BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018900
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LYA9|CP41A_ARATH Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1
Length = 406
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/289 (82%), Positives = 253/289 (87%), Gaps = 1/289 (0%)
Query: 56 SSRRSSVSAFTVKASA-AEKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDEN 114
+SRR S FTVKAS+ EKK VLIVNTNSGGHAVIGFY AKELL +GH VTI+TVGDE+
Sbjct: 60 TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 119
Query: 115 SDKMKKPPFNRFNEIVSAGGKTVWGDPAEVGNVVGGVTFDVVLDNNGKNLDAVRPVADWA 174
S+KMKKPPFNRF+EIVS GGKTVWG+PA V NVVGG TFDVVLDNNGK+LD VRPV DWA
Sbjct: 120 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 179
Query: 175 KSSGVKQFLFISSAGIYKPADEPPHVEGDVVKPDAGHVQVEKYISENFSNWASFRPQYMI 234
KSSGVKQFLFISSAGIYK ++PPHVEGD VK DAGHV VEKY++E F NWASFRPQYMI
Sbjct: 180 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMI 239
Query: 235 GSGNNKDCEEWFFDRIVRKRPVPIPGSGMQFTNIAHVRDLSSMLTLAVENPEAASSNIFN 294
GSGNNKDCEEWFFDRIVR R VPIPGSG+Q TNI+HVRDLSSMLT AV NPEAAS NIFN
Sbjct: 240 GSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFN 299
Query: 295 LVSDRAVTLDGMAKLCAQAAGLPVEIVHYDPKAAGIDAKKAFPFRNMVF 343
VSDRAVTLDGMAKLCA AAG VEIVHYDPKA G+DAKKAF FRNM F
Sbjct: 300 CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHF 348
>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
Length = 378
Score = 181 bits (460), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 156/284 (54%), Gaps = 18/284 (6%)
Query: 70 SAAEKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRFNEI 129
SA+ +KK+LI+ GG IG +L++ L+ GH+VT+ T G S K+ P +
Sbjct: 49 SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRG--KSPIAKQLPGESDQDF 102
Query: 130 VSAGGKTVW--GDPAEVGNVVGGVT---FDVVLDNNGKNLDAVRPVADWAKSSGVKQFLF 184
K + GD + V ++ FDVV D NG+ + V P+ + ++Q+++
Sbjct: 103 ADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYIY 160
Query: 185 ISSAGIYKPADEPPHVEGDVVKPDAGH---VQVEKYISENFSNWASFRPQYMIGSGNNKD 241
SSAG+Y +D PH E D V P + H ++ E + NW S RP Y+ G N
Sbjct: 161 CSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNP 220
Query: 242 CEEWFFDRIVRKRPVPIPGSGMQFTNIAHVRDLSSMLTLAVENPEAASSNIFNLVSDRAV 301
EEWFF R+ RP+P+P SG+Q + + HV+DL++ L V E AS IFN+ ++ V
Sbjct: 221 VEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKYV 279
Query: 302 TLDGMAKLCAQAAGLPV-EIVHYDPKAAGIDAKKAFPFRNMVFI 344
T DG+AK CA+A G P EIVHY+PK KKAFPFR+ F
Sbjct: 280 TFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFF 323
>sp|Q45291|GALE_CORGL UDP-glucose 4-epimerase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=galE PE=3 SV=2
Length = 329
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 105/282 (37%), Gaps = 65/282 (23%)
Query: 84 SGGHAVIGFYLAKELLGSGHEVTI-----------------MTVGDENSDKMKKPPFNRF 126
+GG +G A LL GH+VTI + GD N + F
Sbjct: 6 TGGAGYVGSVAAAVLLEHGHDVTIIDNFSTGNREAVPADARLIEGDVNDVVEEVLSEGGF 65
Query: 127 NEIVSAGGKTVWGDPAEV------GNVVGGVTFDVVLDNNGKNLDAVRPVADWAKSSGVK 180
+V +++ G+ E NVV +T LDA+R + GV
Sbjct: 66 EGVVHFAARSLVGESVEKPNEYWHDNVVTALTL----------LDAMR-------AHGVN 108
Query: 181 QFLFISSAGIYKPADEPPHVEGDVVKPDAGHVQVEKYISENFSNWA--------SFRPQY 232
+F S+A Y D P E +P + + I +++A S R
Sbjct: 109 NLVFSSTAATYGEPDVVPITEDMPTQPTNAYGATKLSIDYAITSYAAAFGLAATSLRYFN 168
Query: 233 MIGS----GNNKDCEEWFFDRIV------RKRPV------PIPGSGMQFTNIAHVRDLSS 276
+ G+ G N++ E ++ R++ P P G + H+ DL+
Sbjct: 169 VAGAYGNIGENREVETHLIPLVLQVATGHREKTFMFGDDWPTP-DGTAVRDYIHILDLAK 227
Query: 277 MLTLAVENPEAASSNIFNLVSDRAVTLDGMAKLCAQAAGLPV 318
LA+E+ EA IFNL S ++ + ++C + G P+
Sbjct: 228 AHVLALESNEAGKHRIFNLGSGDGYSVKQVVEMCREVTGHPI 269
>sp|P33119|GALE_CORDI UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2
Length = 328
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 111/291 (38%), Gaps = 62/291 (21%)
Query: 84 SGGHAVIGFYLAKELLGSGHEVTI---MTVGDENSDKMKKPPFNRFNEIVSAGGKTVWGD 140
+GG +G + LL GHEVTI +T G+ ++ V G V GD
Sbjct: 6 TGGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDA--------------VPLGATFVEGD 51
Query: 141 PAEVG-NVVGGVTFDVVLDNNGK----------------NLDAVRPVADWAKSSGVKQFL 183
+V NV+ +FD VL + N+ + D K + V+ +
Sbjct: 52 IKDVADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNVRNIV 111
Query: 184 FISSAGIYKPADEPPHVEGDVVKPDAGHVQVEKYISENFSNWA--------SFRPQYMIG 235
F S+A Y + P E P + + I +++A S R + G
Sbjct: 112 FSSTAATYGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYFNVAG 171
Query: 236 S----GNNKDCEEWFFDRIVR-----KRPVPIPG------SGMQFTNIAHVRDLSSMLTL 280
+ G N++ E +++ + + + G G + H+RDL+ L
Sbjct: 172 AYGLVGENREIETHLIPLVLQVALGHRDKIFMFGDDWPTEDGTPIRDYIHIRDLADAHIL 231
Query: 281 AVENPEAASSNIFNLVSDRAVTLDGMAKLCAQAAG--LPVEIVHYDPKAAG 329
A+++ S IFNL S ++ + C + G +P E+ P+ AG
Sbjct: 232 ALQSNVEGSHRIFNLGSGEGYSVKQVIDTCREVTGHLIPAEVA---PRRAG 279
>sp|P55579|Y4NG_RHISN Uncharacterized protein y4nG OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02350 PE=4 SV=1
Length = 396
Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 163 NLDAVRPVADWAKSSGVKQFLFISSAGIYKPADEPPHVEGDVVKPD--------AGHVQV 214
N + + D + ++G+++F++ SS+ ++ P E P AG +
Sbjct: 134 NCGGTQIIVDESVATGIEKFVYTSSSAVFGAPKSNPVTEETEPNPAEDYGRAKLAGEIIC 193
Query: 215 EKYISENFSNWASFRPQYMIGSGNNKDCEEWFFDRIVRKRPVPIPGSGMQFTNIAHVRDL 274
++ + + + A RP+ ++G G + + FD + R +P+ G G H DL
Sbjct: 194 KEAMQRDGLDVAIVRPRTVLGYGR-QGVVQILFDWVERGLDIPVLGGGNNKYQFVHSDDL 252
Query: 275 SSMLTLAVENPEAASSNI 292
+S A A+ NI
Sbjct: 253 ASACIAASNVKGFATYNI 270
>sp|Q493Q1|MURG_BLOPB UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Blochmannia pennsylvanicus (strain BPEN)
GN=murG PE=3 SV=1
Length = 355
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 73 EKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKM 118
+KKK++IV SGGH G +A L+ G++V + D K+
Sbjct: 3 QKKKIMIVAGGSGGHVFPGLSVAHYLINHGYQVVWLGTADRIESKL 48
>sp|B6IRG2|MURG_RHOCS UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=murG PE=3 SV=1
Length = 379
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMT--VGDENSDKMKKPPFNRFNEIVSAGG 134
+++ +GGH LA+ELL GH V ++T G D +++ P +R GG
Sbjct: 6 IVLAAGGTGGHLFPAEALARELLERGHRVVLVTDVRGTAFGDALREVPVHRIRSATLGGG 65
>sp|Q45753|CR5AB_BACUD Pesticidal crystal protein cry5Ab OS=Bacillus thuringiensis subsp.
darmstadiensis GN=cry5Ab PE=1 SV=1
Length = 1289
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 238 NNKDCEEWFFDRIVRKRPVPIPGSGMQFTNIAHVRDLSSM 277
N+ D FF + +PIPGSG FTN ++D+ S+
Sbjct: 726 NSDDALLRFFKTNYDTQTIPIPGSGKDFTNTLEIQDIVSI 765
>sp|P14169|RFBE_SALTI CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2
Length = 338
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 245 WFFDRIVR-----KRPVPIPGSGMQFTNIAHVRDLSSMLTLAVENPEAASSNIFNL 295
WF + V +P I G+G Q ++ H D+ S+ A+ N N FN+
Sbjct: 210 WFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNI 265
>sp|Q8LEU3|NOL_ARATH Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis
thaliana GN=NOL PE=2 SV=1
Length = 348
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 41/176 (23%)
Query: 27 PSLRLSFSSYSHLSSLVSISPSSF---------LACPASSRRS---SVSAFTVKASAAEK 74
P LRL SS S+++ L +SP LA +R++ + S+ V+A + K
Sbjct: 13 PLLRLRSSSVSNVTKLPFLSPICRRRLLAERFGLATVVVTRQNLTVTPSSAAVEARISGK 72
Query: 75 KK-------VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRFN 127
++ +LI + G IG+ LA+E L +G V I + E + + F
Sbjct: 73 REPMTPPYNILITGSTKG----IGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEF- 127
Query: 128 EIVSAGGKTVWG---DPAEVGNVVGGVTF--------DVVLDNNGKNLDAVRPVAD 172
G+ VWG D E +V V + D+ ++N G N + +P+A+
Sbjct: 128 ------GEHVWGTKCDVTEGKDVRELVAYSQKNLKYIDIWINNAGSNAYSFKPLAE 177
>sp|Q2H8T2|AMPP1_CHAGB Probable Xaa-Pro aminopeptidase P OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=AMPP PE=3 SV=1
Length = 624
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 46 SPSSFLACPASSRRSSVSAFTVKASAAEKKKVLIVNTNSGGHAVIGFYL---AKELLGSG 102
S +S P RR+ +S FT A A +V + A G Y K+L G+
Sbjct: 34 SHASEYIAPCDGRRAFISGFTGSAGTA------VVTQDKAALATDGRYFNQAGKQLDGNW 87
Query: 103 HEVTIMTVGDENSDKMKKPPFNRFNEIVSAGGKTVWGDPAEVGNVVGGVTFDVVLDNNGK 162
H ++ G ++ P + + SAGGKTV DP+ + + + + + + G
Sbjct: 88 H---LLKTGLQDV-----PTWQDWTAEASAGGKTVGVDPSLISSPIAEKLDESIKKSGGA 139
Query: 163 NLDAV 167
L AV
Sbjct: 140 GLKAV 144
>sp|Q8DW43|ILVC_STRMU Ketol-acid reductoisomerase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=ilvC PE=3 SV=1
Length = 340
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 67 VKASAAEKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRF 126
VK +A + KK+ ++ S GHA A+ L SGH+V I ++ DK K+ F+ +
Sbjct: 11 VKVAALDGKKIAVIGYGSQGHA-----HAQNLRDSGHDVIIGVRHGKSFDKAKEDGFDTY 65
Query: 127 N 127
Sbjct: 66 E 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,221,126
Number of Sequences: 539616
Number of extensions: 5729878
Number of successful extensions: 15740
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 15587
Number of HSP's gapped (non-prelim): 177
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)