BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018902
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I0Z|A Chain A, Crystal Structure Of Putative Putative
Tagatose-6-Phosphate KetoseALDOSE ISOMERASE
(NP_344614.1) FROM STREPTOCOCCUS PNEUMONIAE Tigr4 At
1.70 A Resolution
pdb|3I0Z|B Chain B, Crystal Structure Of Putative Putative
Tagatose-6-Phosphate KetoseALDOSE ISOMERASE
(NP_344614.1) FROM STREPTOCOCCUS PNEUMONIAE Tigr4 At
1.70 A Resolution
Length = 389
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 249 KELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQG------ADSSSVSNKTSFLRP 302
+E+A + K+I+ GA ++ Y+ ++P K + DE+ A + V+N ++L+
Sbjct: 48 QEIADKHDYIKVILTGAGTSAYVGDTLLPYFKEVYDERKWNFNAIATTDIVANPATYLKK 107
Query: 303 DSKGTVRAF 311
D + +F
Sbjct: 108 DVATVLVSF 116
>pdb|3R32|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R32|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 282 LIDEQGADSSSVSNKTSFLRPDSKGTVRAFTV 313
++ E+G + SN TSF RP +G VRA V
Sbjct: 83 VVHEKGMMAVGQSNHTSFFRPVKEGHVRAEAV 114
>pdb|1Q4S|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Complexed With Coa And
4-Hydroxybenzoic Acid
pdb|1Q4S|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Complexed With Coa And
4-Hydroxybenzoic Acid
pdb|1Q4T|A Chain A, Crystal Structure Of 4-Hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-Hydroxyphenyl Coa
pdb|1Q4T|B Chain B, Crystal Structure Of 4-Hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-Hydroxyphenyl Coa
pdb|1Q4U|A Chain A, Crystal Structure Of 4-hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-hydroxybenzyl Coa
pdb|1Q4U|B Chain B, Crystal Structure Of 4-hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-hydroxybenzyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 282 LIDEQGADSSSVSNKTSFLRPDSKGTVRAFTV 313
++ E+G + SN TSF RP +G VRA V
Sbjct: 83 VVHEKGMMAVGQSNHTSFFRPVKEGHVRAEAV 114
>pdb|3TEA|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Double Mutant Q58eE73A
COMPLEXED WITH 4-Hydroxyphenacyl Coa
pdb|3TEA|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Double Mutant Q58eE73A
COMPLEXED WITH 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 282 LIDEQGADSSSVSNKTSFLRPDSKGTVRAFTV 313
++ E+G + SN TSF RP +G VRA V
Sbjct: 83 VVHEKGMMAVGQSNHTSFFRPVKEGHVRAEAV 114
>pdb|3R3A|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxybenzoic Acid And Coa
pdb|3R3A|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxybenzoic Acid And Coa
pdb|3R3B|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3B|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 282 LIDEQGADSSSVSNKTSFLRPDSKGTVRAFTV 313
++ E+G + SN TSF RP +G VRA V
Sbjct: 83 VVHEKGMMAVGQSNHTSFFRPVKEGHVRAEAV 114
>pdb|3R3D|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77s Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3D|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77s Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 282 LIDEQGADSSSVSNKTSFLRPDSKGTVRAFTV 313
++ E+G + SN TSF RP +G VRA V
Sbjct: 83 VVHEKGMMAVGQSNHTSFFRPVKEGHVRAEAV 114
>pdb|3R36|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxybenzoic Acid
pdb|3R36|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxybenzoic Acid
pdb|3R37|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R37|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 282 LIDEQGADSSSVSNKTSFLRPDSKGTVRAFTV 313
++ E+G + SN TSF RP +G VRA V
Sbjct: 83 VVHEKGMMAVGQSNHTSFFRPVKEGHVRAEAV 114
>pdb|3R3F|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3F|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 282 LIDEQGADSSSVSNKTSFLRPDSKGTVRAFTV 313
++ E+G + SN TSF RP +G VRA V
Sbjct: 83 VVHEKGMMAVGQSNHTSFFRPVKEGHVRAEAV 114
>pdb|3R3C|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant H64a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3C|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant H64a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 282 LIDEQGADSSSVSNKTSFLRPDSKGTVRAFTV 313
++ E+G + SN TSF RP +G VRA V
Sbjct: 83 VVHEKGMMAVGQSNHTSFFRPVKEGHVRAEAV 114
>pdb|3R34|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With Coa
pdb|3R34|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With Coa
pdb|3R35|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R35|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 282 LIDEQGADSSSVSNKTSFLRPDSKGTVRAFTV 313
++ E+G + SN TSF RP +G VRA V
Sbjct: 83 VVHEKGMMAVGQSNHTSFFRPVKEGHVRAEAV 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,210,689
Number of Sequences: 62578
Number of extensions: 353416
Number of successful extensions: 842
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 11
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)