BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018901
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
MNV+ V AE PWSKTGGLGDV G LP A+A GHRVMV++P Y Y + DT + +
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 338 V-DR 340
V DR
Sbjct: 70 VADR 73
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321
MNV+ V++E P KTGGL DV GALP AL G R + P Y
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGY 44
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321
NV+ V++E P KTGGL DV GALP AL G R + P Y
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGY 44
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR 333
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + IR
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIR 57
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR 333
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + IR
Sbjct: 4 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIR 58
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR 333
M V+L+ E P K GGL + A+ +ALA GH V+V P +G + + IR
Sbjct: 3 MKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIR 57
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321
M V+ V +E P KTGGL DV GALP A G V+ P +
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF 44
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321
M V+ V++E P KTGGL DV GALP A G V+ P +
Sbjct: 1 MQVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF 44
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321
M V+ V +E P KTGGL DV GALP A G V+ P +
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF 44
>pdb|4GI5|A Chain A, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
pdb|4GI5|B Chain B, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
Length = 280
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 47 LNNSVSGFSFRS-NKSGHLLKVKHVKA--TGAGFVEDESGNEPEDSLQATIEKSKKVLAM 103
LN ++ F+ R ++GH ++V + A AG+ D+SG P SK+ A
Sbjct: 37 LNGALKNFAIRHLQQAGHEVQVSDLYAXRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQ 96
Query: 104 QKQLLQQISERRKLVSS 120
Q ++E+ KL+ +
Sbjct: 97 GTQSADIVAEQEKLLWA 113
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 197 NRLSPE--KESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQ 254
N PE K +D D++ L G++TQ W+ P+ +T+VIS+ E + D Q
Sbjct: 298 NIYKPEFAKTVLDKDTAGSLTGSNTQYNWN---PT--GKTSVISNGSESLNVDLFDSSQD 352
Query: 255 IDSEPIEPKTEEAKPPPLAGANVM 278
DS+ K K L G+ +
Sbjct: 353 TDSK----KNNHGKSVTLRGSGTL 372
>pdb|1CCW|B Chain B, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CCW|D Chain D, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CB7|B Chain B, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
pdb|1CB7|D Chain D, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
pdb|1I9C|B Chain B, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
pdb|1I9C|D Chain D, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
Length = 483
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 250 DQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALAR 309
+Q I+ EP P T PP ++ A + L+AAE G + T G G+ + A
Sbjct: 206 EQGVHINREPFGPLTGTLVPPSMSNAVGITEALLAAEQGVKNITVGYGECGNMIQDIAAL 265
Query: 310 R 310
R
Sbjct: 266 R 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.126 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,144,787
Number of Sequences: 62578
Number of extensions: 358565
Number of successful extensions: 701
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 21
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)