BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018898
         (349 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3R66|A Chain A, Crystal Structure Of Human Isg15 In Complex With Ns1
           N-Terminal Region From Influenza Virus B, Northeast
           Structural Genomics Consortium Target Ids Hx6481,
           Hr2873, And Or2
 pdb|3R66|B Chain B, Crystal Structure Of Human Isg15 In Complex With Ns1
           N-Terminal Region From Influenza Virus B, Northeast
           Structural Genomics Consortium Target Ids Hx6481,
           Hr2873, And Or2
 pdb|3SDL|A Chain A, Crystal Structure Of Human Isg15 In Complex With Ns1
           N-Terminal Region From Influenza B Virus, Northeast
           Structural Genomics Consortium Target Ids Hx6481,
           Hr2873, And Or2
 pdb|3SDL|B Chain B, Crystal Structure Of Human Isg15 In Complex With Ns1
           N-Terminal Region From Influenza B Virus, Northeast
           Structural Genomics Consortium Target Ids Hx6481,
           Hr2873, And Or2
          Length = 113

 Score = 31.2 bits (69), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 293 PSRNNFRTYAQENESRPRTHTRTTPEAETDRRAKVEDDREIGGDLLKI 340
           P ++      ++ ESR +TH ++ PE   ++R  +E+ + IG  ++K+
Sbjct: 53  PGQDRLHRLKRKLESRIKTHNKSEPE---NKRMSLEERKAIGVKMMKV 97


>pdb|1XEQ|A Chain A, Crystal Tructure Of Rna Binding Domain Of Influenza B
           Virus Non- Structural Protein
 pdb|1XEQ|B Chain B, Crystal Tructure Of Rna Binding Domain Of Influenza B
           Virus Non- Structural Protein
          Length = 103

 Score = 31.2 bits (69), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 293 PSRNNFRTYAQENESRPRTHTRTTPEAETDRRAKVEDDREIGGDLLKI 340
           P ++      ++ ESR +TH ++ PE   ++R  +E+ + IG  ++K+
Sbjct: 43  PGQDRLHRLKRKLESRIKTHNKSEPE---NKRMSLEERKAIGVKMMKV 87


>pdb|3RT3|C Chain C, Complex Of Influenza Virus Protein With Host Anti-Viral
           Factor
          Length = 109

 Score = 31.2 bits (69), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 293 PSRNNFRTYAQENESRPRTHTRTTPEAETDRRAKVEDDREIGGDLLKI 340
           P ++      ++ ESR +TH ++ PE   ++R  +E+ + IG  ++K+
Sbjct: 43  PGQDRLHRLKRKLESRIKTHNKSEPE---NKRMSLEERKAIGVKMMKV 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,077,627
Number of Sequences: 62578
Number of extensions: 377318
Number of successful extensions: 914
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 4
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)