Query 018897
Match_columns 349
No_of_seqs 185 out of 1238
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.5E-15 5E-20 120.5 6.0 63 179-241 6-69 (82)
2 4ati_A MITF, microphthalmia-as 99.5 3.9E-14 1.4E-18 119.5 7.4 59 179-237 27-89 (118)
3 1an4_A Protein (upstream stimu 99.5 1.7E-14 5.9E-19 109.2 4.3 54 178-231 4-63 (65)
4 1hlo_A Protein (transcription 99.5 3.1E-14 1.1E-18 112.1 5.5 63 179-241 12-76 (80)
5 1a0a_A BHLH, protein (phosphat 99.5 8.9E-15 3E-19 110.8 1.9 54 179-232 2-62 (63)
6 1nkp_B MAX protein, MYC proto- 99.5 5E-14 1.7E-18 111.5 6.1 62 180-241 3-66 (83)
7 4h10_B Circadian locomoter out 99.5 2.5E-14 8.6E-19 110.8 3.4 57 179-235 8-65 (71)
8 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.5E-13 5E-18 110.5 6.0 61 180-240 7-70 (88)
9 4h10_A ARYL hydrocarbon recept 99.4 6.8E-14 2.3E-18 108.9 0.6 51 179-229 9-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.4 1.2E-12 4E-17 103.5 7.2 62 180-241 2-66 (80)
11 3u5v_A Protein MAX, transcript 99.3 1.4E-12 4.7E-17 102.3 3.6 58 179-236 5-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.0 7.8E-11 2.7E-15 90.5 1.8 53 179-231 12-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 2.7E-10 9.1E-15 85.4 4.2 53 180-232 3-58 (60)
14 4f3l_A Mclock, circadian locom 98.9 1.2E-09 4E-14 105.9 5.2 52 179-230 12-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 4.7E-09 1.6E-13 102.9 3.1 52 179-230 13-68 (387)
16 2lfh_A DNA-binding protein inh 98.4 3.6E-08 1.2E-12 75.5 1.2 46 184-229 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.3 7E-07 2.4E-11 70.9 6.3 48 191-238 4-55 (83)
18 4aya_A DNA-binding protein inh 97.9 1.9E-05 6.5E-10 64.4 5.9 48 186-233 32-82 (97)
19 1zpv_A ACT domain protein; str 96.7 0.019 6.6E-07 43.9 10.8 66 274-342 5-70 (91)
20 1u8s_A Glycine cleavage system 96.0 0.025 8.5E-07 49.6 8.7 65 274-342 6-70 (192)
21 2nyi_A Unknown protein; protei 95.3 0.045 1.5E-06 48.5 7.9 68 274-342 5-73 (195)
22 2ko1_A CTR148A, GTP pyrophosph 94.9 0.18 6.2E-06 37.8 9.1 39 274-312 5-43 (88)
23 2nyi_A Unknown protein; protei 94.7 0.097 3.3E-06 46.3 8.1 65 273-342 92-163 (195)
24 1u8s_A Glycine cleavage system 93.9 0.31 1.1E-05 42.5 9.6 66 273-342 92-166 (192)
25 3p96_A Phosphoserine phosphata 91.3 0.44 1.5E-05 46.1 7.6 67 274-342 12-78 (415)
26 3o1l_A Formyltetrahydrofolate 89.8 1.7 5.9E-05 41.5 10.1 66 274-342 22-90 (302)
27 2jhe_A Transcription regulator 89.3 0.59 2E-05 38.9 5.8 36 276-311 2-37 (190)
28 3n0v_A Formyltetrahydrofolate 88.8 2 6.9E-05 40.6 9.7 65 274-342 8-75 (286)
29 3obi_A Formyltetrahydrofolate 87.5 2.3 8E-05 40.2 9.2 66 274-342 6-74 (288)
30 3lou_A Formyltetrahydrofolate 87.2 2.2 7.5E-05 40.5 8.9 68 274-342 10-80 (292)
31 3nrb_A Formyltetrahydrofolate 80.2 5.5 0.00019 37.6 8.3 64 274-342 7-73 (287)
32 2f1f_A Acetolactate synthase i 77.7 2.7 9.3E-05 36.7 5.0 63 276-342 5-69 (164)
33 1y7p_A Hypothetical protein AF 77.2 4.7 0.00016 37.1 6.6 62 274-340 4-69 (223)
34 2pc6_A Probable acetolactate s 71.5 3.4 0.00011 36.2 4.0 63 276-342 6-70 (165)
35 2f06_A Conserved hypothetical 71.0 26 0.00087 28.5 9.2 59 277-344 75-133 (144)
36 2fgc_A Acetolactate synthase, 69.5 6.5 0.00022 35.3 5.5 63 275-341 30-94 (193)
37 2f06_A Conserved hypothetical 62.3 48 0.0016 26.8 9.2 37 276-312 8-44 (144)
38 2wt7_A Proto-oncogene protein 41.9 53 0.0018 23.8 5.5 17 187-203 1-17 (63)
39 2dtj_A Aspartokinase; protein- 35.6 1.2E+02 0.0042 25.7 7.7 37 268-304 89-128 (178)
40 3he4_B Synzip5; heterodimeric 34.3 51 0.0017 22.4 3.8 22 217-238 5-26 (46)
41 2re1_A Aspartokinase, alpha an 33.7 2.1E+02 0.007 23.8 9.2 35 271-305 100-137 (167)
42 2er8_A Regulatory protein Leu3 32.9 33 0.0011 24.7 3.1 20 222-241 49-68 (72)
43 2nyg_A YOKD protein; PFAM02522 32.2 39 0.0013 31.6 4.2 53 285-347 12-65 (273)
44 2l5g_A GPS2 protein, G protein 31.8 59 0.002 21.8 3.8 29 211-239 4-32 (38)
45 2dt9_A Aspartokinase; protein- 29.7 2.3E+02 0.0078 23.5 8.4 34 272-305 93-129 (167)
46 3ijw_A Aminoglycoside N3-acety 28.4 46 0.0016 31.2 3.9 54 284-347 13-67 (268)
47 3sma_A FRBF; N-acetyl transfer 28.1 38 0.0013 32.0 3.4 51 287-347 23-74 (286)
48 1g70_B RSG-1.2 peptide; peptid 28.1 33 0.0011 20.8 1.9 9 185-193 11-19 (26)
49 2re1_A Aspartokinase, alpha an 26.9 59 0.002 27.3 4.1 41 268-308 19-60 (167)
50 2dtj_A Aspartokinase; protein- 26.8 1.5E+02 0.0052 25.1 6.8 40 269-308 10-50 (178)
51 1zme_C Proline utilization tra 26.7 50 0.0017 23.4 3.2 19 222-240 44-62 (70)
52 3s1t_A Aspartokinase; ACT doma 26.4 2.4E+02 0.0083 24.0 8.1 35 272-306 94-131 (181)
53 2jee_A YIIU; FTSZ, septum, coi 26.3 68 0.0023 25.0 3.9 24 217-240 15-38 (81)
54 3fx7_A Putative uncharacterize 24.5 1.5E+02 0.005 23.6 5.7 22 217-238 65-86 (94)
55 2qmw_A PDT, prephenate dehydra 22.2 3.2E+02 0.011 25.2 8.5 64 273-343 185-255 (267)
56 4go7_X Aspartokinase; transfer 21.8 1.1E+02 0.0036 27.2 4.9 35 271-305 32-67 (200)
57 1gd2_E Transcription factor PA 21.8 70 0.0024 24.0 3.2 17 222-238 29-45 (70)
58 2qmx_A Prephenate dehydratase; 21.2 2.4E+02 0.0083 26.2 7.5 66 276-344 202-268 (283)
59 1xkm_B Distinctin chain B; por 21.0 94 0.0032 18.8 2.9 19 215-233 4-22 (26)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.58 E-value=1.5e-15 Score=120.50 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=58.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI-SKMDRTSILADTIDYMKELLDKISSLQQEIQAG 241 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP~~-~K~dKaSIL~~AI~YIk~Lq~~v~~L~~~~e~~ 241 (349)
++..|+++||+||.+||++|..|+++||+. .|++|++||.+||+||++|+.+++.|+++.+..
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999986 899999999999999999999999999977654
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.49 E-value=3.9e-14 Score=119.50 Aligned_cols=59 Identities=27% Similarity=0.534 Sum_probs=52.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCCCC----CCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI----SKMDRTSILADTIDYMKELLDKISSLQQE 237 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP~~----~K~dKaSIL~~AI~YIk~Lq~~v~~L~~~ 237 (349)
.+..|+++||+||.+||++|..|++|||++ .|++|++||.+||+||++||++++.|+++
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999975 37889999999999999999999999874
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=1.7e-14 Score=109.18 Aligned_cols=54 Identities=30% Similarity=0.497 Sum_probs=49.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhHhcCCCCC------CCCchhhHHHHHHHHHHHHHHH
Q 018897 178 GQPSKNLMAERRRRKRLNDRLSMLRSIVPKIS------KMDRTSILADTIDYMKELLDKI 231 (349)
Q Consensus 178 ~~~~~h~~aER~RR~kin~~~~~LrslvP~~~------K~dKaSIL~~AI~YIk~Lq~~v 231 (349)
..+..|+.+||+||.+||+.|..|++|||... |++|++||.+||+||+.|+++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999754 7899999999999999999764
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=3.1e-14 Score=112.12 Aligned_cols=63 Identities=29% Similarity=0.461 Sum_probs=58.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCCCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI--SKMDRTSILADTIDYMKELLDKISSLQQEIQAG 241 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP~~--~K~dKaSIL~~AI~YIk~Lq~~v~~L~~~~e~~ 241 (349)
.+..|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||+.|+++++.|+.+++.+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999974 699999999999999999999999999987643
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.47 E-value=8.9e-15 Score=110.82 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=48.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCCCC-------CCCCchhhHHHHHHHHHHHHHHHH
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI-------SKMDRTSILADTIDYMKELLDKIS 232 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP~~-------~K~dKaSIL~~AI~YIk~Lq~~v~ 232 (349)
++.+|+++||+||.+||..|..|++|||+. ++.+||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999999953 577899999999999999998753
No 6
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.46 E-value=5e-14 Score=111.47 Aligned_cols=62 Identities=29% Similarity=0.422 Sum_probs=57.1
Q ss_pred CccchHHHHHHHHHHHHHHHHhHhcCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018897 180 PSKNLMAERRRRKRLNDRLSMLRSIVPK--ISKMDRTSILADTIDYMKELLDKISSLQQEIQAG 241 (349)
Q Consensus 180 ~~~h~~aER~RR~kin~~~~~LrslvP~--~~K~dKaSIL~~AI~YIk~Lq~~v~~L~~~~e~~ 241 (349)
+..|+.+||+||.+||+.|..|+++||. ..|++|++||..||+||+.|+++++.|+.+++..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999997 4799999999999999999999999998877554
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=2.5e-14 Score=110.83 Aligned_cols=57 Identities=25% Similarity=0.472 Sum_probs=52.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCCC-CCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVPK-ISKMDRTSILADTIDYMKELLDKISSLQ 235 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP~-~~K~dKaSIL~~AI~YIk~Lq~~v~~L~ 235 (349)
.+.+|+++||+||.+||++|..|++|||. ..|+||++||..||+||+.||+++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45799999999999999999999999996 4699999999999999999999887654
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1.5e-13 Score=110.48 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=55.6
Q ss_pred CccchHHHHHHHHHHHHHHHHhHhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018897 180 PSKNLMAERRRRKRLNDRLSMLRSIVPKI---SKMDRTSILADTIDYMKELLDKISSLQQEIQA 240 (349)
Q Consensus 180 ~~~h~~aER~RR~kin~~~~~LrslvP~~---~K~dKaSIL~~AI~YIk~Lq~~v~~L~~~~e~ 240 (349)
+..|+.+||+||.+||+.|..|+.+||.. .|++|++||.+||+||++|+.+.+.|..+++.
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999974 59999999999999999999999988776543
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.36 E-value=6.8e-14 Score=108.92 Aligned_cols=51 Identities=29% Similarity=0.470 Sum_probs=47.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCCCC----CCCCchhhHHHHHHHHHHHHH
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI----SKMDRTSILADTIDYMKELLD 229 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP~~----~K~dKaSIL~~AI~YIk~Lq~ 229 (349)
++..|+.+||+||++||+.|..|++|||.+ .|+||++||..||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999964 799999999999999999973
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.35 E-value=1.2e-12 Score=103.55 Aligned_cols=62 Identities=26% Similarity=0.240 Sum_probs=56.4
Q ss_pred CccchHHHHHHHHHHHHHHHHhHhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018897 180 PSKNLMAERRRRKRLNDRLSMLRSIVPKI---SKMDRTSILADTIDYMKELLDKISSLQQEIQAG 241 (349)
Q Consensus 180 ~~~h~~aER~RR~kin~~~~~LrslvP~~---~K~dKaSIL~~AI~YIk~Lq~~v~~L~~~~e~~ 241 (349)
+..|+..||+||..||+.|..|+++||.. .|.+|++||..|++||+.|+++.+.|..+++..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999964 688899999999999999999999999877543
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.28 E-value=1.4e-12 Score=102.26 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=48.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCCC---CCCC-CchhhHHHHHHHHHHHHHHHHHHHH
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVPK---ISKM-DRTSILADTIDYMKELLDKISSLQQ 236 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP~---~~K~-dKaSIL~~AI~YIk~Lq~~v~~L~~ 236 (349)
+|..|+..||+||..||+.|..|+.+||. ..|. +|.+||..||+||+.|++++++++.
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56799999999999999999999999994 3455 6889999999999999999987653
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.00 E-value=7.8e-11 Score=90.46 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=48.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCCC--CCCCCchhhHHHHHHHHHHHHHHH
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVPK--ISKMDRTSILADTIDYMKELLDKI 231 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP~--~~K~dKaSIL~~AI~YIk~Lq~~v 231 (349)
++..|+..||+|+..||+.|..||.+||. ..|++|..||..||+||+.|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999996 468999999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.99 E-value=2.7e-10 Score=85.44 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=48.3
Q ss_pred CccchHHHHHHHHHHHHHHHHhHhcCCCC---CCCCchhhHHHHHHHHHHHHHHHH
Q 018897 180 PSKNLMAERRRRKRLNDRLSMLRSIVPKI---SKMDRTSILADTIDYMKELLDKIS 232 (349)
Q Consensus 180 ~~~h~~aER~RR~kin~~~~~LrslvP~~---~K~dKaSIL~~AI~YIk~Lq~~v~ 232 (349)
+..|+..||+|+..||+.|..||.+||.. .|++|..+|..||+||+.|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999964 589999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.87 E-value=1.2e-09 Score=105.95 Aligned_cols=52 Identities=25% Similarity=0.524 Sum_probs=42.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCC-CCCCCCchhhHHHHHHHHHHHHHH
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVP-KISKMDRTSILADTIDYMKELLDK 230 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP-~~~K~dKaSIL~~AI~YIk~Lq~~ 230 (349)
.+.+|+.+||+||++||..|..|++||| ...|+||++||..||+|||.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999 567999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.70 E-value=4.7e-09 Score=102.92 Aligned_cols=52 Identities=29% Similarity=0.445 Sum_probs=48.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHhHhcCC----CCCCCCchhhHHHHHHHHHHHHHH
Q 018897 179 QPSKNLMAERRRRKRLNDRLSMLRSIVP----KISKMDRTSILADTIDYMKELLDK 230 (349)
Q Consensus 179 ~~~~h~~aER~RR~kin~~~~~LrslvP----~~~K~dKaSIL~~AI~YIk~Lq~~ 230 (349)
++.+|+.+||+||++||..|..|++||| ...|+||++||..||+|||.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 4679999999999999999999999999 578999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.45 E-value=3.6e-08 Score=75.51 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHhHhcCCCC---CCCCchhhHHHHHHHHHHHHH
Q 018897 184 LMAERRRRKRLNDRLSMLRSIVPKI---SKMDRTSILADTIDYMKELLD 229 (349)
Q Consensus 184 ~~aER~RR~kin~~~~~LrslvP~~---~K~dKaSIL~~AI~YIk~Lq~ 229 (349)
+..||+|+..||+.|..||.+||.. .|++|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3568899999999999999999964 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.34 E-value=7e-07 Score=70.86 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhHhcCCCC----CCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 018897 191 RKRLNDRLSMLRSIVPKI----SKMDRTSILADTIDYMKELLDKISSLQQEI 238 (349)
Q Consensus 191 R~kin~~~~~LrslvP~~----~K~dKaSIL~~AI~YIk~Lq~~v~~L~~~~ 238 (349)
|..||+++..|..|||.. .|.+|++||..|++||+.||++++.+.++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999964 578999999999999999999988887643
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.86 E-value=1.9e-05 Score=64.36 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhHhcCCC---CCCCCchhhHHHHHHHHHHHHHHHHH
Q 018897 186 AERRRRKRLNDRLSMLRSIVPK---ISKMDRTSILADTIDYMKELLDKISS 233 (349)
Q Consensus 186 aER~RR~kin~~~~~LrslvP~---~~K~dKaSIL~~AI~YIk~Lq~~v~~ 233 (349)
.||.|=..+|+.|..||.+||. ..|++|..+|.-||+||+.|++-++.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3567778999999999999996 36899999999999999999987653
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.70 E-value=0.019 Score=43.93 Aligned_cols=66 Identities=11% Similarity=0.210 Sum_probs=51.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFNDFAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.+.|.|.|.++||+|.+|..+|-+.|..|.+.+.....+...-.+..+.. .....+.|.++|.+..
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~---~~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD---EKQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES---SCCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC---CCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999888877633333333332 2457789999998765
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.99 E-value=0.025 Score=49.59 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=50.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFNDFAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.+.|.|.|+++||++..|..+|.+.|++|+.+.+.+..+..+..+.+... . ...+.|+++|...+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--~--~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--P--SNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--H--HHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--C--CCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999887743334444332 1 25678888888765
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.34 E-value=0.045 Score=48.50 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=48.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFND-FAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d-~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.+.|.|.|++++|++..|..+|.++|+.|+.+.+.+..+ |.+ .+.............+.|+++|...+
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~~~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAKDGKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSSSSHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCccchhHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999998776 444 33333211100001566777765443
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.92 E-value=0.18 Score=37.75 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=35.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCC
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFND 312 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d 312 (349)
.+.|.|.+.++||+|.+|..+|.+.|+.|.+..+...++
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 457888999999999999999999999999998887666
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.67 E-value=0.097 Score=46.31 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=49.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeC------C-eEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 273 MDTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFN------D-FAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 273 ~~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~------d-~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
....|.|.|+++||++..|-..|-++|+.|..+.+.+.+ + |.+.... ... .... ++|+++|...+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~-~~~---~~~~-~~l~~~l~~~a 163 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRV-AFP---FPLY-QEVVTALSRVE 163 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEE-EEE---GGGH-HHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEE-EcC---CCcc-HHHHHHHHHHH
Confidence 456899999999999999999999999999999999886 2 3333222 211 1335 88999998765
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.86 E-value=0.31 Score=42.45 Aligned_cols=66 Identities=9% Similarity=0.061 Sum_probs=50.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeC------C---eEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 273 MDTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFN------D---FAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 273 ~~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~------d---~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
....|.|.|++++|++..|.++|.+.|++|..+...+.+ + |.+... ... ....+.+.|+++|...+
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~---~~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARV---DSGCNLMQLQEEFDALC 166 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEE---CTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeC---CCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999998875 1 222222 111 12457889999998765
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=91.32 E-value=0.44 Score=46.10 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=50.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFNDFAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.+.|.|.|++|||+...|...|-++|..|+.++.+..++..+-....... ....+.++|+.+|...+
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP--ADVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC--HHHHTSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec--CCcCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999888833333233321 11234578988887764
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=89.77 E-value=1.7 Score=41.45 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=50.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCF--ND-FAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~--~d-~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.+.|.+.|++++|+...|-..|-+.|+.|+.++.... ++ |.+.+. ... .....+.++|+++|...+
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~-~~~--~~~~~~~~~L~~~l~~la 90 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHE-IRA--DTLPFDLDGFREAFTPIA 90 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEE-EEG--GGSSSCHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEE-Eec--CCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999999888865 34 444332 222 122467889999987654
No 27
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=89.30 E-value=0.59 Score=38.87 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=33.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeC
Q 018897 276 RVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFN 311 (349)
Q Consensus 276 ~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~ 311 (349)
.|+|.|.+|+|+|.+|+++|-+.++++...++...+
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g 37 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 589999999999999999999999999999887663
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=88.76 E-value=2 Score=40.56 Aligned_cols=65 Identities=8% Similarity=-0.020 Sum_probs=49.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCF--ND-FAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~--~d-~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.+.|.|.|++++|+...|-..|-+.|+.|..++..+. ++ |.+.+. .... . ..+.++|+++|...+
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~-~~~~-~--~~~~~~L~~~f~~la 75 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVE-FRQP-D--DFDEAGFRAGLAERS 75 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEE-EECC-S--SCCHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEE-EecC-C--CCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999999888742 33 444332 2221 1 477899999997755
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=87.46 E-value=2.3 Score=40.17 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=49.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCF--ND-FAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~--~d-~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.+.|.+.|++++|+...|-..|-+.|+.|..++..+. ++ |.+.+. ... .....+.++|+++|...+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~-~~~--~~~~~~~~~L~~~f~~la 74 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVV-FNA--AAKVIPLASLRTGFGVIA 74 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEE-EEE--SSCCCCHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEE-EEc--CCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999998887632 33 444332 222 122467899999997755
No 30
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=87.24 E-value=2.2 Score=40.46 Aligned_cols=68 Identities=10% Similarity=0.222 Sum_probs=48.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEee--eCC-eEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISC--FND-FAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt--~~d-~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.+.|.+.|++++|+...|-..|-+.|+.|+.++..+ .++ |.+.+. ..........+.++|+++|...+
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~-~~~~~~~~~~~~~~L~~~f~~la 80 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCV-FHATDDADALRVDALRREFEPIA 80 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEE-EEECC----CCHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEE-EEccCcccCCCHHHHHHHHHHHH
Confidence 467999999999999999999999999999988874 233 444332 22110011367889999987654
No 31
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=80.19 E-value=5.5 Score=37.56 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=45.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEee--eCC-eEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISC--FND-FAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt--~~d-~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.+.|.+.|++++|+...|-..|-+.|+.|+.++..+ .++ |.+.+. .... . .+.++|+++|...+
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~-~~~~--~--~~~~~L~~~f~~la 73 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVS-VEIP--V--AGVNDFNSAFGKVV 73 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEE-EECC--C-----CHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEE-EEcC--C--CCHHHHHHHHHHHH
Confidence 467999999999999999999999999999988863 233 444332 2221 1 23448888887654
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=77.73 E-value=2.7 Score=36.66 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=43.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCC--eEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 276 RVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFND--FAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 276 ~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d--~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.|.|...+++|+|.+|...|...|+.|.+.++....+ .+.-.+.... + .-..+.|...|.+..
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--d--~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--D--EKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--C--HHHHHHHHHHHHHST
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--c--HHHHHHHHHHHcCCC
Confidence 5778889999999999999999999999988876543 3332333332 1 223456666666543
No 33
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=77.24 E-value=4.7 Score=37.12 Aligned_cols=62 Identities=16% Similarity=0.023 Sum_probs=42.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeC----CeEEEEEeeecccCCccCCHHHHHHHHHH
Q 018897 274 DTRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFN----DFAMQASCSEGVEQRETLSCEDIKQALFR 340 (349)
Q Consensus 274 ~v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~----d~vl~a~~se~~e~~~~is~edIkqaL~~ 340 (349)
.+.|.|.+.+|+|+|.+|+++|-+.+..|.+.+..... +...... .+. ... ..++|-..|.+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~-IEV---~d~-~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY-FEI---EGG-DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE-EEE---CSS-CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE-EEE---CCC-CHHHHHHHHhC
Confidence 46788999999999999999999999999999998864 3222222 333 223 77777777765
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=71.52 E-value=3.4 Score=36.16 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=43.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeC--CeEEEEEeeecccCCccCCHHHHHHHHHHHh
Q 018897 276 RVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFN--DFAMQASCSEGVEQRETLSCEDIKQALFRNA 342 (349)
Q Consensus 276 ~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~--d~vl~a~~se~~e~~~~is~edIkqaL~~~~ 342 (349)
.|.|...++||+|.+|...|...|+.|.+.++.... +.+.-++.... + .-..+.|...|.+.+
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--d--~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--P--DEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--C--HHHHHHHHHHHHHST
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--c--HHHHHHHHHHhcCCC
Confidence 577888999999999999999999999998887654 33332333332 1 233456666666543
No 35
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=70.96 E-value=26 Score=28.53 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=37.2
Q ss_pred EEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEEeeecccCCccCCHHHHHHHHHHHhhc
Q 018897 277 VEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFNDFAMQASCSEGVEQRETLSCEDIKQALFRNAGY 344 (349)
Q Consensus 277 I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d~vl~a~~se~~e~~~~is~edIkqaL~~~~g~ 344 (349)
|-+.-+++||.+.+++++|.+.|+.|.....+.-++...-++.. -+.+...++|.+ +||
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--------~d~~~A~~~L~~-~g~ 133 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--------SNMDKCIEVLKE-KKV 133 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--------SCHHHHHHHHHH-TTC
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--------CCHHHHHHHHHH-cCC
Confidence 44455799999999999999999999754444222322212111 156666666665 344
No 36
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=69.46 E-value=6.5 Score=35.35 Aligned_cols=63 Identities=14% Similarity=0.268 Sum_probs=44.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCC--eEEEEEeeecccCCccCCHHHHHHHHHHH
Q 018897 275 TRVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFND--FAMQASCSEGVEQRETLSCEDIKQALFRN 341 (349)
Q Consensus 275 v~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d--~vl~a~~se~~e~~~~is~edIkqaL~~~ 341 (349)
-.|.|...++||.|.+|...|...|+.|.+..+....+ .+.-++.+.. .....+.|...|.+.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g----~e~~ieqL~kQL~KL 94 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG----DDKTIEQIEKQAYKL 94 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE----CTTHHHHHHHHHTTS
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC----CHHHHHHHHHHhcCc
Confidence 35777778999999999999999999999888875444 2322333332 133456777777664
No 37
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=62.30 E-value=48 Score=26.84 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=30.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCC
Q 018897 276 RVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFND 312 (349)
Q Consensus 276 ~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d 312 (349)
.|.|..+++||.|.+|...|.+.|+.|....+....+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 5677778999999999999999999999766654444
No 38
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.94 E-value=53 Score=23.80 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhHh
Q 018897 187 ERRRRKRLNDRLSMLRS 203 (349)
Q Consensus 187 ER~RR~kin~~~~~Lrs 203 (349)
||++|.+...+..+-++
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 46666666777777666
No 39
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=35.63 E-value=1.2e+02 Score=25.66 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=28.2
Q ss_pred eeeecCeeEEEEEc---CCCCchHHHHHHHHHhCCCeEEE
Q 018897 268 VERTNMDTRVEICC---AGKPGLLLSTVTSLEALGLEIQQ 304 (349)
Q Consensus 268 V~~~~~~v~I~I~C---~~rpGLL~~Il~aLe~LgLeVv~ 304 (349)
|.....-..|.|.. ...+|++.+++++|.+.|+.|.-
T Consensus 89 v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~ 128 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL 128 (178)
T ss_dssp EEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE
Confidence 33344555666655 46889999999999999999985
No 40
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.32 E-value=51 Score=22.39 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018897 217 LADTIDYMKELLDKISSLQQEI 238 (349)
Q Consensus 217 L~~AI~YIk~Lq~~v~~L~~~~ 238 (349)
+.+--+||++|+++..+|+.-+
T Consensus 5 vkelknyiqeleernaelknlk 26 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHH
Confidence 4566789999999988887643
No 41
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=33.72 E-value=2.1e+02 Score=23.83 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=27.5
Q ss_pred ecCeeEEEEEcC---CCCchHHHHHHHHHhCCCeEEEE
Q 018897 271 TNMDTRVEICCA---GKPGLLLSTVTSLEALGLEIQQC 305 (349)
Q Consensus 271 ~~~~v~I~I~C~---~rpGLL~~Il~aLe~LgLeVv~A 305 (349)
...-..|.|... .++|.+.+++++|.+.|+.|...
T Consensus 100 ~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i 137 (167)
T 2re1_A 100 DDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI 137 (167)
T ss_dssp ESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred cCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence 344556666664 48999999999999999999863
No 42
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=32.94 E-value=33 Score=24.69 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 018897 222 DYMKELLDKISSLQQEIQAG 241 (349)
Q Consensus 222 ~YIk~Lq~~v~~L~~~~e~~ 241 (349)
.||..|+++|+.|+..++..
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999987654
No 43
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=32.21 E-value=39 Score=31.62 Aligned_cols=53 Identities=25% Similarity=0.158 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeeecccCCccCCHHHHHHHHHHHhhcCCC
Q 018897 285 PGLLLSTVTSLEALGLEIQQCVISCFND-FAMQASCSEGVEQRETLSCEDIKQALFRNAGYGGK 347 (349)
Q Consensus 285 pGLL~~Il~aLe~LgLeVv~A~ISt~~d-~vl~a~~se~~e~~~~is~edIkqaL~~~~g~gg~ 347 (349)
+---.+|++.|++||+.= ++ ..+|++-... +-.+..++.|.+||++++|..|+
T Consensus 12 ~~T~~~L~~~L~~LGI~~--------Gd~llVHsSl~~l--G~v~gg~~~vi~AL~~~vg~~GT 65 (273)
T 2nyg_A 12 PRTKQSITEDLKALGLKK--------GMTVLVHSSLSSI--GWVNGGAVAVIQALIDVVTEEGT 65 (273)
T ss_dssp CBCHHHHHHHHHHHTCCT--------TCEEEEEECSGGG--CCBTTHHHHHHHHHHHHHTTTSE
T ss_pred CcCHHHHHHHHHHcCCCC--------CCEEEEEechHHh--CCCCCCHHHHHHHHHHHhCCCCe
Confidence 344568999999998851 11 1456554444 34556699999999999998875
No 44
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.78 E-value=59 Score=21.82 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=24.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018897 211 MDRTSILADTIDYMKELLDKISSLQQEIQ 239 (349)
Q Consensus 211 ~dKaSIL~~AI~YIk~Lq~~v~~L~~~~e 239 (349)
+..+..|+++-+-|..|+.+++.|++++-
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999998763
No 45
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=29.65 E-value=2.3e+02 Score=23.50 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=26.0
Q ss_pred cCeeEEEEEcC---CCCchHHHHHHHHHhCCCeEEEE
Q 018897 272 NMDTRVEICCA---GKPGLLLSTVTSLEALGLEIQQC 305 (349)
Q Consensus 272 ~~~v~I~I~C~---~rpGLL~~Il~aLe~LgLeVv~A 305 (349)
..-..|.|... .+||++.+++++|.+.|+.|...
T Consensus 93 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i 129 (167)
T 2dt9_A 93 PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI 129 (167)
T ss_dssp CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence 44445555554 48999999999999999999643
No 46
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=28.40 E-value=46 Score=31.15 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=37.6
Q ss_pred CCchHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeeecccCCccCCHHHHHHHHHHHhhcCCC
Q 018897 284 KPGLLLSTVTSLEALGLEIQQCVISCFND-FAMQASCSEGVEQRETLSCEDIKQALFRNAGYGGK 347 (349)
Q Consensus 284 rpGLL~~Il~aLe~LgLeVv~A~ISt~~d-~vl~a~~se~~e~~~~is~edIkqaL~~~~g~gg~ 347 (349)
++---.+|++.|++||+.= ++ ..+|++-... +-.+-.++.|.+||++++|..|+
T Consensus 13 ~~~t~~~l~~~L~~LGi~~--------Gd~llVHsSl~~l--G~v~gg~~~vi~AL~~~vg~~GT 67 (268)
T 3ijw_A 13 LPNTIKTITNDLRKLGLKK--------GMTVIVHSSLSSI--GWISGGAVAVVEALMEVITEEGT 67 (268)
T ss_dssp SCBCHHHHHHHHHHHTCCT--------TCEEEEEECTGGG--CCBTTHHHHHHHHHHHHHCTTSE
T ss_pred CCcCHHHHHHHHHHcCCCC--------CCEEEEEechHHh--CCCCCCHHHHHHHHHHHhCCCCe
Confidence 3445678999999999852 11 1455554443 34455689999999999998775
No 47
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=28.13 E-value=38 Score=32.04 Aligned_cols=51 Identities=22% Similarity=0.140 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEEeeecccCCccCCHHHHHHHHHHHhhcCCC
Q 018897 287 LLLSTVTSLEALGLEIQQCVISCFND-FAMQASCSEGVEQRETLSCEDIKQALFRNAGYGGK 347 (349)
Q Consensus 287 LL~~Il~aLe~LgLeVv~A~ISt~~d-~vl~a~~se~~e~~~~is~edIkqaL~~~~g~gg~ 347 (349)
--.+|++.|++||+.= ++ ..+|++-... +-.+..++.|.+||++++|..|+
T Consensus 23 T~~~L~~~L~~LGI~~--------Gd~llVHsSL~~l--G~v~Gga~~vi~AL~~~vg~~GT 74 (286)
T 3sma_A 23 TRDRLASDLAALGVRP--------GGVLLVHASLSAL--GWVCGGAQAVVLALQDAVGKEGT 74 (286)
T ss_dssp CHHHHHHHHHHHTCCT--------TCEEEEEECSTTS--CEETTHHHHHHHHHHHHHCTTCE
T ss_pred CHHHHHHHHHHcCCCC--------CCEEEEEechHHh--CCCCCCHHHHHHHHHHHhcCCCE
Confidence 4578999999998852 11 1445544433 33344589999999999998885
No 48
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=28.07 E-value=33 Score=20.78 Aligned_cols=9 Identities=67% Similarity=0.866 Sum_probs=6.6
Q ss_pred HHHHHHHHH
Q 018897 185 MAERRRRKR 193 (349)
Q Consensus 185 ~aER~RR~k 193 (349)
-+||+||..
T Consensus 11 gaerrrrra 19 (26)
T 1g70_B 11 GAERRRRRA 19 (26)
T ss_pred hHHHHHHHH
Confidence 588888754
No 49
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=26.85 E-value=59 Score=27.33 Aligned_cols=41 Identities=12% Similarity=0.315 Sum_probs=31.5
Q ss_pred eeeecCeeEEEEEc-CCCCchHHHHHHHHHhCCCeEEEEEEe
Q 018897 268 VERTNMDTRVEICC-AGKPGLLLSTVTSLEALGLEIQQCVIS 308 (349)
Q Consensus 268 V~~~~~~v~I~I~C-~~rpGLL~~Il~aLe~LgLeVv~A~IS 308 (349)
|....+...|.|.. ++++|.+.+|+++|.+.|+.|.....+
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 33445566777774 789999999999999999998755443
No 50
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=26.83 E-value=1.5e+02 Score=25.07 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.5
Q ss_pred eeecCeeEEEEE-cCCCCchHHHHHHHHHhCCCeEEEEEEe
Q 018897 269 ERTNMDTRVEIC-CAGKPGLLLSTVTSLEALGLEIQQCVIS 308 (349)
Q Consensus 269 ~~~~~~v~I~I~-C~~rpGLL~~Il~aLe~LgLeVv~A~IS 308 (349)
....+.+.|.|. -++++|.+.+|++.|.+.|+.|.-...+
T Consensus 10 a~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 334556677774 4789999999999999999766644443
No 51
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.74 E-value=50 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018897 222 DYMKELLDKISSLQQEIQA 240 (349)
Q Consensus 222 ~YIk~Lq~~v~~L~~~~e~ 240 (349)
.||..|+++++.|+..+..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5777888888888776654
No 52
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=26.35 E-value=2.4e+02 Score=24.05 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=26.8
Q ss_pred cCeeEEEEEc---CCCCchHHHHHHHHHhCCCeEEEEE
Q 018897 272 NMDTRVEICC---AGKPGLLLSTVTSLEALGLEIQQCV 306 (349)
Q Consensus 272 ~~~v~I~I~C---~~rpGLL~~Il~aLe~LgLeVv~A~ 306 (349)
..-..|.|.. ...+|++.+++++|.+.|+.|...+
T Consensus 94 ~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 94 DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 3444555444 4789999999999999999998655
No 53
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.32 E-value=68 Score=24.97 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 018897 217 LADTIDYMKELLDKISSLQQEIQA 240 (349)
Q Consensus 217 L~~AI~YIk~Lq~~v~~L~~~~e~ 240 (349)
+..||+-|.-||.+|++|+++...
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999886543
No 54
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.47 E-value=1.5e+02 Score=23.64 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018897 217 LADTIDYMKELLDKISSLQQEI 238 (349)
Q Consensus 217 L~~AI~YIk~Lq~~v~~L~~~~ 238 (349)
.+.|=+||..|+++|+-|++.+
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 4568899999999999999865
No 55
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=22.15 E-value=3.2e+02 Score=25.20 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=43.2
Q ss_pred CeeEEEEEc---CCCCchHHHHHHHHHhCCCeEEEEEEeeeC----CeEEEEEeeecccCCccCCHHHHHHHHHHHhh
Q 018897 273 MDTRVEICC---AGKPGLLLSTVTSLEALGLEIQQCVISCFN----DFAMQASCSEGVEQRETLSCEDIKQALFRNAG 343 (349)
Q Consensus 273 ~~v~I~I~C---~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~----d~vl~a~~se~~e~~~~is~edIkqaL~~~~g 343 (349)
...-|-+.. .++||.|.++|..|...|++...-..-... ++.+.+ +. . ......++++|.+...
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi---D~---e-~~~d~~v~~aL~~L~~ 255 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV---QA---D-SAITTDIKKVIAILET 255 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE---EE---S-CCSCHHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEE---EE---e-cCCcHHHHHHHHHHHH
Confidence 345566667 789999999999999999999876555543 334432 22 1 2333567777776543
No 56
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=21.81 E-value=1.1e+02 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=28.2
Q ss_pred ecCeeEEEEEc-CCCCchHHHHHHHHHhCCCeEEEE
Q 018897 271 TNMDTRVEICC-AGKPGLLLSTVTSLEALGLEIQQC 305 (349)
Q Consensus 271 ~~~~v~I~I~C-~~rpGLL~~Il~aLe~LgLeVv~A 305 (349)
..+.+.|.|.- +++||.+.+|+.+|.+.|+.|---
T Consensus 32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI 67 (200)
T 4go7_X 32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMV 67 (200)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCE
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEE
Confidence 35566777764 789999999999999999888643
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.79 E-value=70 Score=24.03 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018897 222 DYMKELLDKISSLQQEI 238 (349)
Q Consensus 222 ~YIk~Lq~~v~~L~~~~ 238 (349)
.||++|+.+|..|+...
T Consensus 29 ~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 29 DHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68888888888887644
No 58
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=21.22 E-value=2.4e+02 Score=26.23 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=41.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhCCCeEEEEEEeeeCCe-EEEEEeeecccCCccCCHHHHHHHHHHHhhc
Q 018897 276 RVEICCAGKPGLLLSTVTSLEALGLEIQQCVISCFNDF-AMQASCSEGVEQRETLSCEDIKQALFRNAGY 344 (349)
Q Consensus 276 ~I~I~C~~rpGLL~~Il~aLe~LgLeVv~A~ISt~~d~-vl~a~~se~~e~~~~is~edIkqaL~~~~g~ 344 (349)
-|-+..+++||.|.++|..|...|++...-..=...+. -=+.|..+. ........++++|.+....
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~---eg~~~d~~v~~aL~~L~~~ 268 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF---IGHREDQNVHNALENLREF 268 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE---ESCTTSHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE---ecCCCcHHHHHHHHHHHHh
Confidence 44444568999999999999999999987665554431 111222332 1133446678888776543
No 59
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=21.03 E-value=94 Score=18.78 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 018897 215 SILADTIDYMKELLDKISS 233 (349)
Q Consensus 215 SIL~~AI~YIk~Lq~~v~~ 233 (349)
|-|-+|-.|+.+|+++++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5577888999999888764
Done!