIK 219 (349)
Q Consensus 155 ~~V~RELaLIK-----V-~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIl 219 (349)
+..+.=|-..+ | .++.++..++..++..|++.|+=.++ +-+.+..+++.+..+||.
T Consensus 166 evleaALea~a~~~plI~sat~dn~e~m~~lAa~y~~pVi~~~~---------dl~~lkelv~~a~~~GI~ 227 (446)
T 4djd_C 166 DVLKEALAGVADRKPLLYAATGANYEAMTALAKENNCPLAVYGN---------GLEELAELVDKIVALGHK 227 (446)
T ss_dssp HHHHHHHGGGGGGCCEEEEECTTTHHHHHHHHHHTTCCEEEECS---------SHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhcCcCCeeEecchhhHHHHHHHHHHcCCcEEEEec---------cHHHHHHHHHHHHHCCCC
Confidence 44444332221 2 24556778999999999999999875 677888899999999994
No 120
>2dch_X Putative homing endonuclease; alpha/beta fold, hydrolase; 2.06A {Thermoproteus}
Probab=26.80 E-value=3.3e+02 Score=24.03 Aligned_cols=118 Identities=15% Similarity=0.231 Sum_probs=66.7
Q ss_pred EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhh
Q 018896 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (349)
Q Consensus 81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RE 160 (349)
+|+|..+|. .++.||..++.+.+++++... .....+..++.+. +. .+..+..++. +.+--+.... .-+.+..|
T Consensus 42 ~l~i~ten~-~iarri~~llk~~~i~~~~~~--~~kk~~~Y~v~v~-s~-~~~~~L~~lG-i~~g~k~~~~-~~p~v~~~ 114 (216)
T 2dch_X 42 YITILQKDR-RFIDKIVALLKSAEIKISSLF--YDKGAGVWKIKVK-DE-RLYRYLVNNG-VIPGKKAHVL-RPPSSAVD 114 (216)
T ss_dssp EEEEEESCH-HHHHHHHHHHHHHTCCEEEEE--EETTTTEEEEEEE-CH-HHHHHHHTTT-CCSCC---CC-CCCCTTSC
T ss_pred eEEEEeCCH-HHHHHHHHHHHHhCCCceeEE--EeCCCCEEEEEEC-Ch-HHHHHHHHcC-CCCccCcccc-cCcccCHH
Confidence 688888885 799999999999887776654 2333455666665 33 3666666643 2221110000 00111111
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhc--CcEEE-----EecCC--EEEEEEeC-ChhHHHHHHHHhccCCcE
Q 018896 161 LMLIKLNGDTSTWPEIMWLVDIF--RAKVV-----DISEH--ALTIEVTG-DPGKMVAVQRNLSKFGIK 219 (349)
Q Consensus 161 LaLIKV~~~~~~R~EI~~la~iF--rAkIV-----Dvs~~--sltIEvTG-~~~KIdafi~~L~~fGIl 219 (349)
. . .-|.-.| +|.|. |-.++ ++.+|++. +.+-.+.+.++|..|||-
T Consensus 115 ~-----------~---aFLRG~F~adGsV~~~~~~~~~~~Yh~~~lei~t~s~e~a~~l~~lL~~fGI~ 169 (216)
T 2dch_X 115 P-----------L---WYIIGFIDGDGWVEQVVKRAGDKSYYYIRIGIKTKSKELRDWIAQTLNDLGIR 169 (216)
T ss_dssp H-----------H---HHHHHHHHHHCEEEEEEEEETTEEEEEEEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred H-----------H---HHHHHHhcCCCCEeeccccCCCCccceeeEEEEECCHHHHHHHHHHHHHCCCc
Confidence 1 1 2233333 35552 11222 34489877 777778889999999975
No 121
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=25.82 E-value=1.6e+02 Score=22.63 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=33.3
Q ss_pred cHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCe
Q 018896 91 GIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLV 143 (349)
Q Consensus 91 GVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLi 143 (349)
-++++++.-|. -.+||-.=.+....+. |.|++.+.|++..+++.++.|.+.-
T Consensus 38 pvis~l~~~~~-v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~ 91 (101)
T 2qrr_A 38 PLMSQISRKYN-IDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENN 91 (101)
T ss_dssp CHHHHHHHHSC-CEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhC-CCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 35555544442 3355555555454333 5689989999888999999987653
No 122
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=25.76 E-value=92 Score=27.82 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=48.5
Q ss_pred EEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEEeCCCCCHHHHHHHHHhc----------CcEE-EEe
Q 018896 122 TIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIF----------RAKV-VDI 190 (349)
Q Consensus 122 TIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV~~~~~~R~EI~~la~iF----------rAkI-VDv 190 (349)
+|++.|....++++.+-+.+| |+- .. ++.-+|.++.. .-.++..+.+.. +++| .|-
T Consensus 150 ~Liv~g~~~~i~~i~~li~~l-D~p------~~----~~~~vi~l~~a--~A~dl~~~L~~~~~~~~~~~~~~~~v~ad~ 216 (246)
T 4e9j_A 150 ALIISDRSANIARIEDVIRQL-DQK------GS----HDYSVINLRYG--WVMDAAEVLNNAMSRGQAKGAAGAQVIADA 216 (246)
T ss_dssp EEEEEECHHHHHHHHHHHHHH-HTC------SC----CCEEEEECSSS--CHHHHHHHHHHHHHHTCSTTCTTCEEEEEG
T ss_pred EEEEEcCHHHHHHHHHHHHHh-ccc------cc----cceEEEEecCC--CHHHHHHHHHHHhccCCCCCCCceEEEEeC
Confidence 456777776665554433332 211 00 35667776543 334455444321 3455 566
Q ss_pred cCCEEEEEEeCChhHHHHHHHHhccCCc
Q 018896 191 SEHALTIEVTGDPGKMVAVQRNLSKFGI 218 (349)
Q Consensus 191 s~~sltIEvTG~~~KIdafi~~L~~fGI 218 (349)
..++++| +|+++.++.+.++++.+.+
T Consensus 217 rtNsliv--~~~~~~~~~i~~lI~~LD~ 242 (246)
T 4e9j_A 217 RTNRLII--LGPPQARAKLVQLAQSLDT 242 (246)
T ss_dssp GGTEEEE--ESSHHHHHHHHHHHHHHTC
T ss_pred CCCeEEE--ECCHHHHHHHHHHHHHhCC
Confidence 7788885 7999999999888877653
No 123
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=25.65 E-value=2.5e+02 Score=22.15 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=48.5
Q ss_pred EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeee-cCCCcEEEEEEeC-ChHHHHHHHHHHhcCeeeeEEEe
Q 018896 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVED 150 (349)
Q Consensus 79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~-Ted~giiTIVV~g-dd~~veQLiKQL~KLiDVikV~d 150 (349)
.|.=++++.=+||-+..|..-+..---- + +.. ..+.|.+-+++.+ +.+.+...++++++|..|+.+.-
T Consensus 5 ~~IsslvV~~~p~~~~~V~~~L~~ipgv-E---i~~~~~~~GkiVV~iEa~~~~~l~~~i~~I~~i~GVlst~l 74 (95)
T 2jsx_A 5 WQVCSLVVQAKSERISDISTQLNAFPGC-E---VAVSDAPSGQLIVVVEAEDSETLIQTIESVRNVEGVLAVSL 74 (95)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHTTSTTE-E---EEEEETTTTEEEEEEEESSHHHHHHHHHHHTTSTTEEEEEE
T ss_pred eEEEEEEEEECCCCHHHHHHHHHCCCCe-E---EEEecCCCCCEEEEEEeCCHHHHHHHHHHHhcCCCccEEeE
Confidence 4677889999999999999888765322 2 322 3345666666653 44556667799999999999873
No 124
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.58 E-value=2e+02 Score=21.56 Aligned_cols=29 Identities=10% Similarity=0.349 Sum_probs=25.0
Q ss_pred EEEEcCcccHHHHHHHHHhccC-cceeeEe
Q 018896 83 SVFVGDESGIINRIAGVFARRG-YNIESLA 111 (349)
Q Consensus 83 SIlVeNkPGVL~RItGLFsRRG-yNIeSLt 111 (349)
-+++++.+.....+..++.+.| |.+....
T Consensus 23 ilivdd~~~~~~~l~~~L~~~g~~~v~~~~ 52 (146)
T 4dad_A 23 ILVASEDASRLAHLARLVGDAGRYRVTRTV 52 (146)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHhhCCCeEEEEeC
Confidence 3578999999999999999999 9888654
No 125
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=24.58 E-value=1.5e+02 Score=22.77 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=36.0
Q ss_pred cHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCe
Q 018896 91 GIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLV 143 (349)
Q Consensus 91 GVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLi 143 (349)
-++++++.-|. -.+||-.=.+....+. |.|++.+.|++..+++.+..|.+.-
T Consensus 38 pvis~l~~~~~-v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~ 91 (100)
T 2qsw_A 38 PIISHIVQEYQ-VEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLR 91 (100)
T ss_dssp CHHHHHHHHHT-CEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhC-CCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcC
Confidence 45666655552 3466666555554443 6689989999888999999997654
No 126
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=23.85 E-value=1.5e+02 Score=21.27 Aligned_cols=32 Identities=9% Similarity=0.345 Sum_probs=24.0
Q ss_pred ceEEEEEEEEcCcccHHHHHHHHHhccCcceee
Q 018896 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIES 109 (349)
Q Consensus 77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeS 109 (349)
||... -+++++.+.....+..++.+.||++..
T Consensus 3 mm~~~-ilivdd~~~~~~~l~~~L~~~g~~v~~ 34 (127)
T 2gkg_A 3 HMSKK-ILIVESDTALSATLRSALEGRGFTVDE 34 (127)
T ss_dssp ---CE-EEEECSCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCe-EEEEeCCHHHHHHHHHHHHhcCceEEE
Confidence 44423 356899999999999999999998863
No 127
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=23.42 E-value=2.8e+02 Score=23.90 Aligned_cols=86 Identities=21% Similarity=0.356 Sum_probs=51.6
Q ss_pred cEEEEEEeCCh-----HHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEEeCCCC-CH----HHHHHHHHhcCcEEE
Q 018896 119 ALFTIVVSGTE-----RVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTS-TW----PEIMWLVDIFRAKVV 188 (349)
Q Consensus 119 giiTIVV~gdd-----~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV~~~~~-~R----~EI~~la~iFrAkIV 188 (349)
|.|.|+..||| +.+..+++|-.|.-..+.-..-.+. ..|.|.--|+ .| .|...++..|+..|-
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~-------l~i~itgvpeqvrkelakeaerl~~efni~v~ 74 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNR-------LVIVITGVPEQVRKELAKEAERLKAEFNINVQ 74 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTE-------EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCE-------EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEE
Confidence 56888888874 5566777888888766544321111 2233332232 22 366788889998763
Q ss_pred ----EecCCEEEEEEeCChhHHHHHHHHh
Q 018896 189 ----DISEHALTIEVTGDPGKMVAVQRNL 213 (349)
Q Consensus 189 ----Dvs~~sltIEvTG~~~KIdafi~~L 213 (349)
..+..-+.|-.-||. +++|-+.|
T Consensus 75 y~imgsgsgvm~i~f~gdd--lea~ekal 101 (170)
T 4hhu_A 75 YQIMGSGSGVMVIVFEGDD--LEALEKAL 101 (170)
T ss_dssp EEEECTTCCEEEEEEECSC--HHHHHHHH
T ss_pred EEEEeCCceEEEEEEecCc--HHHHHHHH
Confidence 346677778888874 44444433
No 128
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=21.89 E-value=65 Score=24.82 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896 117 DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (349)
Q Consensus 117 d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl 151 (349)
..|.+.|.+.|+++.++++++.|.+-..-.+|+.+
T Consensus 38 ~dG~Vei~~eG~~~~i~~f~~~l~~gP~~a~V~~v 72 (88)
T 1ulr_A 38 PDGRVEVVAEGPKEALELFLHHLKQGPRLARVEAV 72 (88)
T ss_dssp TTSCEEEEEESCHHHHHHHHHHHHHCSTTCEEEEE
T ss_pred CCCcEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 44679999999999999999998765443444433
No 129
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.65 E-value=1.1e+02 Score=23.88 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=37.1
Q ss_pred eEEEeCCCCCHH--------HHHHHHHhcCcEEEEecCCEE----EEEEeCChhHHHHHHHHhcc
Q 018896 163 LIKLNGDTSTWP--------EIMWLVDIFRAKVVDISEHAL----TIEVTGDPGKMVAVQRNLSK 215 (349)
Q Consensus 163 LIKV~~~~~~R~--------EI~~la~iFrAkIVDvs~~sl----tIEvTG~~~KIdafi~~L~~ 215 (349)
-..+.+++.... -|.+|.+.|+++| ++.++.- +|.++|.++.++...+.+..
T Consensus 18 t~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I-~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~ 81 (95)
T 2ctm_A 18 SEDVPLDHRVHARIIGARGKAIRKIMDEFKVDI-RFPQSGAPDPNCVTVTGLPENVEEAIDHILN 81 (95)
T ss_dssp CEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEE-ECCCTTCSCTTEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEECHHHccccCCCCcchHHHHHHHHCCeE-EecCCCCCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 345566665443 5778999999996 5655432 67889999999888777654
No 130
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=21.40 E-value=2.1e+02 Score=20.86 Aligned_cols=99 Identities=10% Similarity=0.082 Sum_probs=51.5
Q ss_pred EEEEcCcccHHHHHHHHHhccCcceeeEeeee-------cCCCcEEEEEEeCChHHHHHHHHHHhc-----CeeeeEEEe
Q 018896 83 SVFVGDESGIINRIAGVFARRGYNIESLAVGL-------NVDKALFTIVVSGTERVLRQVVEQLNK-----LVNVIKVED 150 (349)
Q Consensus 83 SIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~-------Ted~giiTIVV~gdd~~veQLiKQL~K-----LiDVikV~d 150 (349)
-+++++.+.....+..++.+.||++....-+. ...++++-+-..-.+..--+++++|.+ -+.|+-+..
T Consensus 6 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 6 ALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEEC
Confidence 36789999999999999999999876543221 122333322222122222334444444 356666665
Q ss_pred cCCchhhhhhee--eEEEeCCCCCHHHHHHHHHh
Q 018896 151 ISNEPHVERELM--LIKLNGDTSTWPEIMWLVDI 182 (349)
Q Consensus 151 lt~~~~V~RELa--LIKV~~~~~~R~EI~~la~i 182 (349)
..+... .+.+. -.-+=..|-...++.+.++.
T Consensus 86 ~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~ 118 (127)
T 3i42_A 86 FAKNDL-GKEACELFDFYLEKPIDIASLEPILQS 118 (127)
T ss_dssp C-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHH
T ss_pred CcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHH
Confidence 555433 22111 11122335566666655543
No 131
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.22 E-value=1.9e+02 Score=21.43 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=25.1
Q ss_pred EEEEcCcccHHHHHHHHHhccCcceeeEe
Q 018896 83 SVFVGDESGIINRIAGVFARRGYNIESLA 111 (349)
Q Consensus 83 SIlVeNkPGVL~RItGLFsRRGyNIeSLt 111 (349)
-+++++.+.....+..++.+.||++....
T Consensus 10 ilivdd~~~~~~~l~~~L~~~g~~v~~~~ 38 (136)
T 3hdv_A 10 VLVVDDNAVNREALILYLKSRGIDAVGAD 38 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEECCCHHHHHHHHHHHHHcCceEEEeC
Confidence 46789999999999999999999987643
No 132
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.64 E-value=1.8e+02 Score=22.21 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=24.3
Q ss_pred EEEEcCcccHHHHHHHHHhccCcceeeE
Q 018896 83 SVFVGDESGIINRIAGVFARRGYNIESL 110 (349)
Q Consensus 83 SIlVeNkPGVL~RItGLFsRRGyNIeSL 110 (349)
-+++++.+-....+..+|.+.||++...
T Consensus 17 ILivdd~~~~~~~l~~~L~~~g~~v~~~ 44 (153)
T 3hv2_A 17 ILLVDSQEVILQRLQQLLSPLPYTLHFA 44 (153)
T ss_dssp EEEECSCHHHHHHHHHHHTTSSCEEEEE
T ss_pred EEEECCCHHHHHHHHHHhcccCcEEEEE
Confidence 4678999999999999999999988743
No 133
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.28 E-value=89 Score=24.87 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=33.8
Q ss_pred HHHHHHHhcCcEEEEecCCEEEEEEeC-ChhHHHHHHHHhccC
Q 018896 175 EIMWLVDIFRAKVVDISEHALTIEVTG-DPGKMVAVQRNLSKF 216 (349)
Q Consensus 175 EI~~la~iFrAkIVDvs~~sltIEvTG-~~~KIdafi~~L~~f 216 (349)
-|.+|.+.++++=||+.++.=++.++| +.+.+++..+.++..
T Consensus 36 ~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 36 NIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp HHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhh
Confidence 688999999998678876556677788 899999888888754
No 134
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.21 E-value=2.6e+02 Score=20.35 Aligned_cols=28 Identities=11% Similarity=0.324 Sum_probs=24.2
Q ss_pred EEEEcCcccHHHHHHHHHhccCcceeeE
Q 018896 83 SVFVGDESGIINRIAGVFARRGYNIESL 110 (349)
Q Consensus 83 SIlVeNkPGVL~RItGLFsRRGyNIeSL 110 (349)
-+++++.+.....+..++.+.||++...
T Consensus 8 ilivdd~~~~~~~l~~~L~~~g~~v~~~ 35 (132)
T 2rdm_A 8 ILLADDEAILLLDFESTLTDAGFLVTAV 35 (132)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHcCCEEEEE
Confidence 3578999999999999999999988753
Done!