Query 018898
Match_columns 349
No_of_seqs 254 out of 1694
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 07:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 68.5 2.1 7.2E-05 29.1 1.5 28 140-167 18-45 (56)
2 3j21_g 50S ribosomal protein L 60.2 4.2 0.00014 27.2 1.8 28 140-167 13-40 (51)
3 1joc_A EEA1, early endosomal a 47.5 7.8 0.00027 30.8 1.8 24 142-165 70-95 (125)
4 2dkt_A Ring finger and CHY zin 46.8 6.7 0.00023 32.0 1.3 44 137-180 79-126 (143)
5 1wfk_A Zinc finger, FYVE domai 45.0 7.9 0.00027 28.7 1.4 24 141-164 9-34 (88)
6 1vfy_A Phosphatidylinositol-3- 41.7 7.2 0.00025 27.8 0.7 23 143-165 13-37 (73)
7 1dvp_A HRS, hepatocyte growth 40.7 10 0.00035 33.0 1.6 24 142-165 162-187 (220)
8 1x4u_A Zinc finger, FYVE domai 38.4 8.8 0.0003 28.1 0.7 23 142-164 15-39 (84)
9 2yw8_A RUN and FYVE domain-con 37.3 9.3 0.00032 27.8 0.7 25 141-165 19-45 (82)
10 1z2q_A LM5-1; membrane protein 37.0 9.5 0.00032 27.9 0.7 25 141-165 21-47 (84)
11 3j20_Y 30S ribosomal protein S 34.5 13 0.00045 24.5 1.0 16 134-149 12-27 (50)
12 3zyq_A Hepatocyte growth facto 29.3 14 0.00049 32.2 0.7 24 142-165 165-190 (226)
13 3t7l_A Zinc finger FYVE domain 28.7 16 0.00054 27.1 0.7 25 141-165 20-46 (90)
14 3u5e_m 60S ribosomal protein L 28.7 21 0.00072 28.0 1.5 25 140-164 92-118 (128)
15 1y02_A CARP2, FYVE-ring finger 28.2 14 0.00048 29.2 0.3 23 142-164 20-44 (120)
16 3arc_I Photosystem II reaction 27.5 89 0.0031 19.2 3.8 12 85-96 23-34 (38)
17 2cr8_A MDM4 protein; ZF-ranbp 24.6 26 0.0009 23.2 1.1 20 143-162 13-32 (53)
18 2pg3_A Queuosine biosynthesis 21.9 23 0.00077 30.6 0.5 19 150-168 190-208 (232)
19 2dkt_A Ring finger and CHY zin 20.8 19 0.00065 29.3 -0.2 31 143-173 103-136 (143)
20 2c6a_A Ubiquitin-protein ligas 20.7 34 0.0011 22.2 1.0 21 142-162 14-34 (46)
21 2vrw_B P95VAV, VAV1, proto-onc 20.2 32 0.0011 32.4 1.2 26 140-165 356-384 (406)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=68.54 E-value=2.1 Score=29.11 Aligned_cols=28 Identities=29% Similarity=0.628 Sum_probs=24.0
Q ss_pred ceeeccccCCcCCCCCcccccccccccc
Q 018898 140 KVKYCDTCKLYRPPRCSHCSVCDNCVER 167 (349)
Q Consensus 140 ~~k~C~tC~~~rP~Rs~HC~~C~~CV~r 167 (349)
..+.|..|...-|+|+.-|+.||..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 4589999999999999999999865444
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.22 E-value=4.2 Score=27.16 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.1
Q ss_pred ceeeccccCCcCCCCCcccccccccccc
Q 018898 140 KVKYCDTCKLYRPPRCSHCSVCDNCVER 167 (349)
Q Consensus 140 ~~k~C~tC~~~rP~Rs~HC~~C~~CV~r 167 (349)
..+.|..|...-|+++..|+.||.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 4589999999999999999999876444
No 3
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.48 E-value=7.8 Score=30.77 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=16.6
Q ss_pred eeccccCCc--CCCCCcccccccccc
Q 018898 142 KYCDTCKLY--RPPRCSHCSVCDNCV 165 (349)
Q Consensus 142 k~C~tC~~~--rP~Rs~HC~~C~~CV 165 (349)
..|..|... --.|-|||+.||+-+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE
Confidence 467777652 235889999998743
No 4
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=46.80 E-value=6.7 Score=32.02 Aligned_cols=44 Identities=25% Similarity=0.603 Sum_probs=29.9
Q ss_pred eeeceeeccccCCcCCCCC-cccccccccccc---ccccccccCcccc
Q 018898 137 IVVKVKYCDTCKLYRPPRC-SHCSVCDNCVER---FDHHCPWVGQCIG 180 (349)
Q Consensus 137 ~~~~~k~C~tC~~~rP~Rs-~HC~~C~~CV~r---~DHHCpWv~nCIG 180 (349)
......||..|+.+.+.+. .||..||-|-.. ---||.=-|.|+.
T Consensus 79 ~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 79 TLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred ccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 4455679999999976654 788888888775 1245666566643
No 5
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=44.96 E-value=7.9 Score=28.74 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=17.1
Q ss_pred eeeccccCCc--CCCCCccccccccc
Q 018898 141 VKYCDTCKLY--RPPRCSHCSVCDNC 164 (349)
Q Consensus 141 ~k~C~tC~~~--rP~Rs~HC~~C~~C 164 (349)
...|..|... --.|-|||+.||+-
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCE
Confidence 4578888652 23588999999874
No 6
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.74 E-value=7.2 Score=27.76 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=15.9
Q ss_pred eccccCCc--CCCCCcccccccccc
Q 018898 143 YCDTCKLY--RPPRCSHCSVCDNCV 165 (349)
Q Consensus 143 ~C~tC~~~--rP~Rs~HC~~C~~CV 165 (349)
-|..|... --.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 57777642 235889999998743
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.73 E-value=10 Score=32.98 Aligned_cols=24 Identities=25% Similarity=0.719 Sum_probs=17.3
Q ss_pred eeccccCCc--CCCCCcccccccccc
Q 018898 142 KYCDTCKLY--RPPRCSHCSVCDNCV 165 (349)
Q Consensus 142 k~C~tC~~~--rP~Rs~HC~~C~~CV 165 (349)
..|..|... --.|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 578888642 235889999998744
No 8
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.43 E-value=8.8 Score=28.10 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=16.0
Q ss_pred eeccccCCc--CCCCCccccccccc
Q 018898 142 KYCDTCKLY--RPPRCSHCSVCDNC 164 (349)
Q Consensus 142 k~C~tC~~~--rP~Rs~HC~~C~~C 164 (349)
..|..|... --.|-|||+.||+-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcE
Confidence 466666542 23588999999874
No 9
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.31 E-value=9.3 Score=27.84 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=17.2
Q ss_pred eeeccccCCc--CCCCCcccccccccc
Q 018898 141 VKYCDTCKLY--RPPRCSHCSVCDNCV 165 (349)
Q Consensus 141 ~k~C~tC~~~--rP~Rs~HC~~C~~CV 165 (349)
...|..|... --.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 3567777652 235889999998743
No 10
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=36.98 E-value=9.5 Score=27.94 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=17.2
Q ss_pred eeeccccCCc--CCCCCcccccccccc
Q 018898 141 VKYCDTCKLY--RPPRCSHCSVCDNCV 165 (349)
Q Consensus 141 ~k~C~tC~~~--rP~Rs~HC~~C~~CV 165 (349)
...|..|... --.|-|||+.||+-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 3567777653 135889999998743
No 11
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.49 E-value=13 Score=24.50 Aligned_cols=16 Identities=38% Similarity=0.962 Sum_probs=11.9
Q ss_pred cceeeeceeeccccCC
Q 018898 134 DGRIVVKVKYCDTCKL 149 (349)
Q Consensus 134 ~g~~~~~~k~C~tC~~ 149 (349)
||.+....++|+.|..
T Consensus 12 ~~kv~~~~k~CP~CG~ 27 (50)
T 3j20_Y 12 DGKVIRKNKFCPRCGP 27 (50)
T ss_dssp SSCEECSSEECSSSCS
T ss_pred CCEEEEecccCCCCCC
Confidence 4556667899999976
No 12
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.33 E-value=14 Score=32.24 Aligned_cols=24 Identities=25% Similarity=0.703 Sum_probs=16.8
Q ss_pred eeccccCCc--CCCCCcccccccccc
Q 018898 142 KYCDTCKLY--RPPRCSHCSVCDNCV 165 (349)
Q Consensus 142 k~C~tC~~~--rP~Rs~HC~~C~~CV 165 (349)
..|..|... ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 478888631 123789999998853
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.67 E-value=16 Score=27.15 Aligned_cols=25 Identities=24% Similarity=0.644 Sum_probs=17.0
Q ss_pred eeeccccCCc--CCCCCcccccccccc
Q 018898 141 VKYCDTCKLY--RPPRCSHCSVCDNCV 165 (349)
Q Consensus 141 ~k~C~tC~~~--rP~Rs~HC~~C~~CV 165 (349)
...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 3568888642 234789999998743
No 14
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=28.66 E-value=21 Score=28.01 Aligned_cols=25 Identities=28% Similarity=0.777 Sum_probs=21.9
Q ss_pred ceeeccccCCcCCCCCcccc--ccccc
Q 018898 140 KVKYCDTCKLYRPPRCSHCS--VCDNC 164 (349)
Q Consensus 140 ~~k~C~tC~~~rP~Rs~HC~--~C~~C 164 (349)
..+.|..|...-|+|++.|+ .||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 46899999999999999999 48764
No 15
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.17 E-value=14 Score=29.16 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=15.8
Q ss_pred eeccccCCc--CCCCCccccccccc
Q 018898 142 KYCDTCKLY--RPPRCSHCSVCDNC 164 (349)
Q Consensus 142 k~C~tC~~~--rP~Rs~HC~~C~~C 164 (349)
..|..|... --.|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 356677542 23588999999884
No 16
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=27.49 E-value=89 Score=19.17 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=8.2
Q ss_pred hhccCCCCCCCC
Q 018898 85 TSARDPGIVPRN 96 (349)
Q Consensus 85 t~~~DPG~vP~~ 96 (349)
-...|||.-|..
T Consensus 23 fLsnDP~RNP~r 34 (38)
T 3arc_I 23 FLSGDPARNPKR 34 (38)
T ss_dssp HHTTGGGCSSSC
T ss_pred ccCCCCCCCCCc
Confidence 346799977654
No 17
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.61 E-value=26 Score=23.18 Aligned_cols=20 Identities=30% Similarity=0.722 Sum_probs=12.8
Q ss_pred eccccCCcCCCCCccccccc
Q 018898 143 YCDTCKLYRPPRCSHCSVCD 162 (349)
Q Consensus 143 ~C~tC~~~rP~Rs~HC~~C~ 162 (349)
-|..|...-||=-.||..|-
T Consensus 13 kC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecccccccCCCccchhHHHH
Confidence 46667666666666666553
No 18
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=21.92 E-value=23 Score=30.59 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=15.0
Q ss_pred cCCCCCccccccccccccc
Q 018898 150 YRPPRCSHCSVCDNCVERF 168 (349)
Q Consensus 150 ~rP~Rs~HC~~C~~CV~r~ 168 (349)
+++.|..||..|+.|.+|.
T Consensus 190 ~~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 190 YNGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TTSCCTTTTSCSHHHHHHH
T ss_pred cCCCCCCcCCcCHhHHHHH
Confidence 4566668999999998873
No 19
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=20.80 E-value=19 Score=29.30 Aligned_cols=31 Identities=26% Similarity=0.710 Sum_probs=20.6
Q ss_pred eccccCCcCCCCCcccccccccccc--cc-cccc
Q 018898 143 YCDTCKLYRPPRCSHCSVCDNCVER--FD-HHCP 173 (349)
Q Consensus 143 ~C~tC~~~rP~Rs~HC~~C~~CV~r--~D-HHCp 173 (349)
.|..|.+-+..--.||..||.|+.. .| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 3444444444557899999999653 44 7774
No 20
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=20.68 E-value=34 Score=22.17 Aligned_cols=21 Identities=38% Similarity=0.822 Sum_probs=15.4
Q ss_pred eeccccCCcCCCCCccccccc
Q 018898 142 KYCDTCKLYRPPRCSHCSVCD 162 (349)
Q Consensus 142 k~C~tC~~~rP~Rs~HC~~C~ 162 (349)
=-|..|+..-||=..||..|-
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTC
T ss_pred EecccccccCCCccchhhHHH
Confidence 458888888888777777664
No 21
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=20.16 E-value=32 Score=32.43 Aligned_cols=26 Identities=15% Similarity=0.416 Sum_probs=18.8
Q ss_pred ceeeccccCCcC---CCCCcccccccccc
Q 018898 140 KVKYCDTCKLYR---PPRCSHCSVCDNCV 165 (349)
Q Consensus 140 ~~k~C~tC~~~r---P~Rs~HC~~C~~CV 165 (349)
+..+|..|...- -.|-+||+.|+..|
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~ 384 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPA 384 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEE
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCcc
Confidence 457999997643 35889999887533
Done!