Query 018902
Match_columns 349
No_of_seqs 237 out of 2086
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07397 MPP_DevT Myxococcus xa 100.0 3.9E-42 8.4E-47 305.4 24.1 237 39-279 1-237 (238)
2 COG2129 Predicted phosphoester 99.9 2.6E-25 5.6E-30 192.2 19.8 207 37-324 2-222 (226)
3 cd07388 MPP_Tt1561 Thermus the 99.9 1.6E-24 3.4E-29 192.4 20.0 187 37-276 3-206 (224)
4 cd07395 MPP_CSTP1 Homo sapiens 99.9 5.8E-21 1.3E-25 175.1 24.2 224 36-324 2-258 (262)
5 cd07392 MPP_PAE1087 Pyrobaculu 99.9 1.1E-21 2.3E-26 170.4 16.9 181 41-274 1-188 (188)
6 PRK11148 cyclic 3',5'-adenosin 99.9 1.8E-20 3.8E-25 173.1 23.2 224 36-325 12-258 (275)
7 cd07402 MPP_GpdQ Enterobacter 99.9 2.3E-20 5E-25 168.7 17.9 188 40-276 1-210 (240)
8 PF14582 Metallophos_3: Metall 99.8 1.8E-20 3.9E-25 161.6 12.6 206 39-324 6-253 (255)
9 TIGR03729 acc_ester putative p 99.8 1.6E-19 3.4E-24 163.4 16.4 208 40-275 1-237 (239)
10 cd07396 MPP_Nbla03831 Homo sap 99.8 6.1E-19 1.3E-23 162.1 20.0 224 39-321 1-264 (267)
11 PRK11340 phosphodiesterase Yae 99.8 3.1E-19 6.8E-24 164.3 16.0 158 36-252 47-216 (271)
12 cd07393 MPP_DR1119 Deinococcus 99.8 3.2E-18 7E-23 154.1 17.4 199 41-275 1-225 (232)
13 TIGR00040 yfcE phosphoesterase 99.8 6.2E-18 1.3E-22 143.3 17.5 61 39-101 1-63 (158)
14 cd00839 MPP_PAPs purple acid p 99.8 5.1E-18 1.1E-22 158.1 18.3 212 36-275 2-236 (294)
15 TIGR00583 mre11 DNA repair pro 99.8 2.2E-17 4.8E-22 158.6 22.8 242 37-344 2-304 (405)
16 PLN02533 probable purple acid 99.8 1.1E-17 2.5E-22 162.7 20.7 206 37-276 138-358 (427)
17 cd07401 MPP_TMEM62_N Homo sapi 99.8 7.8E-18 1.7E-22 153.8 17.6 182 41-251 2-211 (256)
18 cd07379 MPP_239FB Homo sapiens 99.8 4.2E-18 9E-23 140.5 13.9 129 40-274 1-135 (135)
19 cd07378 MPP_ACP5 Homo sapiens 99.8 1.8E-17 3.8E-22 153.2 19.5 244 39-323 1-270 (277)
20 PF12850 Metallophos_2: Calcin 99.8 3.3E-18 7.1E-23 144.0 13.2 59 39-102 1-60 (156)
21 cd07404 MPP_MS158 Microscilla 99.8 1.8E-18 4E-23 147.7 9.8 62 41-102 1-68 (166)
22 cd07385 MPP_YkuE_C Bacillus su 99.8 1.5E-17 3.2E-22 148.7 16.0 158 38-253 1-169 (223)
23 cd07399 MPP_YvnB Bacillus subt 99.8 7.2E-17 1.6E-21 143.5 19.2 144 39-251 1-162 (214)
24 PRK10966 exonuclease subunit S 99.8 4.3E-17 9.3E-22 157.7 19.1 65 39-103 1-88 (407)
25 cd00840 MPP_Mre11_N Mre11 nucl 99.7 2.7E-17 5.8E-22 146.7 15.0 66 40-105 1-92 (223)
26 cd07394 MPP_Vps29 Homo sapiens 99.7 2.9E-16 6.3E-21 135.5 20.5 61 40-102 1-65 (178)
27 PRK09453 phosphodiesterase; Pr 99.7 7.2E-17 1.6E-21 140.0 16.8 64 39-102 1-76 (182)
28 PHA02546 47 endonuclease subun 99.7 3.3E-16 7.2E-21 148.6 19.9 65 39-103 1-90 (340)
29 COG0622 Predicted phosphoester 99.7 3.5E-16 7.5E-21 133.2 17.7 64 38-103 1-66 (172)
30 cd00841 MPP_YfcE Escherichia c 99.7 2E-16 4.3E-21 133.5 15.2 58 40-102 1-59 (155)
31 cd07400 MPP_YydB Bacillus subt 99.7 8.1E-17 1.8E-21 134.1 12.3 60 41-100 1-79 (144)
32 COG0420 SbcD DNA repair exonuc 99.7 2.5E-16 5.3E-21 152.6 15.9 67 39-105 1-91 (390)
33 cd07383 MPP_Dcr2 Saccharomyces 99.7 7.4E-16 1.6E-20 135.5 14.6 63 38-100 2-87 (199)
34 PF00149 Metallophos: Calcineu 99.7 4.4E-16 9.6E-21 131.0 12.5 65 39-103 1-79 (200)
35 TIGR00619 sbcd exonuclease Sbc 99.6 1.7E-15 3.7E-20 137.9 13.4 65 39-103 1-89 (253)
36 cd08163 MPP_Cdc1 Saccharomyces 99.6 1.6E-14 3.5E-19 131.6 17.3 165 62-250 43-228 (257)
37 PTZ00422 glideosome-associated 99.6 8.5E-14 1.9E-18 132.1 22.4 232 37-324 25-312 (394)
38 cd00842 MPP_ASMase acid sphing 99.6 3.4E-14 7.3E-19 132.6 19.4 201 54-283 56-293 (296)
39 COG1409 Icc Predicted phosphoh 99.6 8.1E-14 1.7E-18 129.3 21.6 66 39-104 1-80 (301)
40 COG1768 Predicted phosphohydro 99.6 3E-14 6.6E-19 118.3 14.5 188 39-271 1-215 (230)
41 PRK05340 UDP-2,3-diacylglucosa 99.6 1.8E-13 4E-18 123.9 18.6 64 39-102 1-83 (241)
42 cd07403 MPP_TTHA0053 Thermus t 99.6 3.1E-14 6.7E-19 116.4 11.6 55 42-100 1-56 (129)
43 COG1408 Predicted phosphohydro 99.5 4.6E-14 1E-18 129.9 12.4 70 36-105 42-121 (284)
44 TIGR01854 lipid_A_lpxH UDP-2,3 99.5 1.3E-13 2.8E-18 124.1 14.1 61 42-102 2-81 (231)
45 KOG2679 Purple (tartrate-resis 99.5 1.3E-12 2.9E-17 115.4 18.4 252 31-330 36-316 (336)
46 KOG1378 Purple acid phosphatas 99.4 2.5E-11 5.4E-16 115.8 21.5 210 35-277 144-379 (452)
47 cd08165 MPP_MPPE1 human MPPE1 99.4 3E-12 6.5E-17 108.1 11.9 61 42-102 1-89 (156)
48 cd00845 MPP_UshA_N_like Escher 99.3 2.8E-10 6E-15 103.7 21.2 64 39-103 1-83 (252)
49 cd00838 MPP_superfamily metall 99.3 2.8E-11 6.2E-16 97.4 11.6 59 42-100 1-69 (131)
50 PRK09968 serine/threonine-spec 99.3 1.8E-11 4E-16 109.0 10.5 61 40-102 16-81 (218)
51 cd07424 MPP_PrpA_PrpB PrpA and 99.3 4.3E-11 9.3E-16 105.9 12.4 62 40-103 2-68 (207)
52 cd07398 MPP_YbbF-LpxH Escheric 99.3 3.1E-11 6.6E-16 107.3 10.8 61 42-102 1-82 (217)
53 cd07410 MPP_CpdB_N Escherichia 99.3 1.1E-09 2.4E-14 101.2 21.6 199 39-276 1-247 (277)
54 cd07411 MPP_SoxB_N Thermus the 99.3 2E-09 4.4E-14 98.8 22.9 190 39-276 1-238 (264)
55 cd07386 MPP_DNA_pol_II_small_a 99.3 3.2E-10 6.9E-15 102.8 17.0 62 42-103 2-95 (243)
56 COG2908 Uncharacterized protei 99.3 2.7E-11 5.8E-16 106.5 9.5 60 42-101 1-79 (237)
57 KOG1432 Predicted DNA repair e 99.2 2.2E-09 4.8E-14 98.3 21.0 72 33-104 48-149 (379)
58 PRK04036 DNA polymerase II sma 99.2 1.1E-09 2.4E-14 109.0 20.8 69 35-103 240-344 (504)
59 TIGR03767 P_acnes_RR metalloph 99.2 2.1E-09 4.6E-14 104.0 21.5 72 170-251 322-393 (496)
60 cd07406 MPP_CG11883_N Drosophi 99.2 5.2E-09 1.1E-13 95.7 23.2 185 39-275 1-222 (257)
61 cd07390 MPP_AQ1575 Aquifex aeo 99.2 1.7E-10 3.6E-15 98.8 11.9 61 42-102 2-82 (168)
62 cd07384 MPP_Cdc1_like Saccharo 99.2 1.1E-10 2.4E-15 100.1 10.1 46 57-102 38-100 (171)
63 PRK11439 pphA serine/threonine 99.2 1.5E-10 3.3E-15 103.2 11.3 62 39-102 17-83 (218)
64 cd08166 MPP_Cdc1_like_1 unchar 99.2 2.7E-10 5.9E-15 98.7 12.0 48 56-103 34-94 (195)
65 cd07408 MPP_SA0022_N Staphyloc 99.2 7.3E-09 1.6E-13 94.7 21.8 63 39-102 1-82 (257)
66 cd00844 MPP_Dbr1_N Dbr1 RNA la 99.2 6.8E-10 1.5E-14 101.3 14.6 62 41-102 1-86 (262)
67 cd07423 MPP_PrpE Bacillus subt 99.1 8.1E-10 1.7E-14 99.6 12.8 64 39-102 1-80 (234)
68 cd07409 MPP_CD73_N CD73 ecto-5 99.1 2.1E-08 4.5E-13 93.0 22.5 64 39-103 1-95 (281)
69 TIGR03768 RPA4764 metallophosp 99.1 1.6E-08 3.4E-13 97.2 21.7 80 170-251 331-412 (492)
70 KOG3947 Phosphoesterases [Gene 99.1 4.1E-09 8.8E-14 93.8 14.4 204 36-276 59-281 (305)
71 KOG2310 DNA repair exonuclease 99.1 1.6E-08 3.4E-13 97.4 19.4 42 36-77 11-65 (646)
72 PRK09419 bifunctional 2',3'-cy 99.0 4.3E-08 9.3E-13 107.1 23.3 199 36-276 658-898 (1163)
73 cd07425 MPP_Shelphs Shewanella 99.0 1.5E-09 3.3E-14 96.0 8.9 62 42-103 1-81 (208)
74 cd07391 MPP_PF1019 Pyrococcus 99.0 2.3E-09 5E-14 92.0 9.3 61 42-102 1-88 (172)
75 cd07412 MPP_YhcR_N Bacillus su 99.0 1.3E-07 2.7E-12 88.0 21.0 64 39-103 1-89 (288)
76 cd07405 MPP_UshA_N Escherichia 98.9 4.6E-07 9.9E-12 84.1 23.3 65 39-104 1-89 (285)
77 COG4186 Predicted phosphoester 98.9 4.3E-08 9.3E-13 80.1 12.9 63 40-102 5-86 (186)
78 PRK09558 ushA bifunctional UDP 98.8 7.6E-07 1.7E-11 90.2 22.6 68 36-104 32-123 (551)
79 PRK00166 apaH diadenosine tetr 98.8 1.1E-08 2.3E-13 94.1 6.9 64 39-102 1-69 (275)
80 KOG3770 Acid sphingomyelinase 98.8 1.1E-06 2.3E-11 86.6 19.8 171 54-250 198-404 (577)
81 cd07407 MPP_YHR202W_N Saccharo 98.7 2.7E-06 5.9E-11 78.7 21.3 66 37-103 4-98 (282)
82 cd08164 MPP_Ted1 Saccharomyces 98.7 1.7E-08 3.6E-13 87.4 5.7 42 62-103 42-112 (193)
83 PRK09419 bifunctional 2',3'-cy 98.7 1.9E-06 4.1E-11 94.4 23.0 184 37-251 40-281 (1163)
84 PHA02239 putative protein phos 98.7 3.9E-08 8.4E-13 88.5 6.7 64 39-102 1-73 (235)
85 COG1311 HYS2 Archaeal DNA poly 98.6 3.9E-07 8.5E-12 87.6 12.5 73 31-103 218-322 (481)
86 cd07380 MPP_CWF19_N Schizosacc 98.6 1.5E-07 3.3E-12 78.5 8.6 59 42-100 1-68 (150)
87 cd07382 MPP_DR1281 Deinococcus 98.6 1.5E-05 3.4E-10 72.4 21.7 63 40-103 1-71 (255)
88 PRK09418 bifunctional 2',3'-cy 98.6 1.5E-05 3.3E-10 83.0 23.1 67 36-103 37-143 (780)
89 cd08162 MPP_PhoA_N Synechococc 98.6 3.7E-06 8E-11 79.0 17.1 65 39-104 1-93 (313)
90 COG0737 UshA 5'-nucleotidase/2 98.6 5.8E-06 1.3E-10 83.2 19.2 204 34-276 22-268 (517)
91 KOG3662 Cell division control 98.5 4.5E-07 9.8E-12 86.2 10.3 72 36-107 46-149 (410)
92 PRK11907 bifunctional 2',3'-cy 98.5 2.3E-05 5.1E-10 81.8 22.5 66 38-104 115-215 (814)
93 TIGR00024 SbcD_rel_arch putati 98.5 1.9E-07 4.1E-12 83.5 6.3 63 40-102 16-102 (225)
94 TIGR00668 apaH bis(5'-nucleosy 98.5 1.9E-07 4.1E-12 85.3 6.3 64 39-102 1-69 (279)
95 cd07422 MPP_ApaH Escherichia c 98.5 2.4E-07 5.3E-12 84.3 6.5 62 41-102 1-67 (257)
96 KOG3325 Membrane coat complex 98.4 4.2E-05 9E-10 62.2 17.6 78 219-330 93-170 (183)
97 TIGR01390 CycNucDiestase 2',3' 98.4 3.7E-05 8E-10 78.9 21.9 65 38-103 2-100 (626)
98 PRK13625 bis(5'-nucleosyl)-tet 98.4 3.6E-07 7.8E-12 82.9 5.9 64 39-102 1-79 (245)
99 PRK09420 cpdB bifunctional 2', 98.4 6.1E-05 1.3E-09 77.5 22.0 66 37-103 24-123 (649)
100 TIGR00282 metallophosphoestera 98.4 2.2E-05 4.7E-10 71.7 15.9 185 39-273 1-197 (266)
101 TIGR01530 nadN NAD pyrophospha 98.3 3.4E-05 7.3E-10 78.1 18.4 65 39-104 1-96 (550)
102 cd07413 MPP_PA3087 Pseudomonas 98.3 1E-06 2.3E-11 78.7 5.9 61 42-102 2-76 (222)
103 cd00144 MPP_PPP_family phospho 98.3 1.2E-06 2.5E-11 78.3 5.6 62 42-103 1-69 (225)
104 cd07421 MPP_Rhilphs Rhilph pho 98.2 2.7E-06 5.7E-11 78.1 6.2 64 40-103 3-81 (304)
105 KOG2863 RNA lariat debranching 98.0 2.4E-05 5.3E-10 72.4 9.3 64 39-102 1-88 (456)
106 COG1407 Predicted ICC-like pho 98.0 1.4E-05 3E-10 70.9 6.5 62 39-102 20-110 (235)
107 smart00156 PP2Ac Protein phosp 97.7 6.7E-05 1.4E-09 69.1 5.5 66 39-104 28-101 (271)
108 cd07416 MPP_PP2B PP2B, metallo 97.6 0.00011 2.3E-09 68.8 6.5 63 40-102 44-114 (305)
109 cd07387 MPP_PolD2_C PolD2 (DNA 97.6 0.0034 7.3E-08 57.2 15.3 65 40-104 1-109 (257)
110 cd07420 MPP_RdgC Drosophila me 97.5 0.00016 3.5E-09 67.8 6.1 65 40-104 52-125 (321)
111 PHA03008 hypothetical protein; 97.5 0.0016 3.5E-08 55.4 11.1 61 188-275 162-222 (234)
112 cd07414 MPP_PP1_PPKL PP1, PPKL 97.4 0.00022 4.7E-09 66.4 5.8 64 40-103 51-122 (293)
113 cd07415 MPP_PP2A_PP4_PP6 PP2A, 97.4 0.00015 3.3E-09 67.1 4.7 64 40-103 43-114 (285)
114 PTZ00244 serine/threonine-prot 97.4 0.00014 3E-09 67.6 3.9 64 41-104 54-125 (294)
115 PTZ00480 serine/threonine-prot 97.3 0.00038 8.2E-09 65.3 6.1 64 40-103 60-131 (320)
116 PTZ00239 serine/threonine prot 97.3 0.00036 7.8E-09 65.1 5.9 64 40-103 44-115 (303)
117 smart00854 PGA_cap Bacterial c 97.3 0.019 4.2E-07 51.8 16.6 26 79-104 63-88 (239)
118 cd07418 MPP_PP7 PP7, metalloph 97.3 0.00027 5.9E-09 67.5 4.7 66 40-105 67-141 (377)
119 cd07381 MPP_CapA CapA and rela 97.3 0.025 5.4E-07 51.0 17.0 26 79-104 67-92 (239)
120 cd07417 MPP_PP5_C PP5, C-termi 97.2 0.00047 1E-08 64.8 5.6 65 39-103 60-133 (316)
121 PF09423 PhoD: PhoD-like phosp 97.2 0.0076 1.7E-07 59.7 13.4 211 32-251 99-378 (453)
122 cd07419 MPP_Bsu1_C Arabidopsis 97.2 0.00088 1.9E-08 62.9 6.4 64 40-103 49-128 (311)
123 COG1692 Calcineurin-like phosp 97.0 0.044 9.5E-07 48.8 14.6 64 39-103 1-72 (266)
124 PF09587 PGA_cap: Bacterial ca 96.8 0.11 2.5E-06 47.0 17.3 154 78-260 64-234 (250)
125 PF04042 DNA_pol_E_B: DNA poly 95.9 0.011 2.3E-07 52.2 4.6 64 41-104 1-93 (209)
126 KOG4419 5' nucleotidase [Nucle 95.0 0.78 1.7E-05 46.0 14.4 66 38-104 42-136 (602)
127 KOG0374 Serine/threonine speci 94.9 0.021 4.5E-07 54.0 3.1 66 40-105 60-134 (331)
128 KOG0372 Serine/threonine speci 94.8 0.038 8.3E-07 49.1 4.2 63 41-105 45-117 (303)
129 PF13277 YmdB: YmdB-like prote 93.9 3.2 7E-05 37.5 14.6 221 42-325 1-250 (253)
130 KOG0371 Serine/threonine prote 93.3 0.13 2.8E-06 46.2 4.6 80 40-124 61-149 (319)
131 KOG0373 Serine/threonine speci 92.7 0.22 4.7E-06 43.7 5.0 63 41-104 48-119 (306)
132 KOG0375 Serine-threonine phosp 92.5 0.14 3.1E-06 48.0 3.8 76 29-106 78-163 (517)
133 PTZ00235 DNA polymerase epsilo 90.4 1.1 2.5E-05 41.2 7.4 67 38-104 27-124 (291)
134 COG5555 Cytolysin, a secreted 88.6 0.97 2.1E-05 41.4 5.4 65 183-250 266-334 (392)
135 COG3540 PhoD Phosphodiesterase 86.4 16 0.00035 36.1 12.6 77 171-250 340-418 (522)
136 PRK01395 V-type ATP synthase s 80.5 2.4 5.2E-05 33.0 3.7 64 38-102 3-84 (104)
137 KOG2476 Uncharacterized conser 77.4 7.2 0.00016 38.2 6.6 63 38-100 5-76 (528)
138 KOG3818 DNA polymerase epsilon 72.3 10 0.00022 37.0 6.1 68 39-106 283-373 (525)
139 PRK02228 V-type ATP synthase s 70.4 8.1 0.00018 29.7 4.3 37 61-97 41-79 (100)
140 COG2248 Predicted hydrolase (m 63.8 11 0.00023 34.2 4.1 39 36-75 174-212 (304)
141 cd07389 MPP_PhoD Bacillus subt 62.5 18 0.0004 31.8 5.6 31 220-250 174-204 (228)
142 PF06874 FBPase_2: Firmicute f 62.3 6.1 0.00013 40.2 2.7 46 57-103 177-225 (640)
143 cd01141 TroA_d Periplasmic bin 60.9 19 0.0004 30.6 5.2 41 56-98 61-101 (186)
144 cd02067 B12-binding B12 bindin 60.1 48 0.001 25.9 7.1 61 38-101 27-92 (119)
145 PRK01018 50S ribosomal protein 50.2 38 0.00082 25.9 4.8 47 54-100 22-69 (99)
146 PF10686 DUF2493: Protein of u 48.5 98 0.0021 22.1 7.1 62 37-98 2-66 (71)
147 PRK13600 putative ribosomal pr 47.6 53 0.0011 24.5 5.0 43 54-96 19-62 (84)
148 COG3855 Fbp Uncharacterized pr 46.8 16 0.00034 35.9 2.6 51 58-109 184-237 (648)
149 KOG0377 Protein serine/threoni 46.3 3.9 8.4E-05 39.7 -1.5 63 40-102 166-237 (631)
150 KOG0376 Serine-threonine phosp 44.4 16 0.00035 36.0 2.3 68 36-103 211-287 (476)
151 TIGR01012 Sa_S2_E_A ribosomal 44.0 40 0.00087 29.4 4.5 38 63-102 107-158 (196)
152 cd06309 PBP1_YtfQ_like Peripla 43.9 69 0.0015 28.6 6.4 59 37-96 28-87 (273)
153 PRK13602 putative ribosomal pr 43.7 52 0.0011 24.3 4.5 47 54-100 17-64 (82)
154 cd01149 HutB Hemin binding pro 43.3 39 0.00085 29.8 4.6 39 56-96 50-88 (235)
155 COG1911 RPL30 Ribosomal protei 42.7 71 0.0015 24.4 5.0 47 54-100 25-72 (100)
156 TIGR01768 GGGP-family geranylg 42.5 53 0.0011 29.3 5.1 49 54-102 17-68 (223)
157 cd01139 TroA_f Periplasmic bin 41.1 44 0.00096 31.4 4.8 41 56-96 83-125 (342)
158 COG1358 RPL8A Ribosomal protei 41.1 59 0.0013 25.8 4.6 47 54-100 33-81 (116)
159 PTZ00106 60S ribosomal protein 39.6 72 0.0016 24.9 4.9 47 54-100 31-78 (108)
160 PRK10957 iron-enterobactin tra 39.4 57 0.0012 30.3 5.2 41 56-97 105-145 (317)
161 cd06323 PBP1_ribose_binding Pe 38.6 73 0.0016 28.1 5.6 61 38-98 29-89 (268)
162 PF13941 MutL: MutL protein 38.6 39 0.00085 33.5 4.0 47 54-101 114-166 (457)
163 COG1609 PurR Transcriptional r 38.2 3.4E+02 0.0075 25.4 16.5 45 54-100 104-148 (333)
164 PRK06683 hypothetical protein; 37.7 76 0.0016 23.4 4.5 43 54-96 17-60 (82)
165 PF00072 Response_reg: Respons 37.2 61 0.0013 24.2 4.3 47 54-100 33-82 (112)
166 cd06308 PBP1_sensor_kinase_lik 37.2 99 0.0022 27.4 6.3 57 38-95 30-87 (270)
167 PRK04169 geranylgeranylglycery 36.6 88 0.0019 28.1 5.6 62 40-102 9-73 (232)
168 cd06319 PBP1_ABC_sugar_binding 36.0 98 0.0021 27.5 6.1 58 38-95 29-86 (277)
169 COG2201 CheB Chemotaxis respon 36.0 1.1E+02 0.0024 29.2 6.5 60 38-97 1-82 (350)
170 PRK14048 ferrichrome/ferrioxam 35.3 85 0.0018 30.0 5.8 42 57-98 114-157 (374)
171 cd01575 PBP1_GntR Ligand-bindi 34.9 1.9E+02 0.004 25.4 7.7 58 38-99 29-87 (268)
172 cd01143 YvrC Periplasmic bindi 34.7 63 0.0014 27.2 4.3 38 56-96 52-89 (195)
173 PRK13601 putative L7Ae-like ri 34.4 87 0.0019 23.1 4.4 40 54-93 14-54 (82)
174 PF07819 PGAP1: PGAP1-like pro 34.0 1.2E+02 0.0025 26.9 6.0 13 89-101 4-16 (225)
175 COG5214 POL12 DNA polymerase a 34.0 2.5E+02 0.0055 27.5 8.3 67 36-102 302-397 (581)
176 TIGR01769 GGGP geranylgeranylg 33.0 1.2E+02 0.0025 26.8 5.7 48 55-102 15-66 (205)
177 TIGR01319 glmL_fam conserved h 32.8 48 0.001 32.9 3.5 47 54-101 110-162 (463)
178 cd01542 PBP1_TreR_like Ligand- 32.3 1.6E+02 0.0034 25.7 6.8 55 38-95 29-84 (259)
179 PRK05583 ribosomal protein L7A 31.9 1.2E+02 0.0026 23.5 5.0 46 54-100 23-69 (104)
180 cd06292 PBP1_LacI_like_10 Liga 31.6 1.7E+02 0.0036 25.9 6.8 59 38-97 29-91 (273)
181 COG2843 PgsA Putative enzyme o 30.7 2.4E+02 0.0051 27.3 7.7 56 175-250 212-268 (372)
182 cd06273 PBP1_GntR_like_1 This 30.5 1.7E+02 0.0038 25.7 6.7 57 37-95 28-84 (268)
183 COG1646 Predicted phosphate-bi 30.3 97 0.0021 27.8 4.7 49 54-102 31-83 (240)
184 PRK07714 hypothetical protein; 30.2 1.2E+02 0.0027 23.0 4.8 42 54-95 24-66 (100)
185 PF02421 FeoB_N: Ferrous iron 30.2 45 0.00099 27.9 2.6 45 57-101 71-117 (156)
186 cd06301 PBP1_rhizopine_binding 29.3 1.6E+02 0.0035 25.9 6.4 60 38-99 30-90 (272)
187 TIGR03677 rpl7ae 50S ribosomal 28.9 1.4E+02 0.0031 23.5 5.1 43 54-96 32-76 (117)
188 PF01248 Ribosomal_L7Ae: Ribos 28.0 1.2E+02 0.0025 22.6 4.3 43 54-96 21-65 (95)
189 cd02068 radical_SAM_B12_BD B12 27.6 1.4E+02 0.0031 23.4 5.0 55 46-100 20-77 (127)
190 TIGR03659 IsdE heme ABC transp 27.4 1.1E+02 0.0024 28.0 4.9 38 56-96 83-120 (289)
191 cd06317 PBP1_ABC_sugar_binding 27.2 1.7E+02 0.0038 25.7 6.2 57 38-95 30-87 (275)
192 cd01538 PBP1_ABC_xylose_bindin 27.2 1.6E+02 0.0035 26.6 5.9 44 54-97 45-88 (288)
193 PRK03379 vitamin B12-transport 27.0 1.2E+02 0.0026 27.3 5.0 39 56-96 64-102 (260)
194 cd06298 PBP1_CcpA_like Ligand- 26.9 2.1E+02 0.0046 25.1 6.6 55 38-95 29-84 (268)
195 cd02071 MM_CoA_mut_B12_BD meth 26.7 2.4E+02 0.0052 22.1 6.2 46 53-98 39-89 (122)
196 cd06311 PBP1_ABC_sugar_binding 26.6 1.7E+02 0.0037 25.9 6.0 57 38-95 34-91 (274)
197 PRK04020 rps2P 30S ribosomal p 26.5 1.2E+02 0.0026 26.7 4.6 36 64-101 114-163 (204)
198 cd06299 PBP1_LacI_like_13 Liga 26.2 2.3E+02 0.0049 24.8 6.7 57 37-95 28-84 (265)
199 cd06285 PBP1_LacI_like_7 Ligan 26.2 2.2E+02 0.0048 25.0 6.6 40 54-95 45-84 (265)
200 cd06295 PBP1_CelR Ligand bindi 26.1 2.2E+02 0.0048 25.2 6.6 53 38-95 40-93 (275)
201 cd01540 PBP1_arabinose_binding 25.8 1.4E+02 0.003 26.8 5.2 57 38-95 29-85 (289)
202 cd01537 PBP1_Repressors_Sugar_ 25.4 2.3E+02 0.005 24.4 6.5 61 38-100 29-90 (264)
203 cd06305 PBP1_methylthioribose_ 25.2 2E+02 0.0042 25.4 6.1 59 38-97 29-88 (273)
204 PRK09534 btuF corrinoid ABC tr 25.2 1.2E+02 0.0027 28.9 4.9 37 57-96 112-148 (359)
205 TIGR03868 F420-O_ABCperi propo 25.2 72 0.0016 29.0 3.2 41 56-96 70-112 (287)
206 PF01497 Peripla_BP_2: Peripla 25.2 1.1E+02 0.0023 26.7 4.2 41 58-100 54-94 (238)
207 PTZ00254 40S ribosomal protein 24.9 1.2E+02 0.0026 27.5 4.4 37 64-102 118-168 (249)
208 cd06289 PBP1_MalI_like Ligand- 24.6 2.7E+02 0.0059 24.3 6.9 61 38-100 29-90 (268)
209 cd06282 PBP1_GntR_like_2 Ligan 24.6 2.5E+02 0.0054 24.5 6.6 59 37-96 28-86 (266)
210 TIGR00215 lpxB lipid-A-disacch 24.4 1.7E+02 0.0038 28.1 5.9 39 56-95 81-119 (385)
211 cd06302 PBP1_LsrB_Quorum_Sensi 24.2 1.9E+02 0.0041 26.3 5.9 59 37-95 28-87 (298)
212 KOG1625 DNA polymerase alpha-p 24.2 1.9E+02 0.0042 29.3 6.0 64 41-104 343-433 (600)
213 PF01884 PcrB: PcrB family; I 24.1 1.2E+02 0.0026 27.2 4.3 61 41-102 10-72 (230)
214 PF03437 BtpA: BtpA family; I 23.9 2.6E+02 0.0057 25.4 6.5 57 41-97 141-208 (254)
215 cd06322 PBP1_ABC_sugar_binding 23.8 2.1E+02 0.0046 25.1 6.0 57 38-95 29-86 (267)
216 TIGR02634 xylF D-xylose ABC tr 23.5 1.8E+02 0.0039 26.6 5.6 57 38-95 28-85 (302)
217 PRK11475 DNA-binding transcrip 23.4 1.9E+02 0.0042 25.2 5.4 45 54-100 27-79 (207)
218 cd01147 HemV-2 Metal binding p 23.3 1.4E+02 0.003 26.5 4.7 39 56-96 66-105 (262)
219 cd06267 PBP1_LacI_sugar_bindin 23.3 2E+02 0.0044 24.8 5.7 58 38-97 29-86 (264)
220 PF13407 Peripla_BP_4: Peripla 23.1 2.1E+02 0.0045 25.1 5.8 57 39-95 29-86 (257)
221 COG3207 DIT1 Pyoverdine/dityro 23.0 99 0.0022 28.3 3.4 39 36-74 103-156 (330)
222 cd06314 PBP1_tmGBP Periplasmic 22.8 2.5E+02 0.0054 24.8 6.3 58 38-96 28-86 (271)
223 cd06318 PBP1_ABC_sugar_binding 22.4 1.9E+02 0.0041 25.7 5.4 42 54-95 45-86 (282)
224 cd06300 PBP1_ABC_sugar_binding 22.4 2E+02 0.0043 25.4 5.5 54 43-96 38-92 (272)
225 PF13258 DUF4049: Domain of un 22.1 1.2E+02 0.0025 27.3 3.7 18 88-105 126-143 (318)
226 TIGR01465 cobM_cbiF precorrin- 22.0 1.9E+02 0.0042 25.3 5.3 31 67-97 75-107 (229)
227 TIGR03413 GSH_gloB hydroxyacyl 21.7 97 0.0021 27.8 3.3 37 66-103 119-168 (248)
228 cd06283 PBP1_RegR_EndR_KdgR_li 21.5 3E+02 0.0065 24.0 6.5 58 38-97 29-86 (267)
229 cd02812 PcrB_like PcrB_like pr 21.3 3.2E+02 0.0069 24.3 6.4 48 55-102 16-67 (219)
230 PRK00025 lpxB lipid-A-disaccha 21.1 2.3E+02 0.0051 26.7 6.0 45 56-101 77-121 (380)
231 cd02991 UAS_ETEA UAS family, E 21.0 3.2E+02 0.007 21.4 5.8 57 37-96 18-83 (116)
232 PRK11303 DNA-binding transcrip 20.8 3.2E+02 0.007 25.0 6.8 40 55-95 108-147 (328)
233 cd01539 PBP1_GGBP Periplasmic 20.8 2.2E+02 0.0048 25.9 5.6 57 38-95 31-88 (303)
234 TIGR01469 cobA_cysG_Cterm urop 20.6 2.3E+02 0.005 24.9 5.5 31 67-97 81-113 (236)
235 PRK10703 DNA-binding transcrip 20.5 3.2E+02 0.0068 25.2 6.7 40 54-95 105-145 (341)
236 PF08497 Radical_SAM_N: Radica 20.4 84 0.0018 29.2 2.5 13 63-75 15-27 (302)
237 PF02684 LpxB: Lipid-A-disacch 20.2 2.2E+02 0.0049 27.5 5.6 42 54-96 72-116 (373)
238 cd06281 PBP1_LacI_like_5 Ligan 20.2 3.6E+02 0.0079 23.7 6.8 41 54-95 45-85 (269)
No 1
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=100.00 E-value=3.9e-42 Score=305.37 Aligned_cols=237 Identities=59% Similarity=0.998 Sum_probs=210.9
Q ss_pred cEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCCCccccccccchhHHHHH
Q 018902 39 VRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQ 118 (349)
Q Consensus 39 mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~ 118 (349)
+||+++||+|.++.. ...+.++..+||+|+++||++++..++++.+.+++.|+++|+||||++..... ......++..
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~~~~~~~~l~~l~~p~~~V~GNHD~~~~~~~-~~k~~~l~~~ 78 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNESVQLVRAISSLPLPKAVILGNHDAWYDATF-RKKGDRVQEQ 78 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcChHHHHHHHHhCCCCeEEEcCCCcccccccc-cchHHHHHHH
Confidence 589999999998775 34567778899999999999999889999999988999999999998764321 1134458888
Q ss_pred HHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCC
Q 018902 119 LECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPS 198 (349)
Q Consensus 119 l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~ 198 (349)
++.+++.++.+..++++...+.++|++||.++|..|......+..|+..++++...++.+.++..+++..+|+++|.+|.
T Consensus 79 L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~VliaH~~~~ 158 (238)
T cd07397 79 LELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLILLAHNGPS 158 (238)
T ss_pred HHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEEEeCcCCc
Confidence 99999999999888998889999999999999999888777888899999999999999988777778889999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccce
Q 018902 199 GLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPR 278 (349)
Q Consensus 199 ~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr 278 (349)
+.|+++.++||+||...+++||+++|++++.++.. +..+++|+|||+|+.++++.+.++++..+.+||+|+|++++||
T Consensus 159 G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~--~~~~~l~~fGH~H~~l~~~~~~r~~~~~~~~gt~y~N~a~~pr 236 (238)
T cd07397 159 GLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQ--GRQVPLVVFGHMHHRLRRGKGLRNMIAVDREGTVYLNAASVPR 236 (238)
T ss_pred CCCcccccccccccCCcCCCCCCHHHHHHHHHHhc--cCCCCEEEeCCccCcccccccccceeeecCCCeEEEecccccc
Confidence 99999999999999999999999999999998764 4579999999999999999889999999999999999999999
Q ss_pred e
Q 018902 279 V 279 (349)
Q Consensus 279 ~ 279 (349)
+
T Consensus 237 ~ 237 (238)
T cd07397 237 I 237 (238)
T ss_pred C
Confidence 6
No 2
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=192.23 Aligned_cols=207 Identities=24% Similarity=0.333 Sum_probs=145.6
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCC--CC-----cHHH--HHHHHcCCCCEEEEcCCCCCCcccc
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFG--NE-----NVEI--VQSVAELEFPKAVILGNHDSWKTQE 106 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~--~~-----~~~~--l~~l~~l~~Pi~~V~GNHD~~~~~~ 106 (349)
.+||++.++|+|+.... +++...+...++|+++++|||+ +. ..+. ++.+....+|++++|||.|...
T Consensus 2 ~~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD~~~--- 78 (226)
T COG2129 2 KKMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCDPPE--- 78 (226)
T ss_pred CcceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCChHH---
Confidence 46999999999999764 5666666667999999999999 42 1222 5677777999999999999753
Q ss_pred ccccchhHHHHHHHHhCCcceeeEEeecCCceEEEeCC---eeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCC
Q 018902 107 FSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKLSIVGG---RPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGT 183 (349)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 183 (349)
....++..+..-.. +..+..++.+.++|+ +||++... ++++++...+.++.+...+
T Consensus 79 --------v~~~l~~~~~~v~~-~v~~i~~~~~~G~Ggsn~tp~nt~~e-----------~~E~~I~s~l~~~v~~~~~- 137 (226)
T COG2129 79 --------VIDVLKNAGVNVHG-RVVEIGGYGFVGFGGSNPTPFNTPRE-----------FSEDEIYSKLKSLVKKADN- 137 (226)
T ss_pred --------HHHHHHhccccccc-ceEEecCcEEEEecccCCCCCCCccc-----------cCHHHHHHHHHHHHhcccC-
Confidence 23334443322222 566777788887776 44544332 5555555444444443321
Q ss_pred CCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEE
Q 018902 184 PDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDH-GDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIV 262 (349)
Q Consensus 184 ~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~-G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~ 262 (349)
..+|+++|+||+++..+ .+.+..| || +++++++++. +|.+++|||+|++ +|++++
T Consensus 138 ---~~~Il~~HaPP~gt~~d---------~~~g~~hvGS----~~vr~~ieef--qP~l~i~GHIHEs----~G~d~i-- 193 (226)
T COG2129 138 ---PVNILLTHAPPYGTLLD---------TPSGYVHVGS----KAVRKLIEEF--QPLLGLHGHIHES----RGIDKI-- 193 (226)
T ss_pred ---cceEEEecCCCCCcccc---------CCCCccccch----HHHHHHHHHh--CCceEEEeeeccc----cccccc--
Confidence 12399999999998433 2223256 99 6777787744 5999999999998 899998
Q ss_pred EcCCceEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEE
Q 018902 263 VGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKI 324 (349)
Q Consensus 263 ~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~ 324 (349)
|+|+++|||.. ....|+++++++..|..+
T Consensus 194 ---G~TivVNPG~~------------------------------~~g~yA~i~l~~~~Vk~~ 222 (226)
T COG2129 194 ---GNTIVVNPGPL------------------------------GEGRYALIELEKEVVKLE 222 (226)
T ss_pred ---CCeEEECCCCc------------------------------cCceEEEEEecCcEEEEE
Confidence 99999999983 125799999998866554
No 3
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.93 E-value=1.6e-24 Score=192.44 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=116.9
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc------HHHHHHHHcCCCCEEEEcCCCCCCccccccc
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN------VEIVQSVAELEFPKAVILGNHDSWKTQEFSG 109 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~------~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~ 109 (349)
+.+||+++||+|.+... +++++.+++.++|+||++||+++.. .++++.+.+++.|+++|+||||.. ...
T Consensus 3 ~~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~~-v~~--- 78 (224)
T cd07388 3 TVRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDAP-LWE--- 78 (224)
T ss_pred ceeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCChH-HHH---
Confidence 46899999999998664 5566666667999999999999853 456777877789999999999963 110
Q ss_pred cchhHHHHHHHH----hCCcceeeEEeecCC-ceEEEeCCeeeecCCchhhhhhhhhhccCCcch----HHHHHHHHHHH
Q 018902 110 KKKDGVQLQLEC----LGEEHVAYRRLDFPT-LKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDM----DESAKRIYKVA 180 (349)
Q Consensus 110 ~~~~~~~~~l~~----~~~~~~~~~~l~~~~-~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l 180 (349)
.+...+.. .....+.-......+ +.+.++||.+.. .. .+++++. .+..+.+.+.+
T Consensus 79 ----~l~~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~-~~-----------e~sE~e~~~~~~~~~~~~l~~~ 142 (224)
T cd07388 79 ----YLREAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIAD-EG-----------EPEEHEALRYPAWVAEYRLKAL 142 (224)
T ss_pred ----HHHHHhcccccCccceecCCCeEEecCCeEEEEecCCcCC-CC-----------CcCHHHHhhhhhhHHHHHHHHH
Confidence 11111100 000001011122223 567777764311 10 1222221 01113333444
Q ss_pred hCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceE
Q 018902 181 LGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDH-GDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRK 259 (349)
Q Consensus 181 ~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~-G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~ 259 (349)
.+. ..++.||++|+||++++. .| |+ ++++++++ +++|.+++|||+|+. ..+
T Consensus 143 ~~~-~~~~~VLv~H~PP~g~g~---------------~h~GS----~alr~~I~--~~~P~l~i~GHih~~------~~~ 194 (224)
T cd07388 143 WEL-KDYRKVFLFHTPPYHKGL---------------NEQGS----HEVAHLIK--THNPLVVLVGGKGQK------HEL 194 (224)
T ss_pred HhC-CCCCeEEEECCCCCCCCC---------------CccCH----HHHHHHHH--HhCCCEEEEcCCcee------EEE
Confidence 443 356799999999998731 24 77 56666776 446999999999933 345
Q ss_pred EEEEcCCceEEEeeccc
Q 018902 260 MIVVGADSTIYLNGAIV 276 (349)
Q Consensus 260 ~~~~~~~gt~yvn~g~~ 276 (349)
+ ++|+++|+|+.
T Consensus 195 ~-----g~t~vvNpg~~ 206 (224)
T cd07388 195 L-----GASWVVVPGDL 206 (224)
T ss_pred e-----CCEEEECCCcc
Confidence 6 89999999973
No 4
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.89 E-value=5.8e-21 Score=175.09 Aligned_cols=224 Identities=14% Similarity=0.151 Sum_probs=136.9
Q ss_pred CCccEEEEEeCCCCCcC-----------------hHHHHHHhhCC--CCCEEEEcCCCCCCc----------HHHHHHHH
Q 018902 36 ASVVRIVIVGDVHDDWD-----------------LQEDSKALQLL--KPDLVLFTGDFGNEN----------VEIVQSVA 86 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~-----------------~~~~~~~i~~~--~pD~vI~~GDl~~~~----------~~~l~~l~ 86 (349)
+.+++|+++||+|.+.. .+..++.+++. +||+||++|||++.. ..+.+.+.
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 35799999999999842 13455667666 999999999999742 12344455
Q ss_pred cC--CCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhcc
Q 018902 87 EL--EFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRY 164 (349)
Q Consensus 87 ~l--~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~ 164 (349)
++ ++|+++++||||...... ...+......++..++.+ ..+++.+.++++..+...+. .
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~-----~~~~~~f~~~~g~~~y~~---~~~~~~~i~lds~~~~~~~~-----------~ 142 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPT-----EESIKDYRDVFGDDYFSF---WVGGVFFIVLNSQLFFDPSE-----------V 142 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCC-----hhHHHHHHHHhCCcceEE---EECCEEEEEeccccccCccc-----------c
Confidence 54 689999999999853211 112333334455443332 23556666665532211100 1
Q ss_pred CCcchHHHHHHHHHHHhCCC--CCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEE
Q 018902 165 GVQDMDESAKRIYKVALGTP--DDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLV 242 (349)
Q Consensus 165 ~~~~~~~~~~~l~~~l~~~~--~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lv 242 (349)
+ ....++++|+.+.+++.. ..+++|+++|+||+..+... .++.. ....+.+..+.++++ +++++++
T Consensus 143 ~-~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~-----~~~~~----~~~~~~~~~l~~ll~--~~~V~~v 210 (262)
T cd07395 143 P-ELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDE-----EDSYF----NIPKSVRKPLLDKFK--KAGVKAV 210 (262)
T ss_pred c-cchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCC-----CcccC----CcCHHHHHHHHHHHH--hcCceEE
Confidence 1 123456788888887764 55789999999986432110 00000 012455677888888 5689999
Q ss_pred EeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEe
Q 018902 243 VFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRID 322 (349)
Q Consensus 243 l~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~ 322 (349)
+|||+|.... ... +|+.|+.+++.-... .....+|.++++++++++
T Consensus 211 ~~GH~H~~~~-----~~~-----~g~~~~~~~~~~~~~------------------------~~~~~g~~~~~v~~~~~~ 256 (262)
T cd07395 211 FSGHYHRNAG-----GRY-----GGLEMVVTSAIGAQL------------------------GNDKSGLRIVKVTEDKIV 256 (262)
T ss_pred EECccccCCc-----eEE-----CCEEEEEcCceeccc------------------------CCCCCCcEEEEECCCcee
Confidence 9999998731 122 466666555431100 134578999999988885
Q ss_pred EE
Q 018902 323 KI 324 (349)
Q Consensus 323 ~~ 324 (349)
.+
T Consensus 257 ~~ 258 (262)
T cd07395 257 HE 258 (262)
T ss_pred ee
Confidence 54
No 5
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.88 E-value=1.1e-21 Score=170.42 Aligned_cols=181 Identities=22% Similarity=0.269 Sum_probs=105.2
Q ss_pred EEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCc----HHHHHHHHcCCCCEEEEcCCCCCCccccccccchhHHH
Q 018902 41 IVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNEN----VEIVQSVAELEFPKAVILGNHDSWKTQEFSGKKKDGVQ 116 (349)
Q Consensus 41 il~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~----~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~ 116 (349)
|+++||+|++...... ..++..++|+||++||+++.. .+.++.+.+++.|+++|+||||.....
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~~~~~----------- 68 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNFGGKEAAVEINLLLAIGVPVLAVPGNCDTPEIL----------- 68 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCcCCHHHHHHHHHHHhcCCCEEEEcCCCCCHHHH-----------
Confidence 6899999998654222 456678999999999999853 234477777889999999999964321
Q ss_pred HHHHHhCCcceeeEEeecCCceEEEeCCee---eecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEe
Q 018902 117 LQLECLGEEHVAYRRLDFPTLKLSIVGGRP---FSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLA 193 (349)
Q Consensus 117 ~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~ 193 (349)
..+. .+...........+++.+.++++.. ++..+ .+..++ +.++ +.+ ...+.+++|+++
T Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~----l~~~-~~l-~~~~~~~~ilv~ 130 (188)
T cd07392 69 GLLT-SAGLNLHGKVVEVGGYTFVGIGGSNPTPFNTPI-----------ELSEEE----IVSD-GRL-NNLLAKNLILVT 130 (188)
T ss_pred Hhhh-cCcEecCCCEEEECCEEEEEeCCCCCCCCCCcc-----------ccCHHH----HHHh-hhh-hccCCCCeEEEE
Confidence 1110 0100011111223445555554421 11100 122122 2222 222 233457899999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEee
Q 018902 194 HNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNG 273 (349)
Q Consensus 194 H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~ 273 (349)
|+||+.... |........|+ +++.++++ ++++++++|||+|.. .+..++ ++|.++|+
T Consensus 131 H~pp~~~~~--------d~~~~~~~~g~----~~l~~li~--~~~~~~~l~GH~H~~----~~~~~~-----~~~~~~n~ 187 (188)
T cd07392 131 HAPPYGTAV--------DRVSGGFHVGS----KAIRKFIE--ERQPLLCICGHIHES----RGVDKI-----GNTLVVNP 187 (188)
T ss_pred CCCCcCCcc--------cccCCCCccCC----HHHHHHHH--HhCCcEEEEeccccc----cceeee-----CCeEEecC
Confidence 999976311 11111111266 44555665 346999999999998 334455 78999998
Q ss_pred c
Q 018902 274 A 274 (349)
Q Consensus 274 g 274 (349)
|
T Consensus 188 G 188 (188)
T cd07392 188 G 188 (188)
T ss_pred C
Confidence 7
No 6
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.87 E-value=1.8e-20 Score=173.11 Aligned_cols=224 Identities=19% Similarity=0.248 Sum_probs=126.9
Q ss_pred CCccEEEEEeCCCCCcC-------------hHHHHHHhhCC--CCCEEEEcCCCCCCc-----HHHHHHHHcCCCCEEEE
Q 018902 36 ASVVRIVIVGDVHDDWD-------------LQEDSKALQLL--KPDLVLFTGDFGNEN-----VEIVQSVAELEFPKAVI 95 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~-------------~~~~~~~i~~~--~pD~vI~~GDl~~~~-----~~~l~~l~~l~~Pi~~V 95 (349)
.++|||+++||+|+... .++.++.+++. +||+||++|||++.. ..+.+.+.+++.|+++|
T Consensus 12 ~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~~v 91 (275)
T PRK11148 12 EARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCVWL 91 (275)
T ss_pred CCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEEEe
Confidence 46799999999997321 14566776643 799999999999853 34666777889999999
Q ss_pred cCCCCCCccccccccchhHHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHH
Q 018902 96 LGNHDSWKTQEFSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKR 175 (349)
Q Consensus 96 ~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
+||||.... +...+...+... ....+..+.+.+.++++.. .|.. ...++ .++++|
T Consensus 92 ~GNHD~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~i~Lds~~---~g~~-------~G~l~----~~ql~w 146 (275)
T PRK11148 92 PGNHDFQPA----------MYSALQDAGISP-AKHVLIGEHWQILLLDSQV---FGVP-------HGELS----EYQLEW 146 (275)
T ss_pred CCCCCChHH----------HHHHHhhcCCCc-cceEEecCCEEEEEecCCC---CCCc-------CCEeC----HHHHHH
Confidence 999997421 122222111110 1111222334455444421 1110 01122 245678
Q ss_pred HHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-CccEEEeCccCCCcccC
Q 018902 176 IYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKL-CIPLVVFGHMHKELAYG 254 (349)
Q Consensus 176 l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~-~~~lvl~GH~H~~~~~~ 254 (349)
+.+.+++.+ +++.||++||+|...+.. |.......+. +.+.++++ ++ ++++|++||+|.....
T Consensus 147 L~~~L~~~~-~~~~vv~~hH~P~~~~~~--------~~d~~~l~n~----~~l~~ll~--~~~~v~~vl~GH~H~~~~~- 210 (275)
T PRK11148 147 LERKLADAP-ERHTLVLLHHHPLPAGCA--------WLDQHSLRNA----HELAEVLA--KFPNVKAILCGHIHQELDL- 210 (275)
T ss_pred HHHHHhhCC-CCCeEEEEcCCCCCCCcc--------hhhccCCCCH----HHHHHHHh--cCCCceEEEecccChHHhc-
Confidence 888887764 456788888877654321 1111111112 45666776 43 7999999999997321
Q ss_pred CcceEEEEEcCCceEEE-eecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEe-CCeEeEEE
Q 018902 255 NGLRKMIVVGADSTIYL-NGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEIL-DGRIDKIA 325 (349)
Q Consensus 255 ~g~~~~~~~~~~gt~yv-n~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~-~~~v~~~~ 325 (349)
.. +|+.|+ +++........... + .. ..++.+|.++++. +|+++...
T Consensus 211 ----~~-----~gi~~~~~ps~~~q~~~~~~~-----~-----~~------~~~~~g~~~~~l~~~g~~~~~~ 258 (275)
T PRK11148 211 ----DW-----NGRRLLATPSTCVQFKPHCTN-----F-----TL------DTVAPGWRELELHADGSLETEV 258 (275)
T ss_pred ----eE-----CCEEEEEcCCCcCCcCCCCCc-----c-----cc------ccCCCcEEEEEEcCCCcEEEEE
Confidence 22 566554 44443332221110 0 00 1355789999995 56665544
No 7
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.86 E-value=2.3e-20 Score=168.69 Aligned_cols=188 Identities=20% Similarity=0.289 Sum_probs=114.9
Q ss_pred EEEEEeCCCCCcC-------------hHHHHHHhhCC--CCCEEEEcCCCCCCc-----HHHHHHHHcCCCCEEEEcCCC
Q 018902 40 RIVIVGDVHDDWD-------------LQEDSKALQLL--KPDLVLFTGDFGNEN-----VEIVQSVAELEFPKAVILGNH 99 (349)
Q Consensus 40 ril~iSDlH~~~~-------------~~~~~~~i~~~--~pD~vI~~GDl~~~~-----~~~l~~l~~l~~Pi~~V~GNH 99 (349)
||+++||+|.+.. .+++++.+++. +||+||++|||++.. ..+.+.+.++++|+++|+|||
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNH 80 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNH 80 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 6999999999853 15567777776 999999999999852 346666777789999999999
Q ss_pred CCCccccccccchhHHHHHHHHhC-CcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHH
Q 018902 100 DSWKTQEFSGKKKDGVQLQLECLG-EEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYK 178 (349)
Q Consensus 100 D~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (349)
|.... +...+.... ........++..++.+.++++...... .+ .-..+++.|+.+
T Consensus 81 D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~-------------~~-~~~~~ql~wL~~ 136 (240)
T cd07402 81 DDRAA----------MRAVFPELPPAPGFVQYVVDLGGWRLILLDSSVPGQH-------------GG-ELCAAQLDWLEA 136 (240)
T ss_pred CCHHH----------HHHhhccccccccccceeEecCCEEEEEEeCCCCCCc-------------CC-EECHHHHHHHHH
Confidence 97421 122221110 000111223445555555544211000 01 112235677777
Q ss_pred HHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-CccEEEeCccCCCcccCCcc
Q 018902 179 VALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKL-CIPLVVFGHMHKELAYGNGL 257 (349)
Q Consensus 179 ~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~-~~~lvl~GH~H~~~~~~~g~ 257 (349)
.+.+.+ ++++|+++|+||...+.. +.......+ .+.+.++++ ++ +++++++||+|... .
T Consensus 137 ~L~~~~-~~~~il~~H~pp~~~~~~--------~~~~~~~~~----~~~~~~~l~--~~~~v~~v~~GH~H~~~-----~ 196 (240)
T cd07402 137 ALAEAP-DKPTLVFLHHPPFPVGIA--------WMDAIGLRN----AEALAAVLA--RHPNVRAILCGHVHRPI-----D 196 (240)
T ss_pred HHHhCC-CCCEEEEECCCCccCCch--------hhhhhhCCC----HHHHHHHHh--cCCCeeEEEECCcCchH-----H
Confidence 777765 678999999999765221 100000011 255666666 45 79999999999972 2
Q ss_pred eEEEEEcCCceEEEeeccc
Q 018902 258 RKMIVVGADSTIYLNGAIV 276 (349)
Q Consensus 258 ~~~~~~~~~gt~yvn~g~~ 276 (349)
.+. +|+.|+++|++
T Consensus 197 ~~~-----~g~~~~~~gs~ 210 (240)
T cd07402 197 GSW-----GGIPLLTAPST 210 (240)
T ss_pred eEE-----CCEEEEEcCcc
Confidence 234 67888888775
No 8
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.84 E-value=1.8e-20 Score=161.56 Aligned_cols=206 Identities=20% Similarity=0.283 Sum_probs=117.3
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCC------cH--------------------------HHHHHH
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNE------NV--------------------------EIVQSV 85 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~------~~--------------------------~~l~~l 85 (349)
-||+.+||.|+.... ++++..+....||+|+++||+... .. .+++.|
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 489999999999775 778888888899999999999742 11 467788
Q ss_pred HcCCCCEEEEcCCCCCCccccccccchhHHHHHHHH----hC--CcceeeEEeecC-CceEEEeCCeeeecCCchhhhhh
Q 018902 86 AELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLEC----LG--EEHVAYRRLDFP-TLKLSIVGGRPFSCGGQQIFRKR 158 (349)
Q Consensus 86 ~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~----~~--~~~~~~~~l~~~-~~~i~~~g~~~~~~~g~~~~~~~ 158 (349)
..+++|+++||||||.+... .+++.+.. .+ +.+-++ ...+ .+.+.+.||.- +.+...
T Consensus 86 ~~~~~p~~~vPG~~Dap~~~--------~lr~a~~~e~v~p~~~~vH~sf--~~~~g~y~v~G~GGeI--~~~~~~---- 149 (255)
T PF14582_consen 86 GELGVPVFVVPGNMDAPERF--------FLREAYNAEIVTPHIHNVHESF--FFWKGEYLVAGMGGEI--TDDQRE---- 149 (255)
T ss_dssp HCC-SEEEEE--TTS-SHHH--------HHHHHHHCCCC-TTEEE-CTCE--EEETTTEEEEEE-SEE--ESSS-B----
T ss_pred HhcCCcEEEecCCCCchHHH--------HHHHHhccceeccceeeeeeee--cccCCcEEEEecCccc--cCCCcc----
Confidence 88899999999999986431 12222220 00 011111 1123 35566666631 111100
Q ss_pred hhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCC-CCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhcC
Q 018902 159 LLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGP-SGLGSEPNDICGKDWGFGGGDH-GDPDLAQAISLLKETTK 236 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP-~~~g~~~~~~~~~d~~~~~~~~-G~~~~~~al~~l~~~~~ 236 (349)
..+.+....+..+...+.+.+.. +.++|++.|.|| ... +..| || +++..+++ .
T Consensus 150 ---~~~~LrYP~weaey~lk~l~elk-~~r~IlLfhtpPd~~k---------------g~~h~GS----~~V~dlIk--~ 204 (255)
T PF14582_consen 150 ---EEFKLRYPAWEAEYSLKFLRELK-DYRKILLFHTPPDLHK---------------GLIHVGS----AAVRDLIK--T 204 (255)
T ss_dssp ---CSSS-EEEHHHHHHHHGGGGGCT-SSEEEEEESS-BTBCT---------------CTBTTSB----HHHHHHHH--H
T ss_pred ---ccccccchHHHHHHHHHHHHhcc-cccEEEEEecCCccCC---------------CcccccH----HHHHHHHH--h
Confidence 01112222233344445555554 457999999999 221 2234 88 77788888 4
Q ss_pred CCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEE
Q 018902 237 LCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEI 316 (349)
Q Consensus 237 ~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i 316 (349)
++|++|+|||+|.. .+..++ +.|++||||+.- + ..|++|++
T Consensus 205 ~~P~ivl~Ghihe~----~~~e~l-----G~TlVVNPGsL~-----------------------------~-G~yAvI~l 245 (255)
T PF14582_consen 205 YNPDIVLCGHIHES----HGKESL-----GKTLVVNPGSLA-----------------------------E-GDYAVIDL 245 (255)
T ss_dssp H--SEEEE-SSS-E----E--EEE-----TTEEEEE--BGG-----------------------------G-TEEEEEET
T ss_pred cCCcEEEecccccc----hhhHHh-----CCEEEecCcccc-----------------------------c-CceeEEEe
Confidence 57999999999999 677788 899999999862 2 47999999
Q ss_pred eCCeEeEE
Q 018902 317 LDGRIDKI 324 (349)
Q Consensus 317 ~~~~v~~~ 324 (349)
.+.+|...
T Consensus 246 ~~~~v~~g 253 (255)
T PF14582_consen 246 EQDKVEFG 253 (255)
T ss_dssp TTTEEEEE
T ss_pred cccccccC
Confidence 99988653
No 9
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.83 E-value=1.6e-19 Score=163.42 Aligned_cols=208 Identities=20% Similarity=0.221 Sum_probs=111.9
Q ss_pred EEEEEeCCCCCcCh-------HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHc-CCCCEEEEcCCCCCCcccccc
Q 018902 40 RIVIVGDVHDDWDL-------QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAE-LEFPKAVILGNHDSWKTQEFS 108 (349)
Q Consensus 40 ril~iSDlH~~~~~-------~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~-l~~Pi~~V~GNHD~~~~~~~~ 108 (349)
||+++||+|++... +++++.+++.++|+||++|||++.. .++++.+.+ .+.|+++|+||||++.....
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNHD~~~~~~~- 79 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNHDMLKDLTY- 79 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCCCCCCCCCH-
Confidence 69999999975321 3466777778999999999999843 345666665 36899999999998622111
Q ss_pred ccchhHHHHHH--HHhCCcceeeEEeecCCceEEEeCCeeeecC--Cchhhhh---hh-----hhh-c-cCCcc---hHH
Q 018902 109 GKKKDGVQLQL--ECLGEEHVAYRRLDFPTLKLSIVGGRPFSCG--GQQIFRK---RL-----LSV-R-YGVQD---MDE 171 (349)
Q Consensus 109 ~~~~~~~~~~l--~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~--g~~~~~~---~~-----~~~-~-~~~~~---~~~ 171 (349)
..+.+.+ ..+.+.. ..+...+ +.++|.+.|.-. +...... .. ... . .+... ..+
T Consensus 80 ----~~~~~~~~~~~l~~~~---~~~~~~~--~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (239)
T TIGR03729 80 ----EEIESNDSPLYLHNRF---IDIPNTQ--WRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPERTAI 150 (239)
T ss_pred ----HHHHhccchhhhcccc---cccCCCc--eEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHHHHH
Confidence 1111110 0111111 1111133 334444322211 1100000 00 000 0 11111 234
Q ss_pred HHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCC
Q 018902 172 SAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICG-KDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKE 250 (349)
Q Consensus 172 ~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~-~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~ 250 (349)
++.++.+.+++.. ++++|+++|+||....-. ..++ ..|.......|+. .+.++++ ++++++|+|||+|..
T Consensus 151 ~l~~l~~~l~~~~-~~~~ivvtH~pP~~~~~~--~~~~~~~~~~~~~~~~s~----~l~~li~--~~~v~~~i~GH~H~~ 221 (239)
T TIGR03729 151 VLKQLKKQLNQLD-NKQVIFVTHFVPHRDFIY--VPMDHRRFDMFNAFLGSQ----HFGQLLV--KYEIKDVIFGHLHRR 221 (239)
T ss_pred HHHHHHHHHHhcC-CCCEEEEEcccchHHHhc--CCCCCcchhhhhhccChH----HHHHHHH--HhCCCEEEECCccCC
Confidence 5677777776654 467999999999642110 0011 1232222233554 4455555 347999999999998
Q ss_pred cccCCcceEEEEEcCCceEEEeecc
Q 018902 251 LAYGNGLRKMIVVGADSTIYLNGAI 275 (349)
Q Consensus 251 ~~~~~g~~~~~~~~~~gt~yvn~g~ 275 (349)
. ...++ +++.|+|...
T Consensus 222 ~----~~~~i-----~~~~~~~~~~ 237 (239)
T TIGR03729 222 F----GPLTI-----GGTTYHNRPL 237 (239)
T ss_pred C----CCEEE-----CCEEEEecCC
Confidence 3 22344 7888888753
No 10
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.83 E-value=6.1e-19 Score=162.14 Aligned_cols=224 Identities=17% Similarity=0.189 Sum_probs=128.4
Q ss_pred cEEEEEeCCCCCcC--------------hHHHHHHhhCCCCCEEEEcCCCCCCcH--------HHHHHHHcCCCCEEEEc
Q 018902 39 VRIVIVGDVHDDWD--------------LQEDSKALQLLKPDLVLFTGDFGNENV--------EIVQSVAELEFPKAVIL 96 (349)
Q Consensus 39 mril~iSDlH~~~~--------------~~~~~~~i~~~~pD~vI~~GDl~~~~~--------~~l~~l~~l~~Pi~~V~ 96 (349)
+||+++||+|.... .++.++.+++.+||+||++||+++... .+.+.+.++++|+++++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~ 80 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL 80 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence 68999999996542 145677888889999999999997432 24556667789999999
Q ss_pred CCCCCCccccccccchhHHH-HHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhh--------hh---hh----
Q 018902 97 GNHDSWKTQEFSGKKKDGVQ-LQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFR--------KR---LL---- 160 (349)
Q Consensus 97 GNHD~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~--------~~---~~---- 160 (349)
||||....... ... ......+..+. .....++.+.++.+......+..... .. .+
T Consensus 81 GNHD~~~~~~~------~~~~~~~~~~~~~yy---sf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (267)
T cd07396 81 GNHDLYNPSRE------YLLLYTLLGLGAPYY---SFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEP 151 (267)
T ss_pred CccccccccHh------hhhcccccCCCCceE---EEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCc
Confidence 99998643210 010 00011222222 22335566666665333222110000 00 00
Q ss_pred -hhccCCcchHHHHHHHHHHHhCCC-CCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 018902 161 -SVRYGVQDMDESAKRIYKVALGTP-DDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLC 238 (349)
Q Consensus 161 -~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~ 238 (349)
...+...--.+++.|+.+.++... ..++.|+++|+||...+.. +. ...+. .+.+.+++++. .+
T Consensus 152 ~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~-------~~---~~~~~----~~~~~~ll~~~-~~ 216 (267)
T cd07396 152 RFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTS-------PH---GLLWN----HEEVLSILRAY-GC 216 (267)
T ss_pred cceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCC-------cc---ccccC----HHHHHHHHHhC-CC
Confidence 000000112356778888777654 3467899999988543210 00 00111 24456666632 37
Q ss_pred ccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeC
Q 018902 239 IPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILD 318 (349)
Q Consensus 239 ~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~ 318 (349)
+++|++||+|.... ... +|+.|+..++.-.-. .+...|.+|++-+
T Consensus 217 V~~v~~GH~H~~~~-----~~~-----~gi~~~~~~a~~~~~-------------------------~~~~~~~~~~~~~ 261 (267)
T cd07396 217 VKACISGHDHEGGY-----AQR-----HGIHFLTLEGMVETP-------------------------PESNAFGVVIVYE 261 (267)
T ss_pred EEEEEcCCcCCCCc-----ccc-----CCeeEEEechhhcCC-------------------------CCCCceEEEEEeC
Confidence 99999999999832 122 677777777642211 3346899999977
Q ss_pred CeE
Q 018902 319 GRI 321 (349)
Q Consensus 319 ~~v 321 (349)
+++
T Consensus 262 ~~~ 264 (267)
T cd07396 262 DRL 264 (267)
T ss_pred Cce
Confidence 765
No 11
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.82 E-value=3.1e-19 Score=164.28 Aligned_cols=158 Identities=22% Similarity=0.228 Sum_probs=96.7
Q ss_pred CCccEEEEEeCCCCCcC-----hHHHHHHhhCCCCCEEEEcCCCCCC--c---HHHHHHHHcC--CCCEEEEcCCCCCCc
Q 018902 36 ASVVRIVIVGDVHDDWD-----LQEDSKALQLLKPDLVLFTGDFGNE--N---VEIVQSVAEL--EFPKAVILGNHDSWK 103 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~-----~~~~~~~i~~~~pD~vI~~GDl~~~--~---~~~l~~l~~l--~~Pi~~V~GNHD~~~ 103 (349)
.++|||+++||+|.+.. .+++++.+++.+||+|+++||+++. . .++.+.|.++ ..|+|+|+||||++.
T Consensus 47 ~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~ 126 (271)
T PRK11340 47 AAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPV 126 (271)
T ss_pred CCCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCccc
Confidence 35699999999999743 2556777888899999999999872 1 2333333333 479999999999853
Q ss_pred cccccccchhHHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCC
Q 018902 104 TQEFSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGT 183 (349)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 183 (349)
... ....+.+.++..+ +..+.++...+. .++..+.+.|..... .+..+. .+.+
T Consensus 127 ~~~----~~~~~~~~l~~~g-----i~lL~n~~~~i~-~~~~~i~i~G~~d~~-------~~~~~~-------~~~~--- 179 (271)
T PRK11340 127 GTE----KNHLIGETLKSAG-----ITVLFNQATVIA-TPNRQFELVGTGDLW-------AGQCKP-------PPAS--- 179 (271)
T ss_pred Ccc----chHHHHHHHHhcC-----cEEeeCCeEEEe-eCCcEEEEEEecchh-------ccCCCh-------hHhc---
Confidence 211 1122444554433 345666655555 455556655543211 111110 1111
Q ss_pred CCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcc
Q 018902 184 PDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELA 252 (349)
Q Consensus 184 ~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~ 252 (349)
.++.++|+++|.|-. +.... +.++|+++|||||..|.
T Consensus 180 ~~~~~~IlL~H~P~~-----------------------------~~~~~---~~~~dL~lsGHTHGGQi 216 (271)
T PRK11340 180 EANLPRLVLAHNPDS-----------------------------KEVMR---DEPWDLMLCGHTHGGQL 216 (271)
T ss_pred CCCCCeEEEEcCCCh-----------------------------hHhhc---cCCCCEEEeccccCCeE
Confidence 235689999999621 11121 35799999999999764
No 12
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.79 E-value=3.2e-18 Score=154.11 Aligned_cols=199 Identities=19% Similarity=0.191 Sum_probs=104.5
Q ss_pred EEEEeCCCCCc--------Ch---HHHHHHhhCC------CCCEEEEcCCCCCCc-----HHHHHHHHcCCCCEEEEcCC
Q 018902 41 IVIVGDVHDDW--------DL---QEDSKALQLL------KPDLVLFTGDFGNEN-----VEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 41 il~iSDlH~~~--------~~---~~~~~~i~~~------~pD~vI~~GDl~~~~-----~~~l~~l~~l~~Pi~~V~GN 98 (349)
|.++||+|... .. ++.++.+.+. +||+||++|||++.. .+.++.|.+++.|+|+|+||
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GN 80 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGN 80 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCC
Confidence 57899999883 22 3444444433 999999999999642 24555666667789999999
Q ss_pred CCCCccccccccchhHHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhh-hhhhhhccCCcchHHHHHHHH
Q 018902 99 HDSWKTQEFSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFR-KRLLSVRYGVQDMDESAKRIY 177 (349)
Q Consensus 99 HD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~ 177 (349)
||++.. ....+++.+...+.....-.....+. +.++|.+.+...+..+.. .+.........-...++.|+.
T Consensus 81 HD~~~~------~~~~~~~~l~~~~~~~~~n~~~~~~~--i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 152 (232)
T cd07393 81 HDYWWG------SASKLRKALEESRLALLFNNAYIDDD--VAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLE 152 (232)
T ss_pred ccccCC------CHHHHHHHHHhcCeEEeccCcEEECC--EEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHH
Confidence 998421 12234444443221100000111122 344444333322211100 000000001111233456666
Q ss_pred HHHhCCCC---CCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccC
Q 018902 178 KVALGTPD---DHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYG 254 (349)
Q Consensus 178 ~~l~~~~~---~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~ 254 (349)
+.+++.+. ..++|+++|+||+..+ .+. ..+..+++ +++++++++||+|......
T Consensus 153 ~~L~~~~~~~~~~~~i~~~H~p~~~~~-----------------~~~----~~~~~~~~--~~~v~~vl~GH~H~~~~~~ 209 (232)
T cd07393 153 LSLKAAKKREKEKIKIVMLHYPPANEN-----------------GDD----SPISKLIE--EYGVDICVYGHLHGVGRDR 209 (232)
T ss_pred HHHHHHHhCCCCCCEEEEECCCCcCCC-----------------CCH----HHHHHHHH--HcCCCEEEECCCCCCcccc
Confidence 66665432 2469999999986541 112 23445555 3479999999999984311
Q ss_pred CcceEEEEEcCCceEEEeecc
Q 018902 255 NGLRKMIVVGADSTIYLNGAI 275 (349)
Q Consensus 255 ~g~~~~~~~~~~gt~yvn~g~ 275 (349)
.-.... +|+.|+++.+
T Consensus 210 ~~~~~~-----~gi~~~~~~~ 225 (232)
T cd07393 210 AINGER-----GGIRYQLVSA 225 (232)
T ss_pred cccceE-----CCEEEEEEcc
Confidence 000112 6777766654
No 13
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.79 E-value=6.2e-18 Score=143.28 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=49.6
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCC-CCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLL-KPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDS 101 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~-~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~ 101 (349)
|||+++||+|..... +...+.++.. ++|.|+++||+++ .++++.+.++..|+++|+||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~--~~~~~~l~~~~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTS--PFVLKEFEDLAAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCC--HHHHHHHHHhCCceEEEccCCCc
Confidence 799999999987654 4455666666 8999999999984 46677777767789999999996
No 14
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.79 E-value=5.1e-18 Score=158.10 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=119.4
Q ss_pred CCccEEEEEeCCCCC-cChHHHHHHhhC--CCCCEEEEcCCCCCC--c------HHHHHHHHcC--CCCEEEEcCCCCCC
Q 018902 36 ASVVRIVIVGDVHDD-WDLQEDSKALQL--LKPDLVLFTGDFGNE--N------VEIVQSVAEL--EFPKAVILGNHDSW 102 (349)
Q Consensus 36 ~~~mril~iSDlH~~-~~~~~~~~~i~~--~~pD~vI~~GDl~~~--~------~~~l~~l~~l--~~Pi~~V~GNHD~~ 102 (349)
..++||+++||+|.+ ....+.++.+.+ .+||+||++||++.. . ..+.+.+..+ .+|+++++||||..
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 81 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEAD 81 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCcccccc
Confidence 357899999999974 333556666655 799999999999842 1 2344444433 68999999999987
Q ss_pred ccccccccchhHHHHHHHHhCC--cceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHH
Q 018902 103 KTQEFSGKKKDGVQLQLECLGE--EHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVA 180 (349)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 180 (349)
................+..... ..-.+...+...+.+.++++..... ......++++|+.+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~---------------~~~~~~~q~~WL~~~L 146 (294)
T cd00839 82 YNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFY---------------GDGPGSPQYDWLEADL 146 (294)
T ss_pred cCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccc---------------cCCCCcHHHHHHHHHH
Confidence 5432110000000000000000 0011222334555555555432110 0011234567787777
Q ss_pred hCCCCC--CeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCC---
Q 018902 181 LGTPDD--HLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGN--- 255 (349)
Q Consensus 181 ~~~~~~--~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~--- 255 (349)
++.++. +++|+++|+|++..+.... .| ....+.++++..+++ +++++++++||+|..++...
T Consensus 147 ~~~~~~~~~~~iv~~H~P~~~~~~~~~-~~----------~~~~~~~~~l~~ll~--~~~v~~vl~GH~H~y~r~~p~~~ 213 (294)
T cd00839 147 AKVDRSKTPWIIVMGHRPMYCSNTDHD-DC----------IEGEKMRAALEDLFY--KYGVDLVLSGHVHAYERTCPVYN 213 (294)
T ss_pred HHhcccCCCeEEEEeccCcEecCcccc-cc----------chhHHHHHHHHHHHH--HhCCCEEEEccceeeEeechhhC
Confidence 766442 4589999998865422110 00 112566788888888 56799999999999854321
Q ss_pred cc---eEEEEEcCCceEEEeecc
Q 018902 256 GL---RKMIVVGADSTIYLNGAI 275 (349)
Q Consensus 256 g~---~~~~~~~~~gt~yvn~g~ 275 (349)
+. ......+++|++|+-.|+
T Consensus 214 ~~~~~~~~~~~~~~g~~yiv~G~ 236 (294)
T cd00839 214 GTVVGDCNPYSNPKGPVHIVIGA 236 (294)
T ss_pred CEeccccccccCCCccEEEEECC
Confidence 00 000123446889987765
No 15
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.79 E-value=2.2e-17 Score=158.61 Aligned_cols=242 Identities=17% Similarity=0.166 Sum_probs=126.5
Q ss_pred CccEEEEEeCCCCCcCh-------------HHHHHHhhCCCCCEEEEcCCCCCCc-------HHHHHHHHc---------
Q 018902 37 SVVRIVIVGDVHDDWDL-------------QEDSKALQLLKPDLVLFTGDFGNEN-------VEIVQSVAE--------- 87 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-------------~~~~~~i~~~~pD~vI~~GDl~~~~-------~~~l~~l~~--------- 87 (349)
++|||+|+||+|++... +++++.+...++|+||++|||+|.. .++++.|++
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 67999999999997421 4566777788999999999999852 123333332
Q ss_pred ---------------------------CCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcceeeEEeecCCceE-
Q 018902 88 ---------------------------LEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKL- 139 (349)
Q Consensus 88 ---------------------------l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i- 139 (349)
..+|+|+|.||||....... ......+...|...+-......+.+.+
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~~~~-----~~~l~lL~~~Glvnifgk~~~~~~i~~~ 156 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGL-----LCALDLLHATGLVNYFGKVPEIDNIIVS 156 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcccccc-----ccHHHHHHhCCCEEEeccccccccceee
Confidence 46899999999998653210 113334444332111000001111111
Q ss_pred --EE-eCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhC-CCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCC
Q 018902 140 --SI-VGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALG-TPDDHLVILLAHNGPSGLGSEPNDICGKDWGFG 215 (349)
Q Consensus 140 --~~-~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~ 215 (349)
.+ -|+....+.|......+.....+... .+.....+ .+.+.++|++.|+.-.+....
T Consensus 157 Pvll~kg~~~valyGl~~~~d~rl~~~f~~~-------~v~~~~p~~~~~~~fnIlv~Hq~~~~~~~~------------ 217 (405)
T TIGR00583 157 PILLQKGETKLALYGISNVRDERLVRTFKDN-------KVSFLRPNAGAEDWFNLLVLHQNHAAHTST------------ 217 (405)
T ss_pred eEEEecCCeeEEEecCCCCCHHHHHHHhhcc-------chhhhccccCCCCceEEEEeCceecCCCCc------------
Confidence 11 13333333333221111000001100 00000011 123568999999953211000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCcccc
Q 018902 216 GGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSN 295 (349)
Q Consensus 216 ~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~ 295 (349)
.+ .-..++. ..+|||+.||.|..+..... . ..++..+++||+..+....++.
T Consensus 218 --~~-------ipe~llp---~~fDYValGHiH~~~~~p~~---~---~~~~~~V~ypGS~v~tSf~e~E---------- 269 (405)
T TIGR00583 218 --SF-------LPESFIP---DFFDLVIWGHEHECLPDPVY---N---PSDGFYVLQPGSTVATSLTPGE---------- 269 (405)
T ss_pred --cc-------Cchhhhh---ccCcEEEecccccccccccc---c---CCCCceEEECCCcccccccccc----------
Confidence 01 0122332 35999999999997432211 0 0134567889997665554421
Q ss_pred cccccCCCCCCceeeEEEEEEeCCeEeEEEEEeeeecCCcceeEEEeee
Q 018902 296 KTSFLRPDSKGTVRAFTVVEILDGRIDKIAERWIIVVGDTTTLQEEHIL 344 (349)
Q Consensus 296 ~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 344 (349)
..+++|.+|+|++++++.+..-. .+.+++...++-
T Consensus 270 ----------~~~Kgv~lVeI~~~~~~~~~IpL----~~vRpf~~~~i~ 304 (405)
T TIGR00583 270 ----------ALPKHVFILNIKGRKFASKPIPL----QTVRPFVMKEIL 304 (405)
T ss_pred ----------cCCCEEEEEEEcCCeeEEEEeeC----CCcccEEEEEEE
Confidence 35789999999988765533222 234566665553
No 16
>PLN02533 probable purple acid phosphatase
Probab=99.79 E-value=1.1e-17 Score=162.74 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=121.0
Q ss_pred CccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCc---------HHHHHHHHcCCCCEEEEcCCCCCCccccc
Q 018902 37 SVVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNEN---------VEIVQSVAELEFPKAVILGNHDSWKTQEF 107 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~---------~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~ 107 (349)
.++||+++||+|........++.+++.+||+||++|||+... .+.++.+.. .+|+++++||||.......
T Consensus 138 ~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s-~~P~m~~~GNHE~~~~~~~ 216 (427)
T PLN02533 138 FPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLAS-QRPWMVTHGNHELEKIPIL 216 (427)
T ss_pred CCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhh-cCceEEeCccccccccccc
Confidence 579999999998765556678888888999999999998531 123333332 6899999999998642111
Q ss_pred cccchhHHHHHHHHh----CCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCC
Q 018902 108 SGKKKDGVQLQLECL----GEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGT 183 (349)
Q Consensus 108 ~~~~~~~~~~~l~~~----~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 183 (349)
.......+...+... +...-.|...+...+.+..+++.. . + ....++.+||.+.|++.
T Consensus 217 ~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~---~-------------~--~~~~~Q~~WLe~dL~~~ 278 (427)
T PLN02533 217 HPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYT---D-------------F--EPGSEQYQWLENNLKKI 278 (427)
T ss_pred cCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCc---c-------------c--cCchHHHHHHHHHHHhh
Confidence 000011122211111 100011222333445555444321 0 1 11235678888888776
Q ss_pred CC--CCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEE
Q 018902 184 PD--DHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMI 261 (349)
Q Consensus 184 ~~--~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~ 261 (349)
++ ..++|+++|+|++..+....+ ..-...+++.+..+++ ++++|++++||+|...+...-...
T Consensus 279 ~r~~~pwiIv~~H~P~y~s~~~~~~-----------~~~~~~~r~~le~Ll~--~~~VdlvlsGH~H~YeR~~p~~~~-- 343 (427)
T PLN02533 279 DRKTTPWVVAVVHAPWYNSNEAHQG-----------EKESVGMKESMETLLY--KARVDLVFAGHVHAYERFDRVYQG-- 343 (427)
T ss_pred cccCCCEEEEEeCCCeeecccccCC-----------cchhHHHHHHHHHHHH--HhCCcEEEecceecccccccccCC--
Confidence 53 245789999998765321100 0001345678888888 567999999999988543211000
Q ss_pred EEcCCceEEEeeccc
Q 018902 262 VVGADSTIYLNGAIV 276 (349)
Q Consensus 262 ~~~~~gt~yvn~g~~ 276 (349)
.+++.|++||..|..
T Consensus 344 ~~~~~gpvyiv~G~g 358 (427)
T PLN02533 344 KTDKCGPVYITIGDG 358 (427)
T ss_pred ccCCCCCEEEEeCCC
Confidence 124468999988764
No 17
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.78 E-value=7.8e-18 Score=153.77 Aligned_cols=182 Identities=19% Similarity=0.204 Sum_probs=104.9
Q ss_pred EEEEeCCCCCcCh--------HHHHHHhhCCCCCEEEEcCCCCCCcH--------------HHHHHHHc---C-CCCEEE
Q 018902 41 IVIVGDVHDDWDL--------QEDSKALQLLKPDLVLFTGDFGNENV--------------EIVQSVAE---L-EFPKAV 94 (349)
Q Consensus 41 il~iSDlH~~~~~--------~~~~~~i~~~~pD~vI~~GDl~~~~~--------------~~l~~l~~---l-~~Pi~~ 94 (349)
|+++||+|++... +.+++.++..+||+||++||++|... .+++.+.. + +.|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 7999999998652 12456777889999999999997421 33444432 2 479999
Q ss_pred EcCCCCCCccccccccchhHHHHHHHHhCCcceeeE-EeecCCceEEEeCCeeeecCCch-hhhhhhhhhccCCcchHHH
Q 018902 95 ILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHVAYR-RLDFPTLKLSIVGGRPFSCGGQQ-IFRKRLLSVRYGVQDMDES 172 (349)
Q Consensus 95 V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~i~~~g~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~ 172 (349)
|+||||.+....... ....++++....+.....+. ....+++.+.++++..+ .+.. .+ ...+. -..++
T Consensus 82 v~GNHD~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~--~~~~~~~------~~~g~-l~~~q 151 (256)
T cd07401 82 IRGNHDLFNIPSLDS-ENNYYRKYSATGRDGSFSFSHTTRFGNYSFIGVDPTLF--PGPKRPF------NFFGS-LDKKL 151 (256)
T ss_pred eCCCCCcCCCCCccc-hhhHHHHhheecCCCccceEEEecCCCEEEEEEcCccC--CCCCCCC------ceecc-CCHHH
Confidence 999999965432211 11223333322222211111 11235556666665321 1100 00 00111 11355
Q ss_pred HHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCc
Q 018902 173 AKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKEL 251 (349)
Q Consensus 173 ~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~ 251 (349)
++|+.+.+++.+..+++||++|+|+...... . ...... +.++++ ++++++++|||+|...
T Consensus 152 l~wL~~~L~~~~~~~~~IV~~HhP~~~~~~~--------~--------~~~~~~-~~~ll~--~~~v~~vl~GH~H~~~ 211 (256)
T cd07401 152 LDRLEKELEKSTNSNYTIWFGHYPTSTIISP--------S--------AKSSSK-FKDLLK--KYNVTAYLCGHLHPLG 211 (256)
T ss_pred HHHHHHHHHhcccCCeEEEEEcccchhccCC--------C--------cchhHH-HHHHHH--hcCCcEEEeCCccCCC
Confidence 6788888877766678999999987432110 0 011112 566676 5679999999999983
No 18
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.78 E-value=4.2e-18 Score=140.52 Aligned_cols=129 Identities=26% Similarity=0.443 Sum_probs=87.3
Q ss_pred EEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCc-----HHHHHHHHcCCCC-EEEEcCCCCCCccccccccchh
Q 018902 40 RIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNEN-----VEIVQSVAELEFP-KAVILGNHDSWKTQEFSGKKKD 113 (349)
Q Consensus 40 ril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~-----~~~l~~l~~l~~P-i~~V~GNHD~~~~~~~~~~~~~ 113 (349)
||+++||+|.... .++..++|+||++||+++.. .++++.+.+++.| +++|+||||.+..
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~~~~--------- 65 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAGNHDLTLD--------- 65 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCCCCeEEEEECCCCCcCC---------
Confidence 5899999999866 23457899999999999753 2466677776665 5789999995310
Q ss_pred HHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEe
Q 018902 114 GVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLA 193 (349)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~ 193 (349)
.+.++|+++
T Consensus 66 -----------------------------------------------------------------------~~~~~ilv~ 74 (135)
T cd07379 66 -----------------------------------------------------------------------PEDTDILVT 74 (135)
T ss_pred -----------------------------------------------------------------------CCCCEEEEE
Confidence 013479999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEee
Q 018902 194 HNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNG 273 (349)
Q Consensus 194 H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~ 273 (349)
|.||++..... ......|+..+.+.+ + +.+++++++||+|.+ .+.... ....++|.|+|+
T Consensus 75 H~~p~~~~~~~---------~~~~~~g~~~~~~~~----~--~~~~~~~i~GH~H~~----~~~~~~-~~~~~~t~~in~ 134 (135)
T cd07379 75 HGPPYGHLDLV---------SSGQRVGCEELLNRV----Q--RVRPKLHVFGHIHEG----YGAERV-LDTDGETLFVNA 134 (135)
T ss_pred CCCCCcCcccc---------ccCcccCCHHHHHHH----H--HHCCcEEEEcCcCCc----CceeEe-cccCCCEEEEeC
Confidence 99997763211 111123665554444 4 345999999999999 444411 112279999998
Q ss_pred c
Q 018902 274 A 274 (349)
Q Consensus 274 g 274 (349)
+
T Consensus 135 ~ 135 (135)
T cd07379 135 S 135 (135)
T ss_pred C
Confidence 6
No 19
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.78 E-value=1.8e-17 Score=153.17 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=129.4
Q ss_pred cEEEEEeCCCCC--cChH----HHHHHhhCCCCCEEEEcCCCCC-C------c----HHHHHHHHc--CCCCEEEEcCCC
Q 018902 39 VRIVIVGDVHDD--WDLQ----EDSKALQLLKPDLVLFTGDFGN-E------N----VEIVQSVAE--LEFPKAVILGNH 99 (349)
Q Consensus 39 mril~iSDlH~~--~~~~----~~~~~i~~~~pD~vI~~GDl~~-~------~----~~~l~~l~~--l~~Pi~~V~GNH 99 (349)
++|+++||.-.. .... .+.+.++..+||+||++||++. . . ..+.+.+.. +++|+++++|||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 589999999875 2222 2333444579999999999862 1 0 112222222 478999999999
Q ss_pred CCCccccccccchhHHHHH--HH--HhCCcceeeEEee---cCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHH
Q 018902 100 DSWKTQEFSGKKKDGVQLQ--LE--CLGEEHVAYRRLD---FPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDES 172 (349)
Q Consensus 100 D~~~~~~~~~~~~~~~~~~--l~--~~~~~~~~~~~l~---~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 172 (349)
|........ ..+... .. .+....+.+..-. .+.+.+.++++..+.-... .... ...........++
T Consensus 81 D~~~~~~~~----~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~--~~~~-~~~~~~~~~~~~Q 153 (277)
T cd07378 81 DYSGNVSAQ----IDYTKRPNSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSD--DIAS-PYGPPNGKLAEEQ 153 (277)
T ss_pred ccCCCchhe----eehhccCCCCCccCcchheEEEeecCCCCCEEEEEEEeChhHcCccc--cccc-cccCcchhhHHHH
Confidence 987432100 000000 00 0111122221100 1245566555542211000 0000 0000111223467
Q ss_pred HHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcc
Q 018902 173 AKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELA 252 (349)
Q Consensus 173 ~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~ 252 (349)
++|+.+.+++... +++||++|+||+..+.. ...+..++.+..+++ ++++++|++||+|....
T Consensus 154 ~~wL~~~L~~~~~-~~~iv~~H~P~~~~~~~---------------~~~~~~~~~l~~l~~--~~~v~~vl~GH~H~~~~ 215 (277)
T cd07378 154 LAWLEKTLAASTA-DWKIVVGHHPIYSSGEH---------------GPTSCLVDRLLPLLK--KYKVDAYLSGHDHNLQH 215 (277)
T ss_pred HHHHHHHHHhcCC-CeEEEEeCccceeCCCC---------------CCcHHHHHHHHHHHH--HcCCCEEEeCCccccee
Confidence 7888888887655 68999999998654211 112456677888888 45799999999999832
Q ss_pred cCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeE
Q 018902 253 YGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDK 323 (349)
Q Consensus 253 ~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~ 323 (349)
.. ....++.|+.+|+.......... ..+..... .....+..+|..++|++++++.
T Consensus 216 ~~--------~~~~~~~~i~~G~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~Gy~~i~v~~~~l~~ 270 (277)
T cd07378 216 IK--------DDGSGTSFVVSGAGSKARPSVKH-------IDKVPQFF-SGFTSSGGGFAYLELTKEELTV 270 (277)
T ss_pred ee--------cCCCCcEEEEeCCCcccCCCCCc-------cCcccccc-cccccCCCCEEEEEEecCEEEE
Confidence 21 12247888888764221111100 00000000 0012456899999999987765
No 20
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.78 E-value=3.3e-18 Score=143.96 Aligned_cols=59 Identities=29% Similarity=0.652 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
|||+++||+|++... +++++.+ .++|+||++||+++. .++++.++++ |+++|+||||..
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~-~~~~~~~~~~--~~~~v~GNHD~~ 60 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP-EEVLELLRDI--PVYVVRGNHDNW 60 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH-HHHHHHHHHH--EEEEE--CCHST
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH-HHHHHHHhcC--CEEEEeCCcccc
Confidence 899999999998764 5677777 569999999999984 6778877765 899999999964
No 21
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.76 E-value=1.8e-18 Score=147.65 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=44.1
Q ss_pred EEEEeCCCCCcChHH-HH-HHhhCCCCCEEEEcCCCCCCc--HHHH--HHHHcCCCCEEEEcCCCCCC
Q 018902 41 IVIVGDVHDDWDLQE-DS-KALQLLKPDLVLFTGDFGNEN--VEIV--QSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 41 il~iSDlH~~~~~~~-~~-~~i~~~~pD~vI~~GDl~~~~--~~~l--~~l~~l~~Pi~~V~GNHD~~ 102 (349)
|+++||+|.+..... .+ +.+...++|+|+++||+++.. .+.. ..+.....|+++|+||||++
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~~~~~~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAPLLLALKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHHHHHhhcCCccEEEeCCCcceE
Confidence 579999999876422 21 345567999999999999853 2222 23333478999999999964
No 22
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.76 E-value=1.5e-17 Score=148.65 Aligned_cols=158 Identities=26% Similarity=0.305 Sum_probs=96.1
Q ss_pred ccEEEEEeCCCCCcCh-----HHHHHHhhCCCCCEEEEcCCCCCCc----HHHHHHHHcC--CCCEEEEcCCCCCCcccc
Q 018902 38 VVRIVIVGDVHDDWDL-----QEDSKALQLLKPDLVLFTGDFGNEN----VEIVQSVAEL--EFPKAVILGNHDSWKTQE 106 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-----~~~~~~i~~~~pD~vI~~GDl~~~~----~~~l~~l~~l--~~Pi~~V~GNHD~~~~~~ 106 (349)
+|||+++||+|.+... +++++.+++.+||+|+++||+++.. ..+.+.+.++ +.|+++++||||+.....
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~ 80 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDE 80 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCch
Confidence 4899999999998652 5677778888999999999999853 2344455544 579999999999864321
Q ss_pred ccccchhHHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCC
Q 018902 107 FSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDD 186 (349)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 186 (349)
..+.+.++..+ +..+.++...+. .++..+.+.|..... .. ...+.+.+...+++
T Consensus 81 ------~~~~~~l~~~~-----v~~L~~~~~~~~-~~~~~i~i~G~~~~~-------~~-------~~~~~~~~~~~~~~ 134 (223)
T cd07385 81 ------ENWIEALESAG-----ITVLRNESVEIS-VGGATIGIAGVDDGL-------GR-------RPDLEKALKGLDED 134 (223)
T ss_pred ------HHHHHHHHHcC-----CEEeecCcEEec-cCCeEEEEEeccCcc-------cc-------CCCHHHHHhCCCCC
Confidence 11133443333 223444433332 222333333211000 00 11233445556667
Q ss_pred CeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCccc
Q 018902 187 HLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAY 253 (349)
Q Consensus 187 ~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~ 253 (349)
.++|+++|.|- .. ..+ . +.++|++++||+|..|.+
T Consensus 135 ~~~I~l~H~P~-~~----------------------------~~~-~--~~~~dl~l~GHtHggqi~ 169 (223)
T cd07385 135 DPNILLAHQPD-TA----------------------------EEA-A--AWGVDLQLSGHTHGGQIR 169 (223)
T ss_pred CCEEEEecCCC-hh----------------------------HHh-c--ccCccEEEeccCCCCEEe
Confidence 89999999952 11 111 1 357999999999998643
No 23
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.76 E-value=7.2e-17 Score=143.52 Aligned_cols=144 Identities=22% Similarity=0.199 Sum_probs=92.1
Q ss_pred cEEEEEeCCCCCcCh---------HHHHHHhhCCCCCEEEEcCCCCCCcH---------HHHHHHHcCCCCEEEEcCCCC
Q 018902 39 VRIVIVGDVHDDWDL---------QEDSKALQLLKPDLVLFTGDFGNENV---------EIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 39 mril~iSDlH~~~~~---------~~~~~~i~~~~pD~vI~~GDl~~~~~---------~~l~~l~~l~~Pi~~V~GNHD 100 (349)
+||+++||+|..... +.+++.+++.+||+||++||+++... +.++.|.+.++|+++++||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 689999999986442 34556666789999999999997432 345555544699999999999
Q ss_pred CCccccccccchhHHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHH
Q 018902 101 SWKTQEFSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVA 180 (349)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 180 (349)
.... ++ . . .+ .++++|+.+.+
T Consensus 81 ~~~~---------------------------ld----------~---~---------------~~----~~ql~WL~~~L 101 (214)
T cd07399 81 LVLA---------------------------LE----------F---G---------------PR----DEVLQWANEVL 101 (214)
T ss_pred chhh---------------------------CC----------C---C---------------CC----HHHHHHHHHHH
Confidence 2100 00 0 0 00 23457777777
Q ss_pred hCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCc
Q 018902 181 LGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKEL 251 (349)
Q Consensus 181 ~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~ 251 (349)
++.+ +++.|+++|+||...+... +.+..+ .+....++.+.+++++. .++++|++||+|...
T Consensus 102 ~~~~-~~~~iv~~H~p~~~~~~~~-~~~~~~-------~~~~~~~~~~~~ll~~~-~~V~~v~~GH~H~~~ 162 (214)
T cd07399 102 KKHP-DRPAILTTHAYLNCDDSRP-DSIDYD-------SDVNDGQQIWDKLVKKN-DNVFMVLSGHVHGAG 162 (214)
T ss_pred HHCC-CCCEEEEecccccCCCCcC-cccccc-------cccccHHHHHHHHHhCC-CCEEEEEccccCCCc
Confidence 7654 5679999999986442211 110000 01122334566777733 279999999999983
No 24
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.76 E-value=4.3e-17 Score=157.67 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=51.0
Q ss_pred cEEEEEeCCCCCcC-------------hHHHHHHhhCCCCCEEEEcCCCCCCc----------HHHHHHHHcCCCCEEEE
Q 018902 39 VRIVIVGDVHDDWD-------------LQEDSKALQLLKPDLVLFTGDFGNEN----------VEIVQSVAELEFPKAVI 95 (349)
Q Consensus 39 mril~iSDlH~~~~-------------~~~~~~~i~~~~pD~vI~~GDl~~~~----------~~~l~~l~~l~~Pi~~V 95 (349)
|||+|+||+|++.. .+.+++.+++.+||+||++||++|.. .++++.|.+.++|+++|
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I 80 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVL 80 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 79999999999742 13455667788999999999999852 13455666668999999
Q ss_pred cCCCCCCc
Q 018902 96 LGNHDSWK 103 (349)
Q Consensus 96 ~GNHD~~~ 103 (349)
+||||...
T Consensus 81 ~GNHD~~~ 88 (407)
T PRK10966 81 AGNHDSVA 88 (407)
T ss_pred cCCCCChh
Confidence 99999754
No 25
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.75 E-value=2.7e-17 Score=146.71 Aligned_cols=66 Identities=30% Similarity=0.349 Sum_probs=50.0
Q ss_pred EEEEEeCCCCCcCh----------------HHHHHHhhCCCCCEEEEcCCCCCCc-------HHHHHHHHcC---CCCEE
Q 018902 40 RIVIVGDVHDDWDL----------------QEDSKALQLLKPDLVLFTGDFGNEN-------VEIVQSVAEL---EFPKA 93 (349)
Q Consensus 40 ril~iSDlH~~~~~----------------~~~~~~i~~~~pD~vI~~GDl~~~~-------~~~l~~l~~l---~~Pi~ 93 (349)
||+|+||+|++... +++++.+++.+||+||++||+++.. ..+.+.+.++ ++|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 69999999997541 4455666678999999999999842 2344444444 78999
Q ss_pred EEcCCCCCCccc
Q 018902 94 VILGNHDSWKTQ 105 (349)
Q Consensus 94 ~V~GNHD~~~~~ 105 (349)
+++||||.....
T Consensus 81 ~~~GNHD~~~~~ 92 (223)
T cd00840 81 IIAGNHDSPSRL 92 (223)
T ss_pred EecCCCCCcccc
Confidence 999999987643
No 26
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.75 E-value=2.9e-16 Score=135.47 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=45.3
Q ss_pred EEEEEeCCCCCcCh----HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 40 RIVIVGDVHDDWDL----QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 40 ril~iSDlH~~~~~----~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
+|+++||+|.+... +.+.+.++..++|.||++||++. .+.++.+.++..|+++|.||||..
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~--~~~~~~l~~~~~~~~~V~GN~D~~ 65 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCS--KETYDYLKTIAPDVHIVRGDFDEN 65 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCC--HHHHHHHHhhCCceEEEECCCCcc
Confidence 48999999965432 23555555568999999999987 455666655555799999999963
No 27
>PRK09453 phosphodiesterase; Provisional
Probab=99.74 E-value=7.2e-17 Score=139.96 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=52.6
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCC-----------cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNE-----------NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~-----------~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
|||+++||+|++... +++++.+++.++|.|+++||+++. ..++++.|.++..++++|+||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcch
Confidence 799999999987653 556777777899999999999863 2457777877778999999999964
No 28
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.73 E-value=3.3e-16 Score=148.64 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=49.7
Q ss_pred cEEEEEeCCCCCcCh-------------HHHHHHhhCCCCCEEEEcCCCCCCc-------HH-----HHHHHHcCCCCEE
Q 018902 39 VRIVIVGDVHDDWDL-------------QEDSKALQLLKPDLVLFTGDFGNEN-------VE-----IVQSVAELEFPKA 93 (349)
Q Consensus 39 mril~iSDlH~~~~~-------------~~~~~~i~~~~pD~vI~~GDl~~~~-------~~-----~l~~l~~l~~Pi~ 93 (349)
|||+|+||+|++... +++++.+++.+||+||++||++|.. .. +++.|.+.++|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 899999999997431 3455666788999999999999852 11 2344555689999
Q ss_pred EEcCCCCCCc
Q 018902 94 VILGNHDSWK 103 (349)
Q Consensus 94 ~V~GNHD~~~ 103 (349)
+|+||||...
T Consensus 81 ~I~GNHD~~~ 90 (340)
T PHA02546 81 VLVGNHDMYY 90 (340)
T ss_pred EEccCCCccc
Confidence 9999999753
No 29
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=133.19 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=48.1
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcCCCCCCc
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILGNHDSWK 103 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~GNHD~~~ 103 (349)
+|||+++||+|+.... +...+.....++|+||++||++... ....+.. +..++++|.||+|...
T Consensus 1 ~m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~--~~~~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 1 MMKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPF--TLDALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred CcEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCcc--chHHhhcccccceEEEEccCCCcc
Confidence 4899999999999753 4455555678999999999998742 2223333 4678999999999753
No 30
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.72 E-value=2e-16 Score=133.46 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=42.5
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
||+++||+|.+... +++++.++. +|.|+++||+++...... + ....|+++|+||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~~~--~-~~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VDLIIHAGDVLYPGPLNE--L-ELKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CCEEEECCccccccccch--h-hcCCcEEEEeCCCCCc
Confidence 68999999998642 445555433 999999999987543211 2 2367899999999964
No 31
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.71 E-value=8.1e-17 Score=134.07 Aligned_cols=60 Identities=32% Similarity=0.428 Sum_probs=44.2
Q ss_pred EEEEeCCCCCcCh------H-----HHHHHhhCCCCCEEEEcCCCCCCc-----HHHHHHHHcCC---CCEEEEcCCCC
Q 018902 41 IVIVGDVHDDWDL------Q-----EDSKALQLLKPDLVLFTGDFGNEN-----VEIVQSVAELE---FPKAVILGNHD 100 (349)
Q Consensus 41 il~iSDlH~~~~~------~-----~~~~~i~~~~pD~vI~~GDl~~~~-----~~~l~~l~~l~---~Pi~~V~GNHD 100 (349)
|+++||+|++... . .+++.++..++|+|+++||+++.. ..+.+.+.++. .|+++|+||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCe
Confidence 6899999997652 1 245666778999999999999853 22334444443 49999999999
No 32
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.5e-16 Score=152.60 Aligned_cols=67 Identities=30% Similarity=0.361 Sum_probs=52.4
Q ss_pred cEEEEEeCCCCCcCh--------------HHHHHHhhCCCCCEEEEcCCCCCCc----------HHHHHHHHcCCCCEEE
Q 018902 39 VRIVIVGDVHDDWDL--------------QEDSKALQLLKPDLVLFTGDFGNEN----------VEIVQSVAELEFPKAV 94 (349)
Q Consensus 39 mril~iSDlH~~~~~--------------~~~~~~i~~~~pD~vI~~GDl~~~~----------~~~l~~l~~l~~Pi~~ 94 (349)
|||+|+||+|++... ..+++.+...++|+||++||++|.. .+.+++|...++|+|+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 899999999999321 3456677788999999999999852 3455555555799999
Q ss_pred EcCCCCCCccc
Q 018902 95 ILGNHDSWKTQ 105 (349)
Q Consensus 95 V~GNHD~~~~~ 105 (349)
|+||||.....
T Consensus 81 I~GNHD~~~~~ 91 (390)
T COG0420 81 IAGNHDSPSRL 91 (390)
T ss_pred ecCCCCchhcc
Confidence 99999986543
No 33
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.68 E-value=7.4e-16 Score=135.50 Aligned_cols=63 Identities=30% Similarity=0.400 Sum_probs=47.1
Q ss_pred ccEEEEEeCCCCCcCh-------------HHHHHHhhCCCCCEEEEcCCCCCCc----------HHHHHHHHcCCCCEEE
Q 018902 38 VVRIVIVGDVHDDWDL-------------QEDSKALQLLKPDLVLFTGDFGNEN----------VEIVQSVAELEFPKAV 94 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-------------~~~~~~i~~~~pD~vI~~GDl~~~~----------~~~l~~l~~l~~Pi~~ 94 (349)
.|||+++||+|++... ..+.+.++..+||+||++||+++.. .++++.+.+.++|+++
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 81 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAA 81 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEE
Confidence 5899999999996542 1223345567999999999998631 2344555555899999
Q ss_pred EcCCCC
Q 018902 95 ILGNHD 100 (349)
Q Consensus 95 V~GNHD 100 (349)
++||||
T Consensus 82 ~~GNHD 87 (199)
T cd07383 82 TFGNHD 87 (199)
T ss_pred ECccCC
Confidence 999999
No 34
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.68 E-value=4.4e-16 Score=131.00 Aligned_cols=65 Identities=29% Similarity=0.526 Sum_probs=47.9
Q ss_pred cEEEEEeCCCCCcChH-----HHHHHhhCCCCCEEEEcCCCCCCcH---H-H-----HHHHHcCCCCEEEEcCCCCCCc
Q 018902 39 VRIVIVGDVHDDWDLQ-----EDSKALQLLKPDLVLFTGDFGNENV---E-I-----VQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 39 mril~iSDlH~~~~~~-----~~~~~i~~~~pD~vI~~GDl~~~~~---~-~-----l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
|||+++||+|++.... .........++|+||++||+++... . . .........|+++++||||...
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccce
Confidence 7999999999987643 3444555789999999999998631 1 1 2233445899999999999864
No 35
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=1.7e-15 Score=137.95 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=50.7
Q ss_pred cEEEEEeCCCCCcCh-------------HHHHHHhhCCCCCEEEEcCCCCCCc----------HHHHHHHHcCC-CCEEE
Q 018902 39 VRIVIVGDVHDDWDL-------------QEDSKALQLLKPDLVLFTGDFGNEN----------VEIVQSVAELE-FPKAV 94 (349)
Q Consensus 39 mril~iSDlH~~~~~-------------~~~~~~i~~~~pD~vI~~GDl~~~~----------~~~l~~l~~l~-~Pi~~ 94 (349)
|||+|+||+|++... +++++.+.+.+||+||++||++|.. .++++.|.+.. +|+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 899999999997531 3456666778999999999999852 23555666555 89999
Q ss_pred EcCCCCCCc
Q 018902 95 ILGNHDSWK 103 (349)
Q Consensus 95 V~GNHD~~~ 103 (349)
|+||||...
T Consensus 81 i~GNHD~~~ 89 (253)
T TIGR00619 81 ISGNHDSAQ 89 (253)
T ss_pred EccCCCChh
Confidence 999999754
No 36
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.63 E-value=1.6e-14 Score=131.59 Aligned_cols=165 Identities=14% Similarity=0.052 Sum_probs=90.4
Q ss_pred CCCCCEEEEcCCCCCCcH------------HHHHHHHcC--CCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcce
Q 018902 62 LLKPDLVLFTGDFGNENV------------EIVQSVAEL--EFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHV 127 (349)
Q Consensus 62 ~~~pD~vI~~GDl~~~~~------------~~l~~l~~l--~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (349)
..+||+||++|||+|+.. ++.+.+..+ ..|+++||||||+........ ....++.+.++....
T Consensus 43 ~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~---~~~~rf~~~Fg~~~~ 119 (257)
T cd08163 43 QLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVL---PVRQRFEKYFGPTSR 119 (257)
T ss_pred hcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCH---HHHHHHHHHhCCCce
Confidence 469999999999998532 122223222 268999999999865432111 122333334454322
Q ss_pred eeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCC
Q 018902 128 AYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDI 207 (349)
Q Consensus 128 ~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~ 207 (349)
..+.++..++++++..+ .+.. .+ .-...+.+++.+.+...+++.++||++|+|++.... ..
T Consensus 120 ---~~~~~~~~fV~Lds~~l--~~~~----------~~-~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~---~~ 180 (257)
T cd08163 120 ---VIDVGNHTFVILDTISL--SNKD----------DP-DVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPN---TS 180 (257)
T ss_pred ---EEEECCEEEEEEccccc--cCCc----------cc-ccchhHHHHHHhhhhccCCCCcEEEEeccccccCCC---CC
Confidence 23345566666665321 1110 00 001123455666666666778999999999876533 35
Q ss_pred CCC---CCCCCCCC--CCCHH--HHHHHHHHHHhcCCCccEEEeCccCCC
Q 018902 208 CGK---DWGFGGGD--HGDPD--LAQAISLLKETTKLCIPLVVFGHMHKE 250 (349)
Q Consensus 208 ~~~---d~~~~~~~--~G~~~--~~~al~~l~~~~~~~~~lvl~GH~H~~ 250 (349)
||. .+...... +...+ -.+.-+++++. .+|.+||+||+|..
T Consensus 181 cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~--~~P~~vfsGhdH~~ 228 (257)
T cd08163 181 CGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKA--VQPVIAFSGDDHDY 228 (257)
T ss_pred CCCccccCCCCCCCCCccceeecCHHHHHHHHHh--hCCcEEEecCCCcc
Confidence 662 22111111 11110 11334455653 35999999999987
No 37
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.62 E-value=8.5e-14 Score=132.10 Aligned_cols=232 Identities=11% Similarity=0.041 Sum_probs=127.8
Q ss_pred CccEEEEEeCCCCCcChHHHH-----HHhhCCCCCEEEEcCCCCCCc------HHHHHHH-------H-cCCCCEEEEcC
Q 018902 37 SVVRIVIVGDVHDDWDLQEDS-----KALQLLKPDLVLFTGDFGNEN------VEIVQSV-------A-ELEFPKAVILG 97 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~~~~~-----~~i~~~~pD~vI~~GDl~~~~------~~~l~~l-------~-~l~~Pi~~V~G 97 (349)
..++|+.++|.-.+...+..+ +..+..++|+||.+||-++.. .++.+.+ + .+.+|++.|+|
T Consensus 25 ~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLG 104 (394)
T PTZ00422 25 AQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLG 104 (394)
T ss_pred CeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCC
Confidence 458999999998765543332 233467999999999986421 1222222 1 15789999999
Q ss_pred CCCCCccccc--cccchh------------------HHHHHHHHhCCcceee----EE----------eecCCceEEEeC
Q 018902 98 NHDSWKTQEF--SGKKKD------------------GVQLQLECLGEEHVAY----RR----------LDFPTLKLSIVG 143 (349)
Q Consensus 98 NHD~~~~~~~--~~~~~~------------------~~~~~l~~~~~~~~~~----~~----------l~~~~~~i~~~g 143 (349)
|||+....+. .+.... .-++.+. +.++.+ .. .....+.+..++
T Consensus 105 NHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP---~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiD 181 (394)
T PTZ00422 105 QADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMP---NYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFID 181 (394)
T ss_pred cccccCCchhhhccccccccccccccccccccccccCCCccCC---chhheeeeeeecccccccccccCCCCEEEEEEEE
Confidence 9998644321 000000 0000000 000100 00 001112334444
Q ss_pred CeeeecCCchhhhhhhhhhccCC-cchHHHHHHHHHHHhCC-CCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCC-C
Q 018902 144 GRPFSCGGQQIFRKRLLSVRYGV-QDMDESAKRIYKVALGT-PDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDH-G 220 (349)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~-~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~-G 220 (349)
..++.- . +.. +......+++.++++.. ...+++||+.|||.+..| .| +
T Consensus 182 T~~l~~--~-----------~~~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG----------------~hg~ 232 (394)
T PTZ00422 182 TWILSS--S-----------FPYKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSG----------------SSKG 232 (394)
T ss_pred Cchhcc--c-----------CCccccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecC----------------CCCC
Confidence 433321 0 100 01112335566665422 234699999999987653 23 4
Q ss_pred CHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCccccccccc
Q 018902 221 DPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFL 300 (349)
Q Consensus 221 ~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
+.++...|..+++ ++++|++++||.|..+.. ..+++.|+.+|+.-....... .-.+.+.|+
T Consensus 233 ~~~L~~~L~PLL~--ky~VdlYisGHDH~lq~i----------~~~gt~yIvSGaGs~~~~~~~-------~~~~~s~F~ 293 (394)
T PTZ00422 233 DSYLSYYLLPLLK--DAQVDLYISGYDRNMEVL----------TDEGTAHINCGSGGNSGRKSI-------MKNSKSLFY 293 (394)
T ss_pred CHHHHHHHHHHHH--HcCcCEEEEccccceEEe----------cCCCceEEEeCccccccCCCC-------CCCCCccee
Confidence 5788889999999 667999999999998421 225788998887422111000 001123332
Q ss_pred CCCCCCceeeEEEEEEeCCeEeEE
Q 018902 301 RPDSKGTVRAFTVVEILDGRIDKI 324 (349)
Q Consensus 301 ~~~~~~~~~~f~~v~i~~~~v~~~ 324 (349)
....+|..+++...+++..
T Consensus 294 -----~~~~GF~~~~l~~~~l~~~ 312 (394)
T PTZ00422 294 -----SEDIGFCIHELNAEGMVTK 312 (394)
T ss_pred -----cCCCCEEEEEEecCEEEEE
Confidence 2347899999999888663
No 38
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.62 E-value=3.4e-14 Score=132.62 Aligned_cols=201 Identities=15% Similarity=0.172 Sum_probs=111.2
Q ss_pred HHHHHHhhCC--CCCEEEEcCCCCCCc--------------HHHHHHHHc--CCCCEEEEcCCCCCCccccccc----c-
Q 018902 54 QEDSKALQLL--KPDLVLFTGDFGNEN--------------VEIVQSVAE--LEFPKAVILGNHDSWKTQEFSG----K- 110 (349)
Q Consensus 54 ~~~~~~i~~~--~pD~vI~~GDl~~~~--------------~~~l~~l~~--l~~Pi~~V~GNHD~~~~~~~~~----~- 110 (349)
+..++.+++. +||+||++||+++.. ..+.+.+.+ ..+|++.++||||......+.. .
T Consensus 56 ~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~ 135 (296)
T cd00842 56 ESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSW 135 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccH
Confidence 4456666666 999999999998631 112333443 2689999999999876543322 0
Q ss_pred chhHHHHHHHHhCC-------cceeeEEee-cCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhC
Q 018902 111 KKDGVQLQLECLGE-------EHVAYRRLD-FPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALG 182 (349)
Q Consensus 111 ~~~~~~~~l~~~~~-------~~~~~~~l~-~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 182 (349)
....+......... ...+|.... ..++++..++...+..... +.. . ....+...+++|+.++|++
T Consensus 136 ~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~-~~~-----~-~~~~~~~~Ql~WL~~~L~~ 208 (296)
T cd00842 136 LYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNF-WLL-----G-SNETDPAGQLQWLEDELQE 208 (296)
T ss_pred HHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccCh-hhh-----c-cCCCCHHHHHHHHHHHHHH
Confidence 01111111111110 111333333 5666777666643322111 000 0 1233445678888888887
Q ss_pred CC-CCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEE
Q 018902 183 TP-DDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMI 261 (349)
Q Consensus 183 ~~-~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~ 261 (349)
.. ....++|++|+||...+... .+...+.+.+++++++..+.++|+||+|.... +++
T Consensus 209 a~~~~~~v~I~~HiPp~~~~~~~----------------~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~------~~~ 266 (296)
T cd00842 209 AEQAGEKVWIIGHIPPGVNSYDT----------------LENWSERYLQIINRYSDTIAGQFFGHTHRDEF------RVF 266 (296)
T ss_pred HHHCCCeEEEEeccCCCCccccc----------------chHHHHHHHHHHHHHHHhhheeeecccccceE------EEE
Confidence 64 34568899999985431110 02445677778876544478999999999732 111
Q ss_pred EE-----cCCceEEEeecccceeeccC
Q 018902 262 VV-----GADSTIYLNGAIVPRVKRLI 283 (349)
Q Consensus 262 ~~-----~~~gt~yvn~g~~pr~~~~~ 283 (349)
.- .+....++.++..|....++
T Consensus 267 ~~~~~~~~~~~~~~~~psitp~~~~nP 293 (296)
T cd00842 267 YDDNDTGEPINVALIAPSVTPYSGNNP 293 (296)
T ss_pred eCCCCCCCceEEEEecCccCcCCCCCC
Confidence 11 12356677777666654333
No 39
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.62 E-value=8.1e-14 Score=129.26 Aligned_cols=66 Identities=35% Similarity=0.483 Sum_probs=52.7
Q ss_pred cEEEEEeCCCCCc--Ch-----HHHHHHhhCCCCCEEEEcCCCCCCc-----HHHHHHHH--cCCCCEEEEcCCCCCCcc
Q 018902 39 VRIVIVGDVHDDW--DL-----QEDSKALQLLKPDLVLFTGDFGNEN-----VEIVQSVA--ELEFPKAVILGNHDSWKT 104 (349)
Q Consensus 39 mril~iSDlH~~~--~~-----~~~~~~i~~~~pD~vI~~GDl~~~~-----~~~l~~l~--~l~~Pi~~V~GNHD~~~~ 104 (349)
|||++|||+|++. .. .++++.++..+||+||++|||++.. ....+.|. .++.|++++|||||....
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVVPGNHDARVV 80 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCCCceEeeCCCCcCCch
Confidence 6899999999993 21 5567888888999999999999862 33455566 568899999999998654
No 40
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.60 E-value=3e-14 Score=118.33 Aligned_cols=188 Identities=23% Similarity=0.299 Sum_probs=105.7
Q ss_pred cEEEEEeCCCCCcCh---------------HHHHHHhhC--CCCCEEEEcCCCC-----CCcHHHHHHHHcCCCCEEEEc
Q 018902 39 VRIVIVGDVHDDWDL---------------QEDSKALQL--LKPDLVLFTGDFG-----NENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 39 mril~iSDlH~~~~~---------------~~~~~~i~~--~~pD~vI~~GDl~-----~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
|+|..++|+|+.... +++.+..+. ..-|.|++.||+. .++.+-++.+..++-..|.|.
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~LPG~K~m~r 80 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDLPGTKYMIR 80 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhcCChhhEEEecccchhheechhhhhhhhhhhcCCCcEEEEe
Confidence 789999999985321 444444442 3458999999996 345667777888888899999
Q ss_pred CCCCCCccccccccchhHHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcc---hHHHH
Q 018902 97 GNHDSWKTQEFSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQD---MDESA 173 (349)
Q Consensus 97 GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~ 173 (349)
||||++.... . ...+.+...+..+.+ +|.. .+..++|.+.|..+...+. -+.+.| +....
T Consensus 81 GNHDYWw~s~-s-kl~n~lp~~l~~~n~---~f~l-----~n~aI~G~RgW~s~~~~~e-------~~te~Deki~~RE~ 143 (230)
T COG1768 81 GNHDYWWSSI-S-KLNNALPPILFYLNN---GFEL-----LNYAIVGVRGWDSPSFDSE-------PLTEQDEKIFLREI 143 (230)
T ss_pred cCCccccchH-H-HHHhhcCchHhhhcc---ceeE-----eeEEEEEeecccCCCCCcC-------ccchhHHHHHHHHH
Confidence 9999986421 0 001111111111111 1222 1345566665554422110 022211 11223
Q ss_pred HHHHH-HHhCCCC-CCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCc
Q 018902 174 KRIYK-VALGTPD-DHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKEL 251 (349)
Q Consensus 174 ~~l~~-~l~~~~~-~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~ 251 (349)
.++.. ..++.+. -...|||+|+||+..... + .-+.++++ ..+++.+++||+|..+
T Consensus 144 ~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t----------------~-----~~~sevle--e~rv~~~lyGHlHgv~ 200 (230)
T COG1768 144 GRLRLSADAALPKGVSKFIVMTHYPPFSDDGT----------------P-----GPFSEVLE--EGRVSKCLYGHLHGVP 200 (230)
T ss_pred HHHHHHHHHhcccCcCeEEEEEecCCCCCCCC----------------C-----cchHHHHh--hcceeeEEeeeccCCC
Confidence 34433 2233332 345799999999764111 1 12455555 3469999999999987
Q ss_pred ccCCcceEEEEEcCCceEEE
Q 018902 252 AYGNGLRKMIVVGADSTIYL 271 (349)
Q Consensus 252 ~~~~g~~~~~~~~~~gt~yv 271 (349)
+-..|...+ +|+.|.
T Consensus 201 ~p~~~~s~v-----~Gi~y~ 215 (230)
T COG1768 201 RPNIGFSNV-----RGIEYM 215 (230)
T ss_pred CCCCCcccc-----cCceEE
Confidence 655554444 566654
No 41
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.57 E-value=1.8e-13 Score=123.89 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=47.1
Q ss_pred cEEEEEeCCCCCcCh----HHHHHHhh--CCCCCEEEEcCCCCCC----------c---HHHHHHHHcCCCCEEEEcCCC
Q 018902 39 VRIVIVGDVHDDWDL----QEDSKALQ--LLKPDLVLFTGDFGNE----------N---VEIVQSVAELEFPKAVILGNH 99 (349)
Q Consensus 39 mril~iSDlH~~~~~----~~~~~~i~--~~~pD~vI~~GDl~~~----------~---~~~l~~l~~l~~Pi~~V~GNH 99 (349)
||++++||+|++... +.+++.+. ..+||.|+++||+++. . .+.++.+.+.++|+++|+|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 799999999988643 23444443 3689999999999872 1 234455555568999999999
Q ss_pred CCC
Q 018902 100 DSW 102 (349)
Q Consensus 100 D~~ 102 (349)
|..
T Consensus 81 D~~ 83 (241)
T PRK05340 81 DFL 83 (241)
T ss_pred chh
Confidence 974
No 42
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.57 E-value=3.1e-14 Score=116.42 Aligned_cols=55 Identities=29% Similarity=0.424 Sum_probs=38.0
Q ss_pred EEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCC
Q 018902 42 VIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 42 l~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
+++||+|..... +++.. ...++|.++++||+.++..+.+..+ ...|+++|.||||
T Consensus 1 ~viSDtH~~~~~~~~~~~--~~~~~d~ii~~GD~~~~~~~~~~~~--~~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKV--RLEGVDLILSAGDLPKEYLEYLVTM--LNVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHh--hCCCCCEEEECCCCChHHHHHHHHH--cCCCEEEEeCCCc
Confidence 479999965332 11111 2578999999999976554444443 2568999999999
No 43
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.55 E-value=4.6e-14 Score=129.91 Aligned_cols=70 Identities=26% Similarity=0.271 Sum_probs=52.8
Q ss_pred CCccEEEEEeCCCCCcCh---HHHHHHhhCCCCCEEEEcCCCCCC-----cHHHHHHHHcC--CCCEEEEcCCCCCCccc
Q 018902 36 ASVVRIVIVGDVHDDWDL---QEDSKALQLLKPDLVLFTGDFGNE-----NVEIVQSVAEL--EFPKAVILGNHDSWKTQ 105 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~---~~~~~~i~~~~pD~vI~~GDl~~~-----~~~~l~~l~~l--~~Pi~~V~GNHD~~~~~ 105 (349)
..++||+++||+|..... .+.+..+....||+|+++||+++. .....+.|.++ +.++|+|.||||+....
T Consensus 42 ~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~~~ 121 (284)
T COG1408 42 LQGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAPLGVFAVLGNHDYGVDR 121 (284)
T ss_pred cCCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhccCCEEEEeccccccccc
Confidence 466899999999998776 445555666777999999999983 13445555554 56799999999987553
No 44
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.54 E-value=1.3e-13 Score=124.15 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=45.3
Q ss_pred EEEeCCCCCcCh----HHHHHHhhC--CCCCEEEEcCCCCCC-------c------HHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 42 VIVGDVHDDWDL----QEDSKALQL--LKPDLVLFTGDFGNE-------N------VEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 42 l~iSDlH~~~~~----~~~~~~i~~--~~pD~vI~~GDl~~~-------~------~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
+++||+|++... +.+++.+.. .+||+|+++||++|. . .+.++.|.+.+.|+++|+||||..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 799999988642 445666654 379999999999972 1 234555655578999999999974
No 45
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.3e-12 Score=115.45 Aligned_cols=252 Identities=20% Similarity=0.258 Sum_probs=134.6
Q ss_pred CCCCCCCccEEEEEeCCCC--CcChHHH----HHHhhCCCCCEEEEcCCCC-CC------cHHHHHHHH------cCCCC
Q 018902 31 APAMSASVVRIVIVGDVHD--DWDLQED----SKALQLLKPDLVLFTGDFG-NE------NVEIVQSVA------ELEFP 91 (349)
Q Consensus 31 ~~~~~~~~mril~iSDlH~--~~~~~~~----~~~i~~~~pD~vI~~GDl~-~~------~~~~l~~l~------~l~~P 91 (349)
.|+..+..++|++++|.-. .+.+... -+..+..++|+||.+||-+ +. ...+-+.+. .+..|
T Consensus 36 ~p~~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkp 115 (336)
T KOG2679|consen 36 DPAKSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKP 115 (336)
T ss_pred CCCCCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccc
Confidence 3444567799999999964 3332111 1122357999999999944 21 123333333 34679
Q ss_pred EEEEcCCCCCCccccccccchhHHHHHHHHhCCcce---eeEEeecCCceEEEeCCeeee-----cCCchhhhhhhhhhc
Q 018902 92 KAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHV---AYRRLDFPTLKLSIVGGRPFS-----CGGQQIFRKRLLSVR 163 (349)
Q Consensus 92 i~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~i~~~g~~~~~-----~~g~~~~~~~~~~~~ 163 (349)
+|.|.||||+.+.-. +.+...++......+ .|. ++-.-+.+..++.++|. .+....+.-.-...+
T Consensus 116 Wy~vlGNHDyrGnV~------AQls~~l~~~d~RW~c~rsf~-~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR 188 (336)
T KOG2679|consen 116 WYSVLGNHDYRGNVE------AQLSPVLRKIDKRWICPRSFY-VDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPR 188 (336)
T ss_pred hhhhccCccccCchh------hhhhHHHHhhccceecccHHh-hcceeeeeeccccccchhhheecccccccccccCChH
Confidence 999999999876532 112212222111100 010 01111233334444433 111111110000001
Q ss_pred cCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhcCCCccEE
Q 018902 164 YGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHG-DPDLAQAISLLKETTKLCIPLV 242 (349)
Q Consensus 164 ~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G-~~~~~~al~~l~~~~~~~~~lv 242 (349)
..-....+.|+...+++. ..+++||+.|||.... +.|| ..++++.|..+++++ ++|+.
T Consensus 189 --~~~~~~~l~~le~~L~~S-~a~wkiVvGHh~i~S~----------------~~HG~T~eL~~~LlPiL~~n--~VdlY 247 (336)
T KOG2679|consen 189 --VKYLRALLSWLEVALKAS-RAKWKIVVGHHPIKSA----------------GHHGPTKELEKQLLPILEAN--GVDLY 247 (336)
T ss_pred --HHHHHHHHHHHHHHHHHh-hcceEEEecccceehh----------------hccCChHHHHHHHHHHHHhc--CCcEE
Confidence 111223344555555544 4678999999985433 3453 457889999999954 69999
Q ss_pred EeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCccccc-ccccCCCCCCceeeEEEEEEeCCeE
Q 018902 243 VFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNK-TSFLRPDSKGTVRAFTVVEILDGRI 321 (349)
Q Consensus 243 l~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~v~i~~~~v 321 (349)
++||.|.-+....- ..++-|+.+|...+..+...-. -.++++ -+|+-+. .+|.-+++...+.
T Consensus 248 ~nGHDHcLQhis~~--------e~~iqf~tSGagSkaw~g~~~~----~~~~p~~lkF~Ydg-----qGfmsv~is~~e~ 310 (336)
T KOG2679|consen 248 INGHDHCLQHISSP--------ESGIQFVTSGAGSKAWRGTDHN----PEVNPKELKFYYDG-----QGFMSVEISHSEA 310 (336)
T ss_pred EecchhhhhhccCC--------CCCeeEEeeCCcccccCCCccC----CccChhheEEeeCC-----CceEEEEEeccee
Confidence 99999998643311 1467788887765554331100 012222 3443332 5899999987665
Q ss_pred eEEEEEeee
Q 018902 322 DKIAERWII 330 (349)
Q Consensus 322 ~~~~~~~~~ 330 (349)
++ ++++
T Consensus 311 ~v---vfyD 316 (336)
T KOG2679|consen 311 RV---VFYD 316 (336)
T ss_pred EE---EEEe
Confidence 44 5554
No 46
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.5e-11 Score=115.82 Aligned_cols=210 Identities=17% Similarity=0.194 Sum_probs=122.6
Q ss_pred CCCccEEEEEeCCCCCcChHHHHHHhh-CCCCCEEEEcCCCCC----------CcHHHHHHHHcCCCCEEEEcCCCCCCc
Q 018902 35 SASVVRIVIVGDVHDDWDLQEDSKALQ-LLKPDLVLFTGDFGN----------ENVEIVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 35 ~~~~mril~iSDlH~~~~~~~~~~~i~-~~~pD~vI~~GDl~~----------~~~~~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
.+.+.+++++||+-........+.... ..++|+||++|||.- +..+++|.++. .+|+.++.||||...
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As-~vPymv~~GNHE~d~ 222 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIAS-YVPYMVCSGNHEIDW 222 (452)
T ss_pred ccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhc-cCceEEecccccccC
Confidence 346789999999987665433333333 236999999999972 12346666665 789999999999876
Q ss_pred cccccccchhHHHHHHHHhCCc----ceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHH
Q 018902 104 TQEFSGKKKDGVQLQLECLGEE----HVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKV 179 (349)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (349)
..... ...+...+...++. .--|...+...+.+.++++.... +......|-.||.+.
T Consensus 223 ~~~~~---F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~----------------~~~~~~~QY~WL~~d 283 (452)
T KOG1378|consen 223 PPQPC---FVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYY----------------NFLKGTAQYQWLERD 283 (452)
T ss_pred CCccc---ccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccc----------------cccccchHHHHHHHH
Confidence 53210 01111111111110 00122233355555555553211 223344566888888
Q ss_pred HhCCCCC--CeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhcCCCccEEEeCccCCCcccCCc
Q 018902 180 ALGTPDD--HLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDP-DLAQAISLLKETTKLCIPLVVFGHMHKELAYGNG 256 (349)
Q Consensus 180 l~~~~~~--~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~-~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g 256 (349)
|++.++. .+.|++.|.|-+...... .. ..|.+ .+++.|+.++- ++++|++|.||.|...+..+-
T Consensus 284 L~~v~r~~tPWlIv~~HrP~Y~S~~~~--------~~---reG~~~~~~~~LE~l~~--~~~VDvvf~GHvH~YER~~pi 350 (452)
T KOG1378|consen 284 LASVDRKKTPWLIVQGHRPMYCSSNDA--------HY---REGEFESMREGLEPLFV--KYKVDVVFWGHVHRYERFCPI 350 (452)
T ss_pred HHHhcccCCCeEEEEecccceecCCch--------hh---ccCcchhhHHHHHHHHH--HhceeEEEeccceehhccchh
Confidence 8888764 678999998765442110 00 11322 23457888887 567999999999998542211
Q ss_pred ceEE--------EEEcCCceEEEeecccc
Q 018902 257 LRKM--------IVVGADSTIYLNGAIVP 277 (349)
Q Consensus 257 ~~~~--------~~~~~~gt~yvn~g~~p 277 (349)
.... ...++.+++|+..|...
T Consensus 351 yn~~~~~~~~~~~~~d~~aPvyI~~G~~G 379 (452)
T KOG1378|consen 351 YNNTCGTGWGPVHLVDGMAPIYITVGDGG 379 (452)
T ss_pred hcceeeccCCcccccCCCCCEEEEEccCC
Confidence 1111 12355677788777653
No 47
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.40 E-value=3e-12 Score=108.10 Aligned_cols=61 Identities=31% Similarity=0.502 Sum_probs=40.8
Q ss_pred EEEeCCCCCcC-h--------------HHHHHHhhCCCCCEEEEcCCCCCCc--------HHHHHHHHcC-----CCCEE
Q 018902 42 VIVGDVHDDWD-L--------------QEDSKALQLLKPDLVLFTGDFGNEN--------VEIVQSVAEL-----EFPKA 93 (349)
Q Consensus 42 l~iSDlH~~~~-~--------------~~~~~~i~~~~pD~vI~~GDl~~~~--------~~~l~~l~~l-----~~Pi~ 93 (349)
+++||+|+... . +.+.+.++..+||+||++||++++. .+..+.+.++ ..|++
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLH 80 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEE
Confidence 46899998321 1 1223455678999999999999742 1223333322 57999
Q ss_pred EEcCCCCCC
Q 018902 94 VILGNHDSW 102 (349)
Q Consensus 94 ~V~GNHD~~ 102 (349)
+|+||||..
T Consensus 81 ~v~GNHD~~ 89 (156)
T cd08165 81 VVVGNHDIG 89 (156)
T ss_pred EEcCCCCcC
Confidence 999999974
No 48
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.33 E-value=2.8e-10 Score=103.70 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=46.9
Q ss_pred cEEEEEeCCCCCcC-------h---HHHHHHhhCCCCC-EEEEcCCCCCCc--------HHHHHHHHcCCCCEEEEcCCC
Q 018902 39 VRIVIVGDVHDDWD-------L---QEDSKALQLLKPD-LVLFTGDFGNEN--------VEIVQSVAELEFPKAVILGNH 99 (349)
Q Consensus 39 mril~iSDlH~~~~-------~---~~~~~~i~~~~pD-~vI~~GDl~~~~--------~~~l~~l~~l~~Pi~~V~GNH 99 (349)
++|+++||+|+... . ..+++.+++..+| +++.+||+.+.. ...++.++.++. .++++|||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g~-d~~~~GNH 79 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALGY-DAVTIGNH 79 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcCC-CEEeeccc
Confidence 58999999996641 1 4567777777888 779999998642 346777776554 46778999
Q ss_pred CCCc
Q 018902 100 DSWK 103 (349)
Q Consensus 100 D~~~ 103 (349)
|+..
T Consensus 80 e~d~ 83 (252)
T cd00845 80 EFDY 83 (252)
T ss_pred cccc
Confidence 9753
No 49
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.30 E-value=2.8e-11 Score=97.37 Aligned_cols=59 Identities=29% Similarity=0.450 Sum_probs=43.7
Q ss_pred EEEeCCCCCcChHHHH---HHhhCCCCCEEEEcCCCCCCc----H-HH--HHHHHcCCCCEEEEcCCCC
Q 018902 42 VIVGDVHDDWDLQEDS---KALQLLKPDLVLFTGDFGNEN----V-EI--VQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 42 l~iSDlH~~~~~~~~~---~~i~~~~pD~vI~~GDl~~~~----~-~~--l~~l~~l~~Pi~~V~GNHD 100 (349)
+++||+|.+....... ....+.++|+||++||+++.. . .. ...+.....|+++++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence 4799999997753322 455678999999999999752 1 11 2345556899999999999
No 50
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.29 E-value=1.8e-11 Score=109.03 Aligned_cols=61 Identities=25% Similarity=0.422 Sum_probs=47.2
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhh-CCCCCEEEEcCCCCCCc---HHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQ-LLKPDLVLFTGDFGNEN---VEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~-~~~pD~vI~~GDl~~~~---~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
||+++||+|++... +++++.+. ..+.|.++++||++++. .++++.+.+ ..+++|.||||..
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE~~ 81 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHEAM 81 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchHHH
Confidence 89999999999765 55566664 45789999999999854 566666654 2478999999964
No 51
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.28 E-value=4.3e-11 Score=105.92 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=47.1
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhC-CCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCCCCCCc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQL-LKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~-~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
||+++||+|++... +++++.+.. .++|.++++||+++. ..++++.+.. .++++|.||||...
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe~~~ 68 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHEQMA 68 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCChHHH
Confidence 79999999998654 445555543 468999999999985 3566666654 36899999999653
No 52
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.27 E-value=3.1e-11 Score=107.31 Aligned_cols=61 Identities=18% Similarity=0.067 Sum_probs=40.0
Q ss_pred EEEeCCCCCcCh---HHHHHHh-hC---CCCCEEEEcCCCCCCc-----------H---HHHHHHHcCCCCEEEEcCCCC
Q 018902 42 VIVGDVHDDWDL---QEDSKAL-QL---LKPDLVLFTGDFGNEN-----------V---EIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 42 l~iSDlH~~~~~---~~~~~~i-~~---~~pD~vI~~GDl~~~~-----------~---~~l~~l~~l~~Pi~~V~GNHD 100 (349)
++|||+|++... ....... .. .++|.|+++||++|.. . ..+..+...+.++++|+||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 489999998653 2222222 22 4899999999998620 1 112222234789999999999
Q ss_pred CC
Q 018902 101 SW 102 (349)
Q Consensus 101 ~~ 102 (349)
..
T Consensus 81 ~~ 82 (217)
T cd07398 81 FL 82 (217)
T ss_pred HH
Confidence 75
No 53
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.27 E-value=1.1e-09 Score=101.23 Aligned_cols=199 Identities=20% Similarity=0.184 Sum_probs=106.5
Q ss_pred cEEEEEeCCCCCcC-----------------hHHHHHHhhCCCCCEEEE-cCCCCCCc--------------HHHHHHHH
Q 018902 39 VRIVIVGDVHDDWD-----------------LQEDSKALQLLKPDLVLF-TGDFGNEN--------------VEIVQSVA 86 (349)
Q Consensus 39 mril~iSDlH~~~~-----------------~~~~~~~i~~~~pD~vI~-~GDl~~~~--------------~~~l~~l~ 86 (349)
++|++++|+|+... ...+++.+++..+|.+++ +||+++.. ...++.++
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln 80 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMN 80 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHH
Confidence 58999999998631 144567777778898887 99998643 23566777
Q ss_pred cCCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcce---------------eeEEeecC-CceEEEeCCeeeecC
Q 018902 87 ELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHV---------------AYRRLDFP-TLKLSIVGGRPFSCG 150 (349)
Q Consensus 87 ~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~l~~~-~~~i~~~g~~~~~~~ 150 (349)
.++.. ++++||||+.... ..+...++..+...+ .|..++.. ++++.++|-..-.+.
T Consensus 81 ~~g~d-~~~lGNHe~d~g~-------~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~ 152 (277)
T cd07410 81 ALGYD-AGTLGNHEFNYGL-------DYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIP 152 (277)
T ss_pred hcCCC-EEeecccCcccCH-------HHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccc
Confidence 76654 6677999975321 123333433321111 22233445 556655554211100
Q ss_pred CchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 018902 151 GQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISL 230 (349)
Q Consensus 151 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~ 230 (349)
. .............+..+.+.+..+++++ ...+..|+++|.+.... ... .+..+....+
T Consensus 153 ~---~~~~~~~~~~~~~d~~~~~~~~v~~lr~-~~~D~IIvl~H~g~~~~-----------~~~------~~~~~~~~~~ 211 (277)
T cd07410 153 N---WEKPNLIGGLKFTDPVETAKKYVPKLRA-EGADVVVVLAHGGFERD-----------LEE------SLTGENAAYE 211 (277)
T ss_pred c---ccCcccCCCcEEcCHHHHHHHHHHHHHH-cCCCEEEEEecCCcCCC-----------ccc------ccCCccHHHH
Confidence 0 0000000012223344445556666654 23467999999853211 000 0000122234
Q ss_pred HHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeeccc
Q 018902 231 LKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIV 276 (349)
Q Consensus 231 l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~ 276 (349)
++++. .++|+|++||.|..... ... ++++++.+|+-
T Consensus 212 la~~~-~~vD~IlgGHsH~~~~~----~~~-----~~~~v~q~g~~ 247 (277)
T cd07410 212 LAEEV-PGIDAILTGHQHRRFPG----PTV-----NGVPVVQPGNW 247 (277)
T ss_pred HHhcC-CCCcEEEeCCCcccccc----CCc-----CCEEEEcCChh
Confidence 44432 37999999999987321 122 67888888863
No 54
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=99.26 E-value=2e-09 Score=98.79 Aligned_cols=190 Identities=16% Similarity=0.176 Sum_probs=99.3
Q ss_pred cEEEEEeCCCCCcCh-----------------------HHHHHHhhCC-CCCEE-EEcCCCCCCc--------HHHHHHH
Q 018902 39 VRIVIVGDVHDDWDL-----------------------QEDSKALQLL-KPDLV-LFTGDFGNEN--------VEIVQSV 85 (349)
Q Consensus 39 mril~iSDlH~~~~~-----------------------~~~~~~i~~~-~pD~v-I~~GDl~~~~--------~~~l~~l 85 (349)
++|++++|+|+.... ..+++.+++. .+|.+ +.+||+++.. ...++.+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l 80 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDAL 80 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHH
Confidence 479999999995211 3356666666 89977 5699998642 3456666
Q ss_pred HcCCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcce---------------eeEEeecCCceEEEeCCeeeecC
Q 018902 86 AELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHV---------------AYRRLDFPTLKLSIVGGRPFSCG 150 (349)
Q Consensus 86 ~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~l~~~~~~i~~~g~~~~~~~ 150 (349)
+.++ +.++.||||+.... ..+...++..+-..+ .+...+..++++.++|-..-...
T Consensus 81 ~~~g--~da~~GNHefd~g~-------~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~ 151 (264)
T cd07411 81 NALG--VDAMVGHWEFTYGP-------ERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVP 151 (264)
T ss_pred HhhC--CeEEecccccccCH-------HHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcc
Confidence 6644 44444999975322 224444444332111 12233444555555554211110
Q ss_pred CchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 018902 151 GQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISL 230 (349)
Q Consensus 151 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~ 230 (349)
.. ........+...+..+.+.+....+.+....+..|+++|.+.. ++ . .
T Consensus 152 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~-----------------------~~--~---~ 200 (264)
T cd07411 152 IA---NPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVLLSHNGLP-----------------------VD--V---E 200 (264)
T ss_pred cc---cCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEEEecCCch-----------------------hh--H---H
Confidence 00 0000000111123334444443444433445789999998521 11 1 2
Q ss_pred HHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeeccc
Q 018902 231 LKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIV 276 (349)
Q Consensus 231 l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~ 276 (349)
++++. .++|+++.||.|..... ..... ++++++.+|+.
T Consensus 201 la~~~-~~iDlilgGH~H~~~~~--~~~~~-----~~t~v~~~g~~ 238 (264)
T cd07411 201 LAERV-PGIDVILSGHTHERTPK--PIIAG-----GGTLVVEAGSH 238 (264)
T ss_pred HHhcC-CCCcEEEeCcccccccC--ccccc-----CCEEEEEcCcc
Confidence 22322 36999999999976211 11122 67888888863
No 55
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.26 E-value=3.2e-10 Score=102.84 Aligned_cols=62 Identities=21% Similarity=0.316 Sum_probs=43.7
Q ss_pred EEEeCCCCCcCh------HHHHHHhhCC-----CCCEEEEcCCCCCCc-------------------HHHHHHHHcC--C
Q 018902 42 VIVGDVHDDWDL------QEDSKALQLL-----KPDLVLFTGDFGNEN-------------------VEIVQSVAEL--E 89 (349)
Q Consensus 42 l~iSDlH~~~~~------~~~~~~i~~~-----~pD~vI~~GDl~~~~-------------------~~~l~~l~~l--~ 89 (349)
+++||+|++... +.+++.++.. ++|.||++||+++.. ..+.+.+.++ .
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 689999986542 3455666544 569999999999741 1233444444 4
Q ss_pred CCEEEEcCCCCCCc
Q 018902 90 FPKAVILGNHDSWK 103 (349)
Q Consensus 90 ~Pi~~V~GNHD~~~ 103 (349)
+|+++++||||...
T Consensus 82 ~~v~~ipGNHD~~~ 95 (243)
T cd07386 82 IKIIIIPGNHDAVR 95 (243)
T ss_pred CeEEEeCCCCCccc
Confidence 88999999999854
No 56
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.26 E-value=2.7e-11 Score=106.45 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=42.9
Q ss_pred EEEeCCCCCcCh----HHHHHHhhCC--CCCEEEEcCCCCCC----------cHH---HHHHHHcCCCCEEEEcCCCCC
Q 018902 42 VIVGDVHDDWDL----QEDSKALQLL--KPDLVLFTGDFGNE----------NVE---IVQSVAELEFPKAVILGNHDS 101 (349)
Q Consensus 42 l~iSDlH~~~~~----~~~~~~i~~~--~pD~vI~~GDl~~~----------~~~---~l~~l~~l~~Pi~~V~GNHD~ 101 (349)
++|||+|++... .-+++.++.. +.|.+++.||+++. ..+ .++.+++-+.|+|+++||||.
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Df 79 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDF 79 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHH
Confidence 479999999543 3355566654 45999999999862 123 344445558999999999995
No 57
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.23 E-value=2.2e-09 Score=98.26 Aligned_cols=72 Identities=32% Similarity=0.444 Sum_probs=50.6
Q ss_pred CCCCCccEEEEEeCCCCCcCh--------------------HHHH-HHhhCCCCCEEEEcCCCCCCc------HHHHHHH
Q 018902 33 AMSASVVRIVIVGDVHDDWDL--------------------QEDS-KALQLLKPDLVLFTGDFGNEN------VEIVQSV 85 (349)
Q Consensus 33 ~~~~~~mril~iSDlH~~~~~--------------------~~~~-~~i~~~~pD~vI~~GDl~~~~------~~~l~~l 85 (349)
-....++||++++|+|++... ..++ +-+..++||+|+++||+++.. ..+++.+
T Consensus 48 ~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAv 127 (379)
T KOG1432|consen 48 FREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAV 127 (379)
T ss_pred ecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHh
Confidence 344678999999999997541 1123 344468999999999988641 2233333
Q ss_pred H---cCCCCEEEEcCCCCCCcc
Q 018902 86 A---ELEFPKAVILGNHDSWKT 104 (349)
Q Consensus 86 ~---~l~~Pi~~V~GNHD~~~~ 104 (349)
+ ..++|+.++.||||....
T Consensus 128 aP~I~~~IPwA~~lGNHDdes~ 149 (379)
T KOG1432|consen 128 APAIDRKIPWAAVLGNHDDESD 149 (379)
T ss_pred hhHhhcCCCeEEEecccccccc
Confidence 2 338999999999997654
No 58
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.23 E-value=1.1e-09 Score=109.04 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=50.3
Q ss_pred CCCccEEEEEeCCCCCcCh------HHHHHHhh---------CCCCCEEEEcCCCCCCc-------------------HH
Q 018902 35 SASVVRIVIVGDVHDDWDL------QEDSKALQ---------LLKPDLVLFTGDFGNEN-------------------VE 80 (349)
Q Consensus 35 ~~~~mril~iSDlH~~~~~------~~~~~~i~---------~~~pD~vI~~GDl~~~~-------------------~~ 80 (349)
..+.++++++||+|.+... +.+++.++ ..++|.||++||+++.. ..
T Consensus 240 ~~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~ 319 (504)
T PRK04036 240 KDEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEA 319 (504)
T ss_pred CCCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHH
Confidence 3566899999999987641 34566666 56899999999999730 12
Q ss_pred HHHHHHcC--CCCEEEEcCCCCCCc
Q 018902 81 IVQSVAEL--EFPKAVILGNHDSWK 103 (349)
Q Consensus 81 ~l~~l~~l--~~Pi~~V~GNHD~~~ 103 (349)
+.+.|.++ .+|++++|||||...
T Consensus 320 l~~~L~~L~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 320 AAEYLKQIPEDIKIIISPGNHDAVR 344 (504)
T ss_pred HHHHHHhhhcCCeEEEecCCCcchh
Confidence 33444444 578999999999754
No 59
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.22 E-value=2.1e-09 Score=104.03 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCC
Q 018902 170 DESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHK 249 (349)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~ 249 (349)
.++++||.+.|++. +++++||++||||+..+....+. ...+. .....+.+.++++++ .++.+||+||+|.
T Consensus 322 eeQL~WLeqeLa~a-~~k~VVVf~HHPp~s~g~~~~Dp-----~~pg~---~~~n~~eLldLL~~y-pnV~aVfsGHvH~ 391 (496)
T TIGR03767 322 QTQFKWIKDTLRAS-SDTLFVLFSHHTSWSMVNELTDP-----VDPGE---KRHLGTELVSLLLEH-PNVLAWVNGHTHS 391 (496)
T ss_pred HHHHHHHHHHHhcC-CCCCEEEEECCCCcccccccccc-----ccccc---cccCHHHHHHHHhcC-CCceEEEECCcCC
Confidence 45678898888875 45679999999987653322111 00000 001124566677733 2799999999998
Q ss_pred Cc
Q 018902 250 EL 251 (349)
Q Consensus 250 ~~ 251 (349)
..
T Consensus 392 n~ 393 (496)
T TIGR03767 392 NK 393 (496)
T ss_pred Cc
Confidence 73
No 60
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.22 E-value=5.2e-09 Score=95.72 Aligned_cols=185 Identities=20% Similarity=0.193 Sum_probs=101.9
Q ss_pred cEEEEEeCCCCCc-----------ChHHHHHHhhCCCCC-EEEEcCCCCCCc--------HHHHHHHHcCCCCEEEEcCC
Q 018902 39 VRIVIVGDVHDDW-----------DLQEDSKALQLLKPD-LVLFTGDFGNEN--------VEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 39 mril~iSDlH~~~-----------~~~~~~~~i~~~~pD-~vI~~GDl~~~~--------~~~l~~l~~l~~Pi~~V~GN 98 (349)
++|+|++|+|.-. ....+++.+++..+| +++.+||+++.. ...++.++.++.. ++++||
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~d-~~~~GN 79 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGVD-LACFGN 79 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCCc-EEeecc
Confidence 5899999999311 014466777767788 999999998642 3466777766543 668999
Q ss_pred CCCCccccccccchhHHHHHHHHhCCcce-----------------eeEEeecCCceEEEeCCeeeecCCchhhhhhhhh
Q 018902 99 HDSWKTQEFSGKKKDGVQLQLECLGEEHV-----------------AYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLS 161 (349)
Q Consensus 99 HD~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~ 161 (349)
||+.... ..+.+.++..+-..+ .|..++..++++.++|-..-.+.. .. ....
T Consensus 80 Hefd~g~-------~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~--~~--~~~~ 148 (257)
T cd07406 80 HEFDFGE-------DQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLE--TL--TIDP 148 (257)
T ss_pred cccccCH-------HHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccc--cc--cCCC
Confidence 9975321 224444433321111 223333445555555432111000 00 0001
Q ss_pred hccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccE
Q 018902 162 VRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~l 241 (349)
......+..+.+.+..+.+.+. ..+..|+++|.+.. .. ..++++. .++|+
T Consensus 149 ~~~~~~d~~~~~~~~v~~~~~~-~~D~iVvl~H~g~~------------------------~d----~~la~~~-~~iD~ 198 (257)
T cd07406 149 EYVRYRDYVETARELVDELREQ-GADLIIALTHMRLP------------------------ND----KRLAREV-PEIDL 198 (257)
T ss_pred CcceEcCHHHHHHHHHHHHHhC-CCCEEEEEeccCch------------------------hh----HHHHHhC-CCCce
Confidence 1122234445455555555433 34678999998521 00 1233322 36999
Q ss_pred EEeCccCCCcccCCcceEEEEEcCCceEEEeecc
Q 018902 242 VVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAI 275 (349)
Q Consensus 242 vl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~ 275 (349)
|+.||.|... .... ++++++.+|+
T Consensus 199 IlgGH~H~~~-----~~~~-----~~t~vv~~g~ 222 (257)
T cd07406 199 ILGGHDHEYI-----LVQV-----GGTPIVKSGS 222 (257)
T ss_pred EEecccceeE-----eeeE-----CCEEEEeCCc
Confidence 9999999873 1223 6788888776
No 61
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.21 E-value=1.7e-10 Score=98.76 Aligned_cols=61 Identities=25% Similarity=0.226 Sum_probs=45.3
Q ss_pred EEEeCCCCCcCh----------------HHHHHHhhCC--CCCEEEEcCCCCCCcH--HHHHHHHcCCCCEEEEcCCCCC
Q 018902 42 VIVGDVHDDWDL----------------QEDSKALQLL--KPDLVLFTGDFGNENV--EIVQSVAELEFPKAVILGNHDS 101 (349)
Q Consensus 42 l~iSDlH~~~~~----------------~~~~~~i~~~--~pD~vI~~GDl~~~~~--~~l~~l~~l~~Pi~~V~GNHD~ 101 (349)
.++||+|++... +++++.+++. ++|.||++||+++... ...+.+.+++.|+++|+||||.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~l~~~~~~~~~v~GNHD~ 81 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTELELLSRLNGRKHLIKGNHDS 81 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHHHHHHHhCCCCeEEEeCCCCc
Confidence 579999998642 2345555543 7899999999998532 2356677777899999999996
Q ss_pred C
Q 018902 102 W 102 (349)
Q Consensus 102 ~ 102 (349)
.
T Consensus 82 ~ 82 (168)
T cd07390 82 S 82 (168)
T ss_pred h
Confidence 5
No 62
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.20 E-value=1.1e-10 Score=100.06 Aligned_cols=46 Identities=41% Similarity=0.603 Sum_probs=32.9
Q ss_pred HHHhhCCCCCEEEEcCCCCCCc--------HHHHHHHHcC---------CCCEEEEcCCCCCC
Q 018902 57 SKALQLLKPDLVLFTGDFGNEN--------VEIVQSVAEL---------EFPKAVILGNHDSW 102 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~~~~--------~~~l~~l~~l---------~~Pi~~V~GNHD~~ 102 (349)
...++..+||+||++||+++.. .+..+.+.++ .+|+++|+||||..
T Consensus 38 ~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 38 KTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred HHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 3455678999999999999852 1133333222 57899999999975
No 63
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.19 E-value=1.5e-10 Score=103.23 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=49.0
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCC-CCCEEEEcCCCCCCc---HHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLL-KPDLVLFTGDFGNEN---VEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~-~pD~vI~~GDl~~~~---~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
.|++++||+|++... +++++.+... +.|.++++||++|+. .++++.+.+ ..++.|.||||..
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~--~~~~~v~GNHE~~ 83 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEE--HWVRAVRGNHEQM 83 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHc--CCceEeeCchHHH
Confidence 489999999999875 6677777643 689999999999964 567777665 2468999999954
No 64
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.18 E-value=2.7e-10 Score=98.65 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=34.7
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCc-----H---HHHHHHHcC-----CCCEEEEcCCCCCCc
Q 018902 56 DSKALQLLKPDLVLFTGDFGNEN-----V---EIVQSVAEL-----EFPKAVILGNHDSWK 103 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~-----~---~~l~~l~~l-----~~Pi~~V~GNHD~~~ 103 (349)
....++..+||+||++|||+|+. . +.++++.++ .+|+++|+||||...
T Consensus 34 ~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~ 94 (195)
T cd08166 34 YHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGG 94 (195)
T ss_pred HHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCC
Confidence 44566678999999999999852 2 233344332 478999999999763
No 65
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=99.17 E-value=7.3e-09 Score=94.74 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCCcC--------h---HHHHHHhhCCCCCEEEEcCCCCCCc--------HHHHHHHHcCCCCEEEEcCCC
Q 018902 39 VRIVIVGDVHDDWD--------L---QEDSKALQLLKPDLVLFTGDFGNEN--------VEIVQSVAELEFPKAVILGNH 99 (349)
Q Consensus 39 mril~iSDlH~~~~--------~---~~~~~~i~~~~pD~vI~~GDl~~~~--------~~~l~~l~~l~~Pi~~V~GNH 99 (349)
++|++++|+|.... . ..+++.+++.+.++++.+||+++.. ...++.++.++..+ +++|||
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~d~-~~~GNH 79 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGYDA-VTPGNH 79 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCCcE-Eccccc
Confidence 58999999998532 1 3455566544678999999998642 34667777766665 567999
Q ss_pred CCC
Q 018902 100 DSW 102 (349)
Q Consensus 100 D~~ 102 (349)
|+.
T Consensus 80 efd 82 (257)
T cd07408 80 EFD 82 (257)
T ss_pred ccc
Confidence 975
No 66
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=99.17 E-value=6.8e-10 Score=101.28 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=40.2
Q ss_pred EEEEeCCCCCcCh-HHHHHHhh---CCCCCEEEEcCCCCCC---c--------------HHHHHH---HHcCCCCEEEEc
Q 018902 41 IVIVGDVHDDWDL-QEDSKALQ---LLKPDLVLFTGDFGNE---N--------------VEIVQS---VAELEFPKAVIL 96 (349)
Q Consensus 41 il~iSDlH~~~~~-~~~~~~i~---~~~pD~vI~~GDl~~~---~--------------~~~l~~---l~~l~~Pi~~V~ 96 (349)
|++++|+|+.... -+.++.++ ..++|+||+|||+... . .++.+. +.+.+.|+++|.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 5789999997543 11122332 3589999999999731 1 012222 233577889999
Q ss_pred CCCCCC
Q 018902 97 GNHDSW 102 (349)
Q Consensus 97 GNHD~~ 102 (349)
||||..
T Consensus 81 GNHE~~ 86 (262)
T cd00844 81 GNHEAS 86 (262)
T ss_pred CCCCCH
Confidence 999953
No 67
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.12 E-value=8.1e-10 Score=99.63 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=48.2
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhC----------CCCCEEEEcCCCCCC---cHHHHHHHHcC--CCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQL----------LKPDLVLFTGDFGNE---NVEIVQSVAEL--EFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~----------~~pD~vI~~GDl~~~---~~~~l~~l~~l--~~Pi~~V~GNHD~~ 102 (349)
|||+++||+|++... +++++.+.- .+.|.+|++||++|+ ..++++.+.++ ...+++|.||||..
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNHE~~ 80 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNHDNK 80 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCcHHH
Confidence 689999999999875 556666631 136899999999996 35666666543 34688999999963
No 68
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=99.12 E-value=2.1e-08 Score=92.97 Aligned_cols=64 Identities=23% Similarity=0.291 Sum_probs=44.0
Q ss_pred cEEEEEeCCCCCcC-------------------h---HHHHHHhhCCCCC-EEEEcCCCCCC--------cHHHHHHHHc
Q 018902 39 VRIVIVGDVHDDWD-------------------L---QEDSKALQLLKPD-LVLFTGDFGNE--------NVEIVQSVAE 87 (349)
Q Consensus 39 mril~iSDlH~~~~-------------------~---~~~~~~i~~~~pD-~vI~~GDl~~~--------~~~~l~~l~~ 87 (349)
++|++++|+|.... . ...++.+++..++ +++.+||+++. ....++.++.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~ 80 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNL 80 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHh
Confidence 58999999997531 1 3355666666777 45559998864 2456677777
Q ss_pred CCCCEEEEcCCCCCCc
Q 018902 88 LEFPKAVILGNHDSWK 103 (349)
Q Consensus 88 l~~Pi~~V~GNHD~~~ 103 (349)
++..+. ++||||+..
T Consensus 81 ~g~D~~-~lGNHefd~ 95 (281)
T cd07409 81 LGYDAM-TLGNHEFDD 95 (281)
T ss_pred cCCCEE-EeccccccC
Confidence 777644 569999864
No 69
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.12 E-value=1.6e-08 Score=97.16 Aligned_cols=80 Identities=9% Similarity=-0.031 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEEeccCCCCC-CCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCcc
Q 018902 170 DESAKRIYKVALGTPDDHLVILLAHNGPSGL-GSEPNDICGK-DWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHM 247 (349)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~-g~~~~~~~~~-d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~ 247 (349)
.++++||.+.|...+.+++.++++||+|... +....+.+.. +... ...........+|..+++++ .++.+|+|||+
T Consensus 331 ~eQLaWLe~~La~a~a~~p~VVV~hHpPi~t~gi~~md~w~~~~~~~-~~~L~n~~~~~eLlaLL~~h-PnVla~LsGHv 408 (492)
T TIGR03768 331 AKRWDWLKAELARGQADGQLMIIAAHIPIAVSPIGSEMEWWLGAADA-NPDLQNAVSLTGLVTTLQKY-PNLLMWIAGHR 408 (492)
T ss_pred HHHHHHHHHHHHhCcCCCceEEEEeCCCcccCCccchhhhccccccc-cccccccccHHHHHHHHhcC-CCeEEEEcCCc
Confidence 5678999999998876667788888888654 3222121110 0000 00000111123566777754 27999999999
Q ss_pred CCCc
Q 018902 248 HKEL 251 (349)
Q Consensus 248 H~~~ 251 (349)
|...
T Consensus 409 Hrn~ 412 (492)
T TIGR03768 409 HLNT 412 (492)
T ss_pred cccc
Confidence 9873
No 70
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=99.07 E-value=4.1e-09 Score=93.77 Aligned_cols=204 Identities=20% Similarity=0.226 Sum_probs=111.5
Q ss_pred CCccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCC-c----HHHHHHHHcCCC-CEEEEcCCCCCCccccccc
Q 018902 36 ASVVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNE-N----VEIVQSVAELEF-PKAVILGNHDSWKTQEFSG 109 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~-~----~~~l~~l~~l~~-Pi~~V~GNHD~~~~~~~~~ 109 (349)
....|++.+||+|.-.... .+ -..-|+++++||+++- . ..+-+.+.+++- -.++|.|||++.....+..
T Consensus 59 ~~~~r~VcisdtH~~~~~i---~~--~p~gDvlihagdfT~~g~~~ev~~fn~~~gslph~yKIVIaGNHELtFd~ef~~ 133 (305)
T KOG3947|consen 59 PGYARFVCISDTHELTFDI---ND--IPDGDVLIHAGDFTNLGLPEEVIKFNEWLGSLPHEYKIVIAGNHELTFDHEFMA 133 (305)
T ss_pred CCceEEEEecCcccccCcc---cc--CCCCceEEeccCCccccCHHHHHhhhHHhccCcceeeEEEeeccceeecccccc
Confidence 3457999999999875531 11 2577999999999972 2 334445555542 3689999999987653222
Q ss_pred cchh----HH-HHHHHHhC-----C---cceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHH
Q 018902 110 KKKD----GV-QLQLECLG-----E---EHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRI 176 (349)
Q Consensus 110 ~~~~----~~-~~~l~~~~-----~---~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 176 (349)
.... .+ ..-+..++ + ..-.+.+|....+.+. | +.+.|.+|... + .|.......-..+
T Consensus 134 ~~~k~~~~~~~~p~~s~l~P~a~egv~~lLTN~iYLqD~~vtv~--G---~~Iygspw~p~-~----~g~~f~l~rg~~~ 203 (305)
T KOG3947|consen 134 DLIKDEQDAYYFPGVSKLKPEAYEGVQSLLTNCIYLQDSEVTVR--G---VRIYGSPWTPL-L----PGWAFNLPRGQSL 203 (305)
T ss_pred hhhccccceecCccccccCccccccccchhceeEEEecCcEEEE--E---EEEecCCCCcc-c----CchhhhhhhhHhh
Confidence 1000 00 00001111 0 1113345555544432 2 33333333210 0 0000000001122
Q ss_pred HHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCc
Q 018902 177 YKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNG 256 (349)
Q Consensus 177 ~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g 256 (349)
.+....+ ++.-.+|++|.||.+.++... ..++...|+.++-..+++ +.++.+.++||+|.. .|
T Consensus 204 ld~W~~i-p~~iDvL~tHtPPlG~gd~~~-------~~~gqr~GC~ell~tVe~-----rvqpk~hVfGhvhe~----~G 266 (305)
T KOG3947|consen 204 LDKWNQI-PGGIDVLITHTPPLGHGDLVP-------VFSGQRNGCVELLNTVER-----RVQPKYHVFGHVHEG----HG 266 (305)
T ss_pred hHHHhcC-ccccceeccCCCCCCcchhcc-------cccCcccCHHHHHHhHhh-----ccccceEEeeeeecC----ce
Confidence 2333344 355689999999988754422 123445599877665554 235999999999998 45
Q ss_pred ceEEEEEcCCceEEEeeccc
Q 018902 257 LRKMIVVGADSTIYLNGAIV 276 (349)
Q Consensus 257 ~~~~~~~~~~gt~yvn~g~~ 276 (349)
+... +.+.|+|+...
T Consensus 267 vta~-----G~t~fina~~C 281 (305)
T KOG3947|consen 267 VTAD-----GYTTFINAELC 281 (305)
T ss_pred eeec-----CccccccHHHh
Confidence 4332 67889998764
No 71
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=99.07 E-value=1.6e-08 Score=97.44 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=35.2
Q ss_pred CCccEEEEEeCCCCCcCh-------------HHHHHHhhCCCCCEEEEcCCCCCC
Q 018902 36 ASVVRIVIVGDVHDDWDL-------------QEDSKALQLLKPDLVLFTGDFGNE 77 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~-------------~~~~~~i~~~~pD~vI~~GDl~~~ 77 (349)
++.|||++.+|.|.++.. ++++..+...++|+|+..|||+++
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHe 65 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHE 65 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCccccc
Confidence 567999999999998752 556666778899999999999975
No 72
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.02 E-value=4.3e-08 Score=107.10 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=108.5
Q ss_pred CCccEEEEEeCCCCCcCh----HHHHHHhhCCCCCEEEE-cCCCCCCc--------HHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 36 ASVVRIVIVGDVHDDWDL----QEDSKALQLLKPDLVLF-TGDFGNEN--------VEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~----~~~~~~i~~~~pD~vI~-~GDl~~~~--------~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
...++|++++|+|+.... ...++.+++.+||.|++ +||+++.. ...++.++.++. -++++||||+.
T Consensus 658 ~~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg~-d~~~~GNHEfd 736 (1163)
T PRK09419 658 NWELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMGY-DASTFGNHEFD 736 (1163)
T ss_pred ceEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcCC-CEEEecccccc
Confidence 355999999999976432 44667777778998877 99998753 346666766544 36699999985
Q ss_pred ccccccccchhHHHHHHHHhC------------Ccc-----------------eeeEEeecCCceEEEeCCeeeecCCch
Q 018902 103 KTQEFSGKKKDGVQLQLECLG------------EEH-----------------VAYRRLDFPTLKLSIVGGRPFSCGGQQ 153 (349)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~~------------~~~-----------------~~~~~l~~~~~~i~~~g~~~~~~~g~~ 153 (349)
... +.+...+...+ -.. ..|..++..++++.++|-..-.+..
T Consensus 737 ~g~-------~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~-- 807 (1163)
T PRK09419 737 WGP-------DVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAY-- 807 (1163)
T ss_pred cCh-------HHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEeccccccc--
Confidence 432 12333333221 000 0223334444555555432100000
Q ss_pred hhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018902 154 IFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKE 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~ 233 (349)
.............+..+...++.+++++....+..|+++|.+.... . . -+. .....+++
T Consensus 808 -~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d------~-----~-----~~~----~~~~~lA~ 866 (1163)
T PRK09419 808 -KTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQD------R-----T-----TGE----ITGLELAK 866 (1163)
T ss_pred -ccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCcccc------c-----c-----ccc----cHHHHHHH
Confidence 0000000012223444556666677764344567999999853111 0 0 000 11233444
Q ss_pred hcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeeccc
Q 018902 234 TTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIV 276 (349)
Q Consensus 234 ~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~ 276 (349)
+. .++|+++.||+|.... ... ++++++.+|+.
T Consensus 867 ~v-~gIDvIigGHsH~~~~-----~~v-----~~~~ivqag~~ 898 (1163)
T PRK09419 867 KV-KGVDAIISAHTHTLVD-----KVV-----NGTPVVQAYKY 898 (1163)
T ss_pred hC-CCCCEEEeCCCCcccc-----ccC-----CCEEEEeCChh
Confidence 33 2699999999998732 112 57888888764
No 73
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.00 E-value=1.5e-09 Score=96.01 Aligned_cols=62 Identities=27% Similarity=0.355 Sum_probs=45.3
Q ss_pred EEEeCCCCCcCh-HHHHHHhh--------CCCCCEEEEcCCCCCCc---HHHHHHHHcC-------CCCEEEEcCCCCCC
Q 018902 42 VIVGDVHDDWDL-QEDSKALQ--------LLKPDLVLFTGDFGNEN---VEIVQSVAEL-------EFPKAVILGNHDSW 102 (349)
Q Consensus 42 l~iSDlH~~~~~-~~~~~~i~--------~~~pD~vI~~GDl~~~~---~~~l~~l~~l-------~~Pi~~V~GNHD~~ 102 (349)
+++||+|++... +++++.+. ..+.|.+|++||++|+. .++++.+.++ +.++++|+||||..
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 479999999764 55666554 24689999999999863 4455544333 46799999999975
Q ss_pred c
Q 018902 103 K 103 (349)
Q Consensus 103 ~ 103 (349)
.
T Consensus 81 ~ 81 (208)
T cd07425 81 N 81 (208)
T ss_pred H
Confidence 4
No 74
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.98 E-value=2.3e-09 Score=92.04 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=42.9
Q ss_pred EEEeCCCCCcCh------------------HHHHHHhhCCCCCEEEEcCCCCCCc----HH---H--HHHHHcCCCCEEE
Q 018902 42 VIVGDVHDDWDL------------------QEDSKALQLLKPDLVLFTGDFGNEN----VE---I--VQSVAELEFPKAV 94 (349)
Q Consensus 42 l~iSDlH~~~~~------------------~~~~~~i~~~~pD~vI~~GDl~~~~----~~---~--l~~l~~l~~Pi~~ 94 (349)
+++||+|++... +++.+.+++.+||.||++||+++.. .+ . ...+...++|+++
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVIL 80 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEE
Confidence 589999998532 2344555678999999999999742 11 1 1223334789999
Q ss_pred EcCCCCCC
Q 018902 95 ILGNHDSW 102 (349)
Q Consensus 95 V~GNHD~~ 102 (349)
|+||||..
T Consensus 81 i~GNHD~~ 88 (172)
T cd07391 81 IRGNHDGG 88 (172)
T ss_pred EcccCccc
Confidence 99999964
No 75
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.97 E-value=1.3e-07 Score=88.01 Aligned_cols=64 Identities=20% Similarity=0.355 Sum_probs=44.4
Q ss_pred cEEEEEeCCCCCcC---------------hHHHHHHhhCCCCC-EEEEcCCCCCCc---------HHHHHHHHcCCCCEE
Q 018902 39 VRIVIVGDVHDDWD---------------LQEDSKALQLLKPD-LVLFTGDFGNEN---------VEIVQSVAELEFPKA 93 (349)
Q Consensus 39 mril~iSDlH~~~~---------------~~~~~~~i~~~~pD-~vI~~GDl~~~~---------~~~l~~l~~l~~Pi~ 93 (349)
++|++++|+|+... ...+++.+++..++ +++.+||+++.. ...++.++.++.- +
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~D-a 79 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGVD-A 79 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCCe-e
Confidence 48999999997532 13456666655565 899999988642 2356677766655 4
Q ss_pred EEcCCCCCCc
Q 018902 94 VILGNHDSWK 103 (349)
Q Consensus 94 ~V~GNHD~~~ 103 (349)
.++||||+..
T Consensus 80 ~t~GNHefd~ 89 (288)
T cd07412 80 SAVGNHEFDE 89 (288)
T ss_pred eeeccccccc
Confidence 6779999753
No 76
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.93 E-value=4.6e-07 Score=84.12 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=43.0
Q ss_pred cEEEEEeCCCCCcCh-----------HHHHHHhhCC-----CCCEEEEcCCCCCCc--------HHHHHHHHcCCCCEEE
Q 018902 39 VRIVIVGDVHDDWDL-----------QEDSKALQLL-----KPDLVLFTGDFGNEN--------VEIVQSVAELEFPKAV 94 (349)
Q Consensus 39 mril~iSDlH~~~~~-----------~~~~~~i~~~-----~pD~vI~~GDl~~~~--------~~~l~~l~~l~~Pi~~ 94 (349)
++|++++|+|+.... ..+++.+++. +.-+++-+||++... ...++.++.++.-+.
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~Da~- 79 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAM- 79 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCCcEE-
Confidence 579999999996421 3455555432 334899999987532 345566776666544
Q ss_pred EcCCCCCCcc
Q 018902 95 ILGNHDSWKT 104 (349)
Q Consensus 95 V~GNHD~~~~ 104 (349)
++||||+...
T Consensus 80 ~~GNHEfD~G 89 (285)
T cd07405 80 AVGNHEFDNP 89 (285)
T ss_pred eecccccccC
Confidence 5599998643
No 77
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.90 E-value=4.3e-08 Score=80.15 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=44.1
Q ss_pred EEEEEeCCCCCcCh--------------HHHHHHhh-CCCC-CEEEEcCCCCC---CcHHHHHHHHcCCCCEEEEcCCCC
Q 018902 40 RIVIVGDVHDDWDL--------------QEDSKALQ-LLKP-DLVLFTGDFGN---ENVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 40 ril~iSDlH~~~~~--------------~~~~~~i~-~~~p-D~vI~~GDl~~---~~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
.+.++||+|++... +.++.-.+ ..+| |.+.++||++- +..+..+.+.+++-.+..|+||||
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGrkhlv~GNhD 84 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNGRKHLVPGNHD 84 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCCcEEEeeCCCC
Confidence 58899999997532 22333333 3344 78999999984 334555566677778899999999
Q ss_pred CC
Q 018902 101 SW 102 (349)
Q Consensus 101 ~~ 102 (349)
-.
T Consensus 85 k~ 86 (186)
T COG4186 85 KC 86 (186)
T ss_pred CC
Confidence 64
No 78
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.83 E-value=7.6e-07 Score=90.19 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCccEEEEEeCCCCCcCh-----------HHHHHHhhC-----CCCCEEEEcCCCCCC--------cHHHHHHHHcCCCC
Q 018902 36 ASVVRIVIVGDVHDDWDL-----------QEDSKALQL-----LKPDLVLFTGDFGNE--------NVEIVQSVAELEFP 91 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~-----------~~~~~~i~~-----~~pD~vI~~GDl~~~--------~~~~l~~l~~l~~P 91 (349)
...++|++++|+|+.... ..+++.+++ ...-+++.+||++.. ....++.++.++.-
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~D 111 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYD 111 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCCC
Confidence 457899999999997531 234444442 223579999998764 23456667776665
Q ss_pred EEEEcCCCCCCcc
Q 018902 92 KAVILGNHDSWKT 104 (349)
Q Consensus 92 i~~V~GNHD~~~~ 104 (349)
+.++||||+...
T Consensus 112 -a~tlGNHEFD~G 123 (551)
T PRK09558 112 -AMAVGNHEFDNP 123 (551)
T ss_pred -EEcccccccCcC
Confidence 455699997643
No 79
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.79 E-value=1.1e-08 Score=94.08 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=52.6
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhh-CCCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQ-LLKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~-~~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
|++++|||+|++... +++++.+. ..++|.++++||++++ ..++++.+.+++.++++|.||||..
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD~~ 69 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHDLH 69 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChhHH
Confidence 789999999999875 55666664 3478999999999985 4678888887777899999999973
No 80
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.75 E-value=1.1e-06 Score=86.56 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=90.7
Q ss_pred HHHHHHhhC--CCCCEEEEcCCCCCCc-------------HHHHHHHHcC--CCCEEEEcCCCCCCccccccccc-----
Q 018902 54 QEDSKALQL--LKPDLVLFTGDFGNEN-------------VEIVQSVAEL--EFPKAVILGNHDSWKTQEFSGKK----- 111 (349)
Q Consensus 54 ~~~~~~i~~--~~pD~vI~~GDl~~~~-------------~~~l~~l~~l--~~Pi~~V~GNHD~~~~~~~~~~~----- 111 (349)
+..++.+.+ .++|+|+.+||+.... ..+.+.+.+. ++|||...||||..-...+....
T Consensus 198 es~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~ 277 (577)
T KOG3770|consen 198 ESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRH 277 (577)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchh
Confidence 344555553 2499999999998521 1233333333 68999999999986544322211
Q ss_pred -hhHHHHHHHH------------hCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHH
Q 018902 112 -KDGVQLQLEC------------LGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYK 178 (349)
Q Consensus 112 -~~~~~~~l~~------------~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (349)
...+.+.+.. .-.....|..+..+++++..++......... |. .....+...+++|+..
T Consensus 278 ~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~-~L-------~~n~tdp~~~lqWf~~ 349 (577)
T KOG3770|consen 278 SQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNF-WL-------YANQTDPIDQLQWFVD 349 (577)
T ss_pred hhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccce-ee-------eecCCCchHHhhHHHH
Confidence 0001111110 0001123334444777777666532221110 00 0122334445778887
Q ss_pred HHhCCC-CCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCC
Q 018902 179 VALGTP-DDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKE 250 (349)
Q Consensus 179 ~l~~~~-~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~ 250 (349)
++..+. .+..+=+++|.||-. ..|.+.|.. .+-..+.++. .-+...++||+|.-
T Consensus 350 ~L~~ae~~GekVhil~HIPpG~------~~c~~~ws~--------~f~~iv~r~~----~tI~gqf~GH~h~d 404 (577)
T KOG3770|consen 350 QLQEAESAGEKVHILGHIPPGD------GVCLEGWSI--------NFYRIVNRFR----STIAGQFYGHTHID 404 (577)
T ss_pred HHHHHHhcCCEEEEEEeeCCCC------cchhhhhhH--------HHHHHHHHHH----HhhhhhccccCcce
Confidence 777653 345677999998832 334555553 2223344432 34777899999987
No 81
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.74 E-value=2.7e-06 Score=78.71 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=42.3
Q ss_pred CccEEEEEeCCCCCcCh--------------HHHHHHh----hCCCCC-EEEEcCCCCCC----------cHHHHHHHHc
Q 018902 37 SVVRIVIVGDVHDDWDL--------------QEDSKAL----QLLKPD-LVLFTGDFGNE----------NVEIVQSVAE 87 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~--------------~~~~~~i----~~~~pD-~vI~~GDl~~~----------~~~~l~~l~~ 87 (349)
..++|+|++|+|..... .++++.+ ++..++ +++.+||+++. .....+.++.
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~ 83 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRM 83 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHh
Confidence 45899999999975320 2233333 233555 66779998763 1335666665
Q ss_pred CCCCEEEEcCCCCCCc
Q 018902 88 LEFPKAVILGNHDSWK 103 (349)
Q Consensus 88 l~~Pi~~V~GNHD~~~ 103 (349)
++. =++++||||+..
T Consensus 84 mgy-Da~tlGNHEFd~ 98 (282)
T cd07407 84 MPY-DLLTIGNHELYN 98 (282)
T ss_pred cCC-cEEeecccccCc
Confidence 544 378999999853
No 82
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.73 E-value=1.7e-08 Score=87.45 Aligned_cols=42 Identities=31% Similarity=0.332 Sum_probs=29.1
Q ss_pred CCCCCEEEEcCCCCCCc----H-------HHHHHHHcC------------------CCCEEEEcCCCCCCc
Q 018902 62 LLKPDLVLFTGDFGNEN----V-------EIVQSVAEL------------------EFPKAVILGNHDSWK 103 (349)
Q Consensus 62 ~~~pD~vI~~GDl~~~~----~-------~~l~~l~~l------------------~~Pi~~V~GNHD~~~ 103 (349)
..+||.|++.|||+++. . ++.+.+..- .+|++.|+||||...
T Consensus 42 ~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 42 WLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred hcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 57999999999999742 1 122222111 278899999999753
No 83
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.72 E-value=1.9e-06 Score=94.38 Aligned_cols=184 Identities=21% Similarity=0.248 Sum_probs=96.9
Q ss_pred CccEEEEEeCCCCCcCh-----------------HHHHHHhhCCCCCEEEE-cCCCCCCcH-----------------HH
Q 018902 37 SVVRIVIVGDVHDDWDL-----------------QEDSKALQLLKPDLVLF-TGDFGNENV-----------------EI 81 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-----------------~~~~~~i~~~~pD~vI~-~GDl~~~~~-----------------~~ 81 (349)
..++|++++|+|+.... ..+++.+++..++.+++ +||+++... ..
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~ 119 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPM 119 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHH
Confidence 56999999999986321 33566666667776555 999986431 24
Q ss_pred HHHHHcCCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCc--------------ceeeEEeec---------CCce
Q 018902 82 VQSVAELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEE--------------HVAYRRLDF---------PTLK 138 (349)
Q Consensus 82 l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~l~~---------~~~~ 138 (349)
++.++.++.- ++++||||+.... +.+.+.+....-. .-.|..++. .+++
T Consensus 120 i~~mN~lgyD-a~~lGNHEFd~G~-------~~L~~~~~~a~fp~l~aNv~~~~~~~~~~py~I~~~~~~~~~g~~~gvk 191 (1163)
T PRK09419 120 IKAMNALGYD-AGTLGNHEFNYGL-------DFLDGTIKGANFPVLNANVKYKNGKNVYTPYKIKEKTVTDENGKKQGVK 191 (1163)
T ss_pred HHHHhhcCcc-EEeecccccccCH-------HHHHHHHhcCCCCEEEeeeecCCCCcccCCEEEEEEEeeccCCCCCCeE
Confidence 5555554443 5779999975332 1233333221100 012222332 4555
Q ss_pred EEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCC
Q 018902 139 LSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGD 218 (349)
Q Consensus 139 i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~ 218 (349)
+-++|-.+-.+. .| ............+..+.+.+..+++++. ..+..|+++|.+.... .. .
T Consensus 192 IgiiG~~~p~~~--~~-~~~~~~g~~~~~d~v~~~~~~v~~lk~~-gaDvII~l~H~G~~~~-----------~~----~ 252 (1163)
T PRK09419 192 VGYIGFVPPQIM--TW-DKKNLKGKVEVKNIVEEANKTIPEMKKG-GADVIVALAHSGIESE-----------YQ----S 252 (1163)
T ss_pred EEEEecCCcchh--hc-chhhccCcEEECCHHHHHHHHHHHHHhc-CCCEEEEEeccCcCCC-----------CC----C
Confidence 655554321110 01 1111111122345555566666666543 3467899999853111 00 0
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEeCccCCCc
Q 018902 219 HGDPDLAQAISLLKETTKLCIPLVVFGHMHKEL 251 (349)
Q Consensus 219 ~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~ 251 (349)
.|. +.+...++++. .++|+++.||.|...
T Consensus 253 ~~~---en~~~~la~~~-~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 253 SGA---EDSVYDLAEKT-KGIDAIVAGHQHGLF 281 (1163)
T ss_pred CCc---chHHHHHHHhC-CCCcEEEeCCCcccc
Confidence 111 13334455433 379999999999974
No 84
>PHA02239 putative protein phosphatase
Probab=98.67 E-value=3.9e-08 Score=88.50 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=47.1
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCC--CCCEEEEcCCCCCCc---HHHHHHHHcC---CCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLL--KPDLVLFTGDFGNEN---VEIVQSVAEL---EFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~--~pD~vI~~GDl~~~~---~~~l~~l~~l---~~Pi~~V~GNHD~~ 102 (349)
||+++|||+|++... +++++.++.. ..|.||++||++|+. .++++.+.++ +.++++|+||||..
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 689999999987653 5566666433 359999999999963 4455544332 45799999999964
No 85
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.63 E-value=3.9e-07 Score=87.62 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=48.7
Q ss_pred CCCCCCCccEEEEEeCCCCCcCh------HHHHHHhhC-----CCCCEEEEcCCCCCC-------------------cHH
Q 018902 31 APAMSASVVRIVIVGDVHDDWDL------QEDSKALQL-----LKPDLVLFTGDFGNE-------------------NVE 80 (349)
Q Consensus 31 ~~~~~~~~mril~iSDlH~~~~~------~~~~~~i~~-----~~pD~vI~~GDl~~~-------------------~~~ 80 (349)
.+....+.++.+++||+|.+... ..+++.++. .+...++++||++|. ..+
T Consensus 218 ~~~~~~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~ 297 (481)
T COG1311 218 LNNTGDERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEE 297 (481)
T ss_pred CCCCCCcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHH
Confidence 33445677899999999997643 334444442 345789999999873 122
Q ss_pred HHHHHHcC--CCCEEEEcCCCCCCc
Q 018902 81 IVQSVAEL--EFPKAVILGNHDSWK 103 (349)
Q Consensus 81 ~l~~l~~l--~~Pi~~V~GNHD~~~ 103 (349)
+.+.|..+ .+.+++.|||||.-.
T Consensus 298 ~A~~L~~vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 298 LAEFLDQVPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred HHHHHhhCCCCceEEEecCCCCccc
Confidence 33344444 356899999999754
No 86
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.63 E-value=1.5e-07 Score=78.54 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=38.7
Q ss_pred EEEeCCCCCcCh-HHHHHHhh--CCCCCEEEEcCCCCCCcH------HHHHHHHcCCCCEEEEcCCCC
Q 018902 42 VIVGDVHDDWDL-QEDSKALQ--LLKPDLVLFTGDFGNENV------EIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 42 l~iSDlH~~~~~-~~~~~~i~--~~~pD~vI~~GDl~~~~~------~~l~~l~~l~~Pi~~V~GNHD 100 (349)
++++|.|+.... -+-++.++ ..+.|++|++||++.... ++...-.+.++|+|++-|||+
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCCccCCCCEEEECCCCC
Confidence 578999998663 11222222 357899999999985321 222233345788999999996
No 87
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.61 E-value=1.5e-05 Score=72.41 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=46.4
Q ss_pred EEEEEeCCCCCcCh---HHHHHHhh-CCCCCEEEEcCCCCCC----cHHHHHHHHcCCCCEEEEcCCCCCCc
Q 018902 40 RIVIVGDVHDDWDL---QEDSKALQ-LLKPDLVLFTGDFGNE----NVEIVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 40 ril~iSDlH~~~~~---~~~~~~i~-~~~pD~vI~~GDl~~~----~~~~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
||++++|+=+..-. ...++.++ +.++|++|..||.... ..+..+.|..++.-++.+ |||++..
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D~iTl-GNH~fD~ 71 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGVDVITM-GNHTWDK 71 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCCCEEEe-cccccCc
Confidence 68999999886554 33444444 4579999999998653 367888888887776655 9998754
No 88
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.57 E-value=1.5e-05 Score=82.99 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=44.4
Q ss_pred CCccEEEEEeCCCCCcCh-----------------HHHHHHhhCCCC-CEEEEcCCCCCCc-------------------
Q 018902 36 ASVVRIVIVGDVHDDWDL-----------------QEDSKALQLLKP-DLVLFTGDFGNEN------------------- 78 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~-----------------~~~~~~i~~~~p-D~vI~~GDl~~~~------------------- 78 (349)
.-.++|++++|+|..... ..+++.+++..+ -++|.+||+++..
T Consensus 37 ~~~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGspl~~~~~~~~~~~~~~~~~ 116 (780)
T PRK09418 37 TVNLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDP 116 (780)
T ss_pred ceEEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCchHHHHHhhccccccccccc
Confidence 346899999999996321 234566654444 4899999998642
Q ss_pred ---HHHHHHHHcCCCCEEEEcCCCCCCc
Q 018902 79 ---VEIVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 79 ---~~~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
...++.++.++.- ++.+||||+..
T Consensus 117 ~~~~p~i~~mN~lgyD-a~tlGNHEFdy 143 (780)
T PRK09418 117 SYTHPLYRLMNLMKYD-VISLGNHEFNY 143 (780)
T ss_pred ccchHHHHHHhccCCC-EEecccccccc
Confidence 1244555554443 68899999754
No 89
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.57 E-value=3.7e-06 Score=79.01 Aligned_cols=65 Identities=20% Similarity=0.098 Sum_probs=43.2
Q ss_pred cEEEEEeCCCCCcCh-------HHHHHHhhCC----C-CCEEEEcCCCCCC----------------cHHHHHHHHcCCC
Q 018902 39 VRIVIVGDVHDDWDL-------QEDSKALQLL----K-PDLVLFTGDFGNE----------------NVEIVQSVAELEF 90 (349)
Q Consensus 39 mril~iSDlH~~~~~-------~~~~~~i~~~----~-pD~vI~~GDl~~~----------------~~~~l~~l~~l~~ 90 (349)
++|+|++|+|..... ..+++.+++. . .-+++.+||+++. ....++.++.++.
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~ 80 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGV 80 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCC
Confidence 579999999997531 2345555432 3 3489999998763 2245566665554
Q ss_pred CEEEEcCCCCCCcc
Q 018902 91 PKAVILGNHDSWKT 104 (349)
Q Consensus 91 Pi~~V~GNHD~~~~ 104 (349)
- ++.+||||+...
T Consensus 81 D-a~tlGNHEFD~G 93 (313)
T cd08162 81 Q-AIALGNHEFDLG 93 (313)
T ss_pred c-EEeccccccccC
Confidence 3 678999997543
No 90
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.55 E-value=5.8e-06 Score=83.21 Aligned_cols=204 Identities=20% Similarity=0.159 Sum_probs=106.7
Q ss_pred CCCCccEEEEEeCCCCCcC------------h----HHHHHHhhCCC-CCEEEEcCCCCCC---------cHHHHHHHHc
Q 018902 34 MSASVVRIVIVGDVHDDWD------------L----QEDSKALQLLK-PDLVLFTGDFGNE---------NVEIVQSVAE 87 (349)
Q Consensus 34 ~~~~~mril~iSDlH~~~~------------~----~~~~~~i~~~~-pD~vI~~GDl~~~---------~~~~l~~l~~ 87 (349)
...-.++|+|++|+|.... . ..+++.+++.. ..++|-+||+.+. ....++.++.
T Consensus 22 ~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~ 101 (517)
T COG0737 22 AETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNA 101 (517)
T ss_pred cCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhh
Confidence 3355689999999999765 1 23455665544 4679999999874 2346666766
Q ss_pred CCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCc----------------ceeeEEeecCCceEEEeCCee-eecC
Q 018902 88 LEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEE----------------HVAYRRLDFPTLKLSIVGGRP-FSCG 150 (349)
Q Consensus 88 l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~l~~~~~~i~~~g~~~-~~~~ 150 (349)
++.- +...||||+..... .+.+.+....-. .-.|..++.+++++.++|-.. +...
T Consensus 102 m~yD-a~tiGNHEFd~g~~-------~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~ 173 (517)
T COG0737 102 LGYD-AMTLGNHEFDYGLE-------ALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPT 173 (517)
T ss_pred cCCc-EEeecccccccCHH-------HHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccc
Confidence 5443 67889999875431 122222221111 013444555666777676431 1100
Q ss_pred CchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 018902 151 GQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISL 230 (349)
Q Consensus 151 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~ 230 (349)
|.... ........+..+.+.++.+++++.. -+..|+++|.+....... .+... +. +.
T Consensus 174 ---~~~~~-~~~~~~f~d~~e~~~~~i~elk~~~-vD~iI~LsH~G~~~d~~~-------~~~~~----~~------~~- 230 (517)
T COG0737 174 ---WEKPN-AIEGVTFRDPIEAAKKYIPELKGEG-VDVIIALSHLGIEDDLEL-------ASEVP----GD------VD- 230 (517)
T ss_pred ---ccccc-ccCCcEEcCHHHHHHHHHHHHHhcC-CCEEEEEeccCcCccccc-------ccccc----cc------cc-
Confidence 00000 0011222344455555666666543 457899999864221000 00000 00 00
Q ss_pred HHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeeccc
Q 018902 231 LKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIV 276 (349)
Q Consensus 231 l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~ 276 (349)
.. ..++|+++.||.|............ ++++++.+|..
T Consensus 231 ~~---~~~iD~i~~GH~H~~~~~~~~~~~~-----~~t~ivqag~~ 268 (517)
T COG0737 231 VA---VPGIDLIIGGHSHTVFPGGDKPGTV-----NGTPIVQAGEY 268 (517)
T ss_pred cc---ccCcceEeccCCcccccCCcccCcc-----CCEEEEccChh
Confidence 00 0139999999999652111100112 57888888864
No 91
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.55 E-value=4.5e-07 Score=86.23 Aligned_cols=72 Identities=28% Similarity=0.335 Sum_probs=49.2
Q ss_pred CCccEEEEEeCCCCCc------------------ChHHHHHHhh-CCCCCEEEEcCCCCCCc--------HHHHHHHHcC
Q 018902 36 ASVVRIVIVGDVHDDW------------------DLQEDSKALQ-LLKPDLVLFTGDFGNEN--------VEIVQSVAEL 88 (349)
Q Consensus 36 ~~~mril~iSDlH~~~------------------~~~~~~~~i~-~~~pD~vI~~GDl~~~~--------~~~l~~l~~l 88 (349)
...+|++.++|.|+-- .+.+...... -.+||++++.|||+|+. .+..+++.++
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 4568999999999832 0122222222 46999999999999952 2234444443
Q ss_pred -----CCCEEEEcCCCCCCccccc
Q 018902 89 -----EFPKAVILGNHDSWKTQEF 107 (349)
Q Consensus 89 -----~~Pi~~V~GNHD~~~~~~~ 107 (349)
.+|++.|+||||.......
T Consensus 126 f~~k~~~~~~~i~GNhDIGf~~~~ 149 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGFGNEL 149 (410)
T ss_pred hCCCCCCeeEEeCCcccccccccc
Confidence 5789999999999876543
No 92
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.51 E-value=2.3e-05 Score=81.79 Aligned_cols=66 Identities=23% Similarity=0.203 Sum_probs=44.6
Q ss_pred ccEEEEEeCCCCCcCh-----------------HHHHHHhhCCCC-CEEEEcCCCCCCc-----------------HHHH
Q 018902 38 VVRIVIVGDVHDDWDL-----------------QEDSKALQLLKP-DLVLFTGDFGNEN-----------------VEIV 82 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-----------------~~~~~~i~~~~p-D~vI~~GDl~~~~-----------------~~~l 82 (349)
.++|++++|+|..... ..+++.+++..+ -++|.+||++... ...+
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i 194 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMY 194 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHH
Confidence 5899999999986321 224566655444 3799999988641 1256
Q ss_pred HHHHcCCCCEEEEcCCCCCCcc
Q 018902 83 QSVAELEFPKAVILGNHDSWKT 104 (349)
Q Consensus 83 ~~l~~l~~Pi~~V~GNHD~~~~ 104 (349)
+.++.++.- ...+||||+...
T Consensus 195 ~amN~LGyD-A~tLGNHEFDyG 215 (814)
T PRK11907 195 AALEALGFD-AGTLGNHEFNYG 215 (814)
T ss_pred HHHhccCCC-EEEechhhcccC
Confidence 666665543 688999997643
No 93
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.51 E-value=1.9e-07 Score=83.47 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=45.6
Q ss_pred EEEEEeCCCCCcCh--------------HH----HHHHhhCCCCCEEEEcCCCCCC------cHHHHHHHHcCCCCEEEE
Q 018902 40 RIVIVGDVHDDWDL--------------QE----DSKALQLLKPDLVLFTGDFGNE------NVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 40 ril~iSDlH~~~~~--------------~~----~~~~i~~~~pD~vI~~GDl~~~------~~~~l~~l~~l~~Pi~~V 95 (349)
+.+++||+|++... .+ +.+.+...+||.||++||+++. ..++.+.+.++..++++|
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~V 95 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLILI 95 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEEE
Confidence 58999999997532 12 2333445689999999999863 223445666667799999
Q ss_pred cCCCCCC
Q 018902 96 LGNHDSW 102 (349)
Q Consensus 96 ~GNHD~~ 102 (349)
+||||..
T Consensus 96 ~GNHD~~ 102 (225)
T TIGR00024 96 RGNHDAL 102 (225)
T ss_pred CCCCCCc
Confidence 9999964
No 94
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=98.50 E-value=1.9e-07 Score=85.29 Aligned_cols=64 Identities=27% Similarity=0.403 Sum_probs=51.9
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhh-CCCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQ-LLKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~-~~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
|++.+|||+|++... +++++.+. ....|.++++||++++ ..++++.+.+++..++.|.||||..
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD~~ 69 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHDLH 69 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhHHH
Confidence 578999999999875 67788776 3467999999999986 4577777777666678999999963
No 95
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=98.48 E-value=2.4e-07 Score=84.27 Aligned_cols=62 Identities=26% Similarity=0.388 Sum_probs=50.0
Q ss_pred EEEEeCCCCCcCh-HHHHHHhhC-CCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 41 IVIVGDVHDDWDL-QEDSKALQL-LKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 41 il~iSDlH~~~~~-~~~~~~i~~-~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
+.+|||+|++... +++++.+.- .+.|.++++||++++ ..++++.+.++...++.|+||||..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD~~ 67 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHDLH 67 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCchHH
Confidence 3689999999765 667777753 368999999999986 4677888777766799999999964
No 96
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=4.2e-05 Score=62.24 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCccccccc
Q 018902 219 HGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTS 298 (349)
Q Consensus 219 ~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~ 298 (349)
||+++.-..|.+ +-.+|..+.||+|....| +. +|..|+|||+...... +|+..
T Consensus 93 ~gd~~sL~~LaR-----qldvDILl~G~Th~f~Ay-----e~-----eg~ffvnPGSaTGAfn-----------~~~t~- 145 (183)
T KOG3325|consen 93 WGDPESLALLAR-----QLDVDILLTGHTHKFEAY-----EH-----EGKFFVNPGSATGAFN-----------VSDTD- 145 (183)
T ss_pred CCCHHHHHHHHH-----hcCCcEEEeCCceeEEEE-----Ee-----CCcEEeCCCcccCCCc-----------ccccC-
Confidence 566755444443 446999999999998332 23 6899999998633221 11111
Q ss_pred ccCCCCCCceeeEEEEEEeCCeEeEEEEEeee
Q 018902 299 FLRPDSKGTVRAFTVVEILDGRIDKIAERWII 330 (349)
Q Consensus 299 ~~~~~~~~~~~~f~~v~i~~~~v~~~~~~~~~ 330 (349)
.-.++|++.+|....++.+..+.++
T Consensus 146 -------~~~PSFvLmDiqg~~~v~YvY~lid 170 (183)
T KOG3325|consen 146 -------IIVPSFVLMDIQGSTVVTYVYRLID 170 (183)
T ss_pred -------CCCCceEEEEecCCEEEEEEeeeeC
Confidence 1346899999999999888877765
No 97
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.44 E-value=3.7e-05 Score=78.89 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=43.2
Q ss_pred ccEEEEEeCCCCCcCh-----------------HHHHHHhhCCCC-CEEEEcCCCCCCc----------------HHHHH
Q 018902 38 VVRIVIVGDVHDDWDL-----------------QEDSKALQLLKP-DLVLFTGDFGNEN----------------VEIVQ 83 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-----------------~~~~~~i~~~~p-D~vI~~GDl~~~~----------------~~~l~ 83 (349)
.++|++++|+|..... ..+++.+++..+ -++|-+||+++.. ...++
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~ 81 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYK 81 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHH
Confidence 4799999999996321 234555554433 4789999988742 12455
Q ss_pred HHHcCCCCEEEEcCCCCCCc
Q 018902 84 SVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 84 ~l~~l~~Pi~~V~GNHD~~~ 103 (349)
.++.++.- ...+||||+..
T Consensus 82 ~mN~lgyD-a~tlGNHEFd~ 100 (626)
T TIGR01390 82 AMNLLKYD-VGNLGNHEFNY 100 (626)
T ss_pred HHhhcCcc-EEecccccccc
Confidence 56655443 58899999754
No 98
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=98.42 E-value=3.6e-07 Score=82.94 Aligned_cols=64 Identities=23% Similarity=0.370 Sum_probs=46.3
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhC---------CCCCEEEEcCCCCCCc---HHHHHHHHcC--CCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQL---------LKPDLVLFTGDFGNEN---VEIVQSVAEL--EFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~---------~~pD~vI~~GDl~~~~---~~~l~~l~~l--~~Pi~~V~GNHD~~ 102 (349)
||+.+|||+|++... +++++.+.- .+-|.+|++||++|+. .++++.+.++ ...+++|.||||..
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHCNK 79 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccHHH
Confidence 689999999998764 556665532 1347999999999963 4555544433 34699999999953
No 99
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.39 E-value=6.1e-05 Score=77.51 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=44.7
Q ss_pred CccEEEEEeCCCCCcCh-----------------HHHHHHhhCCCC-CEEEEcCCCCCCcH----------------HHH
Q 018902 37 SVVRIVIVGDVHDDWDL-----------------QEDSKALQLLKP-DLVLFTGDFGNENV----------------EIV 82 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-----------------~~~~~~i~~~~p-D~vI~~GDl~~~~~----------------~~l 82 (349)
..++|++++|+|..... ..+++.+++..+ -++|-+||+++... ..+
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i 103 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVY 103 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHH
Confidence 46999999999986321 335566654444 47899999987421 245
Q ss_pred HHHHcCCCCEEEEcCCCCCCc
Q 018902 83 QSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 83 ~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
+.++.++. =...+||||+..
T Consensus 104 ~amN~lgy-Da~tlGNHEFd~ 123 (649)
T PRK09420 104 KAMNTLDY-DVGNLGNHEFNY 123 (649)
T ss_pred HHHHhcCC-cEEeccchhhhc
Confidence 66666554 368899999754
No 100
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.36 E-value=2.2e-05 Score=71.74 Aligned_cols=185 Identities=14% Similarity=0.161 Sum_probs=101.7
Q ss_pred cEEEEEeCCCCCcCh---HHHHHHhh-CCCCCEEEEcCCCCCC----cHHHHHHHHcCCCCEEEEcCCCCCCcccccccc
Q 018902 39 VRIVIVGDVHDDWDL---QEDSKALQ-LLKPDLVLFTGDFGNE----NVEIVQSVAELEFPKAVILGNHDSWKTQEFSGK 110 (349)
Q Consensus 39 mril~iSDlH~~~~~---~~~~~~i~-~~~pD~vI~~GDl~~~----~~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~ 110 (349)
|||++++|+=+..-. ...+..++ +.++|++|..||.... ..+..+.|.+.++-++.+ |||.+.......
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~-GNH~~Dkge~~~-- 77 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITM-GNHTWFQKLILD-- 77 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEc-cchhccCcHHHH--
Confidence 799999999876432 33444444 4578999999998753 367888898888887777 999975432000
Q ss_pred chhHHHHHHHHhC----CcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCC
Q 018902 111 KKDGVQLQLECLG----EEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDD 186 (349)
Q Consensus 111 ~~~~~~~~l~~~~----~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 186 (349)
......+.++... ....++..++.++.++.+++. .|..+. . .+..++.....+++.+.+++. .
T Consensus 78 ~i~~~~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl-----~G~~fm-~-----~~~~~~Pf~~~d~~i~~lk~~--~ 144 (266)
T TIGR00282 78 VVINQKDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNL-----QGTSVN-L-----PFKTTNPFKVLKELINMLKKD--C 144 (266)
T ss_pred HHhccccccccCCCCCCCCCCCcEEEEECCEEEEEEEC-----CCcccC-C-----ccccCCHHHHHHHHHHhhhcC--C
Confidence 0000001111111 001122333333434433332 121110 0 011233333445555554432 3
Q ss_pred CeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCC
Q 018902 187 HLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGAD 266 (349)
Q Consensus 187 ~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~ 266 (349)
+..||..|..- .--.+++..+++ .++++|+.-|+|-.. .-.++ =++
T Consensus 145 d~IIVd~Haea------------------------tsEK~a~~~~ld---g~vsaVvGtHtHV~T----aD~~i---l~~ 190 (266)
T TIGR00282 145 DLIFVDFHAET------------------------TSEKNAFGMAFD---GYVTAVVGTHTHVPT----ADLRI---LPK 190 (266)
T ss_pred CEEEEEeCCCC------------------------HHHHHHHHHHhC---CCccEEEeCCCCCCC----Cccee---CCC
Confidence 57889999731 122356666775 479999999999983 22233 236
Q ss_pred ceEEEee
Q 018902 267 STIYLNG 273 (349)
Q Consensus 267 gt~yvn~ 273 (349)
||.|+.-
T Consensus 191 gtayitD 197 (266)
T TIGR00282 191 GTAYITD 197 (266)
T ss_pred CCEEEec
Confidence 8888754
No 101
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.33 E-value=3.4e-05 Score=78.14 Aligned_cols=65 Identities=22% Similarity=0.232 Sum_probs=42.9
Q ss_pred cEEEEEeCCCCCcCh----------------------HHHHHHhhCCCC-CEEEEcCCCCCCc--------HHHHHHHHc
Q 018902 39 VRIVIVGDVHDDWDL----------------------QEDSKALQLLKP-DLVLFTGDFGNEN--------VEIVQSVAE 87 (349)
Q Consensus 39 mril~iSDlH~~~~~----------------------~~~~~~i~~~~p-D~vI~~GDl~~~~--------~~~l~~l~~ 87 (349)
++|+|++|+|+.... ...++.+++..+ -+++.+||.+... ...++.++.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~ 80 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNA 80 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhc
Confidence 579999999985311 223555554444 4788999987642 335666665
Q ss_pred CCCCEEEEcCCCCCCcc
Q 018902 88 LEFPKAVILGNHDSWKT 104 (349)
Q Consensus 88 l~~Pi~~V~GNHD~~~~ 104 (349)
++. -+.++||||+...
T Consensus 81 ~g~-Da~~lGNHEFd~G 96 (550)
T TIGR01530 81 AGF-DFFTLGNHEFDAG 96 (550)
T ss_pred cCC-CEEEeccccccCC
Confidence 544 3789999997643
No 102
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=98.30 E-value=1e-06 Score=78.72 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=45.7
Q ss_pred EEEeCCCCCcCh-HHHHHHhhCC--------CCCEEEEcCCCCCC---cHHHHHHHHcC--CCCEEEEcCCCCCC
Q 018902 42 VIVGDVHDDWDL-QEDSKALQLL--------KPDLVLFTGDFGNE---NVEIVQSVAEL--EFPKAVILGNHDSW 102 (349)
Q Consensus 42 l~iSDlH~~~~~-~~~~~~i~~~--------~pD~vI~~GDl~~~---~~~~l~~l~~l--~~Pi~~V~GNHD~~ 102 (349)
.+|||+|++... +++++.+... ..|.+|++||++|+ ..++++.+.++ +..+++|.||||..
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcHH
Confidence 689999999875 5666766422 46899999999986 35666666554 23589999999964
No 103
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=98.28 E-value=1.2e-06 Score=78.30 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=47.5
Q ss_pred EEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCC---cHHHHHHHHcC---CCCEEEEcCCCCCCc
Q 018902 42 VIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNE---NVEIVQSVAEL---EFPKAVILGNHDSWK 103 (349)
Q Consensus 42 l~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~---~~~~l~~l~~l---~~Pi~~V~GNHD~~~ 103 (349)
.++||+|++... .++++.+...+.|.+|++||++++ ..++++.+..+ +.++++|.||||...
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~~~ 69 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHEDML 69 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchhhh
Confidence 379999998654 456666666688999999999985 45666666655 347999999999753
No 104
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=98.20 E-value=2.7e-06 Score=78.10 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=46.0
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhC------CCCCEEEEcCCCCCCc---HHHHHHHHcCC-----CCEEEEcCCCCCCc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQL------LKPDLVLFTGDFGNEN---VEIVQSVAELE-----FPKAVILGNHDSWK 103 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~------~~pD~vI~~GDl~~~~---~~~l~~l~~l~-----~Pi~~V~GNHD~~~ 103 (349)
++++|||+|++... +++++.+.. ...+.+|++||++|+. .++++.|..+. ..++++.||||...
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~ 81 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAF 81 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHH
Confidence 69999999999875 555555542 2357899999999964 55666555442 14789999999653
No 105
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=98.05 E-value=2.4e-05 Score=72.36 Aligned_cols=64 Identities=27% Similarity=0.362 Sum_probs=41.5
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhh---CCCCCEEEEcCCCCC---C-----------cH---HHHHHHH---cCCCCEEE
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQ---LLKPDLVLFTGDFGN---E-----------NV---EIVQSVA---ELEFPKAV 94 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~---~~~pD~vI~~GDl~~---~-----------~~---~~l~~l~---~l~~Pi~~ 94 (349)
|||++-+=.|+..+. -+.+..+. ..++|++|+|||+.. . .. .+.+-.+ +.++|.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 789999999998664 22233333 359999999999852 1 01 1222211 23677889
Q ss_pred EcCCCCCC
Q 018902 95 ILGNHDSW 102 (349)
Q Consensus 95 V~GNHD~~ 102 (349)
|-|||+..
T Consensus 81 IGGNHEAs 88 (456)
T KOG2863|consen 81 IGGNHEAS 88 (456)
T ss_pred ecCchHHH
Confidence 99999964
No 106
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.00 E-value=1.4e-05 Score=70.93 Aligned_cols=62 Identities=24% Similarity=0.413 Sum_probs=42.9
Q ss_pred cEEEEEeCCCCCcCh--------------HH----HHHHhhCCCCCEEEEcCCCCCCc-----------HHHHHHHHcCC
Q 018902 39 VRIVIVGDVHDDWDL--------------QE----DSKALQLLKPDLVLFTGDFGNEN-----------VEIVQSVAELE 89 (349)
Q Consensus 39 mril~iSDlH~~~~~--------------~~----~~~~i~~~~pD~vI~~GDl~~~~-----------~~~l~~l~~l~ 89 (349)
-+.+++||+|.+... ++ +.+.+...+|+.+|+.||+.++. ..+++.+.. .
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~-~ 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDE-R 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhcc-C
Confidence 479999999998642 11 22345578999999999998642 123333332 2
Q ss_pred CCEEEEcCCCCCC
Q 018902 90 FPKAVILGNHDSW 102 (349)
Q Consensus 90 ~Pi~~V~GNHD~~ 102 (349)
-+++|.||||..
T Consensus 99 -evi~i~GNHD~~ 110 (235)
T COG1407 99 -EVIIIRGNHDNG 110 (235)
T ss_pred -cEEEEeccCCCc
Confidence 499999999965
No 107
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=97.67 E-value=6.7e-05 Score=69.07 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=47.5
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCcc
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWKT 104 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~~ 104 (349)
.+++++||+|++... .++++.+.....+-+|+.||++|+. .+.+..+..+ +..++.+.||||....
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~~~ 101 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRSM 101 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHHHH
Confidence 579999999999764 4455555555678999999999964 4444443322 4468999999998543
No 108
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=97.63 E-value=0.00011 Score=68.78 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=45.6
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCC
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSW 102 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~ 102 (349)
++.++||+|++... .++++.......|-+|++||++|+. .+.+..+..+ +..++.+.||||..
T Consensus 44 ~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 59999999999764 4455544444568999999999964 4444444333 34589999999975
No 109
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.59 E-value=0.0034 Score=57.17 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCcCh------HHHHHHhhC-----------CCCCEEEEcCCCCCCc---------------------HH-
Q 018902 40 RIVIVGDVHDDWDL------QEDSKALQL-----------LKPDLVLFTGDFGNEN---------------------VE- 80 (349)
Q Consensus 40 ril~iSDlH~~~~~------~~~~~~i~~-----------~~pD~vI~~GDl~~~~---------------------~~- 80 (349)
+++++||+|.+... +.+++.+.. .++..+|++||.++.. .+
T Consensus 1 ~i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T cd07387 1 YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEA 80 (257)
T ss_pred CEEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHH
Confidence 47999999997652 334555552 2345799999988621 01
Q ss_pred ---HHHHHHcC--CCCEEEEcCCCCCCcc
Q 018902 81 ---IVQSVAEL--EFPKAVILGNHDSWKT 104 (349)
Q Consensus 81 ---~l~~l~~l--~~Pi~~V~GNHD~~~~ 104 (349)
+-+.|.++ .+||.+.|||||....
T Consensus 81 ~~~ld~~l~~l~~~i~V~imPG~~Dp~~~ 109 (257)
T cd07387 81 VKELDNFLSQLASSVPVDLMPGEFDPANH 109 (257)
T ss_pred HHHHHHHHHhhhcCCeEEECCCCCCcccc
Confidence 11122332 5899999999997543
No 110
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=97.53 E-value=0.00016 Score=67.82 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=44.6
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCC-CCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCcc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLL-KPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWKT 104 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~-~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~~ 104 (349)
+++++||+|++... .++++..... ..+.+|++||++|+. .+.+..|..+ +-.++.+.||||....
T Consensus 52 ~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~ 125 (321)
T cd07420 52 QVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIM 125 (321)
T ss_pred CeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhh
Confidence 78999999999764 3444433222 236899999999974 4555444332 3458899999998654
No 111
>PHA03008 hypothetical protein; Provisional
Probab=97.50 E-value=0.0016 Score=55.44 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=39.9
Q ss_pred eEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCc
Q 018902 188 LVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADS 267 (349)
Q Consensus 188 ~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~g 267 (349)
..||+||.||++.++. ..|++.|.+.+.++ +|++.++||.-+...-. .. .. ..
T Consensus 162 tDILITHgPP~GhLD~--------------~vGC~~Ll~~I~rV------KPKyHVFGh~~~~~~p~----~~--~y-~d 214 (234)
T PHA03008 162 CDILITASPPFAILDD--------------DLACGDLFSKVIKI------KPKFHIFNGLTQFSHPN----IF--IY-KD 214 (234)
T ss_pred CCEEEeCCCCcccccc--------------ccCcHHHHHHHHHh------CCcEEEeCCccccCCCc----EE--Ee-cc
Confidence 5799999999987432 23888877766643 49999999965442111 11 11 46
Q ss_pred eEEEeecc
Q 018902 268 TIYLNGAI 275 (349)
Q Consensus 268 t~yvn~g~ 275 (349)
..++|+-.
T Consensus 215 i~f~nsni 222 (234)
T PHA03008 215 IIFINSNI 222 (234)
T ss_pred eEEEeccc
Confidence 77777754
No 112
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=97.45 E-value=0.00022 Score=66.37 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=45.8
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
++.++||+|++... .++++.......+-+|+.||++|+. .+.+..+..+ +..++.+.||||...
T Consensus 51 ~i~viGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~ 122 (293)
T cd07414 51 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS 122 (293)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhh
Confidence 59999999998764 4455555445567899999999963 4444444332 345899999999864
No 113
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=97.44 E-value=0.00015 Score=67.12 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=44.9
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
++.++||+|++... .++++.......+-+|++||++|+. .+.+..+..+ +..++.+.||||...
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 114 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQ 114 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHh
Confidence 59999999998764 3455544444567899999999974 3444433322 446999999999753
No 114
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=97.40 E-value=0.00014 Score=67.62 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=44.3
Q ss_pred EEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHc----CCCCEEEEcCCCCCCcc
Q 018902 41 IVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAE----LEFPKAVILGNHDSWKT 104 (349)
Q Consensus 41 il~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~----l~~Pi~~V~GNHD~~~~ 104 (349)
+.++||+|++... .++++.+.....+-+|+.||++|+. .+.+..+.. .+..++.+.||||....
T Consensus 54 ~~ViGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 125 (294)
T PTZ00244 54 VRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASI 125 (294)
T ss_pred ceeeccCCCCHHHHHHHHHHcCCCCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhH
Confidence 7899999999764 4455555444456788999999974 344433321 14569999999997543
No 115
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=97.34 E-value=0.00038 Score=65.29 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=45.5
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
++.++||+|++... .++++.......+-+|+.||++|+. .+.+..+..+ +..++.+.||||...
T Consensus 60 ~i~vvGDIHG~~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~ 131 (320)
T PTZ00480 60 PLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS 131 (320)
T ss_pred CeEEEeecccCHHHHHHHHHhcCCCCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhh
Confidence 59999999998654 4455554444567899999999964 4555444433 345899999999854
No 116
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=97.34 E-value=0.00036 Score=65.10 Aligned_cols=64 Identities=25% Similarity=0.314 Sum_probs=45.4
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
.+.++||+|++... .++++.+.....+-+|+.||++|+. .+.+..+..+ +.-++.+.||||...
T Consensus 44 ~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 115 (303)
T PTZ00239 44 PVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQ 115 (303)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHH
Confidence 48999999998764 4455544444567899999999964 4455544433 335899999999754
No 117
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=97.30 E-value=0.019 Score=51.75 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCCEEEEcCCCCCCcc
Q 018902 79 VEIVQSVAELEFPKAVILGNHDSWKT 104 (349)
Q Consensus 79 ~~~l~~l~~l~~Pi~~V~GNHD~~~~ 104 (349)
.+.++.|..++.-++.+.+||++...
T Consensus 63 ~~~~~~l~~~G~d~~~laNNH~fD~G 88 (239)
T smart00854 63 PENAAALKAAGFDVVSLANNHSLDYG 88 (239)
T ss_pred HHHHHHHHHhCCCEEEeccCcccccc
Confidence 57888888888887777779998643
No 118
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=97.30 E-value=0.00027 Score=67.49 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=43.9
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCCC-CEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCccc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLKP-DLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWKTQ 105 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~p-D~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~~~ 105 (349)
++.++||+|++... ..+++.+.-... +.+|+.||++|+. .+.+..+..+ +..++.+.||||.....
T Consensus 67 ~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~ 141 (377)
T cd07418 67 EVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCT 141 (377)
T ss_pred CEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccch
Confidence 69999999999764 344443322223 4599999999964 4444443332 34589999999986433
No 119
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=97.27 E-value=0.025 Score=50.98 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCCEEEEcCCCCCCcc
Q 018902 79 VEIVQSVAELEFPKAVILGNHDSWKT 104 (349)
Q Consensus 79 ~~~l~~l~~l~~Pi~~V~GNHD~~~~ 104 (349)
.+.++.|..++.-++.+.+||++...
T Consensus 67 ~~~~~~L~~~G~d~~tlaNNH~fD~G 92 (239)
T cd07381 67 PEVADALKAAGFDVVSLANNHTLDYG 92 (239)
T ss_pred HHHHHHHHHhCCCEEEcccccccccc
Confidence 57888888888887777779997643
No 120
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=97.25 E-value=0.00047 Score=64.78 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=44.0
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCC-CCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLL-KPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~-~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
.++.++||+|++... .++++.+.-. +-|-+|++||++|+. .+.+..+..+ +..++.+.||||...
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~ 133 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDN 133 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHH
Confidence 479999999998764 3344433221 235799999999974 4444444332 345889999999743
No 121
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=97.15 E-value=0.0076 Score=59.72 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=82.3
Q ss_pred CCCCCCccEEEEEeCCCCCcChHHHHHHhhC-CCCCEEEEcCCCCCCc-------------------------H------
Q 018902 32 PAMSASVVRIVIVGDVHDDWDLQEDSKALQL-LKPDLVLFTGDFGNEN-------------------------V------ 79 (349)
Q Consensus 32 ~~~~~~~mril~iSDlH~~~~~~~~~~~i~~-~~pD~vI~~GDl~~~~-------------------------~------ 79 (349)
|......+||++.|+.+.........+.+.+ .+||++|++||.+-+. .
T Consensus 99 p~~~~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~ 178 (453)
T PF09423_consen 99 PDGDPDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRR 178 (453)
T ss_dssp TT-----EEEEEE----CCC---HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S-----SSSS--SHHHHHHH
T ss_pred CCCCCCceEEEEECCCCcccChHHHHHhhhccCCCcEEEEeCCeeeccCCcccccccccccccccccccccccHHHHHHH
Confidence 4444456999999999985443456666666 6999999999975211 0
Q ss_pred -------HHHHHHHcCCCCEEEEcCCCCCCcccccccc-------------chhHHHHHHHHhCC--------cceeeEE
Q 018902 80 -------EIVQSVAELEFPKAVILGNHDSWKTQEFSGK-------------KKDGVQLQLECLGE--------EHVAYRR 131 (349)
Q Consensus 80 -------~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~-------------~~~~~~~~l~~~~~--------~~~~~~~ 131 (349)
.-++.+.+ .+|+++|.=.||+......... ....++.+++.... ....|..
T Consensus 179 y~~~~~~p~l~~~~~-~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r~~~~~~~~~~~y~~ 257 (453)
T PF09423_consen 179 YRQYRSDPDLRRLHA-NVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVRNPDPPGDQGRIYRS 257 (453)
T ss_dssp HHHHHT-HHHHHHHH-HSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS---GGG-BTTB----EE
T ss_pred HHHHcCCHHHHHHhh-cccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhhcCccCCCccCCCCceEEE
Confidence 01222222 6899999999998644321111 01111222211111 1112333
Q ss_pred eecCC-ceEEEeCCeeeecCCchh----hh---hhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCC
Q 018902 132 LDFPT-LKLSIVGGRPFSCGGQQI----FR---KRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSE 203 (349)
Q Consensus 132 l~~~~-~~i~~~g~~~~~~~g~~~----~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~ 203 (349)
+.... +.+.++..+.+....... .. ....+...|. +|..||.+.+.+.. .+.+|+++=.|.......
T Consensus 258 ~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~----~Q~~wL~~~L~~s~-a~~kvi~s~v~~~~~~~~ 332 (453)
T PF09423_consen 258 FRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGE----EQWDWLEDWLASSQ-ATWKVIGSSVPFSPLNFP 332 (453)
T ss_dssp EEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-H----HHHHHHHHHHHH---SSEEEEE-SS--S---SS
T ss_pred EecCCceeEEEEechhccccccccccccccccccCCccCcCCH----HHHHHHHHHHhcCC-CcEEEEEeCCceeccccc
Confidence 34444 566666664332210000 00 0001122332 34566777666544 567888876643222111
Q ss_pred CCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCccEEEeCccCCCc
Q 018902 204 PNDICGKDWGFGGGDH-GDPDLAQAISLLKETTKLCIPLVVFGHMHKEL 251 (349)
Q Consensus 204 ~~~~~~~d~~~~~~~~-G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~ 251 (349)
... .........| |-+.-++.|.+++++.+.+=-++|+|.+|...
T Consensus 333 ~~~---~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~ 378 (453)
T PF09423_consen 333 DAA---EGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHASA 378 (453)
T ss_dssp -SS----S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSEE
T ss_pred ccc---cccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchhe
Confidence 000 0000011234 56666677777776443222488999999973
No 122
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=97.15 E-value=0.00088 Score=62.91 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=42.2
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCC--------CCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLK--------PDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~--------pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
.+.++||+|++... .++++.+.... ..-+|+.||++|+. .+.+..+..+ +..++.+.||||...
T Consensus 49 ~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~ 128 (311)
T cd07419 49 PIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRD 128 (311)
T ss_pred CEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHH
Confidence 48899999998764 33554432111 12488999999964 4455444333 445899999999753
No 123
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=96.96 E-value=0.044 Score=48.84 Aligned_cols=64 Identities=25% Similarity=0.318 Sum_probs=46.3
Q ss_pred cEEEEEeCCCCCcChHHH---HHHhh-CCCCCEEEEcCCCCCC----cHHHHHHHHcCCCCEEEEcCCCCCCc
Q 018902 39 VRIVIVGDVHDDWDLQED---SKALQ-LLKPDLVLFTGDFGNE----NVEIVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 39 mril~iSDlH~~~~~~~~---~~~i~-~~~pD~vI~~GDl~~~----~~~~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
||+++++|+=+..-...+ +..++ +.++|+||+-|--+.. ..+..+.|.+.++- ++..|||=+..
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~d-viT~GNH~wd~ 72 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGAD-VITLGNHTWDQ 72 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCCC-EEecccccccc
Confidence 799999999987654333 33333 4589999999987653 35677777666665 67899998643
No 124
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.85 E-value=0.11 Score=47.05 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=77.3
Q ss_pred cHHHHHHHHcCCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCccee----------eEEeecCCceEEEeCCeee
Q 018902 78 NVEIVQSVAELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHVA----------YRRLDFPTLKLSIVGGRPF 147 (349)
Q Consensus 78 ~~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~l~~~~~~i~~~g~~~~ 147 (349)
..+.++.|..++.-++.+.-||-+... ......-.+.++..+..+.+ ...++.++.++.+++....
T Consensus 64 ~~~~~~~L~~~G~d~vslANNH~~D~G----~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~ 139 (250)
T PF09587_consen 64 PPEILDALKDAGFDVVSLANNHIFDYG----EEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDG 139 (250)
T ss_pred CHHHHHHHHHcCCCEEEecCCCCcccc----HHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcC
Confidence 357889999888888899999976532 12222233444444444333 2334455666665554321
Q ss_pred ecCCchhhhhhh------hhhccCCcchHHHHHHHHHHHhCC-CCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018902 148 SCGGQQIFRKRL------LSVRYGVQDMDESAKRIYKVALGT-PDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHG 220 (349)
Q Consensus 148 ~~~g~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G 220 (349)
. .+........ .....+........+.+.+.+++. ...+.+|++.|... ++... =
T Consensus 140 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~HwG~-------------e~~~~----p 201 (250)
T PF09587_consen 140 E-NGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHWGI-------------EYENY----P 201 (250)
T ss_pred C-CCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEEEeccCC-------------CCCCC----C
Confidence 1 0000000000 000000011111112233322222 23578999999842 11111 1
Q ss_pred CHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEE
Q 018902 221 DPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKM 260 (349)
Q Consensus 221 ~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~ 260 (349)
.+..++....+++ .++|+|+.+|.|.. +++...
T Consensus 202 ~~~q~~~a~~lid---aGaDiIiG~HpHv~----q~~E~y 234 (250)
T PF09587_consen 202 TPEQRELARALID---AGADIIIGHHPHVI----QPVEIY 234 (250)
T ss_pred CHHHHHHHHHHHH---cCCCEEEeCCCCcc----cceEEE
Confidence 3555566666665 47999999999999 455544
No 125
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=95.91 E-value=0.011 Score=52.18 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=38.8
Q ss_pred EEEEeCCCCCcCh------HHHHHHhh-CCCCCEEEEcCCCCCCc----------------H----HHHHHHHcC--CCC
Q 018902 41 IVIVGDVHDDWDL------QEDSKALQ-LLKPDLVLFTGDFGNEN----------------V----EIVQSVAEL--EFP 91 (349)
Q Consensus 41 il~iSDlH~~~~~------~~~~~~i~-~~~pD~vI~~GDl~~~~----------------~----~~l~~l~~l--~~P 91 (349)
|+++||+|.+... .+++..+. ..+|+.+|++|++++.. . ++.+.+.++ .++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 6899999998442 34455555 67899999999998731 1 122222333 478
Q ss_pred EEEEcCCCCCCcc
Q 018902 92 KAVILGNHDSWKT 104 (349)
Q Consensus 92 i~~V~GNHD~~~~ 104 (349)
+++|||+||....
T Consensus 81 vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 81 VVLVPGPNDPTSS 93 (209)
T ss_dssp EEEE--TTCTT-S
T ss_pred EEEeCCCcccccc
Confidence 9999999998765
No 126
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.78 Score=46.03 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=40.7
Q ss_pred ccEEEEEeCCCCCcCh------------------HHHHHHhhCCCCCE-EEEcCCCCCC---------cHHHHHHHHcCC
Q 018902 38 VVRIVIVGDVHDDWDL------------------QEDSKALQLLKPDL-VLFTGDFGNE---------NVEIVQSVAELE 89 (349)
Q Consensus 38 ~mril~iSDlH~~~~~------------------~~~~~~i~~~~pD~-vI~~GDl~~~---------~~~~l~~l~~l~ 89 (349)
.++|.|.+|+|+.... ..+.+.+....+|+ ++-+||+-+. .-.....|.++
T Consensus 42 ~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~~~- 120 (602)
T KOG4419|consen 42 QPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLFKM- 120 (602)
T ss_pred cccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCceeeeccCCchHHHHHHHhc-
Confidence 4789999999996430 11223344567775 6678998763 12344444432
Q ss_pred CC-EEEEcCCCCCCcc
Q 018902 90 FP-KAVILGNHDSWKT 104 (349)
Q Consensus 90 ~P-i~~V~GNHD~~~~ 104 (349)
.| =....|||+.+..
T Consensus 121 ~~yD~l~lGNHEl~~~ 136 (602)
T KOG4419|consen 121 MPYDILTLGNHELYQA 136 (602)
T ss_pred Cccchhhhcchhhhhh
Confidence 23 3578999998765
No 127
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=94.91 E-value=0.021 Score=53.95 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=43.4
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCCCC-EEEEcCCCCCCcHHHHH------HHH-cCCCCEEEEcCCCCCCccc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLKPD-LVLFTGDFGNENVEIVQ------SVA-ELEFPKAVILGNHDSWKTQ 105 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~pD-~vI~~GDl~~~~~~~l~------~l~-~l~~Pi~~V~GNHD~~~~~ 105 (349)
-+.+++|+|++... .+++.......|| -.+++||++|+...-++ .+. +.+..++.+.|||+.....
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in 134 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASIN 134 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCCCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEecccccccccc
Confidence 48999999999763 3333333213355 59999999997533211 111 1356699999999987654
No 128
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=94.77 E-value=0.038 Score=49.12 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=40.2
Q ss_pred EEEEeCCCCCcChHHHHHHhh--CCCC-CEEEEcCCCCCCcHHHHH------HHH-cCCCCEEEEcCCCCCCccc
Q 018902 41 IVIVGDVHDDWDLQEDSKALQ--LLKP-DLVLFTGDFGNENVEIVQ------SVA-ELEFPKAVILGNHDSWKTQ 105 (349)
Q Consensus 41 il~iSDlH~~~~~~~~~~~i~--~~~p-D~vI~~GDl~~~~~~~l~------~l~-~l~~Pi~~V~GNHD~~~~~ 105 (349)
+.+.+|+|++... +++..+ ..-| .-.++.||++|+....++ .|+ +.+..+-.|.|||+.....
T Consensus 45 vtvcGDIHGQf~D--llelf~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqit 117 (303)
T KOG0372|consen 45 VTVCGDIHGQFYD--LLELFRIGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQIT 117 (303)
T ss_pred cEEeecccchHHH--HHHHHHhCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhh
Confidence 7789999998763 333222 2222 358999999997532222 222 2256689999999976543
No 129
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=93.92 E-value=3.2 Score=37.50 Aligned_cols=221 Identities=18% Similarity=0.201 Sum_probs=90.6
Q ss_pred EEEeCCCCCcCh---HHHHHHhh-CCCCCEEEEcCCCCCC----cHHHHHHHHcCCCCEEEEcCCCCCCccccccccchh
Q 018902 42 VIVGDVHDDWDL---QEDSKALQ-LLKPDLVLFTGDFGNE----NVEIVQSVAELEFPKAVILGNHDSWKTQEFSGKKKD 113 (349)
Q Consensus 42 l~iSDlH~~~~~---~~~~~~i~-~~~pD~vI~~GDl~~~----~~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~ 113 (349)
++++|+=+..-. .+.+..++ +.++|+||.-|.-... ..+..+.|.+.++- ++..|||=+....
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~GvD-viT~GNH~wdkke-------- 71 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFKAGVD-VITMGNHIWDKKE-------- 71 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-S-EEE--TTTTSSTT--------
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHhcCCC-EEecCcccccCcH--------
Confidence 567887765433 33344444 5699999999997653 35667777666655 6789999865322
Q ss_pred HHHHHHHH-------h----CCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhC
Q 018902 114 GVQLQLEC-------L----GEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALG 182 (349)
Q Consensus 114 ~~~~~l~~-------~----~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 182 (349)
+...+.. . +....++..++..+.++.+++. -|... + ...+.....++++.+.+..
T Consensus 72 -i~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl-----~Gr~f-----m---~~~~~PF~~~d~~l~~l~~ 137 (253)
T PF13277_consen 72 -IFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINL-----MGRVF-----M---PPIDCPFRAADRLLEELKE 137 (253)
T ss_dssp -HHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEE-----E--TT-----S------S-HHHHHHHHHHH---
T ss_pred -HHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEEC-----ccccc-----C---CCCCChHHHHHHHHHhccc
Confidence 2222222 1 1122344445545555554432 12110 0 1111233334555555422
Q ss_pred CCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEE
Q 018902 183 TPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIV 262 (349)
Q Consensus 183 ~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~ 262 (349)
+.+..||=.|.=- ---..++-.++. + ++.+|+-=|||-+.. -.++
T Consensus 138 --~~~~iiVDFHAEa------------------------TSEK~A~g~~lD--G-rvsaV~GTHTHVqTa----DerI-- 182 (253)
T PF13277_consen 138 --ETDIIIVDFHAEA------------------------TSEKQAMGWYLD--G-RVSAVVGTHTHVQTA----DERI-- 182 (253)
T ss_dssp ----SEEEEEEE-S-------------------------HHHHHHHHHHHB--T-TBSEEEEESSSS-BS------EE--
T ss_pred --cCCEEEEEeecCc------------------------HHHHHHHHHHhC--C-cEEEEEeCCCCccCc----hhhc--
Confidence 2345666677510 001145555665 3 799999999999832 2233
Q ss_pred EcCCceEEEee-ccc-ceeeccCCccCCCCCcccc------cccccCCCCCCceeeEEEEEEeC--CeEeEEE
Q 018902 263 VGADSTIYLNG-AIV-PRVKRLIDEQGADSSSVSN------KTSFLRPDSKGTVRAFTVVEILD--GRIDKIA 325 (349)
Q Consensus 263 ~~~~gt~yvn~-g~~-pr~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~f~~v~i~~--~~v~~~~ 325 (349)
=++||.|+.- |+. |+ ++ --|++...+=+ .++.|.++.+...-.-+++++++ |+.+.++
T Consensus 183 -Lp~GTaYiTDvGMtG~~---ds-ViG~~~e~~i~rf~t~~p~~~~~~a~g~~~l~gv~ieid~~tgka~~Ie 250 (253)
T PF13277_consen 183 -LPGGTAYITDVGMTGPY---DS-VIGMDPEEVIERFLTGLPRKRFEVAEGPAQLNGVVIEIDEKTGKATSIE 250 (253)
T ss_dssp --TTS-EEES---EBEES---SS-BTTB-HHHHHHHHHHSS------B--S-EEEEEEEEEE-----------
T ss_pred -cCCCCEEEecCccccCc---cc-ccccCHHHHHHHHHhcCCCcccccCCCCCEEEEEEEEEecccccccccc
Confidence 2478999764 321 11 00 00111111001 12245555444445778888876 5555444
No 130
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=93.29 E-value=0.13 Score=46.19 Aligned_cols=80 Identities=28% Similarity=0.370 Sum_probs=49.6
Q ss_pred EEEEEeCCCCCcCh-HHHHHHhhCCCCCE-EEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCcccccccc
Q 018902 40 RIVIVGDVHDDWDL-QEDSKALQLLKPDL-VLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWKTQEFSGK 110 (349)
Q Consensus 40 ril~iSDlH~~~~~-~~~~~~i~~~~pD~-vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~~~~~~~~ 110 (349)
-..+.+|+|++... -+++ .+-...||. .++.||++++. .+.+..|..+ +-.|-.++|||+.....+.-
T Consensus 61 pvtvcGDvHGqf~dl~ELf-kiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvy-- 137 (319)
T KOG0371|consen 61 PVTVCGDVHGQFHDLIELF-KIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVY-- 137 (319)
T ss_pred ceEEecCcchhHHHHHHHH-HccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHH--
Confidence 38899999999763 2222 344566764 88999999863 3444444333 35588999999975433221
Q ss_pred chhHHHHHHHHhCC
Q 018902 111 KKDGVQLQLECLGE 124 (349)
Q Consensus 111 ~~~~~~~~l~~~~~ 124 (349)
..+.+.++..|+
T Consensus 138 --gfydeclRkyg~ 149 (319)
T KOG0371|consen 138 --GFYDECLRKYGN 149 (319)
T ss_pred --hhHHHHHhhccc
Confidence 124455555554
No 131
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.71 E-value=0.22 Score=43.68 Aligned_cols=63 Identities=25% Similarity=0.362 Sum_probs=40.4
Q ss_pred EEEEeCCCCCcCh-HHHHHHhhCCCCC-EEEEcCCCCCCc---HHHHH----HHHcCCCCEEEEcCCCCCCcc
Q 018902 41 IVIVGDVHDDWDL-QEDSKALQLLKPD-LVLFTGDFGNEN---VEIVQ----SVAELEFPKAVILGNHDSWKT 104 (349)
Q Consensus 41 il~iSDlH~~~~~-~~~~~~i~~~~pD-~vI~~GDl~~~~---~~~l~----~l~~l~~Pi~~V~GNHD~~~~ 104 (349)
+-+.+|+|++... .++.+.- ..-|| -.|+.||++|+. .+... ...+.+..|-.+.|||+....
T Consensus 48 VTvCGDIHGQFyDL~eLFrtg-G~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqi 119 (306)
T KOG0373|consen 48 VTVCGDIHGQFYDLLELFRTG-GQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQI 119 (306)
T ss_pred eeEeeccchhHHHHHHHHHhc-CCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhh
Confidence 6689999998763 2233221 23345 489999999974 23222 223446778999999997543
No 132
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=92.49 E-value=0.14 Score=47.95 Aligned_cols=76 Identities=22% Similarity=0.287 Sum_probs=46.8
Q ss_pred CCCCCCCCCccEEEEEeCCCCCcChHHHHHHhh---CCCCCEEEEcCCCCCCc---HHHHHHHHc--C--CCCEEEEcCC
Q 018902 29 RSAPAMSASVVRIVIVGDVHDDWDLQEDSKALQ---LLKPDLVLFTGDFGNEN---VEIVQSVAE--L--EFPKAVILGN 98 (349)
Q Consensus 29 ~~~~~~~~~~mril~iSDlH~~~~~~~~~~~i~---~~~pD~vI~~GDl~~~~---~~~l~~l~~--l--~~Pi~~V~GN 98 (349)
|.++.|..-.--|-+.+|||++++. +.+..+ ...-.-.++.||.+|+. .+.+-.|-. + +...+.+.||
T Consensus 78 r~Eknmi~v~APiTVCGDIHGQf~D--LmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGN 155 (517)
T KOG0375|consen 78 RQEKNMIEVEAPITVCGDIHGQFFD--LMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGN 155 (517)
T ss_pred hcCCceEeccCCeeEecccchHHHH--HHHHHHccCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCC
Confidence 4455555544458899999998763 333222 11223589999999973 232222222 2 4457899999
Q ss_pred CCCCcccc
Q 018902 99 HDSWKTQE 106 (349)
Q Consensus 99 HD~~~~~~ 106 (349)
|+......
T Consensus 156 HECrHLT~ 163 (517)
T KOG0375|consen 156 HECRHLTE 163 (517)
T ss_pred cchhhhHh
Confidence 99876543
No 133
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=90.39 E-value=1.1 Score=41.24 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=43.5
Q ss_pred ccEEEEEeCCCCCcCh-----HHHHHHhh-C----CCCCEEEEcCCCCCCc-----------HHHHHHHHc-----C---
Q 018902 38 VVRIVIVGDVHDDWDL-----QEDSKALQ-L----LKPDLVLFTGDFGNEN-----------VEIVQSVAE-----L--- 88 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-----~~~~~~i~-~----~~pD~vI~~GDl~~~~-----------~~~l~~l~~-----l--- 88 (349)
..+|+++||+|++... +.+..... . ..|-++|++|+++... .+-.+.|+. .
T Consensus 27 ~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L 106 (291)
T PTZ00235 27 RHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLI 106 (291)
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHH
Confidence 4689999999998653 22333332 1 2388999999987431 223333332 1
Q ss_pred --CCCEEEEcCCCCCCcc
Q 018902 89 --EFPKAVILGNHDSWKT 104 (349)
Q Consensus 89 --~~Pi~~V~GNHD~~~~ 104 (349)
...+++|||-.|-+..
T Consensus 107 ~~~s~fVFVPGpnDPw~s 124 (291)
T PTZ00235 107 LEHCYLIFIPGINDPCAC 124 (291)
T ss_pred HhcCeEEEECCCCCCCcC
Confidence 3568899999998653
No 134
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=88.60 E-value=0.97 Score=41.35 Aligned_cols=65 Identities=23% Similarity=0.285 Sum_probs=40.6
Q ss_pred CCCCCeEEEEeccCCCCCCCCCCCCCCC--CCCCCCCCC--CCHHHHHHHHHHHHhcCCCccEEEeCccCCC
Q 018902 183 TPDDHLVILLAHNGPSGLGSEPNDICGK--DWGFGGGDH--GDPDLAQAISLLKETTKLCIPLVVFGHMHKE 250 (349)
Q Consensus 183 ~~~~~~~Ilv~H~PP~~~g~~~~~~~~~--d~~~~~~~~--G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~ 250 (349)
....++++|+.|..=....++..++..+ |-+.++..| +.++ +.+|..+++ ++++-..+.||-|..
T Consensus 266 aadgrpv~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~e-r~all~~lq--GYNvvg~fhGhkhd~ 334 (392)
T COG5555 266 AADGRPVYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPE-RGALLFFLQ--GYNVVGTFHGHKHDF 334 (392)
T ss_pred ccCCCceeehhhhCccceeccccCchhcccccCCCCCCCCCCCCC-cchHHHhhc--CceeEEecccccccc
Confidence 3457899999998644443444343332 323333333 3333 366777777 789999999999986
No 135
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=86.42 E-value=16 Score=36.06 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEeccCCCCC-CCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCccEEEeCccC
Q 018902 171 ESAKRIYKVALGTPDDHLVILLAHNGPSGL-GSEPNDICGKDWGFGGGDH-GDPDLAQAISLLKETTKLCIPLVVFGHMH 248 (349)
Q Consensus 171 ~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~-g~~~~~~~~~d~~~~~~~~-G~~~~~~al~~l~~~~~~~~~lvl~GH~H 248 (349)
+|.+||.+.+... +..++|+-.-.| ++. -.... ....++......| |.+.-++.|..+++..+.+=.+||.|.+|
T Consensus 340 ~QeqWLk~~L~~S-katWnVia~q~~-~~~~~~d~~-~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH 416 (522)
T COG3540 340 QQEQWLKRGLGAS-KATWNVIAQQMP-LGLVVFDGS-PATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVH 416 (522)
T ss_pred HHHHHHHhhhhhc-chhhhhhhhhcc-eeEeecCCC-ccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhH
Confidence 3456776666653 445677666653 222 00000 0001222222234 66666778888888666555799999999
Q ss_pred CC
Q 018902 249 KE 250 (349)
Q Consensus 249 ~~ 250 (349)
..
T Consensus 417 ~~ 418 (522)
T COG3540 417 YS 418 (522)
T ss_pred HH
Confidence 86
No 136
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=80.51 E-value=2.4 Score=33.01 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=43.3
Q ss_pred ccEEEEEeCCCCCc--------------C---hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCC-EEEEcCCC
Q 018902 38 VVRIVIVGDVHDDW--------------D---LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFP-KAVILGNH 99 (349)
Q Consensus 38 ~mril~iSDlH~~~--------------~---~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~P-i~~V~GNH 99 (349)
++|++++|| +... . ..+.++.+...++..|+++=++.+...+.++.+.+...| ++.||++|
T Consensus 3 ~~kIaVIGD-~dtv~GFrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~~i~~~i~~~~~~~~P~Il~IP~~~ 81 (104)
T PRK01395 3 MYKIGVVGD-KDSILPFKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQIAADIPETIERYDNQVLPAIILIPSNQ 81 (104)
T ss_pred ceeEEEEEC-HHHHHHHHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHHHHHhHHHHHHhcCCCCCEEEEeCCCC
Confidence 468999999 4310 1 133455555667778998888887766777777655677 56799988
Q ss_pred CCC
Q 018902 100 DSW 102 (349)
Q Consensus 100 D~~ 102 (349)
=..
T Consensus 82 g~~ 84 (104)
T PRK01395 82 GSL 84 (104)
T ss_pred CCc
Confidence 743
No 137
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.44 E-value=7.2 Score=38.18 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=42.1
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhC--CCCCEEEEcCCCCCC---cHHHHH---HHHcCCCCEEEEcCCCC
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQL--LKPDLVLFTGDFGNE---NVEIVQ---SVAELEFPKAVILGNHD 100 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~--~~pD~vI~~GDl~~~---~~~~l~---~l~~l~~Pi~~V~GNHD 100 (349)
+.||++++|.-+.... -+-++.++. -..|++|..|+++.. ..++.+ ...++++|+|+.-+|--
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vPiptY~~g~~~~ 76 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVPIPTYFLGDNAN 76 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCceeEEEecCCCC
Confidence 3699999999887652 223344442 358999999999873 233333 33456888888887774
No 138
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=72.26 E-value=10 Score=37.01 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=44.9
Q ss_pred cEEEEEeCCCCCcCh--HH---HHHHhhCCCCCEEEEcCCCCCC------c---HHHHHHHHcC---------CCCEEEE
Q 018902 39 VRIVIVGDVHDDWDL--QE---DSKALQLLKPDLVLFTGDFGNE------N---VEIVQSVAEL---------EFPKAVI 95 (349)
Q Consensus 39 mril~iSDlH~~~~~--~~---~~~~i~~~~pD~vI~~GDl~~~------~---~~~l~~l~~l---------~~Pi~~V 95 (349)
-+|+++||+|++... ++ +.+..+...|-++|++|-++.. . .+-++.|+.. +...++|
T Consensus 283 ~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIFV 362 (525)
T KOG3818|consen 283 TSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQFIFV 362 (525)
T ss_pred ceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceEEEe
Confidence 479999999998642 33 3334445678899999999742 1 1223333321 3457899
Q ss_pred cCCCCCCcccc
Q 018902 96 LGNHDSWKTQE 106 (349)
Q Consensus 96 ~GNHD~~~~~~ 106 (349)
||-.|.+...-
T Consensus 363 PGP~Dp~~~~i 373 (525)
T KOG3818|consen 363 PGPNDPWVDNI 373 (525)
T ss_pred cCCCCCCcCcc
Confidence 99999887653
No 139
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=70.42 E-value=8.1 Score=29.74 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=26.4
Q ss_pred hCCCCCEEEEcCCCCCCcHHHHHH-HHcCCCCE-EEEcC
Q 018902 61 QLLKPDLVLFTGDFGNENVEIVQS-VAELEFPK-AVILG 97 (349)
Q Consensus 61 ~~~~pD~vI~~GDl~~~~~~~l~~-l~~l~~Pi-~~V~G 97 (349)
...++..|+++-++.+...+.++. +.+...|. +.|||
T Consensus 41 ~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 41 EDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred hCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 456778899999998876666665 55556785 45776
No 140
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=63.79 E-value=11 Score=34.23 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=32.3
Q ss_pred CCccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCC
Q 018902 36 ASVVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFG 75 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~ 75 (349)
....+|++.||+.+-.+ +..++.+.+.+||++|+.|=.+
T Consensus 174 dg~~~i~faSDvqGp~~-~~~l~~i~e~~P~v~ii~GPpt 212 (304)
T COG2248 174 DGKSSIVFASDVQGPIN-DEALEFILEKRPDVLIIGGPPT 212 (304)
T ss_pred cCCeEEEEcccccCCCc-cHHHHHHHhcCCCEEEecCCch
Confidence 45579999999998766 4567777778999999999976
No 141
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=62.48 E-value=18 Score=31.77 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEeCccCCC
Q 018902 220 GDPDLAQAISLLKETTKLCIPLVVFGHMHKE 250 (349)
Q Consensus 220 G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~ 250 (349)
|.+.-++.+..+++..+.+--++++|.+|..
T Consensus 174 ~~~~er~~l~~~~~~~~~~~vv~lSGDvH~~ 204 (228)
T cd07389 174 GYPAERERLLDLLAKRKIKNVVFLSGDVHLA 204 (228)
T ss_pred ccHHHHHHHHHHHHHhCCCCeEEEecHHHHH
Confidence 4455556665554444445678899999987
No 142
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=62.27 E-value=6.1 Score=40.22 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=34.3
Q ss_pred HHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcCCCCEEEEcCCCCCCc
Q 018902 57 SKALQLLKPDLVLFTGDFGNEN---VEIVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
...|+..-+|-+-++||++|+. ..+++.|... --+=+.-||||.-+
T Consensus 177 ~~lIqrL~VDhLHIvGDIyDRGp~pd~ImD~Lm~~-hsvDIQWGNHDIlW 225 (640)
T PF06874_consen 177 SELIQRLAVDHLHIVGDIYDRGPRPDKIMDRLMNY-HSVDIQWGNHDILW 225 (640)
T ss_pred HHHHHHHhhhheeecccccCCCCChhHHHHHHhcC-CCccccccchHHHH
Confidence 3455677899999999999974 5688888652 23557889999743
No 143
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=60.86 E-value=19 Score=30.57 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=29.6
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
.++.+...+||+||..+-..+. +..+.|.++++|++++.-+
T Consensus 61 n~E~ll~l~PDlii~~~~~~~~--~~~~~l~~~gIpvv~i~~~ 101 (186)
T cd01141 61 NVELIVALKPDLVILYGGFQAQ--TILDKLEQLGIPVLYVNEY 101 (186)
T ss_pred CHHHHhccCCCEEEEecCCCch--hHHHHHHHcCCCEEEeCCC
Confidence 3556667899999886543332 5777888889999998743
No 144
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=60.14 E-value=48 Score=25.87 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=41.8
Q ss_pred ccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCC---cHHHHHHHHcCC--CCEEEEcCCCCC
Q 018902 38 VVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNE---NVEIVQSVAELE--FPKAVILGNHDS 101 (349)
Q Consensus 38 ~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~---~~~~l~~l~~l~--~Pi~~V~GNHD~ 101 (349)
.++++.++ .+...+++++.+.+.+||+|.++.=.... ..++++.+.+.. .+.+++-|+|-.
T Consensus 27 G~~V~~lg---~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 27 GFEVIDLG---VDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred CCEEEECC---CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 35554444 23345788899999999999999865554 345666666653 456899999864
No 145
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=50.17 E-value=38 Score=25.94 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
....+.++..++-+||++.|...+..+-++.+.+ .++|++...|+-+
T Consensus 22 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~ 69 (99)
T PRK01018 22 KRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSV 69 (99)
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHH
Confidence 4567788888999999999987655555554433 4789887777654
No 146
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=48.54 E-value=98 Score=22.11 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=39.2
Q ss_pred CccEEEEEeCCCCCcCh--HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcCC
Q 018902 37 SVVRIVIVGDVHDDWDL--QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILGN 98 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~--~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~GN 98 (349)
..||+++.+--...... .+.++.+.+..|+.+|+.|.--..+..+.+.-++ .++|+...+=|
T Consensus 2 ~g~rVli~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 2 EGMRVLITGGRDWTDHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred CCCEEEEEECCccccHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 46899999987775332 3345555666799999999775555454444433 35666554433
No 147
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=47.59 E-value=53 Score=24.45 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=31.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHH-HcCCCCEEEEc
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSV-AELEFPKAVIL 96 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l-~~l~~Pi~~V~ 96 (349)
++..+.++....-.|++++|.......-+..+ .+.++|+.+|+
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 56788888888999999999986544333333 33478988875
No 148
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=46.78 E-value=16 Score=35.93 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=36.3
Q ss_pred HHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcCCCCEEEEcCCCCCCccccccc
Q 018902 58 KALQLLKPDLVLFTGDFGNEN---VEIVQSVAELEFPKAVILGNHDSWKTQEFSG 109 (349)
Q Consensus 58 ~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~ 109 (349)
..++++-+|-+-++||+.|+. ..+++.|.+.. .+=+.-||||.-+...+.+
T Consensus 184 ~~iqrLvVDhLHiVGDIyDRGP~pd~Imd~L~~yh-svDiQWGNHDilWmgA~sG 237 (648)
T COG3855 184 YLIQRLVVDHLHIVGDIYDRGPYPDKIMDTLINYH-SVDIQWGNHDILWMGAASG 237 (648)
T ss_pred HHHHHHhhhheeeecccccCCCCchHHHHHHhhcc-cccccccCcceEEeecccC
Confidence 344567899999999999974 46777776521 2446779999977665443
No 149
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=46.32 E-value=3.9 Score=39.71 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=37.7
Q ss_pred EEEEEeCCCCCcChHHHHHHhhCC-CC-CEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCC
Q 018902 40 RIVIVGDVHDDWDLQEDSKALQLL-KP-DLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSW 102 (349)
Q Consensus 40 ril~iSDlH~~~~~~~~~~~i~~~-~p-D~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~ 102 (349)
.+-+.+|+|+..+.--++-+-+.. .+ .=.|+-||++|+. .+++-.|-.+ |.-++.-.|||+..
T Consensus 166 qVTiCGDLHGklDDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~ 237 (631)
T KOG0377|consen 166 QVTICGDLHGKLDDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDH 237 (631)
T ss_pred ceEEeccccccccceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHH
Confidence 478899999976531111111211 11 2378999999975 3433333221 45588999999964
No 150
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=44.44 E-value=16 Score=35.97 Aligned_cols=68 Identities=25% Similarity=0.327 Sum_probs=42.1
Q ss_pred CCccEEEEEeCCCCCcChHHHHHHhhCC--CCCEEEEcCCCCCCcHH---HHHHH--HcC--CCCEEEEcCCCCCCc
Q 018902 36 ASVVRIVIVGDVHDDWDLQEDSKALQLL--KPDLVLFTGDFGNENVE---IVQSV--AEL--EFPKAVILGNHDSWK 103 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~~~~~~~i~~~--~pD~vI~~GDl~~~~~~---~l~~l--~~l--~~Pi~~V~GNHD~~~ 103 (349)
+...++.+.||+|+.......+-.++.. .-.-.++.||+++.... ....+ -++ +--.|...|||+...
T Consensus 211 ~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~ 287 (476)
T KOG0376|consen 211 PGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDN 287 (476)
T ss_pred CCCceEEecCCccccccchhhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchH
Confidence 4557999999999998754333333322 11237899999986322 11111 112 344899999998654
No 151
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=44.04 E-value=40 Score=29.41 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHcCCCCE--------------EEEcCCCCCC
Q 018902 63 LKPDLVLFTGDFGNENVEIVQSVAELEFPK--------------AVILGNHDSW 102 (349)
Q Consensus 63 ~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi--------------~~V~GNHD~~ 102 (349)
..||+||+++ -..+ ...+++-.++++|+ |.||||.|-.
T Consensus 107 ~~Pdlliv~d-p~~~-~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~ 158 (196)
T TIGR01012 107 REPEVVVVTD-PRAD-HQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGR 158 (196)
T ss_pred CCCCEEEEEC-Cccc-cHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchH
Confidence 3689888873 3222 34444555567775 6788888853
No 152
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=43.94 E-value=69 Score=28.55 Aligned_cols=59 Identities=5% Similarity=0.073 Sum_probs=37.9
Q ss_pred CccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 37 SVVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 37 ~~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
..+++++. +...+.. ..+.++.+...++|.+|+.+.-.+...+.++.+.+.++|++.+-
T Consensus 28 ~g~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (273)
T cd06309 28 RGFDLKFA-DAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVD 87 (273)
T ss_pred cCCEEEEe-CCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEe
Confidence 45677765 3332322 23566667778999999987544433466777777789987764
No 153
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=43.70 E-value=52 Score=24.25 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
+...+.++..++-+||++.|..+....-+..+.+ .++|++.+.=+.|
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~e 64 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKK 64 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 4577888888999999999999865555555544 4789888774444
No 154
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=43.33 E-value=39 Score=29.75 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=29.2
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
..+.+.+.+||+|+..+.... ....+.|.++++|++.+.
T Consensus 50 n~E~i~~l~PDlIi~~~~~~~--~~~~~~l~~~gipvv~~~ 88 (235)
T cd01149 50 SAEGVLSLKPTLVIASDEAGP--PEALDQLRAAGVPVVTVP 88 (235)
T ss_pred CHHHhhccCCCEEEEcCCCCC--HHHHHHHHHcCCeEEEec
Confidence 456666789999998776543 256788888889988776
No 155
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=42.74 E-value=71 Score=24.41 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=33.5
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcC-CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAEL-EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l-~~Pi~~V~GNHD 100 (349)
++.++.+...++-+||+++..-.+-.+-++.-+.+ ++|||.-.||.-
T Consensus 25 k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~Gt~~ 72 (100)
T COG1911 25 KRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEGTSV 72 (100)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecCCce
Confidence 45677788889999999998766544444444433 789998888754
No 156
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=42.47 E-value=53 Score=29.31 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCCEEEEcCCCC-C-C-cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFG-N-E-NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~-~-~-~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
.+.++.+.....|+|++.|=.. . + ..++++.+++...|++.-|||++.-
T Consensus 17 ~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i 68 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNV 68 (223)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCcccc
Confidence 4466677778899999999763 2 2 3457788888789999999999953
No 157
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=41.10 E-value=44 Score=31.38 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHHHhhCCCCCEEEEcCCCCCC--cHHHHHHHHcCCCCEEEEc
Q 018902 56 DSKALQLLKPDLVLFTGDFGNE--NVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~--~~~~l~~l~~l~~Pi~~V~ 96 (349)
.++.+.+.+||+||..+..... ..+..+.|.++++|++++.
T Consensus 83 n~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~ 125 (342)
T cd01139 83 SVEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVD 125 (342)
T ss_pred CHHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEe
Confidence 3455566899999987654432 3567888888889999886
No 158
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=41.08 E-value=59 Score=25.80 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=35.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCC-CCcHHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFG-NENVEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~-~~~~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
....+.+++.+..+||++.|.. .+....+..+.+ .++|+.+|+-=.+
T Consensus 33 ~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~ 81 (116)
T COG1358 33 NEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKE 81 (116)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHH
Confidence 4567888888999999999998 455566666655 5899888764444
No 159
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=39.58 E-value=72 Score=24.91 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
+..++.++..++-+||++.|..+...+-++...+ .++|++...|+-+
T Consensus 31 ~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~ 78 (108)
T PTZ00106 31 KSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNN 78 (108)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHH
Confidence 4567788888999999999999876665555544 3789876667655
No 160
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=39.42 E-value=57 Score=30.31 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=29.5
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.++.+...+||+||..+...+...+..+.|.++. |++++..
T Consensus 105 n~E~i~~l~PDLVi~~~~~~~~~~~~~~~L~~~g-pvv~v~~ 145 (317)
T PRK10957 105 DAEAVAAQMPDLIVISATGGDSALALYDQLSAIA-PTLVIDY 145 (317)
T ss_pred CHHHHhhcCCCEEEEeCCCchhHHHHHHHHHhhC-CEEEEeC
Confidence 3455667899999987655444456678888888 9998864
No 161
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=38.58 E-value=73 Score=28.05 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=36.7
Q ss_pred ccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 38 VVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 38 ~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
++.+++...-+......+.++.+...++|.||+.+.-.+...+.++.+.+.++|++.+-..
T Consensus 29 g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~~ 89 (268)
T cd06323 29 GYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDRE 89 (268)
T ss_pred CceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEccC
Confidence 4666655432211112356666667789999987633222345677777778998888443
No 162
>PF13941 MutL: MutL protein
Probab=38.58 E-value=39 Score=33.54 Aligned_cols=47 Identities=26% Similarity=0.553 Sum_probs=33.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCc----HHHHHHHHcCC--CCEEEEcCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNEN----VEIVQSVAELE--FPKAVILGNHDS 101 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~----~~~l~~l~~l~--~Pi~~V~GNHD~ 101 (349)
+..++.|...+||.|+++|=.=... ....+.|++.+ +| +++.||-+.
T Consensus 114 ~~~l~~i~~~~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~p-VIyAGN~~a 166 (457)
T PF13941_consen 114 EEDLEEIREIRPDIILLAGGTDGGNKEVILHNAEMLAEANLRIP-VIYAGNKAA 166 (457)
T ss_pred HHHHHHHhccCCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCc-EEEECCHHH
Confidence 6678888999999999999543222 33455565554 44 778899985
No 163
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=38.21 E-value=3.4e+02 Score=25.44 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
+..++.+...++|.||++| ........+.+.+..+|++++-...+
T Consensus 104 ~~~~~~l~~~~vdGiIi~~--~~~~~~~~~~l~~~~~P~V~i~~~~~ 148 (333)
T COG1609 104 REYLETLLQKRVDGLILLG--ERPNDSLLELLAAAGIPVVVIDRSPP 148 (333)
T ss_pred HHHHHHHHHcCCCEEEEec--CCCCHHHHHHHHhcCCCEEEEeCCCc
Confidence 4456777788999999999 44445666667766899887766444
No 164
>PRK06683 hypothetical protein; Provisional
Probab=37.69 E-value=76 Score=23.39 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEc
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVIL 96 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~ 96 (349)
+..++.++..++-+||++.|..+...+-+..+.+ .++|++.+.
T Consensus 17 ~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 17 KRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 4567788888999999999998876555554443 478987765
No 165
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=37.20 E-value=61 Score=24.16 Aligned_cols=47 Identities=19% Similarity=0.452 Sum_probs=35.7
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCC-cHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNE-NVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~-~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
.+..+.+....||++++-.++.+. ..++++.+.+. ..|++++-.++|
T Consensus 33 ~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred HHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCC
Confidence 567777788899999999988874 46777777664 467777776666
No 166
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=37.15 E-value=99 Score=27.43 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=34.6
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++++. +...+.. ..+.++.+...++|.||+.+...+...+.++.+.+.++|++.+
T Consensus 30 g~~~~~~-~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~ 87 (270)
T cd06308 30 DVELIIA-DAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILL 87 (270)
T ss_pred CcEEEEE-cCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHCCCCEEEe
Confidence 4566543 4433222 2345566667799999998754443345566666668898876
No 167
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=36.61 E-value=88 Score=28.08 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=42.3
Q ss_pred EEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCC-CCC--cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 40 RIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDF-GNE--NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 40 ril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl-~~~--~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
+.+.+=|.=-... +..++.+.....|+|++.|=. +.. ..++++.+++.+.|++.-|||++.-
T Consensus 9 ~h~~liDP~k~~~-~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i 73 (232)
T PRK04169 9 LHVTLLDPDKPLP-DEALEAICESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIEGI 73 (232)
T ss_pred eEEEEECCCCCCC-HHHHHHHHhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCcccc
Confidence 3444445433333 334466667889999999976 322 3567788887789999999999964
No 168
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.04 E-value=98 Score=27.46 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=34.8
Q ss_pred ccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.++++++.+-.........++.+...++|.+|+.+.-.+.....++.+.+.++|++.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 29 GYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEE
Confidence 4667666443222122344555556789999887743333345667776668898765
No 169
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=35.98 E-value=1.1e+02 Score=29.20 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=41.3
Q ss_pred ccEEEEEeCCCCCc--------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC-CCCEEEE
Q 018902 38 VVRIVIVGDVHDDW--------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL-EFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~--------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l-~~Pi~~V 95 (349)
+||++++-|..+-. +..+.++.+.+.+||.|.+-.-+-. +..+.++.+-+. ++||+++
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVimv 80 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIMV 80 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCEEEEecccccccHHHHHHHHhcCCCCcEEEE
Confidence 36788888877621 2255677888889998888766643 456666666554 7888887
Q ss_pred cC
Q 018902 96 LG 97 (349)
Q Consensus 96 ~G 97 (349)
-.
T Consensus 81 ss 82 (350)
T COG2201 81 SS 82 (350)
T ss_pred ec
Confidence 65
No 170
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=35.32 E-value=85 Score=30.04 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=29.0
Q ss_pred HHHhhCCCCCEEEEcCCCC--CCcHHHHHHHHcCCCCEEEEcCC
Q 018902 57 SKALQLLKPDLVLFTGDFG--NENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~--~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
++.+.+.+||+||..+-.. +......+.|.++++|++++..+
T Consensus 114 ~E~Ilal~PDLVi~~~~~~~~~~~~~~~~~L~~~Gipvv~~~~~ 157 (374)
T PRK14048 114 FETILTLKADLAILANWQADTEAGQRAIEYLESIGVPVIVVDFN 157 (374)
T ss_pred HHHHhhcCCCEEEecCcccccccchhHHHHHHHCCCCEEEEeCC
Confidence 4556678999998754221 22346778888889999988643
No 171
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=34.94 E-value=1.9e+02 Score=25.37 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=35.9
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNH 99 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNH 99 (349)
.+++++ .+...+.. ..+.++.+...++|.||+.+-..+ ...++.+.+.++|++.+ +++
T Consensus 29 g~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~~~~~~~ipvv~~-~~~ 87 (268)
T cd01575 29 GYQLLL-GNTGYSPEREEELLRTLLSRRPAGLILTGLEHT--ERTRQLLRAAGIPVVEI-MDL 87 (268)
T ss_pred CCEEEE-ecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHhcCCCEEEE-ecC
Confidence 355544 33333322 245677777789999999874322 35566666668898877 544
No 172
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=34.71 E-value=63 Score=27.25 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=27.1
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.++.+.+.+||+||..+... .+..+.|.++.+|++.+.
T Consensus 52 n~E~l~~l~PDlii~~~~~~---~~~~~~l~~~gi~v~~~~ 89 (195)
T cd01143 52 NVEKIVALKPDLVIVSSSSL---AELLEKLKDAGIPVVVLP 89 (195)
T ss_pred CHHHHhccCCCEEEEcCCcC---HHHHHHHHHcCCcEEEeC
Confidence 44556668999988865432 346778888888888775
No 173
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=34.44 E-value=87 Score=23.13 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=29.8
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEE
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKA 93 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~ 93 (349)
+..++.++..++-+||++.|..++..+-+..+.+ ..+|++
T Consensus 14 ~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~ 54 (82)
T PRK13601 14 KQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIV 54 (82)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEE
Confidence 4577888888999999999999766555555544 368874
No 174
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=33.97 E-value=1.2e+02 Score=26.94 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=10.5
Q ss_pred CCCEEEEcCCCCC
Q 018902 89 EFPKAVILGNHDS 101 (349)
Q Consensus 89 ~~Pi~~V~GNHD~ 101 (349)
++||++|+||.=-
T Consensus 4 g~pVlFIhG~~Gs 16 (225)
T PF07819_consen 4 GIPVLFIHGNAGS 16 (225)
T ss_pred CCEEEEECcCCCC
Confidence 6899999997553
No 175
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=33.95 E-value=2.5e+02 Score=27.48 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=46.4
Q ss_pred CCccEEEEEeCCCCCc------ChHHHHHHhhCCCCCEEEEcCCCCCC-------------c----HH-----HHHHHHc
Q 018902 36 ASVVRIVIVGDVHDDW------DLQEDSKALQLLKPDLVLFTGDFGNE-------------N----VE-----IVQSVAE 87 (349)
Q Consensus 36 ~~~mril~iSDlH~~~------~~~~~~~~i~~~~pD~vI~~GDl~~~-------------~----~~-----~l~~l~~ 87 (349)
..+.+|++.|-.-+-. ...+.++.+++.++|++|.+|=+.|- . .+ +.-.|.+
T Consensus 302 ~q~~~iv~~sGPy~~~dd~s~~pl~~~id~vn~n~vdvlIl~GPFidi~h~li~~G~~~~t~~~~l~ElF~~r~tpiL~~ 381 (581)
T COG5214 302 NQPTSIVAFSGPYGPRDDLSGSPLFDAIDRVNANDVDVLILIGPFIDINHILIQYGATQSTPDSMLKELFIPRITPILDR 381 (581)
T ss_pred CCceEEEEEcCCCCCccccCcChHHHHHHHhccCCccEEEEeccccCcchhhhhhCCCCCCChhHHHHHHHHhhhHHHhc
Confidence 4568899998776642 23678999999999999999988751 0 11 2223344
Q ss_pred CCCC-EEEEcCCCCCC
Q 018902 88 LEFP-KAVILGNHDSW 102 (349)
Q Consensus 88 l~~P-i~~V~GNHD~~ 102 (349)
+..| .+.||--.|..
T Consensus 382 ~~~p~~vLIPstnDa~ 397 (581)
T COG5214 382 NAGPKAVLIPSTNDAT 397 (581)
T ss_pred cCCCceEEeccccchh
Confidence 4556 88899877765
No 176
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=33.01 E-value=1.2e+02 Score=26.76 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=34.7
Q ss_pred HHHHHhhCCCCCEEEEcCCC-CC-C-cHHHHHHHHc-CCCCEEEEcCCCCCC
Q 018902 55 EDSKALQLLKPDLVLFTGDF-GN-E-NVEIVQSVAE-LEFPKAVILGNHDSW 102 (349)
Q Consensus 55 ~~~~~i~~~~pD~vI~~GDl-~~-~-~~~~l~~l~~-l~~Pi~~V~GNHD~~ 102 (349)
++.+.+.....|++++.|=. ++ + ..++++.+++ .++|++.-|||++.-
T Consensus 15 ~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i 66 (205)
T TIGR01769 15 KIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGL 66 (205)
T ss_pred HHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCcccc
Confidence 34456667789999999874 22 2 3456777777 479999999999953
No 177
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=32.85 E-value=48 Score=32.88 Aligned_cols=47 Identities=26% Similarity=0.464 Sum_probs=32.6
Q ss_pred HHHHHHhhCCCCCEEEEcCCCC--CC--cHHHHHHHHcC--CCCEEEEcCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFG--NE--NVEIVQSVAEL--EFPKAVILGNHDS 101 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~--~~--~~~~l~~l~~l--~~Pi~~V~GNHD~ 101 (349)
+..++.|...+||.|+++|=.= +. .....+.|+++ .+| +++.||-|.
T Consensus 110 ~~~l~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~p-IIyAGN~~a 162 (463)
T TIGR01319 110 NKDIEAIEESNLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCA-IIVAGNKDI 162 (463)
T ss_pred HHHHHHHhhcCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCc-EEEeCCHHH
Confidence 5667888889999999999643 32 13445556654 466 566799885
No 178
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=32.26 E-value=1.6e+02 Score=25.74 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=35.4
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++.++. ...+.. ..+.++.+...++|.+|+++... ....++.+.+.++|++.+
T Consensus 29 g~~~~~~~-~~~~~~~~~~~i~~l~~~~~dgii~~~~~~--~~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 29 GYQMLLMN-TNFSIEKEIEALELLARQKVDGIILLATTI--TDEHREAIKKLNVPVVVV 84 (259)
T ss_pred CCEEEEEe-CCCCHHHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHhcCCCCEEEE
Confidence 46665543 333222 24566677778999999987542 245667777668898877
No 179
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=31.92 E-value=1.2e+02 Score=23.46 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=33.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
+...+.+...++-+||++-|...+..+-++.+.+ ..+|++.. |+-|
T Consensus 23 ~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~-~t~~ 69 (104)
T PRK05583 23 NKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEG-YSKE 69 (104)
T ss_pred HHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe-cCHH
Confidence 4567778888999999999999887666655543 47887555 5443
No 180
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.63 E-value=1.7e+02 Score=25.91 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=36.2
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~G 97 (349)
++.++++ +...+.. ..+.++.+...++|.+|+.+=..+. ....++.+.+.++|++++-.
T Consensus 29 g~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~ 91 (273)
T cd06292 29 GYTVLLC-NTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNG 91 (273)
T ss_pred CCEEEEE-eCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcC
Confidence 4566543 3333322 2456777778899999998633222 23456667666899888743
No 181
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=30.71 E-value=2.4e+02 Score=27.31 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHhCC-CCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCC
Q 018902 175 RIYKVALGT-PDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKE 250 (349)
Q Consensus 175 ~l~~~l~~~-~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~ 250 (349)
.+...+... ...+.+|++.|+. .+|.... ...-.+...+++. .++++|+.+|-|..
T Consensus 212 ~~~~~v~~a~k~adlviv~~HwG-------------~ey~~~p----~~~q~~~a~~lid---AGa~iIvGhhpHvl 268 (372)
T COG2843 212 RVLAAVLAAKKGADLVIVQPHWG-------------VEYAYEP----AAGQRALARRLID---AGADIIVGHHPHVL 268 (372)
T ss_pred hhHHHHHhhhccCCEEEEecccc-------------ccccCCC----cHHHHHHHHHHHh---cCcCeEecCCCCcC
Confidence 333443333 3467889999983 2333211 0112233334443 47999999999998
No 182
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=30.48 E-value=1.7e+02 Score=25.65 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=35.5
Q ss_pred CccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 37 SVVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.++.+++..+-.......+.++.+...++|.+|+.|... ....++.+.+.++|++.+
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 28 HGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH--SPALLDLLARRGVPYVAT 84 (268)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHhCCCCEEEE
Confidence 346776654332222223456666677899999887543 235566676678998876
No 183
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=30.29 E-value=97 Score=27.79 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCC---cHHHHHHHH-cCCCCEEEEcCCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNE---NVEIVQSVA-ELEFPKAVILGNHDSW 102 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~---~~~~l~~l~-~l~~Pi~~V~GNHD~~ 102 (349)
.+..+.+....-|+|++.|=..-. ..+.++.++ +.+.|++.-||||+.-
T Consensus 31 ~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~i 83 (240)
T COG1646 31 DEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGI 83 (240)
T ss_pred HHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhcc
Confidence 556677777889999999976322 456777777 6689999999999963
No 184
>PRK07714 hypothetical protein; Provisional
Probab=30.20 E-value=1.2e+02 Score=23.04 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEE
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVI 95 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V 95 (349)
+...+.++..++-+||++.|..++..+-++.+.. ..+|++.+
T Consensus 24 ~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 24 ELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred HHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 4567778888899999999999876665555543 37887654
No 185
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=30.16 E-value=45 Score=27.89 Aligned_cols=45 Identities=31% Similarity=0.426 Sum_probs=34.1
Q ss_pred HHHhhCCCCCEEEEcCCCCC--CcHHHHHHHHcCCCCEEEEcCCCCC
Q 018902 57 SKALQLLKPDLVLFTGDFGN--ENVEIVQSVAELEFPKAVILGNHDS 101 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~~--~~~~~l~~l~~l~~Pi~~V~GNHD~ 101 (349)
.+.+...++|++|++-|-++ +...++..+.+++.|++++.==.|.
T Consensus 71 ~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~ 117 (156)
T PF02421_consen 71 RDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDE 117 (156)
T ss_dssp HHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHH
T ss_pred HHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHH
Confidence 34555689999999999876 3456777888889998888755553
No 186
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=29.34 E-value=1.6e+02 Score=25.94 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=36.9
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNH 99 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNH 99 (349)
.+++++. +.-.+.. ..+.++.+...++|.+|+.+--.+...+.++.+.+.++|++.+ +++
T Consensus 30 ~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~-~~~ 90 (272)
T cd06301 30 GVELQFE-DAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYV-NRR 90 (272)
T ss_pred CcEEEEe-CCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEe-cCC
Confidence 4666664 3222221 2345666667799999987743333456677777778998866 554
No 187
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=28.86 E-value=1.4e+02 Score=23.52 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCC-cHHHHHHHHc-CCCCEEEEc
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNE-NVEIVQSVAE-LEFPKAVIL 96 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~-~~~~l~~l~~-l~~Pi~~V~ 96 (349)
....+.++..+.-+||+++|.... ...-+..+.+ .++|++++.
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~ 76 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVK 76 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeC
Confidence 456778888899999999999875 3455555544 478955544
No 188
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=28.04 E-value=1.2e+02 Score=22.61 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=32.1
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHH-HHHHH-cCCCCEEEEc
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEI-VQSVA-ELEFPKAVIL 96 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~-l~~l~-~l~~Pi~~V~ 96 (349)
.+..+.++..++-+||++.|.......- +..+. +.++|++.++
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 4567788888999999999999875443 55553 3478887776
No 189
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=27.62 E-value=1.4e+02 Score=23.43 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=33.9
Q ss_pred CCCCCcChHHHHHHhhC-CCCCEEEEcCCCCCC--cHHHHHHHHcCCCCEEEEcCCCC
Q 018902 46 DVHDDWDLQEDSKALQL-LKPDLVLFTGDFGNE--NVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 46 DlH~~~~~~~~~~~i~~-~~pD~vI~~GDl~~~--~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
++|.....+..++.+.. .+||+|.++.=..+. ..++.+.+++....+.+|.|.+-
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 20 AEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred eecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 34444555677777776 899999999833332 34566666664333555555544
No 190
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=27.41 E-value=1.1e+02 Score=27.98 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=27.3
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.++.+.+.+||+||..+... .+..+.|.++.+|++++.
T Consensus 83 n~E~I~al~PDlIi~~~~~~---~~~~~~l~~~gi~v~~~~ 120 (289)
T TIGR03659 83 DMEKIKSLKPTVVLSVTTLE---EDLGPKFKQLGVEATFLN 120 (289)
T ss_pred CHHHHhccCCcEEEEcCccc---HHHHHHHHHcCCcEEEEc
Confidence 45666678999999876543 345677777788887763
No 191
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.22 E-value=1.7e+02 Score=25.71 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=35.1
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+.+.+. +...+... .+.++.+...++|.+|+.+--.+...+.++.+.+.++|++.+
T Consensus 30 g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 30 GVEVIVL-DANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred CCEEEEE-cCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEe
Confidence 4666654 44433322 345555666789999887643333356667777778998866
No 192
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.16 E-value=1.6e+02 Score=26.56 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.+.++.+...++|.||+.+.-.+...+.++.+.+.++|++.+-.
T Consensus 45 ~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~ 88 (288)
T cd01538 45 ISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAGIPVIAYDR 88 (288)
T ss_pred HHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHCCCCEEEECC
Confidence 44566666789999998873333335677777777899888743
No 193
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=26.96 E-value=1.2e+02 Score=27.34 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=27.6
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.++.+.+.+||+||...+. ...+.++.|.++++|++++.
T Consensus 64 n~E~il~l~PDlVi~~~~~--~~~~~~~~L~~~gi~v~~~~ 102 (260)
T PRK03379 64 NLERIVALKPDLVLAWRGG--NAERQVDQLASLGIKVMWVD 102 (260)
T ss_pred CHHHHHhcCCCEEEEecCC--CcHHHHHHHHHCCCCEEEeC
Confidence 3555667899999875432 12456788888899999883
No 194
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=26.94 E-value=2.1e+02 Score=25.05 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=33.7
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+.+.+... +.+.. ..+.++.+...++|.||+++...+ .+.++.+.+.++|++.+
T Consensus 29 g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~~~~l~~~~ipvV~~ 84 (268)
T cd06298 29 KYNIILSNS-DNDKEKELKVLNNLLAKQVDGIIFMGGKIS--EEHREEFKRSPTPVVLA 84 (268)
T ss_pred CCeEEEEeC-CCCHHHHHHHHHHHHHhcCCEEEEeCCCCc--HHHHHHHhcCCCCEEEE
Confidence 456665542 33322 234566666789999999864322 35666676668898666
No 195
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=26.74 E-value=2.4e+02 Score=22.11 Aligned_cols=46 Identities=20% Similarity=0.034 Sum_probs=33.6
Q ss_pred hHHHHHHhhCCCCCEEEEcCCCCCC---cHHHHHHHHcCC--CCEEEEcCC
Q 018902 53 LQEDSKALQLLKPDLVLFTGDFGNE---NVEIVQSVAELE--FPKAVILGN 98 (349)
Q Consensus 53 ~~~~~~~i~~~~pD~vI~~GDl~~~---~~~~l~~l~~l~--~Pi~~V~GN 98 (349)
.+++++.+.+.+||+|++++-.... ..++++.|.+.. ...+++-|+
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 3778888889999999999977543 345666776652 345777777
No 196
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.56 E-value=1.7e+02 Score=25.91 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=34.0
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++.+. +.-.... ....++.+...++|.||+.+--.+...+.++.+.+.++|++.+
T Consensus 34 g~~~~~~-~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 34 DVEFILV-TASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred CeEEEEE-cCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCeEEEE
Confidence 3565554 3332222 2445666777889999987632233345566666668998876
No 197
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=26.51 E-value=1.2e+02 Score=26.67 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=21.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHcCCCCE--------------EEEcCCCCC
Q 018902 64 KPDLVLFTGDFGNENVEIVQSVAELEFPK--------------AVILGNHDS 101 (349)
Q Consensus 64 ~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi--------------~~V~GNHD~ 101 (349)
.||+||++.=.. ....+.+-.++++|+ |.||||.|-
T Consensus 114 ~Pdliiv~dp~~--~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds 163 (204)
T PRK04020 114 EPDVVVVTDPRG--DAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKG 163 (204)
T ss_pred CCCEEEEECCcc--cHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCch
Confidence 678777765322 234444445556665 467888874
No 198
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=26.24 E-value=2.3e+02 Score=24.82 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=35.1
Q ss_pred CccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 37 SVVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
..+.++++............++.+...++|.||+.+.-.+ ...++.+.+.++|++++
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~l~~~~ipvV~~ 84 (265)
T cd06299 28 AGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQS--AEQLEDLLKRGIPVVFV 84 (265)
T ss_pred cCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC--hHHHHHHHhCCCCEEEE
Confidence 3466666643221112244666777789999999875322 24567777778998766
No 199
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.20 E-value=2.2e+02 Score=25.00 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=27.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+.++.+....+|.||+.+-. ...+.++.+.+.++|++++
T Consensus 45 ~~~i~~l~~~~~dgiii~~~~--~~~~~~~~~~~~~iPvv~~ 84 (265)
T cd06285 45 RRAIEMLLDRRVDGLILGDAR--SDDHFLDELTRRGVPFVLV 84 (265)
T ss_pred HHHHHHHHHcCCCEEEEecCC--CChHHHHHHHHcCCCEEEE
Confidence 456777778899999987622 2224566676668898655
No 200
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=26.15 E-value=2.2e+02 Score=25.17 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=33.7
Q ss_pred ccEEEEE-eCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIV-GDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~i-SDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++.++ +|-. ..+.+.+.+...++|.||+.+...+ ...++.+...++|++++
T Consensus 40 g~~~~v~~~~~~---~~~~~~~~l~~~~~dgiii~~~~~~--~~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 40 GYDLLLSFVSSP---DRDWLARYLASGRADGVILIGQHDQ--DPLPERLAETGLPFVVW 93 (275)
T ss_pred CCEEEEEeCCch---hHHHHHHHHHhCCCCEEEEeCCCCC--hHHHHHHHhCCCCEEEE
Confidence 4565544 3322 2344555666789999999875433 34567777778998877
No 201
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=25.80 E-value=1.4e+02 Score=26.78 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=35.2
Q ss_pred ccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++++. +........+.++.+...++|.||+.+.-.+.....++.+.+.++|++.+
T Consensus 29 g~~~~~~-~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 29 GFTVVKI-DVPDGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred CCEEEEc-cCCCHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEe
Confidence 4565543 33321112345555667889999998743333456677777778998876
No 202
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=25.42 E-value=2.3e+02 Score=24.38 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=37.5
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
+..+.+. |...... ..+.++.+...++|.+|+.+....... .++.+.+.++|++.+-+.-+
T Consensus 29 g~~l~~~-~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 29 GYQVLLA-NSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-IVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred CCeEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-HHHHhhhcCCCEEEeccCCC
Confidence 3555544 3333322 244555555668999998875544333 56777767899988866655
No 203
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.25 E-value=2e+02 Score=25.39 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=33.9
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.+.+++... -.+.. ....++.+...++|.||+...-.+...+.++.+.+.++|++.+-.
T Consensus 29 g~~~~~~~~-~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 29 GGDLRVYDA-GGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred CCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecC
Confidence 466666532 22221 234555555668999988642222234566777777899887743
No 204
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=25.20 E-value=1.2e+02 Score=28.91 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=26.8
Q ss_pred HHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 57 SKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
++.+...+||+||..+.. ..+.++.|.+.++|++.+.
T Consensus 112 ~E~Il~l~PDLVi~~~~~---~~~~~~~L~~~gi~V~~~~ 148 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAV---AGDTVTRLREAGITVFHFP 148 (359)
T ss_pred HHHHhcCCCCEEEEcCCC---chHHHHHHHHCCCeEEEeC
Confidence 456667899999886532 2356788888889988774
No 205
>TIGR03868 F420-O_ABCperi proposed F420-0 ABC transporter, periplasmic F420-0 binding protein. This small clade of ABC-type transporter periplasmic binding protein components is found as a three gene cassette along with a permease (TIGR03869) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this periplasmic binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=25.18 E-value=72 Score=29.02 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=27.1
Q ss_pred HHHHhhCCCCCEEEEcCC--CCCCcHHHHHHHHcCCCCEEEEc
Q 018902 56 DSKALQLLKPDLVLFTGD--FGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.++.+.+.+||+||.... .........+.|.++++|++++|
T Consensus 70 n~E~i~~l~PDlvi~~~~~~~~~~~~~~~~~l~~~gipv~~~p 112 (287)
T TIGR03868 70 SPEAVLETEPDLVYAGWESNLTAEGAGERADLASLGVNTYVAP 112 (287)
T ss_pred CHhHhhcCCCCEEEeccccccCCCCCCCHHHHHHCCCeEEECc
Confidence 456667789999987422 22222345677788899998864
No 206
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.15 E-value=1.1e+02 Score=26.71 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=27.1
Q ss_pred HHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCC
Q 018902 58 KALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 58 ~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
+.+.+.+||+||..+.. ...+..+.+.+..+|++++...-.
T Consensus 54 E~i~~l~PDlIi~~~~~--~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFY--GQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp HHHHHT--SEEEEETTS--SCHHHHHHHHHTTSEEEEESSTTC
T ss_pred HHHHhCCCCEEEEeccc--cchHHHHHHhcccceEEEeecccc
Confidence 44556899999998887 334555555566899988776653
No 207
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=24.94 E-value=1.2e+02 Score=27.52 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=22.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHcCCCCE--------------EEEcCCCCCC
Q 018902 64 KPDLVLFTGDFGNENVEIVQSVAELEFPK--------------AVILGNHDSW 102 (349)
Q Consensus 64 ~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi--------------~~V~GNHD~~ 102 (349)
.||+||++. -.. ..+.++.-+++++|+ |.||||.|-.
T Consensus 118 ~P~llIV~D-p~~-d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~ 168 (249)
T PTZ00254 118 EPRLLIVTD-PRT-DHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGK 168 (249)
T ss_pred CCCEEEEeC-CCc-chHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchH
Confidence 688888774 222 234444445556664 4678888853
No 208
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.59 E-value=2.7e+02 Score=24.28 Aligned_cols=61 Identities=8% Similarity=0.137 Sum_probs=37.1
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
.+++++. +...+.. ..+.++.+...++|.+|+.+-.. ...+.++.+.+.++|++.+-..++
T Consensus 29 g~~~~~~-~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-~~~~~~~~~~~~~ipvV~~~~~~~ 90 (268)
T cd06289 29 GYTVFLA-NSGEDVERQEQLLSTMLEHGVAGIILCPAAG-TSPDLLKRLAESGIPVVLVAREVA 90 (268)
T ss_pred CCeEEEe-cCCCChHHHHHHHHHHHHcCCCEEEEeCCCC-ccHHHHHHHHhcCCCEEEEeccCC
Confidence 4566554 3322222 24566777778999999987422 223466777767899888744433
No 209
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=24.55 E-value=2.5e+02 Score=24.49 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=34.7
Q ss_pred CccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 37 SVVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
..+++.+...-+......+.++.+...++|.+|+...-.+ ..+.++.+.+.++|++++-
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 28 AGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAA-TSPALDLLDAERVPYVLAY 86 (266)
T ss_pred CCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-chHHHHHHhhCCCCEEEEe
Confidence 3466666543222222234566666789999988642222 2346677777789987773
No 210
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=24.39 E-value=1.7e+02 Score=28.09 Aligned_cols=39 Identities=13% Similarity=-0.007 Sum_probs=27.5
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
..+.+++.+||+||..| ...-...+......+++|+++.
T Consensus 81 ~~~~l~~~kPd~vi~~g-~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 81 VVQLAKQAKPDLLVGID-APDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHhcCCCEEEEeC-CCCccHHHHHHHhhCCCCEEEE
Confidence 34556678999999999 5554555655666678998754
No 211
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=24.16 E-value=1.9e+02 Score=26.27 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=36.0
Q ss_pred CccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 37 SVVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 37 ~~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
..+++.++.+...+.. ..+.++.+...++|.||+.+=-.+.....++.+.+.++|++.+
T Consensus 28 ~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v 87 (298)
T cd06302 28 LGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREAGIKVVTH 87 (298)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEE
Confidence 3466776554443322 2455666667789999997511222345667777778898776
No 212
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=24.15 E-value=1.9e+02 Score=29.33 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=41.5
Q ss_pred EEEEeCCCCCc------ChHHHHHHhhCCCCCEEEEcCCCCCC-------------cHH-----HHHHHHcCC---CCEE
Q 018902 41 IVIVGDVHDDW------DLQEDSKALQLLKPDLVLFTGDFGNE-------------NVE-----IVQSVAELE---FPKA 93 (349)
Q Consensus 41 il~iSDlH~~~------~~~~~~~~i~~~~pD~vI~~GDl~~~-------------~~~-----~l~~l~~l~---~Pi~ 93 (349)
|++.|=.-... ...++++.+++.+||++|++|=+.|. ..+ +...|..+. +.++
T Consensus 343 ivvasGPyt~sDnl~yepL~dll~~v~~~~pdvLIL~GPFlD~~h~~i~~~~~t~t~delF~~~i~~ile~~~~~~~~vV 422 (600)
T KOG1625|consen 343 IVVASGPYTASDNLSYEPLCDLLDYVNAERPDVLILFGPFLDSKHPLINKGALTITFDELFEKLILGILETLVGSKTQVV 422 (600)
T ss_pred EEEEecCccCccccchhHHHHHHHHHhcCCCCEEEEeccccCccChhhccCCcCccHHHHHHHHHHHHHHhccCCcceEE
Confidence 56666544432 23678999999999999999998862 122 222333332 3488
Q ss_pred EEcCCCCCCcc
Q 018902 94 VILGNHDSWKT 104 (349)
Q Consensus 94 ~V~GNHD~~~~ 104 (349)
.||-=.|....
T Consensus 423 lvPs~~Da~~~ 433 (600)
T KOG1625|consen 423 LVPSTNDALCL 433 (600)
T ss_pred EeccccccccC
Confidence 89987776543
No 213
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=24.13 E-value=1.2e+02 Score=27.16 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=36.6
Q ss_pred EEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHc-CCCCEEEEcCCCCCC
Q 018902 41 IVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAE-LEFPKAVILGNHDSW 102 (349)
Q Consensus 41 il~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~-l~~Pi~~V~GNHD~~ 102 (349)
.+.+=|.--. ..++.++.+.....|++++.|=..+ ...+.++.+++ .++|++.-|||.+.-
T Consensus 10 h~~liDPdK~-~~~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~~~~lPvilfPg~~~~v 72 (230)
T PF01884_consen 10 HATLIDPDKP-NPEEALEAACESGTDAIIVGGSDTGVTLDNVVALIKRVTDLPVILFPGSPSQV 72 (230)
T ss_dssp EEEEE-TTSS--HHHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHHHSSS-EEEETSTCCG-
T ss_pred eEEEECCCCC-CcHHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHhcCCCCEEEeCCChhhc
Confidence 4445555332 2356677777889999999998722 22344444444 479999999999964
No 214
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=23.86 E-value=2.6e+02 Score=25.42 Aligned_cols=57 Identities=32% Similarity=0.405 Sum_probs=37.5
Q ss_pred EEEEeCCCCCcC-------hHHHH-HHhhCCCCCEEEEcCCCCCC--cHHHHHHHHc-CCCCEEEEcC
Q 018902 41 IVIVGDVHDDWD-------LQEDS-KALQLLKPDLVLFTGDFGNE--NVEIVQSVAE-LEFPKAVILG 97 (349)
Q Consensus 41 il~iSDlH~~~~-------~~~~~-~~i~~~~pD~vI~~GDl~~~--~~~~l~~l~~-l~~Pi~~V~G 97 (349)
+.+++|+|.... .+... ..+....+|.|+++|.-+-. ..+.++.+++ .+.|+++=-|
T Consensus 141 v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSG 208 (254)
T PF03437_consen 141 VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSG 208 (254)
T ss_pred eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecC
Confidence 788889987432 13333 33356789999999998743 4555565554 4678876555
No 215
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.76 E-value=2.1e+02 Score=25.10 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=34.5
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
++.+++ .+...+.. ..+.++.+...++|.+|+.+--.+...+.++.+.+.++|++.+
T Consensus 29 g~~~~i-~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 29 KVNLIV-SIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITV 86 (267)
T ss_pred CCEEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEE
Confidence 355543 45433322 2445666667799999997732222345567776668898776
No 216
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=23.48 E-value=1.8e+02 Score=26.57 Aligned_cols=57 Identities=9% Similarity=0.048 Sum_probs=36.0
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+.+++. +...+.. ..+.++.+...++|.||+.+--.+.....++.+.+.++|++.+
T Consensus 28 g~~v~~~-~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~ 85 (302)
T TIGR02634 28 GAKVFVQ-SANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAY 85 (302)
T ss_pred CCEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEe
Confidence 4566554 4443332 2356667777899999998743333346677777778898776
No 217
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=23.41 E-value=1.9e+02 Score=25.19 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=31.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC------CcHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN------ENVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~------~~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
+++++.+....||++|+ |+.| ...++++.+.+. ..|++++-|..|
T Consensus 27 ~~~l~~~~~~~pd~vl~--dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~ 79 (207)
T PRK11475 27 SSFQDAMSRISFSAVIF--SLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDI 79 (207)
T ss_pred HHHHHHhccCCCCEEEe--eccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCC
Confidence 56677777778998886 5544 346777777653 578888887543
No 218
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.31 E-value=1.4e+02 Score=26.49 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=24.5
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEc
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVIL 96 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~ 96 (349)
.++.|.+.+||+||..+..... ...+.+.+ .++|++++.
T Consensus 66 n~E~i~~l~PDLIi~~~~~~~~--~~~~~l~~~~gipvv~~~ 105 (262)
T cd01147 66 NYEKIAALKPDVVIDVGSDDPT--SIADDLQKKTGIPVVVLD 105 (262)
T ss_pred CHHHHHhcCCCEEEEecCCccc--hhHHHHHHhhCCCEEEEe
Confidence 4555666899998876543221 34455544 578988775
No 219
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=23.28 E-value=2e+02 Score=24.83 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=34.7
Q ss_pred ccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 38 VVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 38 ~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
++++.+..+-.........++.+...++|.+|+.+....... ++.+.+.++|++.+-.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~--~~~~~~~~ipvv~~~~ 86 (264)
T cd06267 29 GYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL--LEELAALGIPVVLVDR 86 (264)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH--HHHHHHcCCCEEEecc
Confidence 456665533222111234555566679999998876644322 6667777899887643
No 220
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.14 E-value=2.1e+02 Score=25.07 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=38.5
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
+.+.++.|-..+... .+.++.+...++|.||+..--.+...+.++.+...++|++.+
T Consensus 29 ~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 29 YEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp CEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 445555666665532 345666667789998877544455568888888878998774
No 221
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.98 E-value=99 Score=28.32 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=29.5
Q ss_pred CCccEEEEEeCCCCCcCh---------------HHHHHHhhCCCCCEEEEcCCC
Q 018902 36 ASVVRIVIVGDVHDDWDL---------------QEDSKALQLLKPDLVLFTGDF 74 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~---------------~~~~~~i~~~~pD~vI~~GDl 74 (349)
..+|||.++||-|.-.+. ..+++.+....++.|+.+||.
T Consensus 103 ~PG~ki~I~SDghvFsD~I~Vdddh~s~Y~d~Lr~m~~~i~~~~i~kI~n~e~~ 156 (330)
T COG3207 103 APGAKITICSDGHVFSDLIRVDDDHISAYQDALRLMIEEIGATHIGKIFNLEDV 156 (330)
T ss_pred CCCCEEEEEeCCceehhhccccchhHHHHHHHHHHHHHHcCCCCccceeecchh
Confidence 456899999999974321 335666777788999999985
No 222
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=22.80 E-value=2.5e+02 Score=24.83 Aligned_cols=58 Identities=9% Similarity=-0.113 Sum_probs=35.9
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.+.+.++.+...... ..+.++.+...++|.+|+..--.+...+.++.+.+ ++|++.+-
T Consensus 28 g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~~ 86 (271)
T cd06314 28 GVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAA-GIKLITTD 86 (271)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhc-CCCEEEec
Confidence 456666643322222 24566667778999999886322223567777777 89988773
No 223
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.42 E-value=1.9e+02 Score=25.71 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=29.1
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+.++.+...++|.||+.+--.+...+.++.+.+.++|++.+
T Consensus 45 ~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (282)
T cd06318 45 IADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV 86 (282)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEe
Confidence 346667777899999987632333345667777778998877
No 224
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=22.38 E-value=2e+02 Score=25.44 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=32.4
Q ss_pred EEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 43 IVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 43 ~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.+.|...+.. ..+.++.+...++|.||+.+--.+...+.++.+.+.++|++.+-
T Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~ 92 (272)
T cd06300 38 IVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFD 92 (272)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEe
Confidence 3345544322 34556666667999999976211222346677777789988764
No 225
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=22.12 E-value=1.2e+02 Score=27.35 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.5
Q ss_pred CCCCEEEEcCCCCCCccc
Q 018902 88 LEFPKAVILGNHDSWKTQ 105 (349)
Q Consensus 88 l~~Pi~~V~GNHD~~~~~ 105 (349)
++..++++.|||+.....
T Consensus 126 inknvvvlagnhein~ng 143 (318)
T PF13258_consen 126 INKNVVVLAGNHEINFNG 143 (318)
T ss_pred cccceEEEecCceeccCc
Confidence 466799999999987554
No 226
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=21.96 E-value=1.9e+02 Score=25.29 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=23.0
Q ss_pred EEEEcCCC--CCCcHHHHHHHHcCCCCEEEEcC
Q 018902 67 LVLFTGDF--GNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 67 ~vI~~GDl--~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
+++.+||= +.....+++.+.+.++++-+|||
T Consensus 75 ~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPG 107 (229)
T TIGR01465 75 VRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPG 107 (229)
T ss_pred EEEeCcCccccccHHHHHHHHHHCCCCEEEECC
Confidence 57778993 45556777777776788888887
No 227
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=21.69 E-value=97 Score=27.85 Aligned_cols=37 Identities=24% Similarity=0.156 Sum_probs=23.9
Q ss_pred CEEEEcCCCCC---------C-c---HHHHHHHHcCCCCEEEEcCCCCCCc
Q 018902 66 DLVLFTGDFGN---------E-N---VEIVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 66 D~vI~~GDl~~---------~-~---~~~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
+-++++||..- . . .+.++.+..++...+++|| |++..
T Consensus 119 ~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~~~ 168 (248)
T TIGR03413 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCA-HEYTL 168 (248)
T ss_pred CCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCchH
Confidence 45899999641 1 1 2345566666666778899 98654
No 228
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.51 E-value=3e+02 Score=23.99 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=33.4
Q ss_pred ccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 38 VVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 38 ~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.+++++...-+........++.+...++|.||+.+--.+ ...++.+.+.++|++.+-.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~--~~~l~~~~~~~ipvV~~~~ 86 (267)
T cd06283 29 GYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNN--KELYQRLAKNGKPVVLVDR 86 (267)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCC--hHHHHHHhcCCCCEEEEcC
Confidence 356654432221112244566666789999988763222 2346666666899888744
No 229
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=21.33 E-value=3.2e+02 Score=24.27 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=31.9
Q ss_pred HHHHHhhCCCCCEEEEcCCCCC--CcHHHHHHHHcC--CCCEEEEcCCCCCC
Q 018902 55 EDSKALQLLKPDLVLFTGDFGN--ENVEIVQSVAEL--EFPKAVILGNHDSW 102 (349)
Q Consensus 55 ~~~~~i~~~~pD~vI~~GDl~~--~~~~~l~~l~~l--~~Pi~~V~GNHD~~ 102 (349)
++.+.+.....|+|++.|=..- ...+.++.+++. ..|++.-|||++.-
T Consensus 16 ~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~~~~Pvilfp~~~~~i 67 (219)
T cd02812 16 EIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRRPVPVILFPSNPEAV 67 (219)
T ss_pred HHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHhcCCCCEEEeCCCcccc
Confidence 3344444477899999997632 333444445443 48999999999954
No 230
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=21.14 E-value=2.3e+02 Score=26.66 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=29.2
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCC
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDS 101 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~ 101 (349)
+.+.++..+||+|+..| ...-...+.......++|+++..+|+.+
T Consensus 77 ~~~~l~~~kPdivi~~~-~~~~~~~~a~~a~~~~ip~i~~~~~~~~ 121 (380)
T PRK00025 77 LKRRLLAEPPDVFIGID-APDFNLRLEKKLRKAGIPTIHYVSPSVW 121 (380)
T ss_pred HHHHHHHcCCCEEEEeC-CCCCCHHHHHHHHHCCCCEEEEeCCchh
Confidence 34555677999999987 4332334444444458998888777753
No 231
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=20.97 E-value=3.2e+02 Score=21.36 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=39.0
Q ss_pred CccEEEEEeCCCCCcCh--------HHHHHHhhCCCCCEEEEcCCCCCC-cHHHHHHHHcCCCCEEEEc
Q 018902 37 SVVRIVIVGDVHDDWDL--------QEDSKALQLLKPDLVLFTGDFGNE-NVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~--------~~~~~~i~~~~pD~vI~~GDl~~~-~~~~l~~l~~l~~Pi~~V~ 96 (349)
+.+=|.+-||.|..+.. +++++.++. .+|++.||+... ..++...+.....|.+++.
T Consensus 18 K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 18 RFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLAMI 83 (116)
T ss_pred CEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHHHHHHHHhCCCCCCEEEEE
Confidence 33456667888876543 556677743 799999999864 4566666666678876665
No 232
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=20.82 E-value=3.2e+02 Score=24.96 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=26.0
Q ss_pred HHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 55 EDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 55 ~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
+.++.+...++|.||+.+.... ..+.++.+.+.++|++.+
T Consensus 108 ~~~~~l~~~~vdgiIi~~~~~~-~~~~~~~l~~~~iPvV~v 147 (328)
T PRK11303 108 RCAEHLLQRQVDALIVSTSLPP-EHPFYQRLQNDGLPIIAL 147 (328)
T ss_pred HHHHHHHHcCCCEEEEcCCCCC-ChHHHHHHHhcCCCEEEE
Confidence 3455555678999888764332 234566666668898776
No 233
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.77 E-value=2.2e+02 Score=25.93 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=34.7
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++.+. +.+.+.. ....++.+...++|.+|+.+.-.+.....++.+...++|++.+
T Consensus 31 g~~~~~~-~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 31 KVEFTFY-DAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred CeeEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHCCCCEEEe
Confidence 4555444 5554332 2345667777899998887632222345667776668897765
No 234
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=20.57 E-value=2.3e+02 Score=24.90 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=22.2
Q ss_pred EEEEcCCC--CCCcHHHHHHHHcCCCCEEEEcC
Q 018902 67 LVLFTGDF--GNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 67 ~vI~~GDl--~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
+++.+||= +.....+++.+.+.+.++-+|||
T Consensus 81 ~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPG 113 (236)
T TIGR01469 81 VRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPG 113 (236)
T ss_pred EEEeCcCcccccCHHHHHHHHHHCCCCEEEECC
Confidence 35778993 44556677777766778888988
No 235
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=20.55 E-value=3.2e+02 Score=25.23 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=25.9
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEE
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVI 95 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V 95 (349)
.+.++.+...++|.||+.+- +...+.++.+.. .++|++.+
T Consensus 105 ~~~i~~l~~~~vdgiii~~~--~~~~~~~~~l~~~~~iPvV~~ 145 (341)
T PRK10703 105 RAYLSMLAQKRVDGLLVMCS--EYPEPLLAMLEEYRHIPMVVM 145 (341)
T ss_pred HHHHHHHHHcCCCEEEEecC--CCCHHHHHHHHhcCCCCEEEE
Confidence 34566666778998877653 223355666666 58898876
No 236
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=20.39 E-value=84 Score=29.17 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=10.9
Q ss_pred CCCCEEEEcCCCC
Q 018902 63 LKPDLVLFTGDFG 75 (349)
Q Consensus 63 ~~pD~vI~~GDl~ 75 (349)
..+|+|+++||-.
T Consensus 15 d~lDvilVtGDAY 27 (302)
T PF08497_consen 15 DELDVILVTGDAY 27 (302)
T ss_pred ccccEEEEeCccc
Confidence 4789999999953
No 237
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=20.22 E-value=2.2e+02 Score=27.46 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCC---EEEEc
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFP---KAVIL 96 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~P---i~~V~ 96 (349)
.++.+.+.+.+||++|.. |.-+-...+.+.+.+.+.+ +|+|+
T Consensus 72 ~~~~~~~~~~~pd~vIlI-D~pgFNlrlak~lk~~~~~~~viyYI~ 116 (373)
T PF02684_consen 72 RKLVERIKEEKPDVVILI-DYPGFNLRLAKKLKKRGIPIKVIYYIS 116 (373)
T ss_pred HHHHHHHHHcCCCEEEEe-CCCCccHHHHHHHHHhCCCceEEEEEC
Confidence 345566678899977765 7777778899988887666 45565
No 238
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.20 E-value=3.6e+02 Score=23.66 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
...++.+...++|.||+.+...+ ...+++.+.+.++|++++
T Consensus 45 ~~~i~~l~~~~vdgii~~~~~~~-~~~~~~~~~~~~ipvV~i 85 (269)
T cd06281 45 LEILRSFEQRRMDGIIIAPGDER-DPELVDALASLDLPIVLL 85 (269)
T ss_pred HHHHHHHHHcCCCEEEEecCCCC-cHHHHHHHHhCCCCEEEE
Confidence 45666777789999998764322 245666776668898877
Done!