Query 018902
Match_columns 349
No_of_seqs 237 out of 2086
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yvt_A Hypothetical protein AQ 99.9 3.1E-23 1.1E-27 187.7 21.1 211 37-325 4-258 (260)
2 1uf3_A Hypothetical protein TT 99.9 1.5E-22 5E-27 179.2 20.0 188 37-276 4-207 (228)
3 3d03_A Phosphohydrolase; glyce 99.9 4.6E-22 1.6E-26 181.0 21.7 225 39-325 1-251 (274)
4 3ib7_A ICC protein; metallopho 99.9 3.4E-22 1.2E-26 186.9 19.6 230 36-327 23-277 (330)
5 3rl5_A Metallophosphoesterase 99.9 1.8E-21 6.3E-26 178.7 16.2 197 35-276 56-275 (296)
6 2nxf_A Putative dimetal phosph 99.8 1.7E-20 5.7E-25 174.1 17.3 233 37-325 4-310 (322)
7 1z2w_A Vacuolar protein sortin 99.8 3.4E-20 1.2E-24 160.9 17.9 164 36-328 8-177 (192)
8 2a22_A Vacuolar protein sortin 99.8 8.9E-20 3.1E-24 161.1 19.4 173 38-328 25-201 (215)
9 1ute_A Protein (II purple acid 99.8 5.3E-19 1.8E-23 163.4 19.8 247 36-325 4-287 (313)
10 1s3l_A Hypothetical protein MJ 99.8 4.4E-19 1.5E-23 153.7 17.1 64 38-103 25-89 (190)
11 2xmo_A LMO2642 protein; phosph 99.8 4.6E-19 1.6E-23 172.9 19.3 238 35-325 36-329 (443)
12 3av0_A DNA double-strand break 99.8 2.5E-19 8.4E-24 172.0 15.7 69 36-104 18-110 (386)
13 2q8u_A Exonuclease, putative; 99.8 3E-19 1E-23 168.1 14.7 226 35-320 15-270 (336)
14 3tgh_A Glideosome-associated p 99.8 8.9E-19 3E-23 164.8 13.0 234 37-324 2-289 (342)
15 4fbk_A DNA repair and telomere 99.8 2.8E-17 9.6E-22 158.9 23.1 237 31-343 69-376 (472)
16 3t1i_A Double-strand break rep 99.8 1.3E-17 4.3E-22 160.8 19.9 220 36-328 30-321 (431)
17 3ck2_A Conserved uncharacteriz 99.8 3.2E-18 1.1E-22 146.3 14.1 157 37-328 5-162 (176)
18 3tho_B Exonuclease, putative; 99.8 3.2E-18 1.1E-22 163.8 14.7 63 39-102 1-91 (379)
19 1xzw_A Purple acid phosphatase 99.8 2.5E-17 8.6E-22 159.9 20.3 205 36-275 124-360 (426)
20 2kkn_A Uncharacterized protein 99.8 2.1E-17 7.2E-22 141.6 17.4 63 37-102 21-86 (178)
21 1nnw_A Hypothetical protein; s 99.8 4.2E-18 1.4E-22 153.6 13.5 65 38-102 1-76 (252)
22 4fbw_A DNA repair protein RAD3 99.8 5.5E-17 1.9E-21 155.7 21.7 218 36-325 11-299 (417)
23 3qfm_A SAPH, putative uncharac 99.7 5.5E-17 1.9E-21 148.1 16.4 67 35-102 8-78 (270)
24 1ii7_A MRE11 nuclease; RAD50, 99.7 1.2E-16 4.1E-21 150.2 18.1 65 39-103 1-89 (333)
25 2qfp_A Purple acid phosphatase 99.7 8.7E-17 3E-21 156.0 17.2 204 36-275 117-353 (424)
26 3rqz_A Metallophosphoesterase; 99.7 8.6E-18 3E-22 151.3 8.0 63 37-102 2-68 (246)
27 1su1_A Hypothetical protein YF 99.7 3.7E-16 1.3E-20 137.1 15.4 65 38-102 25-101 (208)
28 1xm7_A Hypothetical protein AQ 99.7 1.2E-15 4.1E-20 132.4 15.1 65 38-102 1-84 (195)
29 1hp1_A 5'-nucleotidase; metall 99.5 6.8E-12 2.3E-16 124.5 21.8 66 36-102 6-95 (516)
30 1g5b_A Serine/threonine protei 99.4 1.2E-12 4.1E-17 115.6 12.7 65 36-102 10-79 (221)
31 2wdc_A SOXB, sulfur oxidation 99.3 2.4E-10 8.1E-15 114.4 22.0 192 56-326 110-329 (562)
32 3qfk_A Uncharacterized protein 99.3 4.9E-10 1.7E-14 111.4 22.1 206 36-276 17-267 (527)
33 2z1a_A 5'-nucleotidase; metal- 99.2 1.2E-09 4E-14 109.3 22.5 67 36-103 27-120 (552)
34 2qjc_A Diadenosine tetraphosph 99.1 5.8E-11 2E-15 107.6 7.2 62 39-102 19-85 (262)
35 3ive_A Nucleotidase; structura 99.1 4.1E-09 1.4E-13 104.3 21.2 67 36-103 4-98 (509)
36 3ztv_A NAD nucleotidase, NADN; 99.1 6.6E-09 2.3E-13 104.3 21.5 65 37-102 11-106 (579)
37 2yeq_A Apased, PHOD, alkaline 99.1 2E-09 7E-14 106.8 17.6 203 37-251 115-385 (527)
38 4h2g_A 5'-nucleotidase; dimer, 99.0 7.9E-09 2.7E-13 103.1 17.0 67 36-103 23-119 (546)
39 3gve_A YFKN protein; alpha-bet 98.9 1.8E-07 6.2E-12 87.7 21.0 66 37-103 10-113 (341)
40 1wao_1 Serine/threonine protei 98.8 1.1E-08 3.8E-13 100.3 11.3 66 37-102 211-285 (477)
41 3jyf_A 2',3'-cyclic nucleotide 98.8 5.5E-07 1.9E-11 84.3 22.0 66 37-103 7-106 (339)
42 3c9f_A 5'-nucleotidase; 2',3'- 98.8 2.3E-07 7.8E-12 92.5 18.4 67 36-103 13-108 (557)
43 2ie4_C PP2A-alpha;, serine/thr 98.7 9E-08 3.1E-12 88.3 11.4 69 36-104 47-123 (309)
44 2dfj_A Diadenosinetetraphospha 98.6 1.2E-08 4.1E-13 93.2 3.8 64 39-102 1-69 (280)
45 1t71_A Phosphatase, conserved 98.6 1.1E-06 3.9E-11 79.6 16.5 67 37-104 3-77 (281)
46 1t70_A Phosphatase; crystal, X 98.5 1E-05 3.5E-10 72.3 19.7 226 39-328 1-251 (255)
47 4h1s_A 5'-nucleotidase; hydrol 98.5 3.4E-06 1.2E-10 83.7 17.4 65 38-103 3-97 (530)
48 2z06_A Putative uncharacterize 98.5 1.9E-05 6.4E-10 70.4 19.5 226 39-328 1-248 (252)
49 2z72_A Protein-tyrosine-phosph 98.3 5.8E-07 2E-11 84.3 5.0 72 32-103 64-154 (342)
50 1fjm_A Protein serine/threonin 98.2 1E-06 3.5E-11 81.9 5.7 67 37-103 55-129 (330)
51 3h63_A Serine/threonine-protei 98.2 2.2E-06 7.4E-11 79.0 6.9 67 37-103 58-133 (315)
52 3icf_A PPT, serine/threonine-p 98.1 4.2E-06 1.4E-10 77.7 6.8 67 37-103 62-137 (335)
53 3e7a_A PP-1A, serine/threonine 98.1 3.1E-06 1.1E-10 77.4 5.0 66 38-103 55-128 (299)
54 3ll8_A Serine/threonine-protei 98.0 5.2E-06 1.8E-10 77.5 5.1 66 38-103 69-142 (357)
55 1aui_A Calcineurin, serine/thr 97.9 8.7E-06 3E-10 79.2 5.0 68 36-103 80-155 (521)
56 3e0j_A DNA polymerase subunit 96.3 0.01 3.6E-07 57.2 8.2 67 36-103 198-310 (476)
57 3flo_A DNA polymerase alpha su 93.1 0.15 5.1E-06 49.0 6.6 68 36-103 145-248 (460)
58 2lpm_A Two-component response 88.7 0.97 3.3E-05 35.1 6.3 68 32-101 2-91 (123)
59 4e7p_A Response regulator; DNA 79.9 4.4 0.00015 31.4 6.6 68 33-100 15-105 (150)
60 2d00_A V-type ATP synthase sub 79.4 3.2 0.00011 31.4 5.3 64 37-100 2-84 (109)
61 3t8y_A CHEB, chemotaxis respon 72.3 4.9 0.00017 31.9 5.0 77 25-101 12-110 (164)
62 3r0j_A Possible two component 72.2 7.3 0.00025 33.3 6.4 67 35-101 20-107 (250)
63 3hzh_A Chemotaxis response reg 71.3 5.8 0.0002 31.1 5.2 65 36-100 34-122 (157)
64 3aon_B V-type sodium ATPase su 66.6 3.9 0.00013 31.3 2.9 64 39-102 3-83 (115)
65 2pln_A HP1043, response regula 65.5 10 0.00035 28.6 5.3 64 34-100 14-97 (137)
66 2rdm_A Response regulator rece 64.6 20 0.00069 26.4 6.9 66 36-101 3-91 (132)
67 2z72_A Protein-tyrosine-phosph 64.4 7.3 0.00025 35.7 4.9 41 226-276 268-308 (342)
68 3nhm_A Response regulator; pro 63.9 19 0.00064 26.7 6.6 48 54-101 37-89 (133)
69 3eod_A Protein HNR; response r 63.6 27 0.00092 25.7 7.5 64 37-100 6-90 (130)
70 3gt7_A Sensor protein; structu 63.4 23 0.00077 27.4 7.2 65 36-100 5-92 (154)
71 3kht_A Response regulator; PSI 63.0 20 0.00069 27.1 6.7 47 54-100 41-92 (144)
72 2zay_A Response regulator rece 62.6 17 0.00059 27.5 6.3 64 37-100 7-93 (147)
73 3hv2_A Response regulator/HD d 60.7 22 0.00077 27.2 6.7 66 35-100 11-97 (153)
74 3hdg_A Uncharacterized protein 60.0 11 0.00039 28.2 4.7 65 36-100 5-90 (137)
75 3h5i_A Response regulator/sens 58.7 24 0.00081 26.6 6.4 67 36-102 3-91 (140)
76 3cg4_A Response regulator rece 57.7 22 0.00074 26.7 6.0 67 36-102 5-94 (142)
77 3cz5_A Two-component response 56.2 30 0.001 26.4 6.7 47 54-100 41-90 (153)
78 3v7e_A Ribosome-associated pro 54.3 9.6 0.00033 27.0 3.0 47 54-100 17-64 (82)
79 2kqs_B Death domain-associated 53.5 7.5 0.00026 21.1 1.7 19 32-50 6-24 (26)
80 2ov6_A V-type ATP synthase sub 51.9 7.2 0.00025 29.0 2.1 41 59-99 39-81 (101)
81 3e3m_A Transcriptional regulat 50.5 1.3E+02 0.0046 26.6 15.5 39 55-95 117-155 (355)
82 3grc_A Sensor protein, kinase; 50.3 24 0.00081 26.5 5.1 64 37-100 5-91 (140)
83 2qxy_A Response regulator; reg 49.9 27 0.00093 26.2 5.4 46 54-100 38-86 (142)
84 1k66_A Phytochrome response re 49.5 43 0.0015 25.0 6.6 65 36-100 4-103 (149)
85 3w01_A Heptaprenylglyceryl pho 49.2 38 0.0013 29.2 6.6 63 39-102 12-77 (235)
86 3to5_A CHEY homolog; alpha(5)b 49.2 35 0.0012 26.3 5.9 67 34-100 8-98 (134)
87 2qvg_A Two component response 48.3 37 0.0013 25.3 6.0 67 34-100 3-100 (143)
88 3jte_A Response regulator rece 47.4 40 0.0014 25.2 6.1 47 54-100 37-88 (143)
89 3psh_A Protein HI_1472; substr 46.5 28 0.00095 31.0 5.6 41 57-100 77-117 (326)
90 3iz5_f 60S ribosomal protein L 45.9 19 0.00067 27.1 3.7 47 54-100 32-79 (112)
91 3tlk_A Ferrienterobactin-bindi 45.9 24 0.00081 31.6 5.1 41 57-98 108-148 (326)
92 3qk7_A Transcriptional regulat 44.9 1.5E+02 0.005 25.4 13.1 43 53-97 54-96 (294)
93 3g1w_A Sugar ABC transporter; 44.1 46 0.0016 28.8 6.6 60 38-97 34-94 (305)
94 3eul_A Possible nitrate/nitrit 44.1 39 0.0013 25.7 5.6 66 35-100 12-100 (152)
95 2xzm_U Ribosomal protein L7AE 43.9 42 0.0014 25.8 5.5 48 54-101 30-79 (126)
96 3hh1_A Tetrapyrrole methylase 43.8 42 0.0014 25.1 5.5 42 55-97 71-116 (117)
97 3md9_A Hemin-binding periplasm 43.6 31 0.0011 29.4 5.3 40 56-97 51-90 (255)
98 3lte_A Response regulator; str 43.5 63 0.0021 23.6 6.5 47 54-100 40-90 (132)
99 3l6u_A ABC-type sugar transpor 41.1 56 0.0019 28.0 6.6 59 38-97 38-97 (293)
100 2r79_A Periplasmic binding pro 40.6 41 0.0014 29.3 5.7 40 56-97 51-90 (283)
101 3jy6_A Transcriptional regulat 39.9 71 0.0024 27.1 7.1 55 38-96 37-92 (276)
102 4hn9_A Iron complex transport 39.6 27 0.00092 31.4 4.4 36 57-96 109-144 (335)
103 3j21_Z 50S ribosomal protein L 39.4 39 0.0013 24.6 4.5 47 54-100 21-68 (99)
104 3dbi_A Sugar-binding transcrip 39.0 2E+02 0.0067 25.1 12.9 41 56-97 111-151 (338)
105 2r7a_A Bacterial heme binding 38.9 39 0.0013 28.8 5.2 40 56-97 51-90 (256)
106 3cpq_A 50S ribosomal protein L 38.7 29 0.001 25.9 3.8 44 54-97 27-71 (110)
107 3q9s_A DNA-binding response re 38.3 43 0.0015 28.4 5.3 65 37-101 36-120 (249)
108 2b4a_A BH3024; flavodoxin-like 37.9 57 0.002 24.1 5.5 67 35-101 12-101 (138)
109 3r5t_A Ferric vibriobactin ABC 37.6 26 0.0009 30.9 3.9 40 58-98 80-119 (305)
110 2rjn_A Response regulator rece 37.6 51 0.0017 25.0 5.3 64 37-100 6-90 (154)
111 3v7q_A Probable ribosomal prot 37.6 43 0.0015 24.5 4.5 43 54-96 25-68 (101)
112 2lbw_A H/ACA ribonucleoprotein 37.1 41 0.0014 25.6 4.4 47 54-100 26-74 (121)
113 2qr3_A Two-component system re 36.6 32 0.0011 25.5 3.9 47 54-100 37-91 (140)
114 3heb_A Response regulator rece 36.5 71 0.0024 24.1 6.0 39 62-100 57-100 (152)
115 3lua_A Response regulator rece 36.2 46 0.0016 24.8 4.7 47 54-100 39-92 (140)
116 3o74_A Fructose transport syst 36.0 1.9E+02 0.0064 24.0 13.9 57 38-96 32-89 (272)
117 2qv0_A Protein MRKE; structura 35.7 75 0.0026 23.6 5.9 63 36-98 7-92 (143)
118 2ioy_A Periplasmic sugar-bindi 35.6 78 0.0027 27.0 6.7 57 38-95 31-88 (283)
119 3kcn_A Adenylate cyclase homol 35.3 48 0.0016 25.1 4.7 47 54-100 37-87 (151)
120 1qkk_A DCTD, C4-dicarboxylate 35.2 44 0.0015 25.4 4.5 47 54-100 37-86 (155)
121 1w41_A 50S ribosomal protein L 35.2 42 0.0014 24.5 4.1 44 54-97 22-66 (101)
122 3on1_A BH2414 protein; structu 34.5 40 0.0014 24.6 3.9 43 54-96 24-67 (101)
123 2fn9_A Ribose ABC transporter, 34.2 85 0.0029 26.7 6.7 58 38-96 32-90 (290)
124 3m9w_A D-xylose-binding peripl 34.2 71 0.0024 27.7 6.2 61 38-99 32-93 (313)
125 1ys7_A Transcriptional regulat 33.1 98 0.0034 25.3 6.7 66 37-102 6-92 (233)
126 2vqe_B 30S ribosomal protein S 32.7 41 0.0014 29.4 4.2 37 63-101 157-207 (256)
127 1n2z_A Vitamin B12 transport p 32.5 43 0.0015 28.3 4.4 38 57-96 50-87 (245)
128 3hdv_A Response regulator; PSI 32.4 80 0.0027 23.1 5.5 64 37-100 6-92 (136)
129 3ndc_A Precorrin-4 C(11)-methy 32.2 63 0.0021 28.1 5.4 42 56-97 69-112 (264)
130 1rlg_A 50S ribosomal protein L 32.0 59 0.002 24.5 4.6 47 54-100 33-81 (119)
131 2ayx_A Sensor kinase protein R 32.0 92 0.0032 26.4 6.5 66 36-101 127-213 (254)
132 3cnb_A DNA-binding response re 31.8 92 0.0031 22.9 5.8 47 54-100 44-95 (143)
133 3gl9_A Response regulator; bet 31.3 1.3E+02 0.0045 21.5 6.6 47 54-100 36-87 (122)
134 3kto_A Response regulator rece 31.2 26 0.0009 26.2 2.5 47 54-100 40-91 (136)
135 3mm4_A Histidine kinase homolo 31.1 1.1E+02 0.0038 24.8 6.7 37 63-99 118-161 (206)
136 2q8p_A Iron-regulated surface 30.4 33 0.0011 29.3 3.3 38 57-97 53-90 (260)
137 2dri_A D-ribose-binding protei 30.1 97 0.0033 26.2 6.3 57 38-95 31-88 (271)
138 3tb6_A Arabinose metabolism tr 30.0 1.1E+02 0.0037 26.0 6.7 44 55-98 62-108 (298)
139 3gbv_A Putative LACI-family tr 29.9 84 0.0029 26.8 5.9 47 54-100 59-105 (304)
140 3rqi_A Response regulator prot 29.9 62 0.0021 25.7 4.7 64 37-100 6-90 (184)
141 3jyw_G 60S ribosomal protein L 29.7 48 0.0016 25.1 3.6 49 54-102 31-81 (113)
142 3vzx_A Heptaprenylglyceryl pho 29.5 74 0.0025 27.2 5.2 63 39-102 7-72 (228)
143 4e16_A Precorrin-4 C(11)-methy 29.5 75 0.0026 27.3 5.4 41 57-97 71-113 (253)
144 3gv0_A Transcriptional regulat 29.2 97 0.0033 26.4 6.2 56 38-96 40-96 (288)
145 1k68_A Phytochrome response re 29.0 1.3E+02 0.0044 21.8 6.2 47 54-100 38-96 (140)
146 2ale_A SNU13, NHP2/L7AE family 28.6 42 0.0014 26.2 3.2 47 54-100 38-86 (134)
147 2qzj_A Two-component response 28.3 99 0.0034 22.8 5.4 47 54-100 38-86 (136)
148 2e0n_A Precorrin-2 C20-methylt 27.8 79 0.0027 27.2 5.3 44 54-97 87-132 (259)
149 1vi6_A 30S ribosomal protein S 27.8 86 0.0029 26.4 5.2 29 64-94 115-143 (208)
150 3f6p_A Transcriptional regulat 27.7 1.5E+02 0.005 21.2 6.2 47 54-100 36-84 (120)
151 1yio_A Response regulatory pro 27.6 1.3E+02 0.0046 24.0 6.5 49 54-102 38-89 (208)
152 2h3h_A Sugar ABC transporter, 27.6 1.5E+02 0.005 25.6 7.2 59 38-96 30-89 (313)
153 4hwg_A UDP-N-acetylglucosamine 27.5 54 0.0018 30.2 4.3 41 56-98 86-126 (385)
154 3kjx_A Transcriptional regulat 27.4 1.2E+02 0.0041 26.7 6.7 38 56-95 116-153 (344)
155 2vk2_A YTFQ, ABC transporter p 27.4 97 0.0033 26.7 5.9 58 38-96 32-90 (306)
156 3rot_A ABC sugar transporter, 27.2 89 0.003 26.8 5.6 61 38-98 33-95 (297)
157 2qbu_A Precorrin-2 methyltrans 26.7 1E+02 0.0034 25.8 5.7 41 57-97 88-130 (232)
158 1vq8_F 50S ribosomal protein L 26.7 64 0.0022 24.3 3.9 47 54-100 35-83 (120)
159 3t6k_A Response regulator rece 26.7 1.5E+02 0.0052 21.7 6.3 48 54-101 38-90 (136)
160 1xbi_A 50S ribosomal protein L 25.9 53 0.0018 24.9 3.3 47 54-100 35-83 (120)
161 3bbl_A Regulatory protein of L 25.7 2E+02 0.0067 24.4 7.6 55 38-95 38-93 (287)
162 3i42_A Response regulator rece 25.6 1.1E+02 0.0037 22.0 5.2 49 54-102 37-90 (127)
163 2ybo_A Methyltransferase; SUMT 25.6 1.1E+02 0.0037 27.0 5.8 40 58-97 97-138 (294)
164 2fc3_A 50S ribosomal protein L 25.5 65 0.0022 24.5 3.8 47 54-100 34-82 (124)
165 1cbf_A Cobalt-precorrin-4 tran 25.4 1E+02 0.0035 26.9 5.6 42 56-97 86-129 (285)
166 3bch_A 40S ribosomal protein S 25.2 93 0.0032 27.0 5.1 28 64-93 151-178 (253)
167 3h5o_A Transcriptional regulat 25.0 1.2E+02 0.0041 26.7 6.1 38 56-95 110-147 (339)
168 3ilh_A Two component response 25.0 1.4E+02 0.0047 21.9 5.8 64 37-100 8-103 (146)
169 3ksm_A ABC-type sugar transpor 25.0 96 0.0033 26.0 5.3 44 55-98 49-93 (276)
170 8abp_A L-arabinose-binding pro 24.9 82 0.0028 27.0 4.9 57 38-96 32-89 (306)
171 3nut_A Precorrin-3 methylase; 24.8 78 0.0027 27.1 4.6 43 55-97 70-118 (251)
172 2xzm_B RPS0E; ribosome, transl 24.6 75 0.0026 27.4 4.4 28 64-93 114-141 (241)
173 3o85_A Ribosomal protein L7AE; 24.4 96 0.0033 23.5 4.5 47 54-100 37-85 (122)
174 2fvy_A D-galactose-binding per 24.2 1.1E+02 0.0037 26.2 5.6 55 40-95 35-90 (309)
175 1ve2_A Uroporphyrin-III C-meth 24.1 87 0.003 26.4 4.8 42 57-98 72-115 (235)
176 3u5c_A 40S ribosomal protein S 24.1 1.1E+02 0.0037 26.6 5.2 37 64-102 117-167 (252)
177 2j48_A Two-component sensor ki 23.9 1.3E+02 0.0044 20.8 5.2 48 54-101 35-87 (119)
178 1wyz_A Putative S-adenosylmeth 23.9 80 0.0027 26.9 4.5 43 54-97 74-120 (242)
179 3d02_A Putative LACI-type tran 23.8 76 0.0026 27.2 4.5 59 38-96 34-93 (303)
180 1s4d_A Uroporphyrin-III C-meth 23.5 1.3E+02 0.0045 26.2 5.9 43 56-98 85-129 (280)
181 3k9c_A Transcriptional regulat 23.4 1.1E+02 0.0037 26.2 5.4 41 53-96 55-95 (289)
182 1gud_A ALBP, D-allose-binding 23.4 1E+02 0.0036 26.3 5.3 41 55-95 50-90 (288)
183 3egc_A Putative ribose operon 23.3 97 0.0033 26.4 5.0 59 38-99 38-97 (291)
184 1va0_A Uroporphyrin-III C-meth 23.2 1.1E+02 0.0037 25.9 5.2 32 67-98 79-112 (239)
185 3l49_A ABC sugar (ribose) tran 23.0 63 0.0021 27.6 3.7 59 38-97 35-94 (291)
186 3cg0_A Response regulator rece 22.9 1.2E+02 0.0041 22.1 5.0 65 36-100 7-93 (140)
187 2zkq_b 40S ribosomal protein S 22.9 89 0.0031 27.8 4.6 28 64-93 118-145 (295)
188 3kke_A LACI family transcripti 22.7 2.1E+02 0.0072 24.5 7.2 42 54-97 61-102 (303)
189 2fep_A Catabolite control prot 22.7 1.6E+02 0.0056 25.0 6.4 55 38-95 46-101 (289)
190 3hcw_A Maltose operon transcri 22.7 1.4E+02 0.0046 25.6 5.9 42 54-97 58-99 (295)
191 2aif_A Ribosomal protein L7A; 22.6 78 0.0027 24.5 3.8 46 54-99 47-94 (135)
192 2etv_A Iron(III) ABC transport 22.4 68 0.0023 28.9 3.9 38 58-98 90-127 (346)
193 3g9q_A Ferrichrome-binding pro 22.1 57 0.0019 28.1 3.2 38 56-98 63-100 (279)
194 2pl1_A Transcriptional regulat 22.1 2.1E+02 0.0071 20.0 6.2 47 54-100 34-83 (121)
195 3uug_A Multiple sugar-binding 21.9 90 0.0031 27.2 4.6 58 38-96 33-91 (330)
196 3e61_A Putative transcriptiona 21.6 82 0.0028 26.6 4.2 39 54-96 54-93 (277)
197 2zkr_f 60S ribosomal protein L 21.6 1E+02 0.0034 27.0 4.5 47 54-100 141-189 (266)
198 2wi8_A Iron-uptake system-bind 21.3 94 0.0032 27.3 4.6 35 58-96 90-124 (311)
199 3f6c_A Positive transcription 21.2 86 0.0029 22.8 3.7 46 56-101 38-86 (134)
200 3k4h_A Putative transcriptiona 21.2 1.6E+02 0.0056 24.8 6.1 43 54-98 59-101 (292)
201 2f6u_A GGGPS, (S)-3-O-geranylg 21.1 3.3E+02 0.011 23.1 7.8 61 37-100 7-72 (234)
202 3h5t_A Transcriptional regulat 20.9 1.8E+02 0.006 25.8 6.5 41 53-95 117-157 (366)
203 3j20_B 30S ribosomal protein S 20.9 1.4E+02 0.0046 25.0 5.1 36 64-101 111-160 (202)
204 3huu_A Transcription regulator 20.9 1.3E+02 0.0043 25.9 5.3 42 55-98 74-115 (305)
205 1mjh_A Protein (ATP-binding do 20.5 2.3E+02 0.0079 21.5 6.4 9 89-97 151-159 (162)
206 1mvo_A PHOP response regulator 20.4 1.8E+02 0.0062 20.9 5.5 48 54-101 37-87 (136)
207 2gkg_A Response regulator homo 20.2 92 0.0031 22.2 3.7 46 54-100 39-90 (127)
208 2rgy_A Transcriptional regulat 20.2 2.2E+02 0.0074 24.1 6.7 55 38-95 38-96 (290)
209 3n53_A Response regulator rece 20.1 1.1E+02 0.0039 22.4 4.3 49 54-102 36-89 (140)
210 3m6m_D Sensory/regulatory prot 20.0 1.5E+02 0.005 22.1 5.0 65 36-100 12-101 (143)
No 1
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=99.91 E-value=3.1e-23 Score=187.74 Aligned_cols=211 Identities=13% Similarity=0.145 Sum_probs=125.8
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcH--------------------------------HHHH
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENV--------------------------------EIVQ 83 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~--------------------------------~~l~ 83 (349)
.+|||+++||+|++... +++++.++..++|+||++||+++... ++++
T Consensus 4 ~~mri~~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 83 (260)
T 2yvt_A 4 MPRKVLAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFR 83 (260)
T ss_dssp CCCEEEEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHH
Confidence 36899999999998764 66777777779999999999998642 2455
Q ss_pred HHHcCCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCC----cceeeEE-eecCCceEEEeCCeeeecCCchhhhhh
Q 018902 84 SVAELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGE----EHVAYRR-LDFPTLKLSIVGGRPFSCGGQQIFRKR 158 (349)
Q Consensus 84 ~l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~-l~~~~~~i~~~g~~~~~~~g~~~~~~~ 158 (349)
.|.+++.|+++|+||||..... .+...+...+. ....... +...++.+.++|+.... .
T Consensus 84 ~l~~~~~pv~~v~GNHD~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~g~~~~~~~-~-------- 146 (260)
T 2yvt_A 84 EIGELGVKTFVVPGKNDAPLKI--------FLRAAYEAETAYPNIRVLHEGFAGWRGEFEVIGFGGLLTE-H-------- 146 (260)
T ss_dssp HHHTTCSEEEEECCTTSCCHHH--------HHHHHHHTTTTCTTEEECSSEEEEETTTEEEEEECSEEES-S--------
T ss_pred HHHhcCCcEEEEcCCCCchhhh--------hHHHHhhhccCCcceEEecCcceEEECCEEEEecCCCcCC-C--------
Confidence 6666678999999999975321 11223332221 1111111 33445555555543211 0
Q ss_pred hhhhccCCcchH----HH-HHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHH
Q 018902 159 LLSVRYGVQDMD----ES-AKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWG-FGGGDHGDPDLAQAISLLK 232 (349)
Q Consensus 159 ~~~~~~~~~~~~----~~-~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~-~~~~~~G~~~~~~al~~l~ 232 (349)
.+..+++. +. ..++ +.+.+.+ ..++|+++|+||++... |+. ......|+. ++.+++
T Consensus 147 ----~~~~~~~~~~~~~~~~~~l-~~l~~~~-~~~~Il~~H~pp~~~~~--------d~~~~~~~~~~~~----~l~~~~ 208 (260)
T 2yvt_A 147 ----EFEEDFVLKYPRWYVEYIL-KFVNELK-PRRLVTIFYTPPIGEFV--------DRTPEDPKHHGSA----VVNTII 208 (260)
T ss_dssp ----CCBSSSSCEEEHHHHHHHG-GGGGGSC-CCEEEEEESSCCSCSST--------TCBTTBSCCCSCH----HHHHHH
T ss_pred ----CcCHHHHhhcchhhHHHHH-HHHHhcC-CCCEEEEECCCcccccc--------ccCcccccccCcH----HHHHHH
Confidence 01111111 11 1222 3333333 35689999999975411 111 111123664 444555
Q ss_pred HhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEE
Q 018902 233 ETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFT 312 (349)
Q Consensus 233 ~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 312 (349)
++ ++++++++||+| . +..+. +++.++|+|++.. .+|+
T Consensus 209 ~~--~~~~~vl~GH~H-~-----~~~~~-----~~~~~in~Gs~~~------------------------------g~~~ 245 (260)
T 2yvt_A 209 KS--LNPEVAIVGHVG-K-----GHELV-----GNTIVVNPGEFEE------------------------------GRYA 245 (260)
T ss_dssp HH--HCCSEEEECSSC-C-----EEEEE-----TTEEEEECCBGGG------------------------------TEEE
T ss_pred HH--hCCCEEEECCcc-C-----CcEEe-----CCEEEEeCCCCCC------------------------------CceE
Confidence 52 369999999999 4 23344 6889999998621 2799
Q ss_pred EEEEeCCeEeEEE
Q 018902 313 VVEILDGRIDKIA 325 (349)
Q Consensus 313 ~v~i~~~~v~~~~ 325 (349)
+|++++++++..+
T Consensus 246 ii~~~~~~~~~~~ 258 (260)
T 2yvt_A 246 FLDLTQHKIKLEQ 258 (260)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEEEcCCEEEeee
Confidence 9999998876543
No 2
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=99.90 E-value=1.5e-22 Score=179.21 Aligned_cols=188 Identities=16% Similarity=0.104 Sum_probs=107.4
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc------HHHHHHHHcCCCCEEEEcCCCCCCccccccc
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN------VEIVQSVAELEFPKAVILGNHDSWKTQEFSG 109 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~------~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~ 109 (349)
.+|||+++||+|++... +++++.++..++|+||++||+++.. .++++.|.+++.|+++|+||||....
T Consensus 4 ~~mri~~iSD~H~~~~~~~~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~----- 78 (228)
T 1uf3_A 4 TVRYILATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAPIW----- 78 (228)
T ss_dssp CCCEEEEEECCTTCHHHHHHHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSCSHH-----
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECCCCCchhH-----
Confidence 35899999999998653 4566666666899999999999753 24777787778899999999997532
Q ss_pred cchhHHHHHH--HH--hCCcceeeEEeecC-CceEEEeCCeeeecCCchhhhhhhhhhccCCcch----HHHHHHHHHHH
Q 018902 110 KKKDGVQLQL--EC--LGEEHVAYRRLDFP-TLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDM----DESAKRIYKVA 180 (349)
Q Consensus 110 ~~~~~~~~~l--~~--~~~~~~~~~~l~~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l 180 (349)
..+...+ .. .+............ ++.+.++++... ... .+..+++ .+......+.+
T Consensus 79 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~g~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~l 143 (228)
T 1uf3_A 79 ---EYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGGEIA-DEG-----------EPEEHEALRYPAWVAEYRLKAL 143 (228)
T ss_dssp ---HHHHHHHHHHHHCTTEEECBTSEEEETTTEEEEEECSEEE-SSS-----------CCBSSSSCEEEHHHHHHHHGGG
T ss_pred ---HHHHhhhhhhccCcceEEcccceEeeCCCcEEecCCCCcC-CCC-----------ccChhhcccchhhhHHHHHHHH
Confidence 0111111 00 01100000011112 445555554211 000 0111111 11111222333
Q ss_pred hCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEE
Q 018902 181 LGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKM 260 (349)
Q Consensus 181 ~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~ 260 (349)
.+.+ +.++|+++|+||+... ....|+.. +.+++++ .+++++++||+| . +..+.
T Consensus 144 ~~~~-~~~~il~~H~p~~~~~--------------~~~~~~~~----~~~~~~~--~~~~~~~~GH~H-~-----~~~~~ 196 (228)
T 1uf3_A 144 WELK-DYPKIFLFHTMPYHKG--------------LNEQGSHE----VAHLIKT--HNPLLVLVAGKG-Q-----KHEML 196 (228)
T ss_dssp GGSC-SCCEEEEESSCBCBTT--------------TBTTSBHH----HHHHHHH--HCCSEEEECCSS-C-----EEEEE
T ss_pred HhCC-CCCeEEEEccCcccCC--------------ccccCHHH----HHHHHHH--hCCCEEEEcccc-c-----Ccccc
Confidence 3333 3579999999986530 01124533 4445542 369999999999 4 22334
Q ss_pred EEEcCCceEEEeeccc
Q 018902 261 IVVGADSTIYLNGAIV 276 (349)
Q Consensus 261 ~~~~~~gt~yvn~g~~ 276 (349)
+++.++|+|++
T Consensus 197 -----~~~~~in~Gs~ 207 (228)
T 1uf3_A 197 -----GASWVVVPGDL 207 (228)
T ss_dssp -----TTEEEEECCBG
T ss_pred -----CCceEEEeccc
Confidence 68999999986
No 3
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=99.90 E-value=4.6e-22 Score=181.00 Aligned_cols=225 Identities=18% Similarity=0.169 Sum_probs=130.6
Q ss_pred cEEEEEeCCCCCcC-------------hHHHHHHhhCC--CCCEEEEcCCCCCCc-----HHHHHHHHcCCCCEEEEcCC
Q 018902 39 VRIVIVGDVHDDWD-------------LQEDSKALQLL--KPDLVLFTGDFGNEN-----VEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 39 mril~iSDlH~~~~-------------~~~~~~~i~~~--~pD~vI~~GDl~~~~-----~~~l~~l~~l~~Pi~~V~GN 98 (349)
|||+++||+|++.. .+++++.+++. ++|+||++||+++.. ..+.+.+.++++|+++|+||
T Consensus 1 mri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GN 80 (274)
T 3d03_A 1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGN 80 (274)
T ss_dssp CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCT
T ss_pred CEEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 79999999999851 24566667654 689999999999753 24566677778999999999
Q ss_pred CCCCccccccccchhHHHHHHHHh----CCc-ceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHH
Q 018902 99 HDSWKTQEFSGKKKDGVQLQLECL----GEE-HVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESA 173 (349)
Q Consensus 99 HD~~~~~~~~~~~~~~~~~~l~~~----~~~-~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
||.... +.+.+... ... ...+...+..++.+.++++... +. ..... ..+++
T Consensus 81 HD~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ld~~~~---~~-------~~~~~----~~~~~ 136 (274)
T 3d03_A 81 HDDKAL----------FLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRA---GT-------SKGWL----TDETI 136 (274)
T ss_dssp TSCHHH----------HHHHHGGGSGGGCSCGGGCCEEECSSSSEEEECCCCCT---TC-------SSBCC----CHHHH
T ss_pred CCCHHH----------HHHHhhhhhcCcccCCCceEEEEEeCCEEEEEEeCCCC---CC-------CCCee----CHHHH
Confidence 997421 11222110 110 0112233445566665554311 00 00011 12345
Q ss_pred HHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCccc
Q 018902 174 KRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAY 253 (349)
Q Consensus 174 ~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~ 253 (349)
+|+.+.+... +++++|+++|+||+..+....+. ....+. +.+.+++++.. +++++++||+|....
T Consensus 137 ~wl~~~l~~~-~~~~~iv~~H~p~~~~~~~~~~~--------~~~~~~----~~l~~~l~~~~-~v~~vl~GH~H~~~~- 201 (274)
T 3d03_A 137 SWLEAQLFEG-GDKPATIFMHHPPLPLGNAQMDP--------IACENG----HRLLALVERFP-SLTRIFCGHNHSLTM- 201 (274)
T ss_dssp HHHHHHHHHH-TTSCEEEEESSCSSCCSCTTTGG--------GSBTTT----HHHHHHHHHCT-TEEEEEECSSSSCEE-
T ss_pred HHHHHHHHhC-CCCCEEEEECCCCcccCCcccCc--------ccCcCH----HHHHHHHHhCC-CceEEEeCCCCCchh-
Confidence 6666665543 35679999999997653221110 001122 44556666321 699999999999832
Q ss_pred CCcceEEEEEcCCc-eEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEE
Q 018902 254 GNGLRKMIVVGADS-TIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIA 325 (349)
Q Consensus 254 ~~g~~~~~~~~~~g-t~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~ 325 (349)
... +| +.++|+|+........+. . ..++ .....+|.++++++++++...
T Consensus 202 ----~~~-----~g~~~~~~pg~~~~~~~~~~~--~-------~~~~-----~~~~~gy~i~~i~~~~~~~~~ 251 (274)
T 3d03_A 202 ----TQY-----RQALISTLPGTVHQVPYCHAD--T-------DPYY-----DLSPASCLMHRQVGEQWVSYQ 251 (274)
T ss_dssp ----EEE-----TTEEEEECCCSSCBCCCCSSC--C-------SCEE-----BCCCCEEEEEEEETTEEEEEE
T ss_pred ----heE-----CCEEEEEcCCcceeeccCCCc--c-------cccc-----ccCCCceEEEEEeCCcEEEEE
Confidence 112 34 677899886433222110 0 0000 135689999999999876544
No 4
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=99.89 E-value=3.4e-22 Score=186.86 Aligned_cols=230 Identities=15% Similarity=0.108 Sum_probs=134.3
Q ss_pred CCccEEEEEeCCCCCcC-------------hHHHHHHhhC--CCCCEEEEcCCCCCCc--------HHHHHHH-HcCCCC
Q 018902 36 ASVVRIVIVGDVHDDWD-------------LQEDSKALQL--LKPDLVLFTGDFGNEN--------VEIVQSV-AELEFP 91 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~-------------~~~~~~~i~~--~~pD~vI~~GDl~~~~--------~~~l~~l-~~l~~P 91 (349)
.++|||+++||+|++.. .+++++.+++ .++|+||++||+++.. .++++.+ .++++|
T Consensus 23 ~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~p 102 (330)
T 3ib7_A 23 RPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAE 102 (330)
T ss_dssp CCSEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 55799999999998421 2456677765 7999999999999852 1233333 224789
Q ss_pred EEEEcCCCCCCccccccccchhHHHHHHHHhCC-cceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchH
Q 018902 92 KAVILGNHDSWKTQEFSGKKKDGVQLQLECLGE-EHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMD 170 (349)
Q Consensus 92 i~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 170 (349)
+++|+||||.... +...+..... ....+..++..++.+.++++... +. ....-..
T Consensus 103 v~~v~GNHD~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~---~~-----------~~~~~~~ 158 (330)
T 3ib7_A 103 LVWVMGNHDDRAE----------LRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVP---GH-----------HHGEIRA 158 (330)
T ss_dssp EEECCCTTSCHHH----------HHHHHHCCCCCCSCCCEEEEETTEEEEECCCCCT---TC-----------CSBCCCH
T ss_pred EEEeCCCCCCHHH----------HHHHhcccccccCCcceEEEeCCEEEEEecCCCC---CC-----------CCCccCH
Confidence 9999999997321 2222321111 11112234445566655554311 00 0111123
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCC
Q 018902 171 ESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKE 250 (349)
Q Consensus 171 ~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~ 250 (349)
++++|+.+.+..... ..+|+++||||+..+.. +.......+ .+.+..+++ +++++++++||+|..
T Consensus 159 ~q~~wl~~~l~~~~~-~~~iv~~Hh~p~~~~~~--------~~~~~~~~~----~~~l~~~l~--~~~v~~v~~GH~H~~ 223 (330)
T 3ib7_A 159 SQLGWLAEELATPAP-DGTILALHHPPIPSVLD--------MAVTVELRD----QAALGRVLR--GTDVRAILAGHLHYS 223 (330)
T ss_dssp HHHHHHHHHTTSCCT-TCEEEECSSCSSCCSSG--------GGGGGSBSC----HHHHHHHHT--TSSEEEEEECSSSSC
T ss_pred HHHHHHHHHHHhccc-CCeEEEEECCCCCCCcc--------ccccccccC----HHHHHHHHh--ccCceEEEECCCCCc
Confidence 456788777776654 45899999999765221 111000112 255666776 568999999999998
Q ss_pred cccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEEEE
Q 018902 251 LAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIAER 327 (349)
Q Consensus 251 ~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~~ 327 (349)
. .... +|+.|+|+|+.-.........+ ..+. .....+|.+|++++++++.+...
T Consensus 224 ~-----~~~~-----~g~~~~~~gs~~~~~~~~~~~g--------~~~~-----~~~~~gy~iv~i~~~~~~~~~v~ 277 (330)
T 3ib7_A 224 T-----NATF-----VGIPVSVASATCYTQDLTVAAG--------GTRG-----RDGAQGCNLVHVYPDTVVHSVIP 277 (330)
T ss_dssp E-----EEEE-----TTEEEEECCCSSCEECTTSCTT--------CCCE-----ESCSCEEEEEEECSSCEEEEEEE
T ss_pred c-----cceE-----CCEEEEecCcceeccCCCCCCc--------ceec-----cCCCCceEEEEEECCCeEEEEec
Confidence 3 2233 6888888887533221111000 0000 13456899999999988665433
No 5
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=99.87 E-value=1.8e-21 Score=178.65 Aligned_cols=197 Identities=22% Similarity=0.264 Sum_probs=114.5
Q ss_pred CCCccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCCc-----HHHHHHHHcCC-CCEEEEcCCCCCCcccccc
Q 018902 35 SASVVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNEN-----VEIVQSVAELE-FPKAVILGNHDSWKTQEFS 108 (349)
Q Consensus 35 ~~~~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~~-----~~~l~~l~~l~-~Pi~~V~GNHD~~~~~~~~ 108 (349)
..+.|||+++||+|...... ...++|+||++|||++.. ..+++.|.+++ .++++|+||||.+....+.
T Consensus 56 ~~~~mri~~iSD~H~~~~~l------~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~~~~v~~V~GNHD~~~d~~~~ 129 (296)
T 3rl5_A 56 PAGHTRFVCISDTRSRTDGI------QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFM 129 (296)
T ss_dssp CTTEEEEEEEBCCTTCCTTC------CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTSCCSEEEECCCTTCGGGCHHHH
T ss_pred CCCCeEEEEEeeCCCCcchh------ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhCCCCeEEEEcCCcccccchhhh
Confidence 35669999999999987531 335899999999999852 35677788776 4589999999986543211
Q ss_pred ccc----hh---HH----HHHH---HH-h-CCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHH
Q 018902 109 GKK----KD---GV----QLQL---EC-L-GEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDES 172 (349)
Q Consensus 109 ~~~----~~---~~----~~~l---~~-~-~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 172 (349)
... .. .+ .... .. + +..++.-......++++.+.+.+|+...+. +......
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~i~Gl~i~Gsp~tP~~~~~~-----------f~~~~~~-- 196 (296)
T 3rl5_A 130 ADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWFNGWG-----------FNLPRGQ-- 196 (296)
T ss_dssp HHHTTSCGGGSHHHHTCCHHHHTTTGGGCTTSEECSSEEEEETTEEEEEECCBCC--CCT-----------TBCCTTH--
T ss_pred hhhhcccccccccccccccchhhhHhhhcCCeEEecCCcEEECCEEEEEecCCCCCCCcC-----------CCcchHH--
Confidence 000 00 00 0000 00 0 111222233344555555444455443222 2222221
Q ss_pred HHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCc
Q 018902 173 AKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGF-GGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKEL 251 (349)
Q Consensus 173 ~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~-~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~ 251 (349)
++.+....++ ....||++|.||++.. |+.. .+...|+..+.+.+. + +.++++++|||+|..
T Consensus 197 --~~~~~~~~ip-~~~dILvTH~PP~g~~---------D~~~~~~~~~G~~~L~~~i~---~--~~~p~l~v~GH~H~~- 258 (296)
T 3rl5_A 197 --SLLDKWNLIP-EGTDILMTHGPPLGFR---------DWVPKELQRVGCVELLNTVQ---R--RVRPKLHVFGGIHEG- 258 (296)
T ss_dssp --HHHHHHTTSC-TTCSEEEESSCBTTSS---------CEEGGGTEECSBHHHHHHHH---H--TTCCSEEEECSCGGG-
T ss_pred --HHHHHHhhCC-CCCeEEEECCCccccc---------cccccccCcCChHHHHHHHH---H--hcCCCEEEECCccCC-
Confidence 2222333443 4568999999998873 2221 122348855544432 3 356999999999998
Q ss_pred ccCCcceEEEEEcCCceEEEeeccc
Q 018902 252 AYGNGLRKMIVVGADSTIYLNGAIV 276 (349)
Q Consensus 252 ~~~~g~~~~~~~~~~gt~yvn~g~~ 276 (349)
.+..+. ++|.|+|+|++
T Consensus 259 ---~~~~~~-----g~t~vvNpGs~ 275 (296)
T 3rl5_A 259 ---YGTMTD-----GYTTYINASTC 275 (296)
T ss_dssp ---CEEEEC-----SSCEEEECBCS
T ss_pred ---CceEEE-----CCEEEEECCcC
Confidence 444444 78999999997
No 6
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=99.85 E-value=1.7e-20 Score=174.07 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=131.1
Q ss_pred CccEEEEEeCCCCCcC--------------------hHHHHHHhhCCCCCEEEEcCCCCCCcH-----------HHHHHH
Q 018902 37 SVVRIVIVGDVHDDWD--------------------LQEDSKALQLLKPDLVLFTGDFGNENV-----------EIVQSV 85 (349)
Q Consensus 37 ~~mril~iSDlH~~~~--------------------~~~~~~~i~~~~pD~vI~~GDl~~~~~-----------~~l~~l 85 (349)
..|||+++||+|++.. .+++++.+++.+||+||++||+++... .+.+.+
T Consensus 4 ~~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l 83 (322)
T 2nxf_A 4 PVFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAEL 83 (322)
T ss_dssp CSEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHH
T ss_pred CceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHH
Confidence 5699999999999762 134556666689999999999998632 245566
Q ss_pred HcCCCCEEEEcCCCCCCccccccccchhHHHHHHHH------------hCCcceeeEEeec-CCceEEEeCCeeeecCCc
Q 018902 86 AELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLEC------------LGEEHVAYRRLDF-PTLKLSIVGGRPFSCGGQ 152 (349)
Q Consensus 86 ~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~------------~~~~~~~~~~l~~-~~~~i~~~g~~~~~~~g~ 152 (349)
.++++|+++|+||||.+.... ..+...+.. +......+..++. +++.+.++++..+...+.
T Consensus 84 ~~~~~p~~~v~GNHD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~ld~~~~~~~~~ 157 (322)
T 2nxf_A 84 DACSVDVHHVWGNHEFYNFSR------PSLLSSRLNSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGR 157 (322)
T ss_dssp HTTCSEEEECCCHHHHHHCCH------HHHHTSTTCCCC------CEECGGGTCCCEEEEEETTEEEEECCTTSBCSSSS
T ss_pred HhcCCcEEEecCCCCcccCCH------HHHhhhhCCcccccccccccccCCCCceEEEEecCCCEEEEEEcCceeccccc
Confidence 667889999999999742110 011111100 0000011122232 455566555543321111
Q ss_pred hh----hh--hhhhh-------------------hc---cCCcchHHHHHHHHHHHhCCCC-CCeEEEEeccCCCCCCCC
Q 018902 153 QI----FR--KRLLS-------------------VR---YGVQDMDESAKRIYKVALGTPD-DHLVILLAHNGPSGLGSE 203 (349)
Q Consensus 153 ~~----~~--~~~~~-------------------~~---~~~~~~~~~~~~l~~~l~~~~~-~~~~Ilv~H~PP~~~g~~ 203 (349)
.. +. ..... .+ +...-..++++|+.+.+..... .+++|+++|+||+.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~q~~wL~~~L~~~~~~~~~~iv~~H~p~~~~~~~ 237 (322)
T 2nxf_A 158 EEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAAD 237 (322)
T ss_dssp CTTSHHHHHHHHHHHHHCCCTTCTTSCSCSSSGGGGCSTTCCBCCHHHHHHHHHHHHHHHHHTCEEEEEESSCCCTTSSC
T ss_pred CCCChhhHHHHHHHhhcCcccccccCccccccccccccccCCccCHHHHHHHHHHHHHHHhcCCcEEEEEccCCCCCCCC
Confidence 00 00 00000 00 0011113556777776665432 457899999999765321
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-CccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeecc
Q 018902 204 PNDICGKDWGFGGGDHGDPDLAQAISLLKETTKL-CIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRL 282 (349)
Q Consensus 204 ~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~-~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~ 282 (349)
. ....++. +.+..+++ ++ +++++++||+|.... ..+.+|+.|++.+++-.
T Consensus 238 ~----------~~~~~~~----~~~~~ll~--~~~~v~~~~~GH~H~~~~---------~~~~~g~~~i~~~~~~~---- 288 (322)
T 2nxf_A 238 P----------ICLAWNH----EAVLSVLR--SHQSVLCFIAGHDHDGGR---------CTDSSGAQHITLEGVIE---- 288 (322)
T ss_dssp G----------GGSCTTH----HHHHHHHH--TCTTEEEEEECSCTTCEE---------EECTTSCEEEECCCGGG----
T ss_pred c----------cccccCH----HHHHHHHh--cCCCeEEEEcCCcCCCCc---------eeccCCceEEEecchhh----
Confidence 1 0001122 45666776 44 699999999999832 11225777887776511
Q ss_pred CCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEE
Q 018902 283 IDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIA 325 (349)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~ 325 (349)
. .....+|.+|++++++++...
T Consensus 289 ~---------------------~~~~~~y~~v~~~~~~~~~~~ 310 (322)
T 2nxf_A 289 T---------------------PPHSHAFATAYLYEDRMVMKG 310 (322)
T ss_dssp C---------------------CTTSCEEEEEEECSSEEEEEE
T ss_pred C---------------------CCCCCcEEEEEEECCeEEEEe
Confidence 0 024478999999999887753
No 7
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=99.85 E-value=3.4e-20 Score=160.86 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=106.9
Q ss_pred CCccEEEEEeCCCCCcC----hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCCCccccccccc
Q 018902 36 ASVVRIVIVGDVHDDWD----LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDSWKTQEFSGKK 111 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~----~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~ 111 (349)
.++|||+++||+|++.. .+.+.+.++..++|+||++||+++ .+.++.|.++..|+++|+||||....
T Consensus 8 ~~mm~i~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~--~~~~~~l~~~~~~~~~v~GNhD~~~~------- 78 (192)
T 1z2w_A 8 RDRMLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT--KESYDYLKTLAGDVHIVRGDFDENLN------- 78 (192)
T ss_dssp ---CEEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS--HHHHHHHHHHCSEEEECCCTTCCCTT-------
T ss_pred ccceEEEEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC--HHHHHHHHhcCCCEEEEcCCcCcccc-------
Confidence 34589999999998642 244444445568999999999997 56677777767789999999997530
Q ss_pred hhHHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEE
Q 018902 112 KDGVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVIL 191 (349)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Il 191 (349)
+ +.... +.. +..+|+
T Consensus 79 ----------l------------p~~~~-------~~~------------------------------------~~~~i~ 93 (192)
T 1z2w_A 79 ----------Y------------PEQKV-------VTV------------------------------------GQFKIG 93 (192)
T ss_dssp ----------S------------CSEEE-------EEE------------------------------------TTEEEE
T ss_pred ----------C------------CcceE-------EEE------------------------------------CCEEEE
Confidence 0 00000 000 134799
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEE
Q 018902 192 LAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYL 271 (349)
Q Consensus 192 v~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yv 271 (349)
++|.+|+.. | .+ + +.+..++++ .+++++++||+|.+. ..+. +++.++
T Consensus 94 l~Hg~~~~~-----------~------~~-~---~~l~~~~~~--~~~d~vi~GHtH~~~-----~~~~-----~~~~~i 140 (192)
T 1z2w_A 94 LIHGHQVIP-----------W------GD-M---ASLALLQRQ--FDVDILISGHTHKFE-----AFEH-----ENKFYI 140 (192)
T ss_dssp EECSCCCCB-----------T------TC-H---HHHHHHHHH--HSSSEEECCSSCCCE-----EEEE-----TTEEEE
T ss_pred EECCCcCCC-----------C------CC-H---HHHHHHHHh--cCCCEEEECCcCcCc-----cEeE-----CCEEEE
Confidence 999876432 0 01 1 334445442 369999999999982 2233 689999
Q ss_pred eeccc--ceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEEEEe
Q 018902 272 NGAIV--PRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIAERW 328 (349)
Q Consensus 272 n~g~~--pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~~~ 328 (349)
|+|++ ||..++ +....+|+++++++++++.+...+
T Consensus 141 npGS~~~~~~~~~----------------------~~~~~~y~il~~~~~~~~~~~~~~ 177 (192)
T 1z2w_A 141 NPGSATGAYNALE----------------------TNIIPSFVLMDIQASTVVTYVYQL 177 (192)
T ss_dssp ECCCTTCCCCSSC----------------------SCCCCEEEEEEEETTEEEEEEEEE
T ss_pred ECCcccccCCCCC----------------------cCCCCcEEEEEEECCEEEEEEEEc
Confidence 99986 221101 133579999999999887765444
No 8
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=99.84 E-value=8.9e-20 Score=161.13 Aligned_cols=173 Identities=17% Similarity=0.196 Sum_probs=110.0
Q ss_pred ccEEEEEeCCCCCcCh----HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCCCccccccccchh
Q 018902 38 VVRIVIVGDVHDDWDL----QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDSWKTQEFSGKKKD 113 (349)
Q Consensus 38 ~mril~iSDlH~~~~~----~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~ 113 (349)
+|||+++||+|++... +.+.+.++..++|+||++||+++ .+.++.|.++..|+++|+||||...... ..
T Consensus 25 ~m~i~~iSD~H~~~~~~~l~~~l~~~~~~~~~D~vi~~GDl~~--~~~l~~l~~~~~~v~~V~GNHD~~~~~~-~~---- 97 (215)
T 2a22_A 25 GDLVLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCS--QEYVEMLKNITKNVYIVSGDLDSAIFNP-DP---- 97 (215)
T ss_dssp CEEEEEECCCCTTTTCSSCCGGGHHHHHCTTCCEEEECSCCCC--HHHHHHHHHHCSCEEECCCTTCCSCCBC-CG----
T ss_pred CcEEEEEecCCCCCChHHHHHHHHHHHhcCCCCEEEECCCCCC--HHHHHHHHHcCCCEEEecCCCcCccccc-Ch----
Confidence 4899999999987532 33444445678999999999997 5677777777789999999999764320 00
Q ss_pred HHHHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEe
Q 018902 114 GVQLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLA 193 (349)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~ 193 (349)
.+ +. ..+.. .. +. .+..+|+++
T Consensus 98 ---~~---~~---------~lp~~-~~------~~------------------------------------~~~~~i~l~ 119 (215)
T 2a22_A 98 ---ES---NG---------VFPEY-VV------VQ------------------------------------IGEFKIGLM 119 (215)
T ss_dssp ---GG---TB---------CCCSE-EE------EE------------------------------------ETTEEEEEE
T ss_pred ---hh---Hh---------hCCce-EE------Ee------------------------------------cCCeEEEEE
Confidence 00 00 00000 00 00 023589999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEee
Q 018902 194 HNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNG 273 (349)
Q Consensus 194 H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~ 273 (349)
|.+|+... .+ + +.+..++++ .+++++++||+|.+. ..+. +++.++|+
T Consensus 120 Hg~~~~~~-----------------~~-~---~~l~~~~~~--~~~d~vl~GHtH~~~-----~~~~-----~~~~~inp 166 (215)
T 2a22_A 120 HGNQVLPW-----------------DD-P---GSLEQWQRR--LDCDILVTGHTHKLR-----VFEK-----NGKLFLNP 166 (215)
T ss_dssp CSTTSSST-----------------TC-H---HHHHHHHHH--HTCSEEEECSSCCCE-----EEEE-----TTEEEEEC
T ss_pred cCCccCCC-----------------CC-H---HHHHHHHhh--cCCCEEEECCcCCCc-----cEee-----CCEEEEEC
Confidence 98764320 11 1 334445442 369999999999982 2233 68999999
Q ss_pred cccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEEEEe
Q 018902 274 AIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIAERW 328 (349)
Q Consensus 274 g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~~~ 328 (349)
|++-...... .+....+|+++++++++++.+...+
T Consensus 167 GS~~~~~~~~--------------------~~~~~~~y~il~i~~~~i~~~~~~~ 201 (215)
T 2a22_A 167 GTATGAFSAL--------------------TPDAPPSFMLMALQGNKVVLYVYDL 201 (215)
T ss_dssp CCSSCCCCTT--------------------STTCCCEEEEEEEETTEEEEEEEEE
T ss_pred CcccccCCCC--------------------CCCCCCcEEEEEEeCCcEEEEEEEe
Confidence 9862211000 0133579999999999887766555
No 9
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=99.82 E-value=5.3e-19 Score=163.38 Aligned_cols=247 Identities=14% Similarity=0.121 Sum_probs=128.8
Q ss_pred CCccEEEEEeCCCCCcC-------h----HHHHHHhhCCCCCEEEEcCCCCCC-------cHHHHHHHHc------C-CC
Q 018902 36 ASVVRIVIVGDVHDDWD-------L----QEDSKALQLLKPDLVLFTGDFGNE-------NVEIVQSVAE------L-EF 90 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~-------~----~~~~~~i~~~~pD~vI~~GDl~~~-------~~~~l~~l~~------l-~~ 90 (349)
.++|||+++||+|.+.. . +.+.+.++..+||+||++||++.. ..++.+.+.. + ++
T Consensus 4 ~~~~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (313)
T 1ute_A 4 TPILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNV 83 (313)
T ss_dssp CCCEEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTC
T ss_pred CCceEEEEEcccCCCCCccccCchHHHHHHHHHHHHHhcCCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCC
Confidence 46799999999999752 1 222333456799999999998421 2244444432 4 68
Q ss_pred CEEEEcCCCCCCccccccccchhHHHHHHH--H------hCCcceeeEE-eec--CCceEEEeCCeeeecCCchhhhhhh
Q 018902 91 PKAVILGNHDSWKTQEFSGKKKDGVQLQLE--C------LGEEHVAYRR-LDF--PTLKLSIVGGRPFSCGGQQIFRKRL 159 (349)
Q Consensus 91 Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~--~------~~~~~~~~~~-l~~--~~~~i~~~g~~~~~~~g~~~~~~~~ 159 (349)
|+++|+||||..... ...+. . ....++.+.. +.. ..+.+.++++..+... ...+....
T Consensus 84 p~~~v~GNHD~~~~~----------~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~lds~~~~~~-~~~~~~~~ 152 (313)
T 1ute_A 84 PWHVLAGNHDHLGNV----------SAQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGN-SDDFVSQQ 152 (313)
T ss_dssp CEEECCCHHHHHSCH----------HHHHHGGGTSTTEECCSSSEEEEEECTTSSCEEEEEECCHHHHHCC-GGGSTTCS
T ss_pred CEEEECCCCccCCCc----------cccccccccCCCccCcccceEEEEecCCCCceEEEEEEEChHHhCc-Cccccccc
Confidence 999999999975321 11110 0 0111111111 000 1333443433211100 00000000
Q ss_pred hhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc
Q 018902 160 LSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCI 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~ 239 (349)
........-..++++|+.+.+...+ .+++|+++|+||+..+.. .....+.+.+..+++ ++++
T Consensus 153 ~~~~~~~~~~~~q~~wL~~~L~~~~-~~~~iv~~H~p~~~~~~~---------------~~~~~~~~~l~~~l~--~~~v 214 (313)
T 1ute_A 153 PERPRNLALARTQLAWIKKQLAAAK-EDYVLVAGHYPVWSIAEH---------------GPTHCLVKQLLPLLT--THKV 214 (313)
T ss_dssp CCSCSCHHHHHHHHHHHHHHHHHCC-CSEEEEECSSCSSCCSSS---------------CCCHHHHHHTHHHHH--HTTC
T ss_pred cCCccccchHHHHHHHHHHHHHhCC-CCeEEEEECCCCccCCCC---------------CCcHHHHHHHHHHHH--HcCC
Confidence 0000001112456788888877665 478999999998765211 012345567777777 4579
Q ss_pred cEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCccc-ccccccCCCCCCceeeEEEEEEeC
Q 018902 240 PLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVS-NKTSFLRPDSKGTVRAFTVVEILD 318 (349)
Q Consensus 240 ~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~v~i~~ 318 (349)
+++++||+|.... ....+|+.|+++|+.......... ...+. +..+|.. .......+|++|++++
T Consensus 215 ~~~l~GH~H~~~~---------~~~~~g~~~i~~gs~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~gy~~l~v~~ 280 (313)
T 1ute_A 215 TAYLCGHDHNLQY---------LQDENGLGFVLSGAGNFMDPSKKH----LRKVPNGYLRFHF-GAENSLGGFAYVEITP 280 (313)
T ss_dssp SEEEECSSSSEEE---------EECTTCCEEEEECBSSCCCCCCTT----GGGSCTTCEEEEE-CCTTSCCEEEEEEECS
T ss_pred cEEEECChhhhhh---------ccCCCCceEEEECCCcCcCccccc----cccCCCcccceec-cCcCCCCceEEEEEEc
Confidence 9999999998621 112267889999875321100000 00000 0011100 0012347999999998
Q ss_pred CeEeEEE
Q 018902 319 GRIDKIA 325 (349)
Q Consensus 319 ~~v~~~~ 325 (349)
++++++-
T Consensus 281 ~~~~~~~ 287 (313)
T 1ute_A 281 KEMSVTY 287 (313)
T ss_dssp SCEEEEE
T ss_pred CEEEEEE
Confidence 8876643
No 10
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=99.82 E-value=4.4e-19 Score=153.66 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=52.8
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCCCc
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
+|||+++||+|++... +++++.++..++|+||++||+++. +.++.|.+++.|+++|+||||...
T Consensus 25 ~m~i~~iSD~Hg~~~~l~~~l~~~~~~~~D~ii~~GDl~~~--~~~~~l~~l~~~~~~V~GNhD~~~ 89 (190)
T 1s3l_A 25 HMKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSL--FVIKEFENLNANIIATYGNNDGER 89 (190)
T ss_dssp -CEEEEECCCTTCHHHHHHHHHHHHHSCCSEEEECSCCCST--HHHHHGGGCSSEEEEECCTTCCCH
T ss_pred CeEEEEEeeCCCCHHHHHHHHHHHhhcCCCEEEECCCCCCH--HHHHHHHhcCCCEEEEeCCCcchH
Confidence 4899999999976543 556677777899999999999975 678888877789999999999753
No 11
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=99.82 E-value=4.6e-19 Score=172.87 Aligned_cols=238 Identities=11% Similarity=0.031 Sum_probs=126.7
Q ss_pred CCCccEEEEEeCCCCCcC---------------------------hHHHHHHhhCCCCCEEEEcCCCCCCc-----H---
Q 018902 35 SASVVRIVIVGDVHDDWD---------------------------LQEDSKALQLLKPDLVLFTGDFGNEN-----V--- 79 (349)
Q Consensus 35 ~~~~mril~iSDlH~~~~---------------------------~~~~~~~i~~~~pD~vI~~GDl~~~~-----~--- 79 (349)
..++|||+++||+|++.. .+++++.++..+||+||++||+++.. .
T Consensus 36 ~~~~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~ 115 (443)
T 2xmo_A 36 KDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKTSHEELA 115 (443)
T ss_dssp SCCCEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHHTCSEEEEESCCBSSCCHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHH
Confidence 356799999999998632 13455566667899999999999742 2
Q ss_pred HHHHHHHcCCCCEEEEcCCCCCCccccc--cc--------cchhHHHHHHHHhCC--------cceeeEEeecCCceEEE
Q 018902 80 EIVQSVAELEFPKAVILGNHDSWKTQEF--SG--------KKKDGVQLQLECLGE--------EHVAYRRLDFPTLKLSI 141 (349)
Q Consensus 80 ~~l~~l~~l~~Pi~~V~GNHD~~~~~~~--~~--------~~~~~~~~~l~~~~~--------~~~~~~~l~~~~~~i~~ 141 (349)
+.++.+...++|+++|+||||....... .. .....+...+...+. ....|.....+++.+.+
T Consensus 116 ~~l~~l~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~ 195 (443)
T 2xmo_A 116 KKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYSDFGYEDAISSDEFSLSYLAAPSSKVWLLM 195 (443)
T ss_dssp HHHHHHHHTTCEEEEECCTTTSSCTTCEEEETTEEEECCCCCHHHHHHHTCCCCCTTCSEECSSSSCEEECSBSSEEEEE
T ss_pred HHHHHHHhCCCeEEEECCcCCCCCccccccCCcccccccccCHHHHHHHhhhcChhhhhccCCCCceEEEecCCCEEEEE
Confidence 2344444448899999999998643110 00 011223332221110 01123333345556665
Q ss_pred eCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCC-CCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018902 142 VGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTP-DDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHG 220 (349)
Q Consensus 142 ~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G 220 (349)
+++..+... .+..........+ .++++|+.+.+.... .+.++|+++|+||...+.. |.......+
T Consensus 196 Lds~~~~~~--~~~~~~~~~g~~~----~~ql~wL~~~L~~~~~~~~~~Iv~~H~p~~~~~~~--------~~~~~~~~~ 261 (443)
T 2xmo_A 196 LDTAIYKTN--MQQGNPTTEGGLT----AGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDV--------IQKGYTINY 261 (443)
T ss_dssp CCCBCCTTH--HHHTSCCCCBCCC----HHHHHHHHHHHHHHHHTTCEEEEECSSBSSCSSCC----------CCSBCTT
T ss_pred eeCCCcCcc--cccCCCCcCCccC----HHHHHHHHHHHHHHHHcCCeEEEEECCCCcccccc--------ccccccccc
Confidence 555321100 0000000001122 234566665555433 2457899999998754221 111000011
Q ss_pred CHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCccccccccc
Q 018902 221 DPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFL 300 (349)
Q Consensus 221 ~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
.+.+.++++ +++++++++||+|..... ..-..++.+...+++|++-
T Consensus 262 ----~~~l~~ll~--~~~v~lvl~GH~H~~~~~-----~~~~~~g~~~~~i~~gs~~----------------------- 307 (443)
T 2xmo_A 262 ----NQQVIDALT--EGAMDFSLSGHIHTQNIR-----SAKSTDGKEITDIVTNALS----------------------- 307 (443)
T ss_dssp ----HHHHHHHHH--HTTCCEEEECSSCSCEEE-----EEECTTSCEEEEEECCCTT-----------------------
T ss_pred ----HHHHHHHHH--HcCCeEEEECCcccCchh-----hcccCCCCceEEEEcCccc-----------------------
Confidence 245556666 347999999999998321 1100111135667777631
Q ss_pred CCCCCCceeeEEEEEEeCCe--EeEEE
Q 018902 301 RPDSKGTVRAFTVVEILDGR--IDKIA 325 (349)
Q Consensus 301 ~~~~~~~~~~f~~v~i~~~~--v~~~~ 325 (349)
..+.+|.++++++++ ++.+.
T Consensus 308 -----~~p~~y~il~i~~~~~~~~~~~ 329 (443)
T 2xmo_A 308 -----VFPHKYGNITYSAKNKNFTYQS 329 (443)
T ss_dssp -----STTCEEEEEEEETTTTEEEEEE
T ss_pred -----cCCCCeEEEEEeCCCceEEEEE
Confidence 133689999998876 44433
No 12
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=99.81 E-value=2.5e-19 Score=171.96 Aligned_cols=69 Identities=25% Similarity=0.366 Sum_probs=52.6
Q ss_pred CCccEEEEEeCCCCCcC--------------hHHHHHHhhCCCCCEEEEcCCCCCCc----------HHHHHHHHcCCCC
Q 018902 36 ASVVRIVIVGDVHDDWD--------------LQEDSKALQLLKPDLVLFTGDFGNEN----------VEIVQSVAELEFP 91 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~--------------~~~~~~~i~~~~pD~vI~~GDl~~~~----------~~~l~~l~~l~~P 91 (349)
.++|||+|+||+|++.. .+++++.++..+||+||++||+++.. .+.++.|...++|
T Consensus 18 ~~~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~p 97 (386)
T 3av0_A 18 GSHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIK 97 (386)
T ss_dssp CCCCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 45699999999999852 24566777788999999999999753 1234444444789
Q ss_pred EEEEcCCCCCCcc
Q 018902 92 KAVILGNHDSWKT 104 (349)
Q Consensus 92 i~~V~GNHD~~~~ 104 (349)
+++|+||||....
T Consensus 98 v~~v~GNHD~~~~ 110 (386)
T 3av0_A 98 VYIVAGNHEMPRR 110 (386)
T ss_dssp EEECCCGGGSCSS
T ss_pred EEEEcCCCCCCcc
Confidence 9999999998653
No 13
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=99.80 E-value=3e-19 Score=168.14 Aligned_cols=226 Identities=15% Similarity=0.095 Sum_probs=112.4
Q ss_pred CCCccEEEEEeCCCCC----cC-------------hHHHHHHhhCCCCCEEEEcCC-CCCCc---H----HHHHHHHcCC
Q 018902 35 SASVVRIVIVGDVHDD----WD-------------LQEDSKALQLLKPDLVLFTGD-FGNEN---V----EIVQSVAELE 89 (349)
Q Consensus 35 ~~~~mril~iSDlH~~----~~-------------~~~~~~~i~~~~pD~vI~~GD-l~~~~---~----~~l~~l~~l~ 89 (349)
..++|||+|+||+|++ .. .+++++.+++.+||+||++|| ++|.. . .+.+.|.++.
T Consensus 15 ~~~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~ 94 (336)
T 2q8u_A 15 NLKELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMM 94 (336)
T ss_dssp TCCEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHH
T ss_pred ecCceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3567999999999977 21 145666777789999999999 98742 1 2344444443
Q ss_pred --CCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcceeeEEeecCCceE-EEeCCeeeecCCchhhhhhhhhhccCC
Q 018902 90 --FPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHVAYRRLDFPTLKL-SIVGGRPFSCGGQQIFRKRLLSVRYGV 166 (349)
Q Consensus 90 --~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~i-~~~g~~~~~~~g~~~~~~~~~~~~~~~ 166 (349)
+|+++|+||||... . ..+...+...+.. +..+....... ..+.+..+.+.|.++.......... .
T Consensus 95 ~~~pv~~i~GNHD~~~-~-------~~~~~~l~~~g~n---v~v~~~~~~~~~~~~~~~~v~i~glp~~~~~~~~~~~-~ 162 (336)
T 2q8u_A 95 RTAPVVVLPGNHDWKG-L-------KLFGNFVTSISSD---ITFVMSFEPVDVEAKRGQKVRILPFPYPDESEALRKN-E 162 (336)
T ss_dssp HHSCEEECCC-------C-------HHHHHHHHHHCSS---EEECCSSSCEEEECTTSCEEEEEEECCC-------CC-S
T ss_pred hcCCEEEECCCCCccc-c-------ccHHHHHHhcCCE---EEEEecccccCceEEeCCCEEEEECCCCCHHHHHHHh-h
Confidence 89999999999864 1 1233444443310 11111111000 0000111222222111110000001 1
Q ss_pred cchHHHHHHHHHHHhCC--CCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEe
Q 018902 167 QDMDESAKRIYKVALGT--PDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVF 244 (349)
Q Consensus 167 ~~~~~~~~~l~~~l~~~--~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~ 244 (349)
....+...++.+.+... +++.++|+++|+|+.+..... ..... +. ..+...+. +.++|++++
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~Ill~H~~~~~~~~~~-----~~~~~----~~-----~~v~~~l~--~~~~d~v~~ 226 (336)
T 2q8u_A 163 GDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYA-----GIEQG----RE-----IIINRALI--PSVVDYAAL 226 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSSEEEEEEESEETTCC-----------------CC-----CEECGGGS--CTTSSEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEEECccccCCCCCC-----Cccch----hh-----cccCHHHc--cccCCEEEE
Confidence 22223344444444321 346789999999886531100 00000 00 00100111 347999999
Q ss_pred CccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCe
Q 018902 245 GHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGR 320 (349)
Q Consensus 245 GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~ 320 (349)
||+|.++. +. +++.++|+|+..+..+.+. +..++|.+|++++++
T Consensus 227 GH~H~~~~--------~~---~~~~i~y~GS~~~~s~~e~---------------------~~~~~~~lv~i~~~~ 270 (336)
T 2q8u_A 227 GHIHSFRE--------IQ---KQPLTIYPGSLIRIDFGEE---------------------ADEKGAVFVELKRGE 270 (336)
T ss_dssp ESCSSCEE--------EE---ETTEEEECCCSSCCSGGGT---------------------TCCCEEEEEEEETTS
T ss_pred ccccCceE--------eC---CCccEEECCCCcCCCcccc---------------------CCCCEEEEEEEeCCC
Confidence 99999832 11 2356789998755544442 335899999999764
No 14
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=99.78 E-value=8.9e-19 Score=164.83 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=130.2
Q ss_pred CccEEEEEeCCCCCcCh-----HHHHHHhhCCCCCEEEEcCCCCCCc------HHHHH---HH-----HcCCCCEEEEcC
Q 018902 37 SVVRIVIVGDVHDDWDL-----QEDSKALQLLKPDLVLFTGDFGNEN------VEIVQ---SV-----AELEFPKAVILG 97 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-----~~~~~~i~~~~pD~vI~~GDl~~~~------~~~l~---~l-----~~l~~Pi~~V~G 97 (349)
..+||+++||+|.+... +.+.+.++..+||+||++||+++.. .++.+ .+ ..+++|+++|+|
T Consensus 2 ~~l~f~~igD~g~g~~~q~~va~~m~~~~~~~~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~vlG 81 (342)
T 3tgh_A 2 CQLRFASLGDWGKDTKGQILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLG 81 (342)
T ss_dssp CCEEEEECCSCBSCCHHHHHHHHHHHHHHHHTTCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGTTCSEEEECCC
T ss_pred ceEEEEEEecCCCCCchHHHHHHHHHHHHhhcCCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhhhCCCEEEeCC
Confidence 35899999999987653 3344555678999999999988532 12222 22 234789999999
Q ss_pred CCCCCccccccccchhHHHH----------HHH----HhCC-------cceeeE-EeecC-------------CceEEEe
Q 018902 98 NHDSWKTQEFSGKKKDGVQL----------QLE----CLGE-------EHVAYR-RLDFP-------------TLKLSIV 142 (349)
Q Consensus 98 NHD~~~~~~~~~~~~~~~~~----------~l~----~~~~-------~~~~~~-~l~~~-------------~~~i~~~ 142 (349)
|||+...... ...+.. .++ .... .++.+. .+..+ .+.+.++
T Consensus 82 NHD~~~~~~a----q~~~~~~~~~~~~~~~~~~~~~~~~~~~rw~~P~~yY~~~~~f~~~~~~~~~~~g~~~~~v~fi~L 157 (342)
T 3tgh_A 82 TRDWTGNYNA----QLLKGQGIYIEKNGETSIEKDADATNYPKWIMPNYWYHYFTHFTVSSGPSIVKTGHKDLAAAFIFI 157 (342)
T ss_dssp HHHHTSCHHH----HHHHHHC---------------CCCSSCEEECSSSSEEEEEEEEEC---------CEEEEEEEEEC
T ss_pred CCccCCCchH----hhhhhhcccccccccccccccccccCCCCccCCcceEEEEEEeeccccccccccCCCCceEEEEEE
Confidence 9998754210 000000 000 0011 111110 00100 1233333
Q ss_pred CCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 018902 143 GGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDP 222 (349)
Q Consensus 143 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~ 222 (349)
++..+.. ...+ .........++++||.+.|.. .+++||++|+|++..+.. ....
T Consensus 158 DT~~l~~-~~~~-------~~~~~~~~~~Ql~WLe~~L~~---~~~~IV~~HhP~~~~~~~---------------~~~~ 211 (342)
T 3tgh_A 158 DTWVLSS-NFPY-------KKIHEKAWNDLKSQLSVAKKI---ADFIIVVGDQPIYSSGYS---------------RGSS 211 (342)
T ss_dssp CTTTTST-TCSC-------HHHHHHHHHHHHHHHHHHHHH---CSEEEEECSSCSSCSSTT---------------CCCH
T ss_pred eCccccc-CCcc-------cccchHHHHHHHHHHHHhhcc---CCcEEEEECCCCCCCCCC---------------CCcH
Confidence 3321110 0000 000112345678888888843 468999999998765211 0135
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCCccCCCCCcccccccccCC
Q 018902 223 DLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRP 302 (349)
Q Consensus 223 ~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~ 302 (349)
.+++.+..+++ +++++++++||+|.... ... +++.|+.+|+......... .-....+|
T Consensus 212 ~l~~~l~~ll~--~~~VdlvlsGH~H~~~~-----~~~-----~g~~~iv~Ga~g~~~~~~~-------~~~~~s~f--- 269 (342)
T 3tgh_A 212 YLAYYLLPLLK--DAEVDLYISGHDNNMEV-----IED-----NDMAHITCGSGSMSQGKSG-------MKNSKSLF--- 269 (342)
T ss_dssp HHHHHTHHHHH--HTTCCEEEECSSSSEEE-----EEE-----TTEEEEEECCSSCCCCCCS-------SCCTTEEE---
T ss_pred HHHHHHHHHHH--HcCCCEEEECCCcceeE-----Eee-----CCcEEEEeCccccccccCC-------CCCCccee---
Confidence 67788888988 55799999999999832 111 5688888877422111000 00000111
Q ss_pred CCCCceeeEEEEEEeCCeEeEE
Q 018902 303 DSKGTVRAFTVVEILDGRIDKI 324 (349)
Q Consensus 303 ~~~~~~~~f~~v~i~~~~v~~~ 324 (349)
..+..+|.++++++++++++
T Consensus 270 --~~~~~Gf~~l~v~~~~l~~~ 289 (342)
T 3tgh_A 270 --FSSDIGFCVHELSNNGIVTK 289 (342)
T ss_dssp --EECSSEEEEEEEETTEEEEE
T ss_pred --ecCCCcEEEEEEECCEEEEE
Confidence 13457999999998887653
No 15
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=99.78 E-value=2.8e-17 Score=158.90 Aligned_cols=237 Identities=18% Similarity=0.156 Sum_probs=126.9
Q ss_pred CCCCCCCccEEEEEeCCCCCcCh-------------HHHHHHhhCCCCCEEEEcCCCCCCc-------HHHHHHHHc---
Q 018902 31 APAMSASVVRIVIVGDVHDDWDL-------------QEDSKALQLLKPDLVLFTGDFGNEN-------VEIVQSVAE--- 87 (349)
Q Consensus 31 ~~~~~~~~mril~iSDlH~~~~~-------------~~~~~~i~~~~pD~vI~~GDl~~~~-------~~~l~~l~~--- 87 (349)
+.+...++|||+|+||+|++... +++++.++..+||+||++|||+|.. ..+++.|.+
T Consensus 69 ~~~~~~~~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~ps~~a~~~~~~~Lr~~~~ 148 (472)
T 4fbk_A 69 GSAGSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCL 148 (472)
T ss_dssp ----CTTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHB
T ss_pred cCCCCCCCeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHhcc
Confidence 44455678999999999998531 4567778889999999999999852 123333322
Q ss_pred ---------------------------------CCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcceeeEEeec
Q 018902 88 ---------------------------------LEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHVAYRRLDF 134 (349)
Q Consensus 88 ---------------------------------l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 134 (349)
.++|||+|+||||......+ ......+...+..++-......
T Consensus 149 g~~~~~~e~L~d~~~~~~~~~~~~vn~~dp~~~~gIpVf~I~GNHD~~~~~~~-----~s~~~LL~~~g~v~l~g~~~~~ 223 (472)
T 4fbk_A 149 GDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGR-----YSALDILQVTGLVNYFGRVPEN 223 (472)
T ss_dssp SSCCCCCEEEEEC-----CCCSCSSSTTCTTBCBSSCEEECCCCCCSCCC--C-----CCHHHHHHHTTSCEECCCCSCS
T ss_pred cCCcchheecchhhhhcccccccccccccccccCCCcEEEEecCCCCcccccc-----ccHHHHhccCCcEEEeCCcccC
Confidence 27899999999998644221 1133445444432110000000
Q ss_pred CC-----ceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHh--------C--CCCCCeEEEEeccCCCC
Q 018902 135 PT-----LKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVAL--------G--TPDDHLVILLAHNGPSG 199 (349)
Q Consensus 135 ~~-----~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--------~--~~~~~~~Ilv~H~PP~~ 199 (349)
+. +.+. .|+....+.|..+... +++.+.+. . ...+.++|+++|....+
T Consensus 224 d~i~~~pv~l~-kg~~~valyGl~y~~d----------------~rl~r~~~e~~v~~~~p~~~~~~~~nIlvlH~~~~~ 286 (472)
T 4fbk_A 224 DNIVVSPILLQ-KGFTKLALYGISNVRD----------------ERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSA 286 (472)
T ss_dssp SSEEECCEEEE-ETTEEEEEEECCCCCH----------------HHHHHHHHTTCEEEEEESTTGGGEEEEEEEESCSCC
T ss_pred CceeEEEEEEE-eCCceEEEEecCCCch----------------hhhhhhhhhhhhhhhCcccccCCceEEEEecCCccC
Confidence 11 1111 2344444433321110 11111110 0 01346799999986433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeeccccee
Q 018902 200 LGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRV 279 (349)
Q Consensus 200 ~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~ 279 (349)
.+. .++.+ ..++ ..++|+|++||+|.++... . .-..+++.++|||+....
T Consensus 287 ~~~-------~~yip--------------e~ll---~~g~DyValGH~H~~~~~~----~--~~~~~g~~ivyPGS~~~~ 336 (472)
T 4fbk_A 287 HTP-------TSYLP--------------ESFI---QDFYDFVLWGHEHECLIDG----S--YNPTQKFTVVQPGSTIAT 336 (472)
T ss_dssp SST-------TSSCC--------------GGGS---CTTCSEEEEESCCSCEEEE----E--EETTTTEEEEECCCSSCS
T ss_pred CCc-------cccCC--------------hhhh---hcCCCEEEecCcccceeee----c--ccCCCCeEEEECCCcccc
Confidence 211 01111 1122 3469999999999983210 0 001256889999996443
Q ss_pred eccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEEEEeeeecCCcceeEEEee
Q 018902 280 KRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIAERWIIVVGDTTTLQEEHI 343 (349)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~~~~~~~~~~~~~~~~~~ 343 (349)
...++ ....++|.+|+++++.++.+...+ .+.+++...++
T Consensus 337 s~~e~--------------------E~~~kg~~lveI~~~~v~ve~I~L----~t~Rpf~~~~i 376 (472)
T 4fbk_A 337 SLSPG--------------------ETAPKHCGILNITGKDFHLEKIRL----RTVRPFIMKDI 376 (472)
T ss_dssp SCCGG--------------------GCSCCEEEEEEEETTEEEEEEEEC----SSSCCEEEEEE
T ss_pred ccCcc--------------------CCCCCEEEEEEEECCEEEEEEEEC----CCcccEEEEEE
Confidence 32211 023689999999998876544332 13344555444
No 16
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=99.77 E-value=1.3e-17 Score=160.76 Aligned_cols=220 Identities=17% Similarity=0.218 Sum_probs=122.1
Q ss_pred CCccEEEEEeCCCCCcCh-------------HHHHHHhhCCCCCEEEEcCCCCCCc----------HHHHHHHH------
Q 018902 36 ASVVRIVIVGDVHDDWDL-------------QEDSKALQLLKPDLVLFTGDFGNEN----------VEIVQSVA------ 86 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~-------------~~~~~~i~~~~pD~vI~~GDl~~~~----------~~~l~~l~------ 86 (349)
.++|||+|+||+|++... +++++.+++.+||+||++||+++.. .+.++.+.
T Consensus 30 ~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~~~~~ 109 (431)
T 3t1i_A 30 ENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGDRPV 109 (431)
T ss_dssp GGEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBCSSCC
T ss_pred CCCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhccCCcc
Confidence 567999999999997531 4567777789999999999999852 12333332
Q ss_pred ---------------------------cCCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcc-eeeEEeecCCce
Q 018902 87 ---------------------------ELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEH-VAYRRLDFPTLK 138 (349)
Q Consensus 87 ---------------------------~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~ 138 (349)
+..+|+|+|.||||........ .....+...+... ++- .-+.+.+.
T Consensus 110 ~~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~g~~~l-----~~~~lL~~~glv~~fg~-~~~~e~i~ 183 (431)
T 3t1i_A 110 QFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGADAL-----CALDILSCAGFVNHFGR-SMSVEKID 183 (431)
T ss_dssp CCEECSCC------------------CCBCSCEEECCCSSSCCBTTTTB-----CHHHHHHHHTSEEECCC-CCCSSCEE
T ss_pred cceeccchhhccccccccccccccccccCCCcEEEEccCCCCccccccc-----CHHHHhccCCcEEEECC-cCccccee
Confidence 2368999999999986432111 1234555444321 110 00011111
Q ss_pred ---EEE-eCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhC-----C-----CCCCeEEEEeccCCCCCCCCC
Q 018902 139 ---LSI-VGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALG-----T-----PDDHLVILLAHNGPSGLGSEP 204 (349)
Q Consensus 139 ---i~~-~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~-----~~~~~~Ilv~H~PP~~~g~~~ 204 (349)
+.+ .|+....+.|..+... +++.+.+.. . .++.++|+++|..-...+.
T Consensus 184 ~~Pv~l~~g~~~valyGl~~~~~----------------~~l~~~~~~~~v~~~~p~~~~~~~~~Ilv~H~~~~~~g~-- 245 (431)
T 3t1i_A 184 ISPVLLQKGSTKIALYGLGSIPD----------------ERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGS-- 245 (431)
T ss_dssp ECCEEEEETTEEEEEEEECCCCH----------------HHHHHHHHTTCEEECCCSSCGGGEEEEEEECSCCSCSSS--
T ss_pred eEEEEEecCCEeEEEEeCCCCCH----------------HHHhhhhccccceeecccccCCCceEEEEECCCccCCCc--
Confidence 111 2444444444322111 111111111 0 1346899999985321110
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEc-CCceEEEeecccceeeccC
Q 018902 205 NDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVG-ADSTIYLNGAIVPRVKRLI 283 (349)
Q Consensus 205 ~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~-~~gt~yvn~g~~pr~~~~~ 283 (349)
.++.. ..++ ..++|+|++||+|.++.. . ..+ .+++.++|||+..+....+
T Consensus 246 -----~~~ip--------------~~l~---~~~~Dyv~lGH~H~~~~~----~---~~~~~~~~~i~yPGS~~~~s~~e 296 (431)
T 3t1i_A 246 -----TNFIP--------------EQFL---DDFIDLVIWGHEHECKIA----P---TKNEQQLFYISQPGSSVVTSLSP 296 (431)
T ss_dssp -----SSSCC--------------GGGS---CTTCCEEEECSCCSCEEE----E---EECTTTCCEEEECCCSSCCSCCH
T ss_pred -----cccCC--------------HhHh---hCCCCEEEeccccccccc----c---cccCCCCEEEEeCCCCcccCcCc
Confidence 01111 1122 346999999999998321 0 111 1468899999976644332
Q ss_pred CccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEEEEe
Q 018902 284 DEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIAERW 328 (349)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~~~ 328 (349)
.. ...++|.+|++++++++.+...+
T Consensus 297 ~E--------------------~~~k~~~lvei~~~~~~ve~i~l 321 (431)
T 3t1i_A 297 GE--------------------AVKKHVGLLRIKGRKMNMHKIPL 321 (431)
T ss_dssp HH--------------------HSCCEEEEEEEETTEEEEEEEEC
T ss_pred cc--------------------CCCCEEEEEEEECCEEEEEEEEC
Confidence 10 23579999999998776654333
No 17
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=99.77 E-value=3.2e-18 Score=146.26 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=101.1
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCCCccccccccchhHH
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDSWKTQEFSGKKKDGV 115 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~ 115 (349)
.+|||+++||+|++... +++++.++. ++|+|+++||+... .++.+. .|+++|+||||.... +
T Consensus 5 ~~m~i~~isD~H~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~---~l~~l~---~~~~~v~GNhD~~~~--~-------- 67 (176)
T 3ck2_A 5 AKQTIIVMSDSHGDSLIVEEVRDRYVG-KVDAVFHNGDSELR---PDSPLW---EGIRVVKGNMDFYAG--Y-------- 67 (176)
T ss_dssp CCEEEEEECCCTTCHHHHHHHHHHHTT-TSSEEEECSCCCSC---TTCGGG---TTEEECCCTTCCSTT--C--------
T ss_pred cCcEEEEEecCCCCHHHHHHHHHHhhc-CCCEEEECCCCchH---HHHhhh---CCeEEecCcccchhc--C--------
Confidence 35899999999986543 456666655 89999999998432 223332 389999999996421 0
Q ss_pred HHHHHHhCCcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEecc
Q 018902 116 QLQLECLGEEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHN 195 (349)
Q Consensus 116 ~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~ 195 (349)
+... . +.+ +..+|+++|+
T Consensus 68 -------------------p~~~-~------~~~------------------------------------~~~~i~~~Hg 85 (176)
T 3ck2_A 68 -------------------PERL-V------TEL------------------------------------GSTKIIQTHG 85 (176)
T ss_dssp -------------------CSEE-E------EEE------------------------------------TTEEEEEECS
T ss_pred -------------------CcEE-E------EEE------------------------------------CCeEEEEECC
Confidence 0000 0 110 1247999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecc
Q 018902 196 GPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAI 275 (349)
Q Consensus 196 PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~ 275 (349)
+|+... .+. +.+.++++ +.+++++++||+|.+. ..+. +++.++|+|+
T Consensus 86 ~~~~~~-----------------~~~----~~l~~~~~--~~~~d~vi~GHtH~~~-----~~~~-----~~~~~inpGs 132 (176)
T 3ck2_A 86 HLFDIN-----------------FNF----QKLDYWAQ--EEEAAICLYGHLHVPS-----AWLE-----GKILFLNPGS 132 (176)
T ss_dssp GGGTTT-----------------TCS----HHHHHHHH--HTTCSEEECCSSCCEE-----EEEE-----TTEEEEEECC
T ss_pred CccCCC-----------------CCH----HHHHHHHH--hcCCCEEEECCcCCCC-----cEEE-----CCEEEEECCC
Confidence 885431 123 33444444 3469999999999982 2233 6899999998
Q ss_pred cceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEEEEe
Q 018902 276 VPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIAERW 328 (349)
Q Consensus 276 ~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~~~ 328 (349)
+-..+ +. ....+|+++++++++++.+...+
T Consensus 133 ~~~~~-~~----------------------~~~~~y~il~~~~~~~~v~~~~~ 162 (176)
T 3ck2_A 133 ISQPR-GT----------------------IRECLYARVEIDDSYFKVDFLTR 162 (176)
T ss_dssp SSSCC-TT----------------------CCSCCEEEEEECSSEEEEEEECT
T ss_pred CCcCC-CC----------------------CCCCeEEEEEEcCCEEEEEEEEE
Confidence 63211 00 12268999999998876654443
No 18
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=99.77 E-value=3.2e-18 Score=163.79 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=49.0
Q ss_pred cEEEEEeCCCCCcC----h-------------HHHHHHhhCCCCCEEEEcCCCC-CCc----------HHHHHHHHcCCC
Q 018902 39 VRIVIVGDVHDDWD----L-------------QEDSKALQLLKPDLVLFTGDFG-NEN----------VEIVQSVAELEF 90 (349)
Q Consensus 39 mril~iSDlH~~~~----~-------------~~~~~~i~~~~pD~vI~~GDl~-~~~----------~~~l~~l~~l~~ 90 (349)
|||+|+||+|++.. . +++++.++..+||+||++||++ +.. .++++.|... +
T Consensus 1 mrilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~-~ 79 (379)
T 3tho_B 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT-A 79 (379)
T ss_dssp CEEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH-S
T ss_pred CeEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC-C
Confidence 89999999999875 1 4455666678999999999999 631 2355556555 8
Q ss_pred CEEEEcCCCCCC
Q 018902 91 PKAVILGNHDSW 102 (349)
Q Consensus 91 Pi~~V~GNHD~~ 102 (349)
|+++|+||||..
T Consensus 80 ~v~~i~GNHD~~ 91 (379)
T 3tho_B 80 PVVVLPGNQDWK 91 (379)
T ss_dssp CEEECCCTTSCT
T ss_pred CEEEEcCCCccc
Confidence 999999999954
No 19
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=99.76 E-value=2.5e-17 Score=159.91 Aligned_cols=205 Identities=12% Similarity=0.069 Sum_probs=120.2
Q ss_pred CCccEEEEEeCCCCCcChHHHHHHhhCC--CCCEEEEcCCCCCCc-------------HHHHHHHHcCCCCEEEEcCCCC
Q 018902 36 ASVVRIVIVGDVHDDWDLQEDSKALQLL--KPDLVLFTGDFGNEN-------------VEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~~~~~~~i~~~--~pD~vI~~GDl~~~~-------------~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
..++||+++||+|.+......++.+.+. +||+||++||++... .+.++.+.. .+|+++++||||
T Consensus 124 ~~~~~f~~~gD~~~~~~~~~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l~~-~~P~~~v~GNHD 202 (426)
T 1xzw_A 124 DVPYVFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVA-YQPWIWTAGNHE 202 (426)
T ss_dssp TCCEEEEEECSCTTBHHHHHHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHT-TSCEECCCCGGG
T ss_pred CCCeEEEEEEeCCCCCchHHHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHHHh-cCCEEEeccccc
Confidence 5679999999999875445566666654 999999999998531 223444443 789999999999
Q ss_pred CCcccccc-ccchhHHHHHHHHhCC----cceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHH
Q 018902 101 SWKTQEFS-GKKKDGVQLQLECLGE----EHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKR 175 (349)
Q Consensus 101 ~~~~~~~~-~~~~~~~~~~l~~~~~----~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
........ ......++..+..... ..-.+..++...+.+.++++... ++. ..++.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~ys~~~g~~~~i~Ldt~~~----------------~~~--~~~Q~~W 264 (426)
T 1xzw_A 203 IDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSG----------------FVK--YSPQYKW 264 (426)
T ss_dssp CCCBGGGTBCSTTHHHHHHSCCCCGGGTCSSTTSEEEEETTEEEEECCTTSC----------------CST--TSHHHHH
T ss_pred cccCCccccccCChhheEEEeCCcccCCCCCCCeEEEEECCEEEEEeeCccc----------------CCC--CHHHHHH
Confidence 87532110 0011122222211000 00012222334444544443210 111 2345678
Q ss_pred HHHHHhCCC--CCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCccc
Q 018902 176 IYKVALGTP--DDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAY 253 (349)
Q Consensus 176 l~~~l~~~~--~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~ 253 (349)
|.+.+++.+ ..+++||++|+|++..+.. .+. ....+++.+..+++ +++++++|+||+|..++.
T Consensus 265 L~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~-------~~~------~~~~~r~~l~~ll~--~~~VdlvlsGH~H~~~r~ 329 (426)
T 1xzw_A 265 FTSELEKVNRSETPWLIVLVHAPLYNSYEA-------HYM------EGEAMRAIFEPYFV--YYKVDIVFSGHVHSYERS 329 (426)
T ss_dssp HHHHHHHCCTTTCCEEEEECSSCSSCCBST-------TTT------TTHHHHHHHHHHHH--HTTCSEEEECSSSSEEEE
T ss_pred HHHHHHhhhhcCCCEEEEEeccCceeCCCc-------ccC------CCHHHHHHHHHHHH--HhCCCEEEEcChhhheee
Confidence 888887764 3456999999998654211 000 12456788888888 457999999999998543
Q ss_pred CC----------cceEEEEEcCCceEEEeecc
Q 018902 254 GN----------GLRKMIVVGADSTIYLNGAI 275 (349)
Q Consensus 254 ~~----------g~~~~~~~~~~gt~yvn~g~ 275 (349)
.. |... ...++++++||..|.
T Consensus 330 ~p~~~~~~~~~~g~~~-~~~~~~g~~yi~~G~ 360 (426)
T 1xzw_A 330 ERVSNVAYNIVNAKCT-PVSDESAPVYITIGD 360 (426)
T ss_dssp CSEECCCCCSTTCCCC-CEECTTSCEEEEECC
T ss_pred eeecCccccccCCccc-cccCCCccEEEEeCC
Confidence 20 1000 012356899998876
No 20
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=99.76 E-value=2.1e-17 Score=141.57 Aligned_cols=63 Identities=21% Similarity=0.177 Sum_probs=48.1
Q ss_pred CccEEEEEeCCCC--CcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 37 SVVRIVIVGDVHD--DWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 37 ~~mril~iSDlH~--~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
.+|||+++||+|+ +.. .++.++.+. .++|+||++||+++. +.++.|.++..|+++|+||||..
T Consensus 21 ~mmri~~iSD~Hg~~~~~~l~~~l~~~~-~~~D~ii~~GD~~~~--~~~~~l~~~~~~v~~V~GNhD~~ 86 (178)
T 2kkn_A 21 GVKRFLLISDSHVPVRMASLPDEILNSL-KEYDGVIGLGDYVDL--DTVILLEKFSKEFYGVHGNMDYP 86 (178)
T ss_dssp -CEEEEEECCCCBTTTTCCCCHHHHHGG-GGCSEEEESSCBSCH--HHHHHHHHHTSSEEECCCSSSCG
T ss_pred cceEEEEEecccCCCCHHHHHHHHHHHh-cCCCEEEECCCCCCH--HHHHHHHhcCCCEEEEECCCCcH
Confidence 4589999999995 222 245555554 789999999999983 66677766667999999999964
No 21
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.76 E-value=4.2e-18 Score=153.55 Aligned_cols=65 Identities=11% Similarity=0.194 Sum_probs=49.5
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhh---CC--CCCEEEEcCCCCCC---cHHHHHHHHcCC--CCEEEEcCCCCCC
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQ---LL--KPDLVLFTGDFGNE---NVEIVQSVAELE--FPKAVILGNHDSW 102 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~---~~--~pD~vI~~GDl~~~---~~~~l~~l~~l~--~Pi~~V~GNHD~~ 102 (349)
+|||+++||+|++... +++++.++ .. ++|+||++||+++. ..++++.|.++. .|+++|+||||..
T Consensus 1 mm~i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~~~~~v~GNhD~~ 76 (252)
T 1nnw_A 1 MVYVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQI 76 (252)
T ss_dssp -CEEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHSCEEEECCHHHHH
T ss_pred CcEEEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhcCeeEEecchHHH
Confidence 4899999999997653 55666666 55 89999999999974 245556665543 6899999999964
No 22
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=99.76 E-value=5.5e-17 Score=155.66 Aligned_cols=218 Identities=18% Similarity=0.165 Sum_probs=118.0
Q ss_pred CCccEEEEEeCCCCCcCh-------------HHHHHHhhCCCCCEEEEcCCCCCCc-------HHHHHHHHc--------
Q 018902 36 ASVVRIVIVGDVHDDWDL-------------QEDSKALQLLKPDLVLFTGDFGNEN-------VEIVQSVAE-------- 87 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~-------------~~~~~~i~~~~pD~vI~~GDl~~~~-------~~~l~~l~~-------- 87 (349)
.++|||+|+||+|++... +++++.+++.+||+||++|||++.. ..+++.|.+
T Consensus 11 ~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~p~~~~~~~~~~~lr~~~~g~~~~ 90 (417)
T 4fbw_A 11 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPC 90 (417)
T ss_dssp TTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBSSCCC
T ss_pred CCCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHhcccCCcc
Confidence 467999999999998531 4567777789999999999999852 123333222
Q ss_pred ----------------------------CCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcceeeEEeecC----
Q 018902 88 ----------------------------LEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHVAYRRLDFP---- 135 (349)
Q Consensus 88 ----------------------------l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~---- 135 (349)
.++|||+|.||||......+. .....+...+...+-......+
T Consensus 91 ~~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~I~GNHD~~~~~~~~-----s~~~lL~~~g~v~l~g~~~~~~~i~~ 165 (417)
T 4fbw_A 91 ELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRY-----SALDILQVTGLVNYFGRVPENDNIVV 165 (417)
T ss_dssp CCEECC------------CCGGGCTTBCBSSCEEECCCGGGC-----CC-----CHHHHHHHTTSCEECCCCC---CEEE
T ss_pred cceeccchhhhcccccccccccccccccCCCeEEEEecCCCCccccccc-----cHHHHhccCCeEEEeCCcccCCceeE
Confidence 378999999999986432210 1233444444321100000000
Q ss_pred -CceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHh--------C--CCCCCeEEEEeccCCCCCCCCC
Q 018902 136 -TLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVAL--------G--TPDDHLVILLAHNGPSGLGSEP 204 (349)
Q Consensus 136 -~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--------~--~~~~~~~Ilv~H~PP~~~g~~~ 204 (349)
.+.+. .|+....+.|..+... +++.+.+. . ...+.++|++.|....+.+.
T Consensus 166 ~pv~l~-~g~~~valyG~~~~~d----------------~rl~r~~~~~~v~~~~p~~~~~~~~nIlvlH~~~~~~~~-- 226 (417)
T 4fbw_A 166 SPILLQ-KGFTKLALYGISNVRD----------------ERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTP-- 226 (417)
T ss_dssp CCEEEE-ETTEEEEEEEECCCCH----------------HHHHHHHHTTCEEEEEESTTTTTSEEEEEEESCSSCSSS--
T ss_pred EeEEEE-ecCceEEEEeccCCch----------------hhhhhhhhhhhhhhcCcccccCCceEEEEecCCccCCCC--
Confidence 11111 2333343333321100 11111110 0 12457899999985432210
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeecccceeeccCC
Q 018902 205 NDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIVPRVKRLID 284 (349)
Q Consensus 205 ~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~pr~~~~~~ 284 (349)
.++.+ ..++ ..++|+|++||+|.++... . .-..+++.++|||+..+....++
T Consensus 227 -----~~yip--------------~~l~---~~~~DyvalGH~H~~~~~~----~--~~~~~g~~i~~PGS~~~~s~~e~ 278 (417)
T 4fbw_A 227 -----TSYLP--------------ESFI---QDFYDFVLWGHEHECLIDG----S--YNPTQKFTVVQPGSTIATSLSPG 278 (417)
T ss_dssp -----SSSCC--------------GGGS---CTTCSEEEEESCCSCEEEE----E--EETTTTEEEEECCCSSCSSCCHH
T ss_pred -----cccCc--------------hhHh---hcCCCEEEecCccccceec----c--ccCCCCEEEEECCCCCcCCCccc
Confidence 01111 1122 3579999999999983210 0 00125789999999654332210
Q ss_pred ccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEE
Q 018902 285 EQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIA 325 (349)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~ 325 (349)
. ...++|++|+++++++..+.
T Consensus 279 E--------------------~~~kg~~lvei~~~~~~~e~ 299 (417)
T 4fbw_A 279 E--------------------TAPKHCGILNITGKDFHLEK 299 (417)
T ss_dssp H--------------------HSCCEEEEEEEETTEEEEEE
T ss_pred c--------------------CCCCEEEEEEEECCEEEEEE
Confidence 0 13589999999998876544
No 23
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.73 E-value=5.5e-17 Score=148.12 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCCccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 35 SASVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 35 ~~~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
.+++.||+++||+|++... +++++.++..++|.||++||+++. ..++++.|.++. |+++|+||||..
T Consensus 8 ~~~~~~i~~iSDiHg~~~~l~~vl~~~~~~~~D~ii~~GDlv~~g~~~~~~~~~l~~~~-~~~~v~GNhD~~ 78 (270)
T 3qfm_A 8 HMDMTKIALLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQLP-ITARVLGNWEDS 78 (270)
T ss_dssp ---CEEEEEECCCTTCHHHHHHHHHHHHHTTCCEEEECSCCSSSSSCSHHHHHHHHTSC-EEEECCCHHHHH
T ss_pred cccccEEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHccC-CEEEEcCChHHH
Confidence 3567899999999998754 667778877899999999999974 467888888753 789999999964
No 24
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=99.73 E-value=1.2e-16 Score=150.19 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=50.4
Q ss_pred cEEEEEeCCCCCcCh--------------HHHHHHhhCCCCCEEEEcCCCCCCc----------HHHHHHHHcCCCCEEE
Q 018902 39 VRIVIVGDVHDDWDL--------------QEDSKALQLLKPDLVLFTGDFGNEN----------VEIVQSVAELEFPKAV 94 (349)
Q Consensus 39 mril~iSDlH~~~~~--------------~~~~~~i~~~~pD~vI~~GDl~~~~----------~~~l~~l~~l~~Pi~~ 94 (349)
|||+|+||+|++... +++++.+++.+||+||++||+++.. .+.++.|...++|+++
T Consensus 1 mkilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~ 80 (333)
T 1ii7_A 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFA 80 (333)
T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CEEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEE
Confidence 799999999998631 3456666778999999999999742 1245555555789999
Q ss_pred EcCCCCCCc
Q 018902 95 ILGNHDSWK 103 (349)
Q Consensus 95 V~GNHD~~~ 103 (349)
|+||||...
T Consensus 81 v~GNHD~~~ 89 (333)
T 1ii7_A 81 IEGNHDRTQ 89 (333)
T ss_dssp ECCTTTCCS
T ss_pred eCCcCCCcc
Confidence 999999863
No 25
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=99.72 E-value=8.7e-17 Score=156.01 Aligned_cols=204 Identities=14% Similarity=0.123 Sum_probs=118.2
Q ss_pred CCccEEEEEeCCCCCcChHHHHHHhhCC--CCCEEEEcCCCCCCc-------------HHHHHHHHcCCCCEEEEcCCCC
Q 018902 36 ASVVRIVIVGDVHDDWDLQEDSKALQLL--KPDLVLFTGDFGNEN-------------VEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~~~~~~~i~~~--~pD~vI~~GDl~~~~-------------~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
..+|||+++||+|.+......++.+.+. +||+||++||+++.. .++++.+.. .+|+++++||||
T Consensus 117 ~~~~~f~~igD~~~~~~~~~~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~~~-~~P~~~v~GNHD 195 (424)
T 2qfp_A 117 DVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVA-YQPWIWTAGNHE 195 (424)
T ss_dssp TCCEEEEEECSCTTBHHHHHHHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHT-TSCEEECCCHHH
T ss_pred CCCeEEEEEEeCCCCCChHHHHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHHHh-cCCeEeecCCcc
Confidence 4679999999999976544456666654 899999999999642 234444444 689999999999
Q ss_pred CCccccccccchhHHHHHHHHhCCc-------ceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHH
Q 018902 101 SWKTQEFSGKKKDGVQLQLECLGEE-------HVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESA 173 (349)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
.......... ..+......+... .-.+..++...+.+.+++... .++. ..++.
T Consensus 196 ~~~~~~~~~~--~~~~~~~~~f~~P~~~~~~~~~~~ys~~~g~~~~i~Ldt~~----------------~~~~--~~~Q~ 255 (424)
T 2qfp_A 196 IEFAPEINET--EPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYS----------------AYGR--GTPQY 255 (424)
T ss_dssp HCCBGGGTBC--STTHHHHHHCCCCGGGGTCSSTTSEEEEETTEEEEECCTTS----------------CCST--TSHHH
T ss_pred cccCCccccc--ccchhhhhhccCCccccCCCCCcEEEEEECCEEEEEecCCc----------------cCCC--cHHHH
Confidence 8643211100 0111122222110 001222233444444443321 0111 12457
Q ss_pred HHHHHHHhCCCC--CCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCc
Q 018902 174 KRIYKVALGTPD--DHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKEL 251 (349)
Q Consensus 174 ~~l~~~l~~~~~--~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~ 251 (349)
+||.+.+++.++ .+++|+++|+|++..+.. .|. ....+++.+..+++ +++++++|+||+|...
T Consensus 256 ~WL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~-------~~~------~~~~~r~~l~~ll~--~~~VdlvlsGH~H~y~ 320 (424)
T 2qfp_A 256 TWLKKELRKVKRSETPWLIVLMHSPLYNSYNH-------HFM------EGEAMRTKFEAWFV--KYKVDVVFAGHVHAYE 320 (424)
T ss_dssp HHHHHHHHHCCTTTCCEEEEECSSCSSCCBST-------TTT------TTHHHHHHHHHHHH--HTTCSEEEECSSSSEE
T ss_pred HHHHHHHhhhcccCCCEEEEEeCcCceecCcc-------ccc------ccHHHHHHHHHHHH--HhCCcEEEECChhhhh
Confidence 788888877643 457899999988654211 111 12456677888888 4579999999999964
Q ss_pred ccC--CcceEE-------EEEcCCceEEEeecc
Q 018902 252 AYG--NGLRKM-------IVVGADSTIYLNGAI 275 (349)
Q Consensus 252 ~~~--~g~~~~-------~~~~~~gt~yvn~g~ 275 (349)
+.. .+.... ...++++++||..|.
T Consensus 321 r~~~~~~~~~~~~~g~~~~~~~~~~~vyi~~G~ 353 (424)
T 2qfp_A 321 RSERVSNIAYKITNGLCTPVKDQSAPVYITIGD 353 (424)
T ss_dssp EECSEECCCCCSSSCCCSCEECTTSCEEEEECC
T ss_pred eeccccCcceeccCCccccccCCCCcEEEEecC
Confidence 321 110000 012346788888775
No 26
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.71 E-value=8.6e-18 Score=151.30 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=49.5
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
++|||+++||+|++... +++++.+. ++|.|+++||+++. ..++++.+.++.. +++|+||||..
T Consensus 2 ~~mri~~isDiHg~~~~l~~~l~~~~--~~d~ii~~GDl~~~g~~~~~~~~~l~~~~~-~~~v~GNhD~~ 68 (246)
T 3rqz_A 2 NAMRILIISDVHANLVALEAVLSDAG--RVDDIWSLGDIVGYGPRPRECVELVRVLAP-NISVIGNHDWA 68 (246)
T ss_dssp CCCCEEEECCCTTCHHHHHHHHHHHC--SCSEEEECSCCSSSSSCHHHHHHHHHHHCS-SEECCCHHHHH
T ss_pred CCcEEEEEeecCCCHHHHHHHHHhcc--CCCEEEECCCcCCCCCCHHHHHHHHHhcCC-CEEEeCchHHH
Confidence 56999999999987653 55666665 99999999999974 3567777766543 69999999964
No 27
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=99.69 E-value=3.7e-16 Score=137.12 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=53.1
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCC-----------cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNE-----------NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~-----------~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
+|||+++||+|++... +++++.++..++|+||++||+++. ..++++.|.++..|+++|+||||..
T Consensus 25 mmki~~iSD~H~~~~~l~~~l~~~~~~~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~ 101 (208)
T 1su1_A 25 MMKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSE 101 (208)
T ss_dssp CCEEEEECCCTTBHHHHHHHHHHHHHHTCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCCTTCCH
T ss_pred cEEEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEECCCccccCcccccccccCHHHHHHHHHhcCCceEEEECCCchH
Confidence 4899999999987643 556677766789999999999863 2567888888777999999999963
No 28
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=99.66 E-value=1.2e-15 Score=132.38 Aligned_cols=65 Identities=22% Similarity=0.171 Sum_probs=49.9
Q ss_pred ccEEEEEeCCCCCcCh--------------HHHHHHhhC--CCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCC
Q 018902 38 VVRIVIVGDVHDDWDL--------------QEDSKALQL--LKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 38 ~mril~iSDlH~~~~~--------------~~~~~~i~~--~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GN 98 (349)
.|||+++||+|++... +.+++.++. .++|+||++||+++. ..++++.|.+++.|+++|+||
T Consensus 1 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~~~~~~v~GN 80 (195)
T 1xm7_A 1 NAMMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALPGRKILVMGN 80 (195)
T ss_dssp CCCEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSCCTTSHHHHHHHSSSEEEEECCT
T ss_pred CcEEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHHHHCCCCEEEEeCC
Confidence 4899999999986542 234555555 489999999999874 335666777777789999999
Q ss_pred CCCC
Q 018902 99 HDSW 102 (349)
Q Consensus 99 HD~~ 102 (349)
||..
T Consensus 81 hD~~ 84 (195)
T 1xm7_A 81 HDKD 84 (195)
T ss_dssp TCCC
T ss_pred CCCc
Confidence 9974
No 29
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=99.45 E-value=6.8e-12 Score=124.55 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCccEEEEEeCCCCCcC-----------hHHHHHHhhCC----CC-CEEEEcCCCCCCc--------HHHHHHHHcCCCC
Q 018902 36 ASVVRIVIVGDVHDDWD-----------LQEDSKALQLL----KP-DLVLFTGDFGNEN--------VEIVQSVAELEFP 91 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~-----------~~~~~~~i~~~----~p-D~vI~~GDl~~~~--------~~~l~~l~~l~~P 91 (349)
...|||+++||+|.... ...+++.+++. ++ +++|.+||+++.. ...++.|+.++.
T Consensus 6 ~~~l~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln~lg~- 84 (516)
T 1hp1_A 6 TYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGY- 84 (516)
T ss_dssp CEEEEEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHHHHHTC-
T ss_pred ceEEEEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHHhccCC-
Confidence 35699999999999643 13455555533 35 7999999998742 345666777664
Q ss_pred EEEEcCCCCCC
Q 018902 92 KAVILGNHDSW 102 (349)
Q Consensus 92 i~~V~GNHD~~ 102 (349)
-++++||||+.
T Consensus 85 d~~~~GNHEfd 95 (516)
T 1hp1_A 85 DAMAIGNHEFD 95 (516)
T ss_dssp CEEECCGGGGS
T ss_pred CEEeecccccc
Confidence 47899999975
No 30
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=99.42 E-value=1.2e-12 Score=115.58 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=49.4
Q ss_pred CCccEEEEEeCCCCCcCh-HHHHHHhhC-CCCCEEEEcCCCCCCc---HHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 36 ASVVRIVIVGDVHDDWDL-QEDSKALQL-LKPDLVLFTGDFGNEN---VEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~-~~~~~~i~~-~~pD~vI~~GDl~~~~---~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
++.|||+++||+|++... +++++.+.. .++|.||++||++++. .++++.+.+ .++++|+||||..
T Consensus 10 ~~~~~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~--~~~~~v~GNhd~~ 79 (221)
T 1g5b_A 10 SKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF--PWFRAVRGNHEQM 79 (221)
T ss_dssp GGCSCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGS--TTEEECCCHHHHH
T ss_pred CCCceEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhc--CCEEEEccCcHHH
Confidence 345899999999987653 556666654 3789999999999864 455555543 5899999999954
No 31
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=99.30 E-value=2.4e-10 Score=114.36 Aligned_cols=192 Identities=18% Similarity=0.191 Sum_probs=101.1
Q ss_pred HHHHhhCC--C--CC-EEEEcCCCCCCc--------HHHHHHHHcCCCCEEEEcCCCCCCccccccccchhHHHHHHHHh
Q 018902 56 DSKALQLL--K--PD-LVLFTGDFGNEN--------VEIVQSVAELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECL 122 (349)
Q Consensus 56 ~~~~i~~~--~--pD-~vI~~GDl~~~~--------~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~ 122 (349)
+++.+++. + || ++|.+||+++.. ...++.++.++.+++ + ||||+... .+.+.+.+...
T Consensus 110 ~v~~~r~~~~~~gpd~Lll~~GD~~~gs~~~~~~~g~~~~~~ln~lg~d~~-~-GNHEfd~G-------~~~l~~~l~~~ 180 (562)
T 2wdc_A 110 LIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHM-V-SHWEWTLG-------RERVEELLGLF 180 (562)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCCSSSSHHHHHHTTHHHHHHHHHHTCCEE-C-CSGGGGGC-------HHHHHHHHHHC
T ss_pred HHHHHHhhhhcCCCCEEEEeCCCCCCcchhhhhhCCHHHHHHHHhhCCcEE-e-cchhcccC-------HHHHHHHHHhC
Confidence 45555544 4 88 899999999853 345677777788865 6 99996422 23355555543
Q ss_pred CCcce---------------eeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCC
Q 018902 123 GEEHV---------------AYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDH 187 (349)
Q Consensus 123 ~~~~~---------------~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 187 (349)
+-..+ .+..++..+.++.++|-. ...................+..+.+.+..+.+++. ..+
T Consensus 181 ~~p~L~aNv~~~~~~~~~~~py~i~e~~G~kIgiiG~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~d 256 (562)
T 2wdc_A 181 RGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGAS---YPYVKVSHPESFTEGLSFALDERRLQEAVDKARAE-GAN 256 (562)
T ss_dssp CSEECCSSCEETTTCCBSSCSEEEEEETTEEEEEEEEC---CTTHHHHSCGGGGTTEECCCCHHHHHHHHHHHHHT-TCS
T ss_pred CCCEEEEEEEecCCCCcccCCeEEEEECCeEEEEEeec---cCcccccccccccCCcEEeCHHHHHHHHHHHHHHC-CCC
Confidence 32111 122223334444444421 10000000000000011122223344444555432 346
Q ss_pred eEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCc
Q 018902 188 LVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADS 267 (349)
Q Consensus 188 ~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~g 267 (349)
..|+++|.|. +.. .+++++. .++|++++||+|....+. ... ++
T Consensus 257 ~iIvLsH~g~-------------------------~~d---~~la~~~-~giDlIlgGHtH~~~~~~---~~~-----~~ 299 (562)
T 2wdc_A 257 AVVLLSHNGM-------------------------QLD---AALAERI-RGIDLILSGHTHDLTPRP---WRV-----GK 299 (562)
T ss_dssp EEEEEECSCH-------------------------HHH---HHHHTTS-SSCCEEEECSSCCCCSSC---EEE-----TT
T ss_pred EEEEEeCCCC-------------------------cch---HHHHhcC-CCCcEEEeCCCCCCCccC---EEE-----CC
Confidence 7999999852 110 1233322 379999999999974211 122 57
Q ss_pred eEEEeecccceeeccCCccCCCCCcccccccccCCCCCCceeeEEEEEEeCCeEeEEEE
Q 018902 268 TIYLNGAIVPRVKRLIDEQGADSSSVSNKTSFLRPDSKGTVRAFTVVEILDGRIDKIAE 326 (349)
Q Consensus 268 t~yvn~g~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~ 326 (349)
++++.+|+. ++.-+..-+++++++++....
T Consensus 300 t~vvqag~~-----------------------------g~~lg~i~l~~~~g~v~~~~~ 329 (562)
T 2wdc_A 300 TWIVAGSAA-----------------------------GKALMRVDLKLWKGGIANLRV 329 (562)
T ss_dssp EEEEECCST-----------------------------TCEEEEEEEEEETTEEEEEEE
T ss_pred EEEEecCcc-----------------------------ccEEEEEEEEEeCCcEEEEee
Confidence 888888863 444566667778887754443
No 32
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=99.27 E-value=4.9e-10 Score=111.44 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=106.1
Q ss_pred CCccEEEEEeCCCCCcC-----------------hHHHHHHhhCCCCC-EEEEcCCCCCCc-------------HHHHHH
Q 018902 36 ASVVRIVIVGDVHDDWD-----------------LQEDSKALQLLKPD-LVLFTGDFGNEN-------------VEIVQS 84 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~-----------------~~~~~~~i~~~~pD-~vI~~GDl~~~~-------------~~~l~~ 84 (349)
...++|++++|+|+... ...+++.+++..++ ++|.+||+++.. ...++.
T Consensus 17 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~~~~ 96 (527)
T 3qfk_A 17 GSNIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDF 96 (527)
T ss_dssp -CEEEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSSHHHHHHHHTTCSSHHHHHH
T ss_pred CCcEEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCcHHHHHHhhcccCcchHHHH
Confidence 46799999999998642 14567777777777 677799998753 346667
Q ss_pred HHcCCCCEEEEcCCCCCCccccccccchhHHHHHHHHhCCcce--------------eeEEeecCCceEEEeCCeeeecC
Q 018902 85 VAELEFPKAVILGNHDSWKTQEFSGKKKDGVQLQLECLGEEHV--------------AYRRLDFPTLKLSIVGGRPFSCG 150 (349)
Q Consensus 85 l~~l~~Pi~~V~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~l~~~~~~i~~~g~~~~~~~ 150 (349)
|+.++.. ++++||||+.... +.+.+.+...+-..+ .+..++..+.++.++|... .
T Consensus 97 ln~lg~D-~~t~GNHefd~G~-------~~l~~~~~~~~~p~l~aNv~~~g~p~~~~py~i~e~~G~kIgviG~~~---~ 165 (527)
T 3qfk_A 97 YNRMAFD-FGTLGNHEFNYGL-------PYLKDTLRRLNYPVLCANIYENDSTLTDNGVKYFQVGDQTVGVIGLTT---Q 165 (527)
T ss_dssp HHHTCCC-EECCCGGGGTTCH-------HHHHHHHHHCSSCBCCSSEEETTEESSSCSEEEEEETTEEEEEEEEEC---T
T ss_pred HHhcCCc-EEeccccccccCH-------HHHHHHHHhCCCCEEEeEeeeCCCCccCCCEEEEEECCEEEEEEEecc---C
Confidence 7777655 5679999965321 234444444331111 1333344455555554321 1
Q ss_pred CchhhhhhhhhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 018902 151 GQQIFRKRLLSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISL 230 (349)
Q Consensus 151 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~ 230 (349)
....+............+..+.+.+..+.++ ...+..|+++|.+...... .+..... ..+.. ...+
T Consensus 166 ~~~~~~~~~~~~g~~~~d~~~~~~~~v~~l~--~~~D~iIvl~H~G~~~d~~-----~~~~~~~---~~~e~----~~~~ 231 (527)
T 3qfk_A 166 FIPHWEQPEHIQSLTFHSAFEILQQYLPEMK--RHADIIVVCYHGGFEKDLE-----SGTPTEV---LTGEN----EGYA 231 (527)
T ss_dssp TGGGTSCHHHHTTEEECCHHHHHHHHHHHHH--HHCSEEEEEEECCCSBCTT-----TCCBSSC---CSSSC----CHHH
T ss_pred CcccccCccccCCcEEcCHHHHHHHHHHHHH--hCCCEEEEEeCcCcccccc-----cCccccc---cccch----HHHH
Confidence 1000000000001112233344444555554 2245789999975311100 0000000 00110 0112
Q ss_pred HHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeeccc
Q 018902 231 LKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIV 276 (349)
Q Consensus 231 l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~ 276 (349)
++++...++|++++||+|.... ..+ ++++++++|+.
T Consensus 232 la~~~~~giDlIlgGHtH~~~~-----~~v-----~~~~ivqag~~ 267 (527)
T 3qfk_A 232 MLEAFSKDIDIFITGHQHRQIA-----ERF-----KQTAVIQPGTR 267 (527)
T ss_dssp HHHHHGGGCSEEECCSSCCEEE-----EEE-----TTEEEEEECST
T ss_pred HHHhcCCCCcEEEECCCCcccc-----eEE-----CCEEEeccChh
Confidence 2221112699999999999832 233 68999999873
No 33
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=99.23 E-value=1.2e-09 Score=109.31 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCccEEEEEeCCCCCcC------------------hHHHHHHhhCCCCC-EEEEcCCCCCCc--------HHHHHHHHcC
Q 018902 36 ASVVRIVIVGDVHDDWD------------------LQEDSKALQLLKPD-LVLFTGDFGNEN--------VEIVQSVAEL 88 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~------------------~~~~~~~i~~~~pD-~vI~~GDl~~~~--------~~~l~~l~~l 88 (349)
...+||+|+||+|.... ...+++.+++..|| +++.+||+++.. ...++.|+.+
T Consensus 27 ~~~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~l 106 (552)
T 2z1a_A 27 GFTLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHRL 106 (552)
T ss_dssp -CEEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHT
T ss_pred CeeEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHHHhc
Confidence 45699999999997521 24466777777788 889999998753 3466777776
Q ss_pred CCCEEEEcCCCCCCc
Q 018902 89 EFPKAVILGNHDSWK 103 (349)
Q Consensus 89 ~~Pi~~V~GNHD~~~ 103 (349)
+.. ++++||||+..
T Consensus 107 g~d-~~~lGNHEfd~ 120 (552)
T 2z1a_A 107 RYR-AMALGNHEFDL 120 (552)
T ss_dssp TCC-EEECCGGGGTT
T ss_pred CCC-ccccccccccC
Confidence 554 78899999753
No 34
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=99.13 E-value=5.8e-11 Score=107.62 Aligned_cols=62 Identities=27% Similarity=0.451 Sum_probs=47.7
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhCCCC-CEEEEcCCCCCCc---HHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQLLKP-DLVLFTGDFGNEN---VEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~~~p-D~vI~~GDl~~~~---~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
+||+++||+|++... +++++.+...++ |.+|++||++++. .++++.+.+ .++++|+||||..
T Consensus 19 ~~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~--~~~~~v~GNHd~~ 85 (262)
T 2qjc_A 19 GRVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKR--LGAYSVLGNHDAK 85 (262)
T ss_dssp SCEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHH--HTCEECCCHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHH--CCCEEEeCcChHH
Confidence 499999999987543 556666666555 9999999999853 456666654 3799999999953
No 35
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=99.13 E-value=4.1e-09 Score=104.28 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=48.6
Q ss_pred CCccEEEEEeCCCCCcC----------------h---HHHHHHhhCCCCCEEEE-cCCCCCCc--------HHHHHHHHc
Q 018902 36 ASVVRIVIVGDVHDDWD----------------L---QEDSKALQLLKPDLVLF-TGDFGNEN--------VEIVQSVAE 87 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~----------------~---~~~~~~i~~~~pD~vI~-~GDl~~~~--------~~~l~~l~~ 87 (349)
...++|++++|+|+... . ..+++.+++..+|.+++ +||+++.. ...++.|+.
T Consensus 4 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~~~~llldaGD~~~g~~~~~~~~g~~~~~~ln~ 83 (509)
T 3ive_A 4 AKDVTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGPYISSLTKGKAIIDIMNT 83 (509)
T ss_dssp CEEEEEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHTTTTHHHHHHHTT
T ss_pred ceEEEEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcCCCeEEEECCCCCCCchhhhhcCChHHHHHHHh
Confidence 35689999999997532 1 44567777778888777 99998753 456777777
Q ss_pred CCCCEEEEcCCCCCCc
Q 018902 88 LEFPKAVILGNHDSWK 103 (349)
Q Consensus 88 l~~Pi~~V~GNHD~~~ 103 (349)
++.. ++++||||+..
T Consensus 84 lg~D-~~tlGNHEfd~ 98 (509)
T 3ive_A 84 MPFD-AVTIGNHEFDH 98 (509)
T ss_dssp SCCS-EECCCGGGGTT
T ss_pred cCCc-EEeeccccccc
Confidence 6554 56789999653
No 36
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=99.11 E-value=6.6e-09 Score=104.35 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=47.0
Q ss_pred CccEEEEEeCCCCCcCh----------------------HHHHHHhhCCCCC-EEEEcCCCCCCc--------HHHHHHH
Q 018902 37 SVVRIVIVGDVHDDWDL----------------------QEDSKALQLLKPD-LVLFTGDFGNEN--------VEIVQSV 85 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~----------------------~~~~~~i~~~~pD-~vI~~GDl~~~~--------~~~l~~l 85 (349)
-.++|+|++|+|+.... ..+++.+++..++ ++|.+||+++.. ...++.|
T Consensus 11 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l 90 (579)
T 3ztv_A 11 VELSILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLYFTLFGGSADAAVM 90 (579)
T ss_dssp EEEEEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHHHHTTTTHHHHHHH
T ss_pred eEEEEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCceeeeecCCHHHHHHH
Confidence 45899999999975321 3456666666666 889999998753 4467777
Q ss_pred HcCCCCEEEEcCCCCCC
Q 018902 86 AELEFPKAVILGNHDSW 102 (349)
Q Consensus 86 ~~l~~Pi~~V~GNHD~~ 102 (349)
+.++.- ++++||||+.
T Consensus 91 n~lg~D-~~tlGNHEfd 106 (579)
T 3ztv_A 91 NAGNFH-YFTLGNHEFD 106 (579)
T ss_dssp HHHTCS-EEECCSGGGT
T ss_pred HhcCcC-eeeccccccc
Confidence 776654 5789999964
No 37
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=99.11 E-value=2e-09 Score=106.76 Aligned_cols=203 Identities=13% Similarity=0.142 Sum_probs=112.1
Q ss_pred CccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCC--c--------------------H-H------------H
Q 018902 37 SVVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNE--N--------------------V-E------------I 81 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~--~--------------------~-~------------~ 81 (349)
.++||+++||.+...........+.+.+||+||++||++-+ . . + .
T Consensus 115 ~~~rfa~~sc~~~~~g~~~~~~~ia~~~~D~vlhlGD~iY~d~~~~~~~~~~~~R~~~~~e~~tl~~yr~~y~~~~~dp~ 194 (527)
T 2yeq_A 115 PQMTFAFASCQQYEHGYYTAYKHMAKEKLDLVFHLGDYIYEYGPNEYVSKTGNVRTHNSAEIITLQDYRNRHAQYRSDAN 194 (527)
T ss_dssp CCEEEEEECCCCGGGCCCHHHHHHTTSCCSEEEECSCSSCCCCTTSSCCTTCCCSCCSSSSCCSHHHHHHHHHHHHTCHH
T ss_pred CCeEEEEEecCCCCCCccHHHHHHHhcCCCEEEecCCcccCCCCCcccccccccccCCcccccCHHHHHHHHHHHhCCHH
Confidence 67999999999874222235566666899999999998721 1 0 1 1
Q ss_pred HHHHHcCCCCEEEEcCCCCCCcccccc-cc---c--------hhHHHHHHHHhCC---------cceeeEEeecCC-ceE
Q 018902 82 VQSVAELEFPKAVILGNHDSWKTQEFS-GK---K--------KDGVQLQLECLGE---------EHVAYRRLDFPT-LKL 139 (349)
Q Consensus 82 l~~l~~l~~Pi~~V~GNHD~~~~~~~~-~~---~--------~~~~~~~l~~~~~---------~~~~~~~l~~~~-~~i 139 (349)
++.+.. .+|++++.||||+.....-. .. . ...++.+++.... ....|..+.... +.+
T Consensus 195 lq~~~a-~~P~i~~wDDHE~~nn~~~~~~~~~~~~~~f~~rr~~A~~ay~e~~P~~~~~~p~~~~~~~y~sf~~G~lv~~ 273 (527)
T 2yeq_A 195 LKAAHA-AFPWVVTWDDHEVENNYANKIPEKGQSVEAFVLRRAAAYQAYYEHMPLRISSLPNGPDMQLYRHFTYGNLASF 273 (527)
T ss_dssp HHHHHH-HSEEEECCCSTTTSTTCBTTBCSTTCCHHHHHHHHHHHHHHHHHHSCCCGGGCCBTTBCCCCEEEEETTTEEE
T ss_pred HHHHHh-cCCEEEecccccccCCCCCCcccccCCcccHHHHHHHHHHHHHHhCCCCcccCCCCCCceEEEEEEcCCcceE
Confidence 222222 58999999999997542110 00 0 0123333322111 111233444455 577
Q ss_pred EEeCCeeeecCCch-h----hhhhh---hhhccCCcchHHHHHHHHHHHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCC
Q 018902 140 SIVGGRPFSCGGQQ-I----FRKRL---LSVRYGVQDMDESAKRIYKVALGTPDDHLVILLAHNGPSGLGSEPNDICGKD 211 (349)
Q Consensus 140 ~~~g~~~~~~~g~~-~----~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d 211 (349)
.+++++.+...... . .+... .+...| .+|.+||.+.|.+. +.+++||++|.|.+...... +..
T Consensus 274 i~LDtR~yr~~~~~~~~~~~~~~~~~~~~~~~lG----~~Q~~WL~~~L~~s-~a~W~Iv~s~~p~~~~~~~~----g~~ 344 (527)
T 2yeq_A 274 NVLDTRQYRDDQANNDGNKPPSDESRNPNRTLLG----KEQEQWLFNNLGSS-TAHWNVLAQQIFFAKWNFGT----SAS 344 (527)
T ss_dssp EECCSSSSCCCCGGGSSEECCCHHHHCTTCCSSC----HHHHHHHHHHHHHC-CSSEEEEECSSCCSCCCSSC----SSS
T ss_pred EEEeccccccccccccccccccccccCCcccccC----HHHHHHHHHHHhcC-CCCeEEEEeCCcccccccCC----Ccc
Confidence 77776543211100 0 00000 001112 35677888887764 35789999999765542110 110
Q ss_pred CCCCCCCC-CCHHHHHHHHHHHHhcCCCc--cEEEeCccCCCc
Q 018902 212 WGFGGGDH-GDPDLAQAISLLKETTKLCI--PLVVFGHMHKEL 251 (349)
Q Consensus 212 ~~~~~~~~-G~~~~~~al~~l~~~~~~~~--~lvl~GH~H~~~ 251 (349)
.......| |.+..++.|..++++. ++ .++|+||+|...
T Consensus 345 ~~~~~D~W~g~~~~R~~Ll~~l~~~--~v~n~vvLsGDvH~~~ 385 (527)
T 2yeq_A 345 PIYSMDSWDGYPAQRERVINFIKSK--NLNNVVVLTGDVHASW 385 (527)
T ss_dssp CCEETTSGGGSHHHHHHHHHHHHHT--TCCCEEEEECSSSSEE
T ss_pred cccCccchhccHHHHHHHHHHHHHh--CCCCEEEEEcchHHHh
Confidence 00011234 6677778888888854 46 599999999984
No 38
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=99.00 E-value=7.9e-09 Score=103.10 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=48.6
Q ss_pred CCccEEEEEeCCCCCcC---------------------hHHHHHHhhCCCC-CEEEEcCCCCCCc--------HHHHHHH
Q 018902 36 ASVVRIVIVGDVHDDWD---------------------LQEDSKALQLLKP-DLVLFTGDFGNEN--------VEIVQSV 85 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~---------------------~~~~~~~i~~~~p-D~vI~~GDl~~~~--------~~~l~~l 85 (349)
...++|++++|+|.... ...+++.+++..+ +++|.+||+++.. ...++.|
T Consensus 23 ~~~l~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l 102 (546)
T 4h2g_A 23 PWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFM 102 (546)
T ss_dssp CEEEEEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHHH
T ss_pred ceEEEEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHHH
Confidence 45699999999997432 1345666666566 5999999999853 3467777
Q ss_pred HcCCCCEEEEcCCCCCCc
Q 018902 86 AELEFPKAVILGNHDSWK 103 (349)
Q Consensus 86 ~~l~~Pi~~V~GNHD~~~ 103 (349)
+.++.. ++++||||+..
T Consensus 103 n~lg~d-~~~~GNHEfd~ 119 (546)
T 4h2g_A 103 NALRYD-AMALGNHEFDN 119 (546)
T ss_dssp HHHTCS-EEECCGGGGTT
T ss_pred HhcCCc-EEeccCccccc
Confidence 776655 67899999743
No 39
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=98.90 E-value=1.8e-07 Score=87.68 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=45.4
Q ss_pred CccEEEEEeCCCCCcCh-----------------HHHHHHhhCCCCC-EEEEcCCCCCCcH-------------------
Q 018902 37 SVVRIVIVGDVHDDWDL-----------------QEDSKALQLLKPD-LVLFTGDFGNENV------------------- 79 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-----------------~~~~~~i~~~~pD-~vI~~GDl~~~~~------------------- 79 (349)
-.++|++++|+|+.... ..+++.+++..++ ++|.+||+++...
T Consensus 10 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs~~~~~~~~~~~~~g~~~g~~ 89 (341)
T 3gve_A 10 VHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKT 89 (341)
T ss_dssp EEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSHHHHHHHHHHHHHHHHTSSC
T ss_pred eEEEEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCcHHHHHhhhcccccccccccc
Confidence 45899999999986421 3456666655565 6678999987531
Q ss_pred -HHHHHHHcCCCCEEEEcCCCCCCc
Q 018902 80 -EIVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 80 -~~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
..++.++.++.- ++++||||+..
T Consensus 90 ~~~~~~ln~lg~D-a~tlGNHEfd~ 113 (341)
T 3gve_A 90 HPIISVMNALKYD-AGTLGNHEFNY 113 (341)
T ss_dssp CHHHHHHHHTTCC-BEECCGGGGTT
T ss_pred cHHHHHHHhhCCC-eeeccchhhcc
Confidence 245566666654 46789999764
No 40
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.85 E-value=1.1e-08 Score=100.34 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=47.7
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCC-CCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCC
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLK-PDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSW 102 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~-pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~ 102 (349)
..||++++||+|++... .++++.+.... .|.+|++||++|+. .+++..|..+ +..+++|.||||..
T Consensus 211 ~~~~~~vigDiHG~~~~l~~~l~~~~~~~~~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~ 285 (477)
T 1wao_1 211 ETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETD 285 (477)
T ss_dssp SSCEEEEECBCTTCHHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSH
T ss_pred CCcceEEEeCCCCCHHHHHHHHHHcCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHH
Confidence 46899999999998653 45555554333 35699999999964 4555544332 66799999999964
No 41
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=5.5e-07 Score=84.27 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=46.4
Q ss_pred CccEEEEEeCCCCCcCh-----------------HHHHHHhhCCCCC-EEEEcCCCCCCcH----------------HHH
Q 018902 37 SVVRIVIVGDVHDDWDL-----------------QEDSKALQLLKPD-LVLFTGDFGNENV----------------EIV 82 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-----------------~~~~~~i~~~~pD-~vI~~GDl~~~~~----------------~~l 82 (349)
-.++|++++|+|+.... ..+++.+++..++ ++|.+||+++... ..+
T Consensus 7 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~n~llld~GD~~qGs~~~~~~~~~~~~~g~~~p~~ 86 (339)
T 3jyf_A 7 VDLRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQGSPLGDYMAAKGLKEGDVHPVY 86 (339)
T ss_dssp EEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCSCEEEEECSCCSSSSHHHHHHHHHCCCTTCCCHHH
T ss_pred eeEEEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhCCCEEEEECCCCCCCchhHHhhhhcccccccchHHH
Confidence 45899999999985421 3466777766666 7789999987531 345
Q ss_pred HHHHcCCCCEEEEcCCCCCCc
Q 018902 83 QSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 83 ~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
+.++.++.- ++++||||+..
T Consensus 87 ~~mn~lg~D-~~t~GNHEfd~ 106 (339)
T 3jyf_A 87 KAMNTLNYA-VGNLGNHEFNY 106 (339)
T ss_dssp HHHTTSCCS-EEECCGGGGTT
T ss_pred HHHHhcCCC-EEecchhhhhc
Confidence 666666654 55789999753
No 42
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=98.78 E-value=2.3e-07 Score=92.52 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=45.8
Q ss_pred CCccEEEEEeCCCCCcC--------------hHHHHHHhh----CCCCC-EEEEcCCCCCCc----------HHHHHHHH
Q 018902 36 ASVVRIVIVGDVHDDWD--------------LQEDSKALQ----LLKPD-LVLFTGDFGNEN----------VEIVQSVA 86 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~--------------~~~~~~~i~----~~~pD-~vI~~GDl~~~~----------~~~l~~l~ 86 (349)
...++|++++|+|+... ..++...++ +..+| ++|.+||+++.. ...++.|+
T Consensus 13 ~~~l~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~~~LlldaGD~~~Gs~~~~~~~~~g~~~~~~ln 92 (557)
T 3c9f_A 13 WNDINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGLSDITSPNGLKSTPIFI 92 (557)
T ss_dssp CCSEEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSSCHHHHSSSSTTTTTHHHHT
T ss_pred ceEEEEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCCCEEEEecCCCCCCccchhhcccCCHHHHHHHH
Confidence 35699999999999632 123333333 35788 579999998752 23566777
Q ss_pred cCCCCEEEEcCCCCCCc
Q 018902 87 ELEFPKAVILGNHDSWK 103 (349)
Q Consensus 87 ~l~~Pi~~V~GNHD~~~ 103 (349)
.++.- ++++||||+..
T Consensus 93 ~lg~D-a~tlGNHEfD~ 108 (557)
T 3c9f_A 93 KQDYD-LLTIGNHELYL 108 (557)
T ss_dssp TSCCS-EECCCGGGSSS
T ss_pred hcCCC-EEeecchhccc
Confidence 76655 56789999864
No 43
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=98.69 E-value=9e-08 Score=88.32 Aligned_cols=69 Identities=25% Similarity=0.316 Sum_probs=50.7
Q ss_pred CCccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCcc
Q 018902 36 ASVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWKT 104 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~~ 104 (349)
.-.++++++||+|++... .++++.+.....|.+|++||++|+. .+.++.|..+ +..++++.||||....
T Consensus 47 ~~~~~i~viGDIHG~~~~L~~ll~~~~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l 123 (309)
T 2ie4_C 47 EVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQI 123 (309)
T ss_dssp EECSSEEEECCCTTCHHHHHHHHHHHCCTTTSCEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTG
T ss_pred eccCCEEEEecCCCCHHHHHHHHHHcCCCCCCEEEEeCCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHH
Confidence 344789999999998754 5566666556678899999999963 4455544433 4569999999998654
No 44
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=98.64 E-value=1.2e-08 Score=93.15 Aligned_cols=64 Identities=25% Similarity=0.411 Sum_probs=50.4
Q ss_pred cEEEEEeCCCCCcCh-HHHHHHhhC-CCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDL-QEDSKALQL-LKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~-~~~~~~i~~-~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
||++++||+|++... .++++.+.. .++|.+|++||++|+ ..++++.+.+++.++++|.||||..
T Consensus 1 M~i~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l~~~~~~v~GNHe~~ 69 (280)
T 2dfj_A 1 MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLH 69 (280)
T ss_dssp -CEEEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHTGGGEEECCCHHHHH
T ss_pred CeEEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhCCCceEEEECCCcHH
Confidence 789999999998653 556666654 478999999999985 3567777777666899999999964
No 45
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=98.63 E-value=1.1e-06 Score=79.63 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=45.8
Q ss_pred CccEEEEEeCCCCCcCh---HHHHHHhhCC-CCCEEEEcCCCCC-C---cHHHHHHHHcCCCCEEEEcCCCCCCcc
Q 018902 37 SVVRIVIVGDVHDDWDL---QEDSKALQLL-KPDLVLFTGDFGN-E---NVEIVQSVAELEFPKAVILGNHDSWKT 104 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~---~~~~~~i~~~-~pD~vI~~GDl~~-~---~~~~l~~l~~l~~Pi~~V~GNHD~~~~ 104 (349)
..|||+++||+|+..-. ...++.+++. ++|++|.-||-.. . .....+.|..++.- .+..|||++...
T Consensus 3 ~~m~ilf~GDv~G~~G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~~~~~~~ln~~G~D-a~TlGNHefD~g 77 (281)
T 1t71_A 3 NSIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVN-YITMGNHTWFQK 77 (281)
T ss_dssp CCCEEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTCC-EEECCTTTTCCG
T ss_pred ceEEEEEECCcCChHHHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcCHHHHHHHHhcCCC-EEEEccCcccCC
Confidence 45999999999975322 2234555433 6899999888653 2 35677777776665 455699998654
No 46
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=98.54 E-value=1e-05 Score=72.34 Aligned_cols=226 Identities=15% Similarity=0.101 Sum_probs=115.6
Q ss_pred cEEEEEeCCCCCcCh---HHHHHHhhCCCCCEEEEcCCCC-CC---cHHHHHHHHcCCCCEEEEcCCCCCCccccccccc
Q 018902 39 VRIVIVGDVHDDWDL---QEDSKALQLLKPDLVLFTGDFG-NE---NVEIVQSVAELEFPKAVILGNHDSWKTQEFSGKK 111 (349)
Q Consensus 39 mril~iSDlH~~~~~---~~~~~~i~~~~pD~vI~~GDl~-~~---~~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~ 111 (349)
|||++++|+=+..-. ...++.+++.. |++|.-|+-. .. .....+.|..++.-++ ..|||++...
T Consensus 1 m~ilf~GDv~g~~G~~~~~~~l~~lr~~~-d~vi~nge~~~~G~g~~~~~~~~l~~~G~Da~-TlGNHefD~~------- 71 (255)
T 1t70_A 1 MRVLFIGDVFGQPGRRVLQNHLPTIRPQF-DFVIVNMENSAGGFGMHRDAARGALEAGAGCL-TLGNHAWHHK------- 71 (255)
T ss_dssp CEEEEECCBBHHHHHHHHHHHHHHHGGGC-SEEEEECTBTTTTSSCCHHHHHHHHHHTCSEE-ECCTTTTSST-------
T ss_pred CEEEEEeccCChHHHHHHHHHHHHHHhhC-CEEEECCCCccCCcCCCHHHHHHHHhCCCCEE-EeccccccCc-------
Confidence 799999999643222 44566666555 9888777754 32 3567777877776644 5599998632
Q ss_pred hhHHHHHHHHhC-------------CcceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHH
Q 018902 112 KDGVQLQLECLG-------------EEHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYK 178 (349)
Q Consensus 112 ~~~~~~~l~~~~-------------~~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (349)
.+...++... ....++..++..+.++.++|-.. .. + + ...++..+.++++.
T Consensus 72 --~l~~~l~~~~~~~~~~aN~~~~~~pg~g~~I~~~~G~kIgVigl~g-----~~-~----~---~~~~~p~~~~~~~v- 135 (255)
T 1t70_A 72 --DIYPMLSEDTYPIVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLG-----RV-F----M---EAVDNPFRTMDALL- 135 (255)
T ss_dssp --THHHHHHTTCSCEECCSCCCCTTCSSCSEEEEECSSSEEEEEEEEC-----CT-T----S---CCCSCHHHHHHHHT-
T ss_pred --hHHHHHhhCCCcEEEEeccCCCCCCCCCeEEEEECCEEEEEEEeec-----Cc-C----c---ccccCHHHHHHHHH-
Confidence 1223332221 00113344455555555554321 10 0 0 01222222233333
Q ss_pred HHhCCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcce
Q 018902 179 VALGTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLR 258 (349)
Q Consensus 179 ~l~~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~ 258 (349)
+++ ..+..|+.+|... ..+- +++...+ .-++|+|+.||+|.... ..
T Consensus 136 --~~l-~~d~IIv~~H~e~-----------------------t~Ek-~~la~~~---dg~vd~VvGgHTHv~~~----d~ 181 (255)
T 1t70_A 136 --ERD-DLGTVFVDFHAEA-----------------------TSEK-EAMGWHL---AGRVAAVIGTHTHVPTA----DT 181 (255)
T ss_dssp --TCS-SCCEEEEEEECSC-----------------------HHHH-HHHHHHH---TTSSSEEEEESSCSCBS----CC
T ss_pred --HHh-CCCEEEEEeCCCC-----------------------hHHH-HHHHHhC---CCCeEEEEeCCCCcCCC----ce
Confidence 333 4467899999632 0121 2334333 22599999999999842 22
Q ss_pred EEEEEcCCceEEEe----ecccceeeccCCccCCCCCccccc-ccccCCCCCCceeeEEEEEEeCCeEeEEEEEe
Q 018902 259 KMIVVGADSTIYLN----GAIVPRVKRLIDEQGADSSSVSNK-TSFLRPDSKGTVRAFTVVEILDGRIDKIAERW 328 (349)
Q Consensus 259 ~~~~~~~~gt~yvn----~g~~pr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~~~ 328 (349)
++ -++||.|++ +|+.+.+--.....-+..+ +++. .||.+. .+...-+-++|+++.|+.+.+++.-
T Consensus 182 ~i---l~~gt~~i~d~G~~G~y~sviG~~~~~~~~k~-l~~~~~~f~~~-~~~~~~~g~~~~~d~g~~~~i~~i~ 251 (255)
T 1t70_A 182 RI---LKGGTAYQTDAGFTGPHDSIIGSAIEGPLQRF-LTERPHRYGVA-EGRAELNGVALHFEGGKATAAERYR 251 (255)
T ss_dssp EE---ETTTEEEESCCCCBEESSSBTTBCSHHHHHHH-HHCSCCCCCBC-CSCEEEEEEEEEEETTEEEEEEEEE
T ss_pred EE---cCCCeEEEEcCcccccCcceecCcchHHHHHH-HhCCCcceecC-CCceEEEEEEEEecCCcEEEEEEEe
Confidence 22 126788876 3443322110000000001 1111 344333 2333347788899988877666553
No 47
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=98.50 E-value=3.4e-06 Score=83.73 Aligned_cols=65 Identities=26% Similarity=0.409 Sum_probs=45.1
Q ss_pred ccEEEEEeCCCCCcC---------------------hHHHHHHhhCCCCC-EEEEcCCCCCCc--------HHHHHHHHc
Q 018902 38 VVRIVIVGDVHDDWD---------------------LQEDSKALQLLKPD-LVLFTGDFGNEN--------VEIVQSVAE 87 (349)
Q Consensus 38 ~mril~iSDlH~~~~---------------------~~~~~~~i~~~~pD-~vI~~GDl~~~~--------~~~l~~l~~ 87 (349)
.++|+|++|+|+... ....++.+++..++ ++|.+||+++.. ...++.++.
T Consensus 3 ~LtILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~arlat~i~~~r~~~~n~llldaGD~~qGs~~~~~~~g~~~i~~mN~ 82 (530)
T 4h1s_A 3 ELTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNA 82 (530)
T ss_dssp EEEEEEECCCTTCCSCBCTTSSBCCSTTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSHHHHHHTTHHHHHHHHH
T ss_pred EEEEEEEcccccCCcccCcccccccccccccCcHHHHHHHHHHHHhhCcCeEEEEeCCcccchHHHHHhCChHHHHHHhc
Confidence 378999999997431 12345666655666 677899999753 346666776
Q ss_pred CCCCEEEEcCCCCCCc
Q 018902 88 LEFPKAVILGNHDSWK 103 (349)
Q Consensus 88 l~~Pi~~V~GNHD~~~ 103 (349)
++.- ++++||||+..
T Consensus 83 lgyD-a~~lGNHEFd~ 97 (530)
T 4h1s_A 83 LRYD-AMALGNHEFDN 97 (530)
T ss_dssp TTCC-EEECCGGGGTT
T ss_pred cCCC-EEEEchhhhcc
Confidence 6543 68999999754
No 48
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=98.47 E-value=1.9e-05 Score=70.39 Aligned_cols=226 Identities=17% Similarity=0.107 Sum_probs=116.5
Q ss_pred cEEEEEeCCCCCc--Ch-HHHHHHhhCCCCCEEEEcC-CCCCC---cHHHHHHHHcCCCCEEEEcCCCCCCccccccccc
Q 018902 39 VRIVIVGDVHDDW--DL-QEDSKALQLLKPDLVLFTG-DFGNE---NVEIVQSVAELEFPKAVILGNHDSWKTQEFSGKK 111 (349)
Q Consensus 39 mril~iSDlH~~~--~~-~~~~~~i~~~~pD~vI~~G-Dl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~~~~~~~~~~ 111 (349)
|||++++|+=+.. .. ...++.+++.. |++|+-| |.+.. .....+.|.+++.-++ ..|||++....
T Consensus 1 m~ilfiGDi~g~~G~~~v~~~l~~lr~~~-d~vi~ngen~~~G~g~~~~~~~~l~~~G~D~~-T~GNHefD~~~------ 72 (252)
T 2z06_A 1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRY-DLVIANGENAARGKGLDRRSYRLLREAGVDLV-SLGNHAWDHKE------ 72 (252)
T ss_dssp CEEEEECCBCHHHHHHHHHHHHHHHGGGC-SEEEEECTTTTTTSSCCHHHHHHHHHHTCCEE-ECCTTTTSCTT------
T ss_pred CEEEEEEecCCcccHHHHHHHHHHHHhhC-CEEEEeCCCccCCCCcCHHHHHHHHhCCCCEE-EeccEeeECch------
Confidence 7999999995533 22 55667776666 8766554 55443 3677777887777765 77999986421
Q ss_pred hhHHHHHHHHhC---C-------cceeeEEeecCCceEEEeCCeeeecCCchhhhhhhhhhccCCcchHHHHHHHHHHHh
Q 018902 112 KDGVQLQLECLG---E-------EHVAYRRLDFPTLKLSIVGGRPFSCGGQQIFRKRLLSVRYGVQDMDESAKRIYKVAL 181 (349)
Q Consensus 112 ~~~~~~~l~~~~---~-------~~~~~~~l~~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 181 (349)
+...++... . ....+..++..+.++.++|.. |.. + + ...++..+.++++.+.++
T Consensus 73 ---l~~~l~~~~~vrpaN~~~~~pg~~~~i~~~~G~kIgVi~l~-----g~~-~----~---~~~~~pf~~~~~~v~~lk 136 (252)
T 2z06_A 73 ---VYALLESEPVVRPLNYPPGTPGKGFWRLEVGGESLLFVQVM-----GRI-F----M---DPLDDPFRALDRLLEEEK 136 (252)
T ss_dssp ---HHHHHHHSSEECCTTSCSSCSSCSEEEEEETTEEEEEEEEE-----CCT-T----S---CCCCCHHHHHHHHHHHCC
T ss_pred ---HHHHhccCCceEeecCCCCCCCCCeEEEEECCEEEEEEEcc-----ccc-C----c---cccCCHHHHHHHHHHHhC
Confidence 222332210 0 011333344444554444321 110 0 0 012333333455555544
Q ss_pred CCCCCCeEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEE
Q 018902 182 GTPDDHLVILLAHNGPSGLGSEPNDICGKDWGFGGGDHGDPDLAQAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMI 261 (349)
Q Consensus 182 ~~~~~~~~Ilv~H~PP~~~g~~~~~~~~~d~~~~~~~~G~~~~~~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~ 261 (349)
.+..|+++|... ..+ .+++...+. -++|+|+-||+|..... .++
T Consensus 137 ----~d~IIv~~H~g~-----------------------tse-k~~la~~~d---g~Vd~VvGgHTHv~t~d----~~i- 180 (252)
T 2z06_A 137 ----ADYVLVEVHAEA-----------------------TSE-KMALAHYLD---GRASAVLGTHTHVPTLD----ATR- 180 (252)
T ss_dssp ----CSEEEEEEECSC-----------------------HHH-HHHHHHHHB---TTBSEEEEESSCSCBSC----CEE-
T ss_pred ----CCEEEEEeCCCc-----------------------HHH-HHHHHHhCC---CCeEEEEcCCCCcCCCc----cEE-
Confidence 457899999731 011 123444332 25999999999998432 222
Q ss_pred EEcCCceEEEe----ecccceeeccCCccCCCCCcccc-cccccCCCCCCceeeEEEEEEeCCeEeEEEEEe
Q 018902 262 VVGADSTIYLN----GAIVPRVKRLIDEQGADSSSVSN-KTSFLRPDSKGTVRAFTVVEILDGRIDKIAERW 328 (349)
Q Consensus 262 ~~~~~gt~yvn----~g~~pr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~v~i~~~~v~~~~~~~ 328 (349)
-++||.|+. +|+.+.+--.....-+..+ +++ ..||.+. .+...-.-++|+++.|+.+.+++.-
T Consensus 181 --l~~gt~~itd~G~~G~y~sviG~~~~~~~~k~-l~~l~~~f~~~-~~~~~~~g~~~~~d~g~~~~i~~i~ 248 (252)
T 2z06_A 181 --LPKGTLYQTDVGMTGTYHSIIGGEVETFLARF-LTGRPQPFRAA-QGKARFHATELVFEGGRPVAISPYV 248 (252)
T ss_dssp --CTTSCEEESCCCCBEESSSBTTBCHHHHHHHH-HHCSCCCCCBC-CSCEEEEEEEEEEETTEEEEEEEEE
T ss_pred --cCCCcEeecCCcccccCceEEcCCCcchHHHh-hcCCceeEECC-CCceEEEEEEEEecCCcEEEEEEEE
Confidence 226778876 3443322110000000001 111 1344333 2333347788899988877666553
No 49
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=98.26 E-value=5.8e-07 Score=84.32 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=50.2
Q ss_pred CCCCCCccEEEEEeCCCCCcCh-HHHHHHhhC--------CCCCEEEEcCCCCCCc---HHHHHHHHc-------CCCCE
Q 018902 32 PAMSASVVRIVIVGDVHDDWDL-QEDSKALQL--------LKPDLVLFTGDFGNEN---VEIVQSVAE-------LEFPK 92 (349)
Q Consensus 32 ~~~~~~~mril~iSDlH~~~~~-~~~~~~i~~--------~~pD~vI~~GDl~~~~---~~~l~~l~~-------l~~Pi 92 (349)
+......||++++||+|++... .++++.+.. .++|.+|++||++|+. .++++.|.. .+.++
T Consensus 64 ~~~~~~~~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~~~~~~~~v 143 (342)
T 2z72_A 64 PDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMV 143 (342)
T ss_dssp CSEECCCCEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cceecCCCCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHHHhhCCCeE
Confidence 4445567899999999998653 444554432 1579999999999853 344444433 34569
Q ss_pred EEEcCCCCCCc
Q 018902 93 AVILGNHDSWK 103 (349)
Q Consensus 93 ~~V~GNHD~~~ 103 (349)
++|.||||...
T Consensus 144 ~~v~GNHE~~~ 154 (342)
T 2z72_A 144 HLLMGNHEQMV 154 (342)
T ss_dssp EECCCHHHHHH
T ss_pred EEEecCCcHHH
Confidence 99999999743
No 50
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=98.23 E-value=1e-06 Score=81.90 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=49.6
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
-.+++.++||+|++... .++++.+.....|.+|++||++|+. .+.++.|..+ +..+++|.||||...
T Consensus 55 ~~~~i~viGDIHG~~~~L~~ll~~~g~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~ 129 (330)
T 1fjm_A 55 LEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS 129 (330)
T ss_dssp ECSSEEEECBCTTCHHHHHHHHHHHCSTTSSCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHH
T ss_pred ecCceEEecCCCCCHHHHHHHHHHhCCCCcceEEeCCCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHhh
Confidence 34689999999999754 5566666555678899999999963 4555544432 456999999999754
No 51
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=98.19 E-value=2.2e-06 Score=79.03 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=47.3
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCCC-CEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLKP-DLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~p-D~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
..+|++++||+|++... .++++.+..... +.+|++||++|+. .+.+..|..+ +..++.+.||||...
T Consensus 58 ~~~ri~viGDIHG~~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~ 133 (315)
T 3h63_A 58 ETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDN 133 (315)
T ss_dssp TTCEEEEECCCTTCHHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHH
T ss_pred CCceEEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCccccc
Confidence 46899999999999753 455555443333 4699999999963 4555444432 456999999999754
No 52
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=98.09 E-value=4.2e-06 Score=77.73 Aligned_cols=67 Identities=25% Similarity=0.300 Sum_probs=47.9
Q ss_pred CccEEEEEeCCCCCcCh-HHHHHHhhCCCC-CEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 37 SVVRIVIVGDVHDDWDL-QEDSKALQLLKP-DLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~-~~~~~~i~~~~p-D~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
+.||++++||+|++... .++++.+..... +.+|++||++|+. .+.+..|..+ +..++.+.||||...
T Consensus 62 ~~~ri~viGDIHG~~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~ 137 (335)
T 3icf_A 62 PDVKISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDN 137 (335)
T ss_dssp TTCEEEEECCCTTCHHHHHHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHH
T ss_pred cCceEEEEecCCCCHHHHHHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhh
Confidence 56899999999999764 556665544433 4699999999963 4444444332 456999999999643
No 53
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=98.05 E-value=3.1e-06 Score=77.45 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=48.4
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHc----CCCCEEEEcCCCCCCc
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAE----LEFPKAVILGNHDSWK 103 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~----l~~Pi~~V~GNHD~~~ 103 (349)
.++++++||+|++... .++++.+.....|.+|+.||++|+. .+.+..|.. .+..++.+.||||...
T Consensus 55 ~~~i~viGDIHG~~~~L~~ll~~~g~~~~~~~vfLGD~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~ 128 (299)
T 3e7a_A 55 EAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS 128 (299)
T ss_dssp CSSEEEECBCTTCHHHHHHHHHHHCSTTSSCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHHhCCCCCccEEeCCcccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhh
Confidence 4579999999999764 5566666555678899999999963 444444432 2556999999999753
No 54
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=97.98 E-value=5.2e-06 Score=77.51 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=48.3
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
.++++++||+|++... .++++.......|.+|++||++|+. .+.+..|..+ +..++.+.||||...
T Consensus 69 ~~pi~ViGDIHG~~~dL~~ll~~~g~~~~~~~vfLGD~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~ 142 (357)
T 3ll8_A 69 DAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRH 142 (357)
T ss_dssp CSSEEEECCCTTCHHHHHHHHHHHCCTTTCCEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHH
T ss_pred cccceeeccCCCCHHHHHHHHHhcCCCCCcEEEECCCccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhh
Confidence 4579999999999753 5566655556678899999999963 4444444322 456999999999753
No 55
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=97.89 E-value=8.7e-06 Score=79.19 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCc---HHHHHHHHcC----CCCEEEEcCCCCCCc
Q 018902 36 ASVVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNEN---VEIVQSVAEL----EFPKAVILGNHDSWK 103 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~---~~~l~~l~~l----~~Pi~~V~GNHD~~~ 103 (349)
.-.++++++||+|++... .++++.......|.+|++||++|+. .+++..|..+ +..++.|.||||...
T Consensus 80 ~l~~pI~VIGDIHGq~~dL~~LL~~~g~p~~d~yVFLGDyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~ 155 (521)
T 1aui_A 80 DIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRH 155 (521)
T ss_dssp EECSSEEEECCCTTCHHHHHHHHHHHCCTTTCCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHH
T ss_pred eeccceeeccCCCCCHHHHHHHHHhcCCCCcceEEEcCCcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHH
Confidence 334789999999999764 4455533334568899999999963 4444444332 456999999999753
No 56
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=96.27 E-value=0.01 Score=57.24 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=45.2
Q ss_pred CCccEEEEEeCCCCCcCh-------HHHHHHhh-----------CCCCCEEEEcCCCCCCcH------------------
Q 018902 36 ASVVRIVIVGDVHDDWDL-------QEDSKALQ-----------LLKPDLVLFTGDFGNENV------------------ 79 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~-------~~~~~~i~-----------~~~pD~vI~~GDl~~~~~------------------ 79 (349)
.+.-+++++||+|.+... +.+++.+. ..++..+|++||+++...
T Consensus 198 ~~~~~ialVSGL~igs~~~~~~~~~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~~~~~e~~~~~~y~~~~~~~ 277 (476)
T 3e0j_A 198 DTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA 277 (476)
T ss_dssp SSCCEEEEECCCCBTSSCHHHHHHHHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC-------------CHHHHHH
T ss_pred CCCCEEEEECCcccCCCcccchHHHHHHHHHHcCCCCCccccchhhceeEEEEECCccccccccchhhhhhhccccccch
Confidence 455799999999998752 22344443 246889999999886310
Q ss_pred ---H-------HHHHHHcCCCCEEEEcCCCCCCc
Q 018902 80 ---E-------IVQSVAELEFPKAVILGNHDSWK 103 (349)
Q Consensus 80 ---~-------~l~~l~~l~~Pi~~V~GNHD~~~ 103 (349)
+ ++..|.. .+||.++|||||...
T Consensus 278 ~~~~~~~~ld~~L~~l~~-~i~V~lmPG~~DP~~ 310 (476)
T 3e0j_A 278 ASVEAVKMLDEILLQLSA-SVPVDVMPGEFDPTN 310 (476)
T ss_dssp HHHHHHHHHHHHHHHHHT-TSCEEEECCTTSSSC
T ss_pred hhHHHHHHHHHHHHhccc-CceEEecCCCCCccc
Confidence 1 2222222 689999999999754
No 57
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.15 Score=49.00 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=49.0
Q ss_pred CCccEEEEEeCCCCCcCh------HHHHHHhhCC-CCCEEEEcCCCCCCc----------------------HHHHH---
Q 018902 36 ASVVRIVIVGDVHDDWDL------QEDSKALQLL-KPDLVLFTGDFGNEN----------------------VEIVQ--- 83 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~~------~~~~~~i~~~-~pD~vI~~GDl~~~~----------------------~~~l~--- 83 (349)
..++++++.|..+..... .++++.++.. +||++|++|.++|.. .++.+
T Consensus 145 ~~~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~t~~~lF~~~i 224 (460)
T 3flo_A 145 GSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLF 224 (460)
T ss_dssp SSCEEEEEEESCCSCSSCCCCHHHHHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCSSHHHHHHHHT
T ss_pred CCCcEEEEEeCCccCCCccChHHHHHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccccccccCHHHHHHHHH
Confidence 367999999999986542 6678888775 899999999987521 12222
Q ss_pred --HHHcC--CCCEEEEcCCCCCCc
Q 018902 84 --SVAEL--EFPKAVILGNHDSWK 103 (349)
Q Consensus 84 --~l~~l--~~Pi~~V~GNHD~~~ 103 (349)
.+.++ .+.+++||||||...
T Consensus 225 ~~il~~l~~~t~VVlVPS~rD~~~ 248 (460)
T 3flo_A 225 TPILKTISPHIQTVLIPSTKDAIS 248 (460)
T ss_dssp HHHHTTSCTTSEEEEECCTTBTTC
T ss_pred HHHHHhccCCCEEEEeCCcccccC
Confidence 22333 356899999999863
No 58
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=88.73 E-value=0.97 Score=35.11 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=51.1
Q ss_pred CCCCCCccEEEEEeCCCCCcC-------------------hHHHHHHhhCCCCCEEEEcCCCC--C-CcHHHHHHHHcCC
Q 018902 32 PAMSASVVRIVIVGDVHDDWD-------------------LQEDSKALQLLKPDLVLFTGDFG--N-ENVEIVQSVAELE 89 (349)
Q Consensus 32 ~~~~~~~mril~iSDlH~~~~-------------------~~~~~~~i~~~~pD~vI~~GDl~--~-~~~~~l~~l~~l~ 89 (349)
..|..+.|||+++=|-..... .++.++.++..+||+||. |+. + ...++++.+.+..
T Consensus 2 s~m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll--Di~mP~~~G~el~~~lr~~~ 79 (123)
T 2lpm_A 2 SHMTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII--DVNLDGEPSYPVADILAERN 79 (123)
T ss_dssp CCCCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE--CSSSSSCCSHHHHHHHHHTC
T ss_pred CCCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE--ecCCCCCCHHHHHHHHHcCC
Confidence 467788899999999776321 255667777789999888 653 2 3578888888878
Q ss_pred CCEEEEcCCCCC
Q 018902 90 FPKAVILGNHDS 101 (349)
Q Consensus 90 ~Pi~~V~GNHD~ 101 (349)
+|++++-|+-|.
T Consensus 80 ipvI~lTa~~~~ 91 (123)
T 2lpm_A 80 VPFIFATGYGSK 91 (123)
T ss_dssp CSSCCBCTTCTT
T ss_pred CCEEEEecCccH
Confidence 999999997664
No 59
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=79.90 E-value=4.4 Score=31.42 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=44.6
Q ss_pred CCCCCccEEEEEeCCCCCc--------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--C
Q 018902 33 AMSASVVRIVIVGDVHDDW--------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--E 89 (349)
Q Consensus 33 ~~~~~~mril~iSDlH~~~--------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~ 89 (349)
.....+|||+++.|-.... ..++.++.+...+||+||+-=++.+ ...++++.+.+. .
T Consensus 15 ~~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 15 VPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp -----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCS
T ss_pred CCCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 3445678999998854310 1255677777889999998777765 356777777664 4
Q ss_pred CCEEEEcCCCC
Q 018902 90 FPKAVILGNHD 100 (349)
Q Consensus 90 ~Pi~~V~GNHD 100 (349)
+|++++.++.|
T Consensus 95 ~~ii~ls~~~~ 105 (150)
T 4e7p_A 95 TKVVVVTTFKR 105 (150)
T ss_dssp CEEEEEESCCC
T ss_pred CeEEEEeCCCC
Confidence 77888887766
No 60
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=79.42 E-value=3.2 Score=31.44 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=44.2
Q ss_pred CccEEEEEeCCCC-------C------cChH---HHH-HHhhCCCCCEEEEcCCCCCCcHHHHHHHH-cCCCC-EEEEcC
Q 018902 37 SVVRIVIVGDVHD-------D------WDLQ---EDS-KALQLLKPDLVLFTGDFGNENVEIVQSVA-ELEFP-KAVILG 97 (349)
Q Consensus 37 ~~mril~iSDlH~-------~------~~~~---~~~-~~i~~~~pD~vI~~GDl~~~~~~~l~~l~-~l~~P-i~~V~G 97 (349)
..||++++||--. | ...+ +.+ +.++..++..|+++=++.+.-.+.++.+. ....| ++.||+
T Consensus 2 ~~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~~~P~Il~IPs 81 (109)
T 2d00_A 2 VPVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAG 81 (109)
T ss_dssp CCCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTCCCCCEEEEESC
T ss_pred CccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHHhCCCCeEEEEECC
Confidence 3589999999322 0 1112 223 33335589999999999998888888885 44678 457999
Q ss_pred CCC
Q 018902 98 NHD 100 (349)
Q Consensus 98 NHD 100 (349)
+|+
T Consensus 82 ~~~ 84 (109)
T 2d00_A 82 LKE 84 (109)
T ss_dssp GGG
T ss_pred Ccc
Confidence 995
No 61
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=72.33 E-value=4.9 Score=31.88 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=44.0
Q ss_pred CcccCCCCCCCCCccEEEEEeCCCCCc--------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHH
Q 018902 25 PKTARSAPAMSASVVRIVIVGDVHDDW--------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQ 83 (349)
Q Consensus 25 ~~~~~~~~~~~~~~mril~iSDlH~~~--------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~ 83 (349)
++..+....|+..++||+++.|--... ...+.++.+...+||+||+-=++-+ ...++++
T Consensus 12 ~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~ 91 (164)
T 3t8y_A 12 SGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALK 91 (164)
T ss_dssp ------------CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHH
T ss_pred CCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHH
Confidence 344555667888889999999864310 1144556666668998888666654 3467777
Q ss_pred HHHcC-CCCEEEEcCCCCC
Q 018902 84 SVAEL-EFPKAVILGNHDS 101 (349)
Q Consensus 84 ~l~~l-~~Pi~~V~GNHD~ 101 (349)
.+.+. +.|++++.+..+.
T Consensus 92 ~lr~~~~~~ii~~s~~~~~ 110 (164)
T 3t8y_A 92 LIMKKAPTRVIMVSSLTEE 110 (164)
T ss_dssp HHHHHSCCEEEEEESSCCT
T ss_pred HHHhcCCceEEEEecCCcc
Confidence 77653 5788888887764
No 62
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=72.24 E-value=7.3 Score=33.34 Aligned_cols=67 Identities=10% Similarity=0.235 Sum_probs=45.0
Q ss_pred CCCccEEEEEeCCCCC------------c------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEE
Q 018902 35 SASVVRIVIVGDVHDD------------W------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKA 93 (349)
Q Consensus 35 ~~~~mril~iSDlH~~------------~------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~ 93 (349)
...++||+++-|--.. + ..++.++.+...+||+||+-=++-+ ...++++.+.+. .+|++
T Consensus 20 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 20 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3456899999885431 1 1244556666678999998655544 357788888764 57899
Q ss_pred EEcCCCCC
Q 018902 94 VILGNHDS 101 (349)
Q Consensus 94 ~V~GNHD~ 101 (349)
++-+..|.
T Consensus 100 ~lt~~~~~ 107 (250)
T 3r0j_A 100 FLTARDSL 107 (250)
T ss_dssp EEECSTTH
T ss_pred EEECCCCH
Confidence 88887763
No 63
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=71.33 E-value=5.8 Score=31.07 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=42.7
Q ss_pred CCccEEEEEeCCCCCc-------------------ChHHHHHHhhCC--CCCEEEEcCCCCC-CcHHHHHHHHcC--CCC
Q 018902 36 ASVVRIVIVGDVHDDW-------------------DLQEDSKALQLL--KPDLVLFTGDFGN-ENVEIVQSVAEL--EFP 91 (349)
Q Consensus 36 ~~~mril~iSDlH~~~-------------------~~~~~~~~i~~~--~pD~vI~~GDl~~-~~~~~l~~l~~l--~~P 91 (349)
..++||+++.|-.... ..++.++.+... +||+||+-=++.+ ...++++.+.+. .+|
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCC
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCc
Confidence 3457899998854311 114455666655 7899988666655 346777777653 578
Q ss_pred EEEEcCCCC
Q 018902 92 KAVILGNHD 100 (349)
Q Consensus 92 i~~V~GNHD 100 (349)
++++-++.|
T Consensus 114 ii~ls~~~~ 122 (157)
T 3hzh_A 114 VIMISALGK 122 (157)
T ss_dssp EEEEESCCC
T ss_pred EEEEeccCc
Confidence 888887766
No 64
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=66.59 E-value=3.9 Score=31.34 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=42.6
Q ss_pred cEEEEEeCCCC-------C------cCh---HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCC-EEEEcCCCCC
Q 018902 39 VRIVIVGDVHD-------D------WDL---QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFP-KAVILGNHDS 101 (349)
Q Consensus 39 mril~iSDlH~-------~------~~~---~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~P-i~~V~GNHD~ 101 (349)
||++++||--. + ... ++.++.+.+.++..|+++=++.+.-.+.++.+.+...| ++.||++|-.
T Consensus 3 mKiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~~~l~~~digIIlIte~ia~~i~~~i~~~~~~~~P~IveIPs~~g~ 82 (115)
T 3aon_B 3 YKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTIDEMAKNEYGVIYITEQCANLVPETIERYKGQLTPAIILIPSHQGT 82 (115)
T ss_dssp EEEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHHHHHHHTTEEEEEEEHHHHTTCHHHHHHHHTSSSCEEEEECBTTBC
T ss_pred eEEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhcCceEEEEeHHHHHHhHHHHHHHhCCCCCEEEEECCCCCC
Confidence 79999999322 0 111 22333333337788999999988877788887765578 4569998864
Q ss_pred C
Q 018902 102 W 102 (349)
Q Consensus 102 ~ 102 (349)
.
T Consensus 83 ~ 83 (115)
T 3aon_B 83 L 83 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 65
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=65.52 E-value=10 Score=28.58 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=40.4
Q ss_pred CCCCccEEEEEeCCCCCc------------------ChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcC--CCCEE
Q 018902 34 MSASVVRIVIVGDVHDDW------------------DLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAEL--EFPKA 93 (349)
Q Consensus 34 ~~~~~mril~iSDlH~~~------------------~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l--~~Pi~ 93 (349)
.....+||+++.|-.... ..++.++.+....||+|| ..|. ...++++.+.+. .+|++
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~~--~g~~~~~~l~~~~~~~~ii 90 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSDK--NALSFVSRIKEKHSSIVVL 90 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECST--THHHHHHHHHHHSTTSEEE
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcCc--cHHHHHHHHHhcCCCccEE
Confidence 345667999998865311 114456666677899998 3332 345666666553 57888
Q ss_pred EEcCCCC
Q 018902 94 VILGNHD 100 (349)
Q Consensus 94 ~V~GNHD 100 (349)
++-+..|
T Consensus 91 ~ls~~~~ 97 (137)
T 2pln_A 91 VSSDNPT 97 (137)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 8887766
No 66
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=64.60 E-value=20 Score=26.43 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=43.2
Q ss_pred CCccEEEEEeCCCCC------------c------ChHHHHHHhhCC-CCCEEEEcCCCCC--CcHHHHHHHHcC--CCCE
Q 018902 36 ASVVRIVIVGDVHDD------------W------DLQEDSKALQLL-KPDLVLFTGDFGN--ENVEIVQSVAEL--EFPK 92 (349)
Q Consensus 36 ~~~mril~iSDlH~~------------~------~~~~~~~~i~~~-~pD~vI~~GDl~~--~~~~~l~~l~~l--~~Pi 92 (349)
..++|++++.|-... + ..++.++.+... +||+||+-=++.+ ...++++.+.+. .+|+
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCE
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCE
Confidence 345778887765431 0 124556666666 8999998766654 356777777653 5788
Q ss_pred EEEcCCCCC
Q 018902 93 AVILGNHDS 101 (349)
Q Consensus 93 ~~V~GNHD~ 101 (349)
+++-+..+.
T Consensus 83 i~~s~~~~~ 91 (132)
T 2rdm_A 83 VYISGHAAL 91 (132)
T ss_dssp EEEESSCCT
T ss_pred EEEeCCccH
Confidence 888877764
No 67
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=64.42 E-value=7.3 Score=35.69 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCccEEEeCccCCCcccCCcceEEEEEcCCceEEEeeccc
Q 018902 226 QAISLLKETTKLCIPLVVFGHMHKELAYGNGLRKMIVVGADSTIYLNGAIV 276 (349)
Q Consensus 226 ~al~~l~~~~~~~~~lvl~GH~H~~~~~~~g~~~~~~~~~~gt~yvn~g~~ 276 (349)
+++.++++.. +.+++++||+|... . ... ..+.++-+++|+.
T Consensus 268 ~~~~~fl~~~--~~~~IV~GHt~~~~----~-~~~---~~~~~i~Idsg~~ 308 (342)
T 2z72_A 268 AELDTILQHF--NVNHIVVGHTSQER----V-LGL---FHNKVIAVDSSIK 308 (342)
T ss_dssp HHHHHHHHHH--TCSEEEECSSCCSS----C-EEE---TTTTEEECCCCGG
T ss_pred HHHHHHHHHC--CCcEEEECCCcccc----h-hhh---cCCCEEEEECCCC
Confidence 4556666643 58999999999872 1 111 1245667777764
No 68
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=63.87 E-value=19 Score=26.70 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=34.4
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC----CCCEEEEcCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL----EFPKAVILGNHDS 101 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l----~~Pi~~V~GNHD~ 101 (349)
++.++.+...+||+||+-=++.+ ...++++.+.+. .+|++++.++.+.
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~ 89 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPR 89 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcH
Confidence 55666777788999998666654 356778877764 5788888887663
No 69
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=63.64 E-value=27 Score=25.69 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=41.3
Q ss_pred CccEEEEEeCCCCC------------------cChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEE
Q 018902 37 SVVRIVIVGDVHDD------------------WDLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVI 95 (349)
Q Consensus 37 ~~mril~iSDlH~~------------------~~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V 95 (349)
.++|++++.|--.. ...++.++.+...+||+||+-=++.+ ...++++.+.+. ..|++++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVI 85 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 34688888775431 11255667777788999998666554 356777777654 4788888
Q ss_pred cCCCC
Q 018902 96 LGNHD 100 (349)
Q Consensus 96 ~GNHD 100 (349)
.+..+
T Consensus 86 t~~~~ 90 (130)
T 3eod_A 86 SATEN 90 (130)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 88766
No 70
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=63.38 E-value=23 Score=27.35 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=43.9
Q ss_pred CCccEEEEEeCCCCCc------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC----CCCE
Q 018902 36 ASVVRIVIVGDVHDDW------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL----EFPK 92 (349)
Q Consensus 36 ~~~mril~iSDlH~~~------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l----~~Pi 92 (349)
..++||+++.|--... ..++.++.+...+||+||+-=++.+ ...++++.+.+. .+|+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 4457888887754311 1255667777789999999766655 356778877653 5788
Q ss_pred EEEcCCCC
Q 018902 93 AVILGNHD 100 (349)
Q Consensus 93 ~~V~GNHD 100 (349)
+++.++.+
T Consensus 85 i~~s~~~~ 92 (154)
T 3gt7_A 85 ILLTILSD 92 (154)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 98888766
No 71
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=63.01 E-value=20 Score=27.07 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHc----CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAE----LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~----l~~Pi~~V~GNHD 100 (349)
++.++.+...+||+||+-=++.+ ...++++.+.+ ..+|++++.+..|
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~ 92 (144)
T 3kht_A 41 AKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVS 92 (144)
T ss_dssp HHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCC
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 55667777788999888555544 35678888876 2578888888766
No 72
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=62.62 E-value=17 Score=27.53 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=43.4
Q ss_pred CccEEEEEeCCCCCcC------------------hHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHc----CCCCEE
Q 018902 37 SVVRIVIVGDVHDDWD------------------LQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAE----LEFPKA 93 (349)
Q Consensus 37 ~~mril~iSDlH~~~~------------------~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~----l~~Pi~ 93 (349)
.++||+++.|-..... ..+.++.+....||+||+--++.+ ...++++.+.+ ..+|++
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii 86 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVI 86 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 4578888887654221 134555566668999999777755 35678888876 257888
Q ss_pred EEcCCCC
Q 018902 94 VILGNHD 100 (349)
Q Consensus 94 ~V~GNHD 100 (349)
++.+..+
T Consensus 87 ~ls~~~~ 93 (147)
T 2zay_A 87 ALSGRAT 93 (147)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 8888766
No 73
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=60.73 E-value=22 Score=27.23 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=44.7
Q ss_pred CCCccEEEEEeCCCCC------------c------ChHHHHHHhhCCCCCEEEEcCCCCCC-cHHHHHHHHcC--CCCEE
Q 018902 35 SASVVRIVIVGDVHDD------------W------DLQEDSKALQLLKPDLVLFTGDFGNE-NVEIVQSVAEL--EFPKA 93 (349)
Q Consensus 35 ~~~~mril~iSDlH~~------------~------~~~~~~~~i~~~~pD~vI~~GDl~~~-~~~~l~~l~~l--~~Pi~ 93 (349)
+..++||+++.|--.. + ...+.++.+...+||+||+-=++.+. ..++++.+.+. .+|++
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEE
Confidence 3456789998886431 1 12556667777889999997777653 46777777653 57888
Q ss_pred EEcCCCC
Q 018902 94 VILGNHD 100 (349)
Q Consensus 94 ~V~GNHD 100 (349)
++-+..+
T Consensus 91 ~~s~~~~ 97 (153)
T 3hv2_A 91 LLTGDPD 97 (153)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 8887666
No 74
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=60.02 E-value=11 Score=28.25 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=41.7
Q ss_pred CCccEEEEEeCCCCCc------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEE
Q 018902 36 ASVVRIVIVGDVHDDW------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAV 94 (349)
Q Consensus 36 ~~~mril~iSDlH~~~------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~ 94 (349)
..++||+++.|-.... ..++.++.+...+||+||+--++.+ ...++++.+.+. ..|+++
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEE
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 3457888888754311 1245566666678999999777765 356778877764 356666
Q ss_pred EcCCCC
Q 018902 95 ILGNHD 100 (349)
Q Consensus 95 V~GNHD 100 (349)
+.++.+
T Consensus 85 ~s~~~~ 90 (137)
T 3hdg_A 85 ISAFSE 90 (137)
T ss_dssp CCCCCC
T ss_pred EecCcC
Confidence 666555
No 75
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=58.72 E-value=24 Score=26.60 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=43.1
Q ss_pred CCccEEEEEeCCCCCc------------------ChHHHHHHhhC-CCCCEEEEcCCCCC--CcHHHHHHHHcC-CCCEE
Q 018902 36 ASVVRIVIVGDVHDDW------------------DLQEDSKALQL-LKPDLVLFTGDFGN--ENVEIVQSVAEL-EFPKA 93 (349)
Q Consensus 36 ~~~mril~iSDlH~~~------------------~~~~~~~~i~~-~~pD~vI~~GDl~~--~~~~~l~~l~~l-~~Pi~ 93 (349)
..++||+++.|-.... ...+.++.+.. ..||+||+-=++.+ ...++++.+.+. .+|++
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 3457888887754311 12455666665 78999999777743 456777766653 68899
Q ss_pred EEcCCCCCC
Q 018902 94 VILGNHDSW 102 (349)
Q Consensus 94 ~V~GNHD~~ 102 (349)
++.++.|..
T Consensus 83 ~ls~~~~~~ 91 (140)
T 3h5i_A 83 FLTAHTEPA 91 (140)
T ss_dssp EEESSSSCC
T ss_pred EEECCCCHH
Confidence 998887754
No 76
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=57.70 E-value=22 Score=26.71 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=44.3
Q ss_pred CCccEEEEEeCCCCCc------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHc--C--CCCE
Q 018902 36 ASVVRIVIVGDVHDDW------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAE--L--EFPK 92 (349)
Q Consensus 36 ~~~mril~iSDlH~~~------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~--l--~~Pi 92 (349)
..+++|+++.|-.... ..++.++.+....||+||+-=++.+ ...++++.+.+ . .+|+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pi 84 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAI 84 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCE
Confidence 3567888887764311 1145666677778999988766654 35677888766 2 4678
Q ss_pred EEEcCCCCCC
Q 018902 93 AVILGNHDSW 102 (349)
Q Consensus 93 ~~V~GNHD~~ 102 (349)
+++.++.+..
T Consensus 85 i~~s~~~~~~ 94 (142)
T 3cg4_A 85 VMLTAKNAPD 94 (142)
T ss_dssp EEEECTTCCC
T ss_pred EEEECCCCHH
Confidence 8887776643
No 77
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=56.20 E-value=30 Score=26.44 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=33.4
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
.+.++.+....||+||+--++.+ ...++++.+.+. ..|++++.+..+
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (153)
T 3cz5_A 41 GEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQG 90 (153)
T ss_dssp HHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 45666777778999998766654 346777777653 578888877665
No 78
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=54.29 E-value=9.6 Score=27.01 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=35.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
....+.++..+.-+||++.|...+....+..+.+ .++|++.+.++-+
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~e 64 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKK 64 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 4567788888999999999998754445555443 3899999986655
No 79
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=53.53 E-value=7.5 Score=21.06 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.0
Q ss_pred CCCCCCccEEEEEeCCCCC
Q 018902 32 PAMSASVVRIVIVGDVHDD 50 (349)
Q Consensus 32 ~~~~~~~mril~iSDlH~~ 50 (349)
++.+-++.+++++||+|..
T Consensus 6 ~~tqcdP~evivlsds~~~ 24 (26)
T 2kqs_B 6 VATQCDPEEIIVLSDSDXX 24 (26)
T ss_pred ccccCCcceEEEccccccc
Confidence 3445678999999999974
No 80
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=51.92 E-value=7.2 Score=28.99 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=27.6
Q ss_pred HhhCCCCCEEEEcCCCCCCcHHHH-HHHHcCCCC-EEEEcCCC
Q 018902 59 ALQLLKPDLVLFTGDFGNENVEIV-QSVAELEFP-KAVILGNH 99 (349)
Q Consensus 59 ~i~~~~pD~vI~~GDl~~~~~~~l-~~l~~l~~P-i~~V~GNH 99 (349)
.++..++..|+++=++.+.-.+.+ +...+...| ++.||++|
T Consensus 39 l~~~~digIIlite~~a~~i~~~i~~~~~~~~~P~Iv~IP~~~ 81 (101)
T 2ov6_A 39 VLEDKSVGILVMHNDDIGNLPEVLRKNLNESVQPTVVALGGSG 81 (101)
T ss_dssp HHHHTSSSEEEEEHHHHTTCTTTTHHHHHHHCCSCEEEECTTS
T ss_pred HhhCCCeEEEEEcHHHHHHhHHHHHHHHhCCCCcEEEEECCCC
Confidence 334558899999998887654444 444323456 66799999
No 81
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=50.55 E-value=1.3e+02 Score=26.56 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=27.3
Q ss_pred HHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 55 EDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 55 ~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
+.++.+...++|.||+.+.-. ..+.++.+.+.++|++.+
T Consensus 117 ~~~~~l~~~~vdGiI~~~~~~--~~~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 117 QLVETMLRRRPEAMVLSYDGH--TEQTIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHHTCCSEEEEECSCC--CHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCC--CHHHHHHHHhCCCCEEEE
Confidence 345555667899988887432 246677777778998887
No 82
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=50.31 E-value=24 Score=26.46 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=42.3
Q ss_pred CccEEEEEeCCCCCc------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC----CCCEE
Q 018902 37 SVVRIVIVGDVHDDW------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL----EFPKA 93 (349)
Q Consensus 37 ~~mril~iSDlH~~~------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l----~~Pi~ 93 (349)
.++||+++.|-.... ..++.++.+...+||+||+-=++.+ ...++++.+.+. .+|++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii 84 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIV 84 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 446888887755421 1245566677778999888555544 356778877752 57888
Q ss_pred EEcCCCC
Q 018902 94 VILGNHD 100 (349)
Q Consensus 94 ~V~GNHD 100 (349)
++.++.+
T Consensus 85 ~~s~~~~ 91 (140)
T 3grc_A 85 VVSANAR 91 (140)
T ss_dssp EECTTHH
T ss_pred EEecCCC
Confidence 8887655
No 83
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=49.93 E-value=27 Score=26.16 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=31.5
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
.+.++.+...+||+||+-- +.+ ...++++.+.+. .+|++++.++.|
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVD 86 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCC
T ss_pred HHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCC
Confidence 5566777778999988865 433 235666666543 478888887766
No 84
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=49.50 E-value=43 Score=25.01 Aligned_cols=65 Identities=12% Similarity=0.269 Sum_probs=43.8
Q ss_pred CCccEEEEEeCCCC------------Cc--------ChHHHHHHhhC----------CCCCEEEEcCCCCC-CcHHHHHH
Q 018902 36 ASVVRIVIVGDVHD------------DW--------DLQEDSKALQL----------LKPDLVLFTGDFGN-ENVEIVQS 84 (349)
Q Consensus 36 ~~~mril~iSDlH~------------~~--------~~~~~~~~i~~----------~~pD~vI~~GDl~~-~~~~~l~~ 84 (349)
..++||+++.|-.. +. ..++.++.+.. ..||+||+--++.+ ...++++.
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 83 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE 83 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHH
Confidence 45578888877543 11 12455666665 78999998776654 35678888
Q ss_pred HHcC----CCCEEEEcCCCC
Q 018902 85 VAEL----EFPKAVILGNHD 100 (349)
Q Consensus 85 l~~l----~~Pi~~V~GNHD 100 (349)
+.+. .+|++++.++.+
T Consensus 84 l~~~~~~~~~~ii~~t~~~~ 103 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSN 103 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCC
T ss_pred HHhCcccCCCeEEEEeCCCC
Confidence 8763 478888887766
No 85
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=49.22 E-value=38 Score=29.17 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=46.3
Q ss_pred cEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
.|.+...|.=-... .+.++.+.....|+|++.|...-. ..++++.+++...|++.-|||.|..
T Consensus 12 w~h~~~~DPdk~~~-~~~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~Piil~p~~~~~~ 77 (235)
T 3w01_A 12 WRHIFKLDPAKHIS-DDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLPLVLEISNIESV 77 (235)
T ss_dssp CCEEEEECTTSCCC-HHHHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHHTTSCSCEEEECCCSTTC
T ss_pred ceEEEeECCCCcCC-HHHHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHhcCcCCCEEEecCCHHHh
Confidence 46777778755444 345566677889999999976322 3567778877789999999999764
No 86
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=49.22 E-value=35 Score=26.31 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=44.9
Q ss_pred CCCCccEEEEEeCCCCC------------c-------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC----C
Q 018902 34 MSASVVRIVIVGDVHDD------------W-------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL----E 89 (349)
Q Consensus 34 ~~~~~mril~iSDlH~~------------~-------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l----~ 89 (349)
++++.|||+++=|-... + ...+.++.+...+||+||.==.+-+ +..++++.+++. .
T Consensus 8 ~m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 8 ILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp -CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 45678999999885441 1 1244556666678998887444433 357888888643 5
Q ss_pred CCEEEEcCCCC
Q 018902 90 FPKAVILGNHD 100 (349)
Q Consensus 90 ~Pi~~V~GNHD 100 (349)
+|++++-|+-+
T Consensus 88 ipvI~lTa~~~ 98 (134)
T 3to5_A 88 LPVLMITAEAK 98 (134)
T ss_dssp CCEEEEESSCC
T ss_pred CeEEEEECCCC
Confidence 89999999876
No 87
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=48.31 E-value=37 Score=25.33 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=41.9
Q ss_pred CCCCccEEEEEeCCCCC------------c--------ChHHHHHHhhC------CCCCEEEEcCCCCC-CcHHHHHHHH
Q 018902 34 MSASVVRIVIVGDVHDD------------W--------DLQEDSKALQL------LKPDLVLFTGDFGN-ENVEIVQSVA 86 (349)
Q Consensus 34 ~~~~~mril~iSDlH~~------------~--------~~~~~~~~i~~------~~pD~vI~~GDl~~-~~~~~l~~l~ 86 (349)
|+.+++||+++.|-... . ..++.++.+.. ..||+||+-=++.+ ...++++.+.
T Consensus 3 ~m~~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~ 82 (143)
T 2qvg_A 3 LAADKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELR 82 (143)
T ss_dssp ----CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHT
T ss_pred cccCCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 34566788888876531 1 11445566665 68999998766654 3567888876
Q ss_pred cC----CCCEEEEcCCCC
Q 018902 87 EL----EFPKAVILGNHD 100 (349)
Q Consensus 87 ~l----~~Pi~~V~GNHD 100 (349)
+. .+|++++.+..+
T Consensus 83 ~~~~~~~~~ii~ls~~~~ 100 (143)
T 2qvg_A 83 DDSSFTDIEVFVLTAAYT 100 (143)
T ss_dssp TSGGGTTCEEEEEESCCC
T ss_pred cCccccCCcEEEEeCCCC
Confidence 54 467888877665
No 88
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=47.40 E-value=40 Score=25.17 Aligned_cols=47 Identities=13% Similarity=0.274 Sum_probs=32.8
Q ss_pred HHHHHHhh--CCCCCEEEEcCCCCCC-cHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQ--LLKPDLVLFTGDFGNE-NVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~--~~~pD~vI~~GDl~~~-~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
++.++.+. ...||+||+--++.+. ..++++.+.+. .+|++++.++.|
T Consensus 37 ~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 88 (143)
T 3jte_A 37 TEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGD 88 (143)
T ss_dssp HHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTC
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 44555665 5789999997777653 46677777653 478888887766
No 89
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=46.46 E-value=28 Score=31.04 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=30.2
Q ss_pred HHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCC
Q 018902 57 SKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
++.+.+.+||+||..+.. ..+..+.|.++++|++++..+..
T Consensus 77 ~E~i~~l~PDlIi~~~~~---~~~~~~~L~~~Gipvv~~~~~~~ 117 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYA---PSEMIKQISDVNIPVVAISLRTG 117 (326)
T ss_dssp HHHHHHTCCSEEEEETTC---CHHHHHHHHTTTCCEEEECSCCS
T ss_pred HHHHHccCCCEEEEeCCC---ChHHHHHHHHcCCCEEEEecccc
Confidence 344455899999987532 35678889998999999976543
No 90
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=45.95 E-value=19 Score=27.15 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=35.0
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
+...+.++..++-+||++.|.......-++.+.. .++|++.++|+-+
T Consensus 32 ~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~ 79 (112)
T 3iz5_f 32 KTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNV 79 (112)
T ss_dssp HHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHH
Confidence 5577888888999999999997654444444433 4799998877766
No 91
>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}
Probab=45.92 E-value=24 Score=31.58 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=30.3
Q ss_pred HHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 57 SKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
++.|.+.+||+||..+...+...+..+.|.++. |++++..+
T Consensus 108 ~E~I~~l~PDLIi~~~~~~~~~~~~~~~L~~~g-pvv~~~~~ 148 (326)
T 3tlk_A 108 AEAVAAQMPDLILISATGGDSALALYDQLSTIA-PTLIINYD 148 (326)
T ss_dssp HHHHHTTCCSEEEEESSSTTCCGGGHHHHHTTS-CEEEECCS
T ss_pred HHHHhhCCCCEEEEeCCCccchHHHHHHHHhhC-CEEEEcCC
Confidence 466667899999987655444456778888888 99988643
No 92
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=44.92 E-value=1.5e+02 Score=25.37 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=31.4
Q ss_pred hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 53 LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 53 ~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
....++.+...++|.||+.+--.+. +.++.+.+.++|++.+--
T Consensus 54 ~~~~~~~l~~~~vdGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 54 YQSLIHLVETRRVDALIVAHTQPED--FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp CHHHHHHHHHTCCSEEEECSCCSSC--HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCCh--HHHHHHHhCCCCEEEECC
Confidence 3567777777899999998754433 667777777899877643
No 93
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=44.08 E-value=46 Score=28.78 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=40.2
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.++++++.+.+.+... .+.++.+...++|.||+.+--.+...+.++.+.+.++|++.+-.
T Consensus 34 g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 34 NVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDS 94 (305)
T ss_dssp TCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred CCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 4667765665554432 34566666679999999874444445678888777899887643
No 94
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=44.06 E-value=39 Score=25.67 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCCccEEEEEeCCCCCc--------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCC
Q 018902 35 SASVVRIVIVGDVHDDW--------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFP 91 (349)
Q Consensus 35 ~~~~mril~iSDlH~~~--------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~P 91 (349)
...+.||+++.|-.... ..++.++.+...+||+||+-=++.+ ...++++.+.+. ..|
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 91 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTR 91 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCE
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCe
Confidence 34567899998865411 1144556666678999998776655 356777777664 467
Q ss_pred EEEEcCCCC
Q 018902 92 KAVILGNHD 100 (349)
Q Consensus 92 i~~V~GNHD 100 (349)
++++.+..|
T Consensus 92 ii~~s~~~~ 100 (152)
T 3eul_A 92 VLLISAHDE 100 (152)
T ss_dssp EEEEESCCC
T ss_pred EEEEEccCC
Confidence 777777655
No 95
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=43.85 E-value=42 Score=25.85 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHc-CCCCEEEEcCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAE-LEFPKAVILGNHDS 101 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~-l~~Pi~~V~GNHD~ 101 (349)
....+.++..+.-+||++.|... +....+..+.. .++|++++.+|-++
T Consensus 30 ~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 30 HEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASL 79 (126)
T ss_dssp HHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHH
Confidence 45677788889999999999975 55566666654 48999999877764
No 96
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=43.81 E-value=42 Score=25.13 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=27.8
Q ss_pred HHHHHhhCCCCCEEEEc--CC--CCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 55 EDSKALQLLKPDLVLFT--GD--FGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 55 ~~~~~i~~~~pD~vI~~--GD--l~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.+++.+.+.+ ++++++ || +++...++++.+.+.++++-+|||
T Consensus 71 ~i~~~~~~G~-~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPG 116 (117)
T 3hh1_A 71 QVIELLEEGS-DVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPG 116 (117)
T ss_dssp HHHHHHHTTC-CEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC-
T ss_pred HHHHHHHCCC-eEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCC
Confidence 3455554433 555554 99 446667888888777899999998
No 97
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=43.63 E-value=31 Score=29.44 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=30.0
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.++.+.+.+||+||..+... ..+..+.|.++++|++++..
T Consensus 51 n~E~i~~l~PDlIi~~~~~~--~~~~~~~L~~~gipvv~~~~ 90 (255)
T 3md9_A 51 NAEGILAMKPTMLLVSELAQ--PSLVLTQIASSGVNVVTVPG 90 (255)
T ss_dssp CHHHHHTTCCSEEEEETTCS--CHHHHHHHHHTTCEEEEECC
T ss_pred CHHHHHccCCCEEEEcCCcC--chhHHHHHHHcCCcEEEeCC
Confidence 45666779999998876542 24677888888899998864
No 98
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=43.55 E-value=63 Score=23.55 Aligned_cols=47 Identities=13% Similarity=0.350 Sum_probs=32.0
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC---CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL---EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l---~~Pi~~V~GNHD 100 (349)
++.++.+...+||+||+-=++.+ ...++++.+.+. +.|++++...++
T Consensus 40 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~ 90 (132)
T 3lte_A 40 FDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLD 90 (132)
T ss_dssp HHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSC
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCC
Confidence 45566677789999988666655 356788888764 346666666655
No 99
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=41.05 E-value=56 Score=27.96 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=37.8
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.+++++. +...+.. ..+.++.+...++|.||+.+--.+...+.++.+.+.++|++.+-.
T Consensus 38 g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 38 KYEALVA-TSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp TCEEEEE-ECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESS
T ss_pred CCEEEEE-CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecC
Confidence 3555544 3333322 234566666789999999875444445778888777999887743
No 100
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=40.64 E-value=41 Score=29.27 Aligned_cols=40 Identities=13% Similarity=0.305 Sum_probs=29.4
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.++.|.+.+||+||..+... ..+..+.|.++.+|++.+..
T Consensus 51 n~E~i~~l~PDLIi~~~~~~--~~~~~~~L~~~gipvv~~~~ 90 (283)
T 2r79_A 51 AAEGVLALRPDILIGTEEMG--PPPVLKQLEGAGVRVETLSA 90 (283)
T ss_dssp CHHHHHTTCCSEEEECTTCC--CHHHHHHHHHTTCCEEECCC
T ss_pred CHHHHHhcCCCEEEEeCccC--cHHHHHHHHHcCCcEEEecC
Confidence 45666778999998765432 35677888888899988754
No 101
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=39.88 E-value=71 Score=27.11 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=37.1
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.+++++.. .+.... ..+.++.+...++|.||+.+--. .+.++.+.+.++|++.+-
T Consensus 37 g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 37 GYIGVLFD-ANADIEREKTLLRAIGSRGFDGLILQSFSN---PQTVQEILHQQMPVVSVD 92 (276)
T ss_dssp TCEEEEEE-CTTCHHHHHHHHHHHHTTTCSEEEEESSCC---HHHHHHHHTTSSCEEEES
T ss_pred CCEEEEEe-CCCCHHHHHHHHHHHHhCCCCEEEEecCCc---HHHHHHHHHCCCCEEEEe
Confidence 45655543 333322 24566777788999999988544 677888887799988773
No 102
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=39.63 E-value=27 Score=31.40 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 57 SKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
++.|.+.+||+||..+. ..+..+.|.++++|++++.
T Consensus 109 ~E~i~al~PDLIi~~~~----~~~~~~~L~~~gipvv~~~ 144 (335)
T 4hn9_A 109 TEACVAATPDVVFLPMK----LKKTADTLESLGIKAVVVN 144 (335)
T ss_dssp HHHHHHTCCSEEEEEGG----GHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHhcCCCEEEEeCc----chhHHHHHHHcCCCEEEEc
Confidence 45555689999988653 3567888988899999885
No 103
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.36 E-value=39 Score=24.60 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHH-cCCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVA-ELEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~-~l~~Pi~~V~GNHD 100 (349)
+...+.++..+.-+||++.|...+....+..+. ..++|++...++-+
T Consensus 21 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~ 68 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSV 68 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSC
T ss_pred HHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHH
Confidence 456778888899999999995433334444433 34799887755544
No 104
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=38.98 E-value=2e+02 Score=25.13 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=26.0
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.++.+...++|.||+.+.-.+ ...+.+.+.+.++|++++-.
T Consensus 111 ~~~~l~~~~vdgiIi~~~~~~-~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 111 AIQYLLDLRCDAIMIYPRFLS-VDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHTTCSEEEECCSSSC-HHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHhCCCCEEEEeCCCCC-hHHHHHHHHcCCCCEEEEcC
Confidence 455555678999888874333 23455556666788777643
No 105
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=38.94 E-value=39 Score=28.81 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.++.+.+.+||+||..+... ..+..+.|.++.+|++.+..
T Consensus 51 n~E~i~~l~PDLIi~~~~~~--~~~~~~~L~~~gipvv~~~~ 90 (256)
T 2r7a_A 51 SSEGILSLRPDSVITWQDAG--PQIVLDQLRAQKVNVVTLPR 90 (256)
T ss_dssp CHHHHHTTCCSEEEEETTCS--CHHHHHHHHHTTCEEEEECC
T ss_pred CHHHHHccCCCEEEEcCCCC--CHHHHHHHHHcCCcEEEecC
Confidence 35566678999999876422 35677888888899988864
No 106
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=38.75 E-value=29 Score=25.89 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILG 97 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~G 97 (349)
+...+.++..++-+||++.|...+....+..+.. .++|++.+++
T Consensus 27 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~ 71 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKI 71 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCS
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4567788888999999999994444444444443 3789877644
No 107
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=38.34 E-value=43 Score=28.43 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=42.2
Q ss_pred CccEEEEEeCCCCCc------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC-CCCEEEEc
Q 018902 37 SVVRIVIVGDVHDDW------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL-EFPKAVIL 96 (349)
Q Consensus 37 ~~mril~iSDlH~~~------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l-~~Pi~~V~ 96 (349)
.++||+++-|-.... ...+.++.+....||+||+-=++-+ ...++++.+.+. .+|++++-
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt 115 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLT 115 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 346899998865411 1144556666778999888544443 245677777654 47898888
Q ss_pred CCCCC
Q 018902 97 GNHDS 101 (349)
Q Consensus 97 GNHD~ 101 (349)
+.-|.
T Consensus 116 ~~~~~ 120 (249)
T 3q9s_A 116 ARDTV 120 (249)
T ss_dssp SCCSH
T ss_pred CCCCH
Confidence 87763
No 108
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=37.92 E-value=57 Score=24.12 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=41.7
Q ss_pred CCCccEEEEEeCCCCCc------------------ChHHHHHHhhC-CCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCE
Q 018902 35 SASVVRIVIVGDVHDDW------------------DLQEDSKALQL-LKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPK 92 (349)
Q Consensus 35 ~~~~mril~iSDlH~~~------------------~~~~~~~~i~~-~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi 92 (349)
....++|+++.|-.... ...+.++.+.. ..||+||+-=++.+ ...++++.+.+. .+|+
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~i 91 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSV 91 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEE
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCE
Confidence 34567888888765311 11445566666 78999988666654 356778887764 4788
Q ss_pred EEEc-CCCCC
Q 018902 93 AVIL-GNHDS 101 (349)
Q Consensus 93 ~~V~-GNHD~ 101 (349)
+++- ++.+.
T Consensus 92 i~ls~~~~~~ 101 (138)
T 2b4a_A 92 LILTTGRHEL 101 (138)
T ss_dssp EEEESCC--C
T ss_pred EEEECCCCCH
Confidence 8888 66554
No 109
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=37.64 E-value=26 Score=30.93 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=27.8
Q ss_pred HHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 58 KALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 58 ~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
+.|.+.+||+||..+...+...+..+.|.++. |++++..+
T Consensus 80 E~I~al~PDLIi~~~~~~~~~~~~~~~L~~~~-Pvv~~~~~ 119 (305)
T 3r5t_A 80 ESVYVEQPDLIVVSMIGADSARDQIPLLQAIA-PTILVDYS 119 (305)
T ss_dssp HHHHHHCCSEEEEESSSTTCCGGGHHHHHTTS-CEEEECCT
T ss_pred HHHHhcCCCEEEEecccccccHHHHHHHHHhC-CEEEEcCC
Confidence 34445799999987754433346678888877 99888643
No 110
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=37.64 E-value=51 Score=25.04 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=41.9
Q ss_pred CccEEEEEeCCCCCc------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEE
Q 018902 37 SVVRIVIVGDVHDDW------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVI 95 (349)
Q Consensus 37 ~~mril~iSDlH~~~------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V 95 (349)
+++||+++.|-.... ...+.++.+....||+||+--++.+ ...++++.+.+. .+|++++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVI 85 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 456788887754311 1245666777778999998766655 346777777653 4778877
Q ss_pred cCCCC
Q 018902 96 LGNHD 100 (349)
Q Consensus 96 ~GNHD 100 (349)
.+..+
T Consensus 86 s~~~~ 90 (154)
T 2rjn_A 86 SGYAD 90 (154)
T ss_dssp ECGGG
T ss_pred ecCCC
Confidence 76555
No 111
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=37.63 E-value=43 Score=24.53 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEc
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVIL 96 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~ 96 (349)
+...+.++..++-+||++.|.......-+..+.. .++|++.+.
T Consensus 25 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 25 DLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEES
T ss_pred hhhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeec
Confidence 4567788888999999999998765444444433 478988873
No 112
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=37.10 E-value=41 Score=25.61 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCC-cHHHHHHHH-cCCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNE-NVEIVQSVA-ELEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~-~~~~l~~l~-~l~~Pi~~V~GNHD 100 (349)
....+.++..+.-+||++.|.... ....+..+. ..++|+++++++-+
T Consensus 26 ~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~e 74 (121)
T 2lbw_A 26 KEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQD 74 (121)
T ss_dssp HHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 456778888899999999999885 355555554 35899988876655
No 113
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=36.65 E-value=32 Score=25.52 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=32.0
Q ss_pred HHHHHHhhCCCCCEEEEcCCCC-----C-CcHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFG-----N-ENVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~-----~-~~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
++.++.+...+||+||+--++. + ...++++.+.+. .+|++++.+..+
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred HHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 4566666677899999977765 3 345677776553 578888876654
No 114
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=36.48 E-value=71 Score=24.11 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=28.3
Q ss_pred CCCCCEEEEcCCCCCC-cHHHHHHHHc----CCCCEEEEcCCCC
Q 018902 62 LLKPDLVLFTGDFGNE-NVEIVQSVAE----LEFPKAVILGNHD 100 (349)
Q Consensus 62 ~~~pD~vI~~GDl~~~-~~~~l~~l~~----l~~Pi~~V~GNHD 100 (349)
..+||+||+-=++-+. ..++++.+.+ ..+|++++.+..+
T Consensus 57 ~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp TTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCC
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCC
Confidence 5689998886555543 4678887776 2578999988776
No 115
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=36.23 E-value=46 Score=24.76 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHHHhhC-CCCCEEEEcCCCC-C-CcHHHHHHHHc----CCCCEEEEcCCCC
Q 018902 54 QEDSKALQL-LKPDLVLFTGDFG-N-ENVEIVQSVAE----LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~-~~pD~vI~~GDl~-~-~~~~~l~~l~~----l~~Pi~~V~GNHD 100 (349)
++.++.+.. .+||+||+-=++- + ...++++.+.+ ..+|++++-+..|
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~ 92 (140)
T 3lua_A 39 KKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDN 92 (140)
T ss_dssp HHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCC
T ss_pred HHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCC
Confidence 445556666 7899999866665 3 24567777765 2688999888776
No 116
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=36.00 E-value=1.9e+02 Score=24.04 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=35.2
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.+++++.. .+.+.. ....++.+...++|.||+.+-... ..+.++.+.+.++|++.+-
T Consensus 32 g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 32 GYQLLIAS-SDDQPDSERQLQQLFRARRCDALFVASCLPP-EDDSYRELQDKGLPVIAID 89 (272)
T ss_dssp TCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCCCCS-SCCHHHHHHHTTCCEEEES
T ss_pred CCEEEEEe-CCCCHHHHHHHHHHHHHcCCCEEEEecCccc-cHHHHHHHHHcCCCEEEEc
Confidence 45655543 333322 244666677789999999875422 2355666766789987763
No 117
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=35.68 E-value=75 Score=23.55 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=37.9
Q ss_pred CCccEEEEEeCCCCC-------------c-------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC-C-CCE
Q 018902 36 ASVVRIVIVGDVHDD-------------W-------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL-E-FPK 92 (349)
Q Consensus 36 ~~~mril~iSDlH~~-------------~-------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l-~-~Pi 92 (349)
..++||+++.|-... . ...+.++.+....||+||+-=++.+ ...++++.+.+. + .|+
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 86 (143)
T 2qv0_A 7 GEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFI 86 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEE
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceE
Confidence 445788888775431 1 1144556666678999988766654 356788888764 2 345
Q ss_pred EEEcCC
Q 018902 93 AVILGN 98 (349)
Q Consensus 93 ~~V~GN 98 (349)
+++-+.
T Consensus 87 i~~s~~ 92 (143)
T 2qv0_A 87 VFITAW 92 (143)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 666654
No 118
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=35.61 E-value=78 Score=27.01 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=34.7
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+.+++.. ...+.. ..+.++.+...++|.||+.+-..+...+.++.+.+.++|++.+
T Consensus 31 g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (283)
T 2ioy_A 31 GYKIIVED-SQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITI 88 (283)
T ss_dssp TCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEe
Confidence 35555543 333222 1345566667899999997743333345677777778998776
No 119
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=35.31 E-value=48 Score=25.15 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=31.3
Q ss_pred HHHHHHhhCCCC-CEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKP-DLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~p-D~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
.+.++.+...+| |+||+-=++.+ ...++++.+.+. ..|++++.++.|
T Consensus 37 ~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 87 (151)
T 3kcn_A 37 PEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQD 87 (151)
T ss_dssp HHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGG
T ss_pred HHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 455666666665 99998777655 346777777653 467887777655
No 120
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=35.23 E-value=44 Score=25.44 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
++.++.+....||+||+--++.+ ...++++.+.+. .+|++++.+..+
T Consensus 37 ~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 44555566678999998777765 346677776553 578888877655
No 121
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=35.21 E-value=42 Score=24.50 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=29.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEcC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVILG 97 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~G 97 (349)
+...+.++..+.-+||++.|...+....+..+.+ .++|++.+.+
T Consensus 22 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~~~ 66 (101)
T 1w41_A 22 RKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEG 66 (101)
T ss_dssp HHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEecC
Confidence 4567778888999999999944333344444433 3789877643
No 122
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=34.50 E-value=40 Score=24.64 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHc-CCCCEEEEc
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAE-LEFPKAVIL 96 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~-l~~Pi~~V~ 96 (349)
+...+.++..++-+||++.|.......-+..+.. .++|++.+.
T Consensus 24 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~ 67 (101)
T 3on1_A 24 EQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVG 67 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 4567788888999999999998754444444432 378988763
No 123
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=34.24 E-value=85 Score=26.71 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=35.3
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.+++++. |...+.. ..+.++.+...++|.||+.+--.+...+.++.+.+.++|++.+-
T Consensus 32 g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~ 90 (290)
T 2fn9_A 32 GYEATIF-DSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVD 90 (290)
T ss_dssp TCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEe-CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEe
Confidence 3555543 3333322 13456666677999999987443433456777776789987763
No 124
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=34.21 E-value=71 Score=27.72 Aligned_cols=61 Identities=5% Similarity=-0.020 Sum_probs=39.8
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNH 99 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNH 99 (349)
.+++++.. ...+.. ..+.++.+...++|.||+.+--.+...+.++.+.+.++|++.+-...
T Consensus 32 g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 93 (313)
T 3m9w_A 32 GAKVFVQS-ANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMI 93 (313)
T ss_dssp SCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCC
T ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcC
Confidence 45655543 333322 23456666778999999988555545678888888789988775443
No 125
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=33.09 E-value=98 Score=25.31 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=43.9
Q ss_pred CccEEEEEeCCCCCc------------------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEE
Q 018902 37 SVVRIVIVGDVHDDW------------------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVI 95 (349)
Q Consensus 37 ~~mril~iSDlH~~~------------------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V 95 (349)
.+|||+++.|-.... ...+.++.+....||+||+-=++-+ ...++++.+.+. .+|++++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVL 85 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 347888887754311 1244556666678999988666654 356778877654 5889998
Q ss_pred cCCCCCC
Q 018902 96 LGNHDSW 102 (349)
Q Consensus 96 ~GNHD~~ 102 (349)
-+..|..
T Consensus 86 t~~~~~~ 92 (233)
T 1ys7_A 86 SARSSVD 92 (233)
T ss_dssp ECCCTTT
T ss_pred EcCCCHH
Confidence 8877754
No 126
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=32.72 E-value=41 Score=29.38 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHcCCCCE--------------EEEcCCCCC
Q 018902 63 LKPDLVLFTGDFGNENVEIVQSVAELEFPK--------------AVILGNHDS 101 (349)
Q Consensus 63 ~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi--------------~~V~GNHD~ 101 (349)
..||+|+++. -..+ ...+++-..+++|+ |.||||-|-
T Consensus 157 ~~Pdll~V~D-p~~e-~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds 207 (256)
T 2vqe_B 157 RLPDAIFVVD-PTKE-AIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDA 207 (256)
T ss_dssp SCCSEEEESC-TTTT-HHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSC
T ss_pred cCCCEEEEeC-Cccc-hHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCch
Confidence 4799888875 2222 34555555668886 567888774
No 127
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=32.53 E-value=43 Score=28.31 Aligned_cols=38 Identities=24% Similarity=0.179 Sum_probs=26.3
Q ss_pred HHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 57 SKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
++.+.+.+||+||....- ...+..+.|.++.+|++++.
T Consensus 50 ~E~i~~l~PDLIi~~~~~--~~~~~~~~L~~~gipvv~~~ 87 (245)
T 1n2z_A 50 LERIVALKPDLVIAWRGG--NAERQVDQLASLGIKVMWVD 87 (245)
T ss_dssp HHHHHHTCCSEEEECTTT--SCHHHHHHHHHHTCCEEECC
T ss_pred HHHHhccCCCEEEEeCCC--CcHHHHHHHHHCCCcEEEeC
Confidence 445556899999875321 23567788888889988763
No 128
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.38 E-value=80 Score=23.14 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=40.0
Q ss_pred CccEEEEEeCCCCCc------------------ChHHHHHHhhCCC-CCEEEEcCCCCC-CcHHHHHHHHcC---CCCEE
Q 018902 37 SVVRIVIVGDVHDDW------------------DLQEDSKALQLLK-PDLVLFTGDFGN-ENVEIVQSVAEL---EFPKA 93 (349)
Q Consensus 37 ~~mril~iSDlH~~~------------------~~~~~~~~i~~~~-pD~vI~~GDl~~-~~~~~l~~l~~l---~~Pi~ 93 (349)
.++||+++.|--... ...+....+.... ||+||+-=++.+ ...++++.+.+. .+|++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii 85 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSII 85 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEE
Confidence 456888888754311 1133444454444 899888766655 356788888764 36778
Q ss_pred EEcCCCC
Q 018902 94 VILGNHD 100 (349)
Q Consensus 94 ~V~GNHD 100 (349)
++.+..+
T Consensus 86 ~~s~~~~ 92 (136)
T 3hdv_A 86 VVSGDTD 92 (136)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 8777666
No 129
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=32.25 E-value=63 Score=28.09 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=29.7
Q ss_pred HHHHhhCCCCCEEEEcCC--CCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 56 DSKALQLLKPDLVLFTGD--FGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
+++.+.+.+-=+++.+|| ++....++++.+.+.++++-+|||
T Consensus 69 i~~~~~~G~~Va~L~~GDP~iyg~~~~l~~~l~~~gi~veviPG 112 (264)
T 3ndc_A 69 IAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPG 112 (264)
T ss_dssp HHHHHHHTCCEEEEESBCTTSSCSHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHCCCeEEEEeCCCCccccHHHHHHHHHHhCCCCEEEeCC
Confidence 334443444446788999 456667788888877889999998
No 130
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=32.04 E-value=59 Score=24.52 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCc-HHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNEN-VEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~-~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
....+.++..+.-+||++.|..... ...+..+.+ .++|++++..+-+
T Consensus 33 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~e 81 (119)
T 1rlg_A 33 NETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKND 81 (119)
T ss_dssp HHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHH
Confidence 4567788888999999999997642 444444433 3788777765444
No 131
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=31.98 E-value=92 Score=26.38 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=44.1
Q ss_pred CCccEEEEEeCCCCCcC------------------hHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEE
Q 018902 36 ASVVRIVIVGDVHDDWD------------------LQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAV 94 (349)
Q Consensus 36 ~~~mril~iSDlH~~~~------------------~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~ 94 (349)
..++||+++-|-..... .++.++.+....||+||+-=++-+ ...++++.+.+. .+|+++
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~ 206 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIG 206 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 45689999998765211 144556666678999888655543 345666666543 689999
Q ss_pred EcCCCCC
Q 018902 95 ILGNHDS 101 (349)
Q Consensus 95 V~GNHD~ 101 (349)
+-++.+.
T Consensus 207 lt~~~~~ 213 (254)
T 2ayx_A 207 VTANALA 213 (254)
T ss_dssp EESSTTS
T ss_pred EECCCCH
Confidence 9988763
No 132
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=31.78 E-value=92 Score=22.87 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=33.6
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC----CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL----EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l----~~Pi~~V~GNHD 100 (349)
++.++.+...+||+||+--++.+ ...++++.+.+. .+|++++.+..+
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCC
Confidence 44566666678999999877765 356788888762 467888877665
No 133
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=31.26 E-value=1.3e+02 Score=21.54 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=33.6
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC----CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL----EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l----~~Pi~~V~GNHD 100 (349)
++.++.+...+||+||+-=.+-+ ...++++.+.+. .+|++++-++-+
T Consensus 36 ~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~ 87 (122)
T 3gl9_A 36 QIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGG 87 (122)
T ss_dssp HHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCS
T ss_pred HHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCc
Confidence 55667777789999888444433 356788888653 478999988766
No 134
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=31.20 E-value=26 Score=26.17 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC--C-cHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN--E-NVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~--~-~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
++.++.+...+||+||+-=++.+ . ..++++.+.+. .+|++++.+..|
T Consensus 40 ~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 91 (136)
T 3kto_A 40 ESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSD 91 (136)
T ss_dssp HHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCC
T ss_pred HHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCC
Confidence 33444455567898888655544 3 45777777664 578999988776
No 135
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=31.11 E-value=1.1e+02 Score=24.77 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=26.6
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHHc------CCCCEEEEcCCC
Q 018902 63 LKPDLVLFTGDFGN-ENVEIVQSVAE------LEFPKAVILGNH 99 (349)
Q Consensus 63 ~~pD~vI~~GDl~~-~~~~~l~~l~~------l~~Pi~~V~GNH 99 (349)
..||+||+-=++-+ ...++++.+.+ ..+|++++-|+-
T Consensus 118 ~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 118 LPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp CSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 38999988655544 34677777664 358999999987
No 136
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=30.43 E-value=33 Score=29.29 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=26.7
Q ss_pred HHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 57 SKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
++.+.+.+||+||..+.. ..+..+.|.++.+|++++..
T Consensus 53 ~E~i~~l~PDLIi~~~~~---~~~~~~~L~~~gipvv~~~~ 90 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVSTI---KDEMQPFYKQLNMKGYFYDF 90 (260)
T ss_dssp HHHHHHTCCSEEEEEGGG---HHHHHHHHHHHTSCCEEECC
T ss_pred HHHHHhcCCCEEEecCcc---CHHHHHHHHHcCCcEEEecC
Confidence 444556899999876532 24567778888889888854
No 137
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=30.14 E-value=97 Score=26.15 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=34.8
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++++. +...+.. ..+.++.+...++|.+|+.+--.+...+.++.+.+.++|++.+
T Consensus 31 g~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i 88 (271)
T 2dri_A 31 GYNLVVL-DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITL 88 (271)
T ss_dssp TCEEEEE-ECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEe-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEe
Confidence 3555554 3333322 2345666667899999987633333345677777678998776
No 138
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=30.03 E-value=1.1e+02 Score=25.99 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCCEEEEcCCCC---CCcHHHHHHHHcCCCCEEEEcCC
Q 018902 55 EDSKALQLLKPDLVLFTGDFG---NENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 55 ~~~~~i~~~~pD~vI~~GDl~---~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
+.++.+...++|.||+.+--. +...+.++.+.+.++|++.+-..
T Consensus 62 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 108 (298)
T 3tb6_A 62 RGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINAS 108 (298)
T ss_dssp HHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecC
Confidence 455666678999999887432 24567788888789998877443
No 139
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=29.88 E-value=84 Score=26.85 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=32.9
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
.+.++.+...++|.||+.+--.+...+.++.+.+.++|++.+-...+
T Consensus 59 ~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~ 105 (304)
T 3gbv_A 59 VATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIK 105 (304)
T ss_dssp HHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCT
T ss_pred HHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34566777889999999875443445677777777899887754433
No 140
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=29.87 E-value=62 Score=25.68 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=41.0
Q ss_pred CccEEEEEeCCCCC------------c------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEE
Q 018902 37 SVVRIVIVGDVHDD------------W------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVI 95 (349)
Q Consensus 37 ~~mril~iSDlH~~------------~------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V 95 (349)
.++||+++-|--.. + ...+.++.+...+||+||+-=++-+ ...++++.+.+. .+|++++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l 85 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVL 85 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEE
Confidence 34688888775431 1 1255667777788999888433333 346777777653 5788888
Q ss_pred cCCCC
Q 018902 96 LGNHD 100 (349)
Q Consensus 96 ~GNHD 100 (349)
-|+.|
T Consensus 86 t~~~~ 90 (184)
T 3rqi_A 86 TGYAS 90 (184)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 88766
No 141
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=29.66 E-value=48 Score=25.05 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCC-cHHHHHHHH-cCCCCEEEEcCCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNE-NVEIVQSVA-ELEFPKAVILGNHDSW 102 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~-~~~~l~~l~-~l~~Pi~~V~GNHD~~ 102 (349)
......++..+.-+||++.|.... ....+..+. ..++|++++.+.-++.
T Consensus 31 ~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 31 NHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLG 81 (113)
T ss_dssp HHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTH
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 557778888899999999999763 233344443 3589999999987753
No 142
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=29.53 E-value=74 Score=27.22 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=44.4
Q ss_pred cEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCC---cHHHHHHHHcCCCCEEEEcCCCCCC
Q 018902 39 VRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNE---NVEIVQSVAELEFPKAVILGNHDSW 102 (349)
Q Consensus 39 mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~---~~~~l~~l~~l~~Pi~~V~GNHD~~ 102 (349)
.|.+...|.=-... .+.++.+.....|+|++.|=..-. ..++++.+++.+.|++.-|||++..
T Consensus 7 w~h~~~iDPdk~~~-~~~~~~~~~~GtD~i~vGGs~gvt~~~~~~~v~~ik~~~~Pvvlfp~~~~~v 72 (228)
T 3vzx_A 7 WKHVFKLDPNKDLP-DEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAI 72 (228)
T ss_dssp CCEEEEECTTSCCC-TTHHHHHHTSSCSEEEECCCSCCCHHHHHHHHHHHTTSSSCEEEECSCGGGC
T ss_pred eeEEEeECCCCCCC-HHHHHHHHHcCCCEEEECCcCCCCHHHHHHHHHHhhccCCCEEEeCCCHHHc
Confidence 46677777754333 235566667889999999964222 3567777777789999999998753
No 143
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=29.45 E-value=75 Score=27.32 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=28.6
Q ss_pred HHHhhCCCCCEEEEcCC--CCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 57 SKALQLLKPDLVLFTGD--FGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
++.+.+.+-=+++.+|| ++....++++.+.+.++++-+|||
T Consensus 71 ~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPG 113 (253)
T 4e16_A 71 REGIENNKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPG 113 (253)
T ss_dssp HHHHHTTCCEEEEESBCTTTTCCHHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHCCCcEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECC
Confidence 34444444345777999 456667777877776889999998
No 144
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.19 E-value=97 Score=26.45 Aligned_cols=56 Identities=14% Similarity=-0.019 Sum_probs=33.8
Q ss_pred ccEEEEEeCCCCCc-ChHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDW-DLQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~-~~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.+++++. +..... ......+.+...++|.||+++--.+ .+.++.+.+.++|++.+-
T Consensus 40 g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 40 QYHLVVT-PHIHAKDSMVPIRYILETGSADGVIISKIEPN--DPRVRFMTERNMPFVTHG 96 (288)
T ss_dssp SCEEEEC-CBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT--CHHHHHHHHTTCCEEEES
T ss_pred CCEEEEe-cCCcchhHHHHHHHHHHcCCccEEEEecCCCC--cHHHHHHhhCCCCEEEEC
Confidence 4555544 332222 2244555566789999999873322 256677777789987654
No 145
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=29.00 E-value=1.3e+02 Score=21.80 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=34.2
Q ss_pred HHHHHHhhC-------CCCCEEEEcCCCCC-CcHHHHHHHHcC----CCCEEEEcCCCC
Q 018902 54 QEDSKALQL-------LKPDLVLFTGDFGN-ENVEIVQSVAEL----EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~-------~~pD~vI~~GDl~~-~~~~~l~~l~~l----~~Pi~~V~GNHD 100 (349)
.+.++.+.. ..||+||+--++.+ ...++++.+.+. .+|++++.+..+
T Consensus 38 ~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 38 MEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp HHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCC
T ss_pred HHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCc
Confidence 556666766 78999999777755 356778877763 478888888766
No 146
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=28.60 E-value=42 Score=26.15 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=33.9
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCC-cHHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNE-NVEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~-~~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
....+.++..+.-+||++.|.... ....+..+.+ .++|++++.++-+
T Consensus 38 ~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e 86 (134)
T 2ale_A 38 NEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVA 86 (134)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHH
T ss_pred hHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 456777888899999999999874 4444544433 4899888865544
No 147
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=28.30 E-value=99 Score=22.83 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=31.4
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC-CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL-EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l-~~Pi~~V~GNHD 100 (349)
.+.++.+...+||+||+-=++-+ ...++++.+.+. .+|++++.+..+
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~ 86 (136)
T 2qzj_A 38 EEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINE 86 (136)
T ss_dssp HHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCC
Confidence 45566666678998887444433 346778887754 578888777655
No 148
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=27.82 E-value=79 Score=27.16 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHhhCCCCCEEEEcCC--CCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 54 QEDSKALQLLKPDLVLFTGD--FGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
+.+++.+++.+-=+++..|| ++.....+++.+.+.++++-+|||
T Consensus 87 ~~i~~~~~~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~viPG 132 (259)
T 2e0n_A 87 ASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMTPG 132 (259)
T ss_dssp HHHHHHHHTTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHCCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEeCC
Confidence 44555555444346777899 445667788888877889999998
No 149
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=27.81 E-value=86 Score=26.40 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=18.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHcCCCCEEE
Q 018902 64 KPDLVLFTGDFGNENVEIVQSVAELEFPKAV 94 (349)
Q Consensus 64 ~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~ 94 (349)
.||+++++ |--.+ ...+++-.++++|+++
T Consensus 115 ~PdlliV~-Dp~~e-~~ai~EA~~l~IPvIa 143 (208)
T 1vi6_A 115 EPEVVFVN-DPAID-KQAVSEATAVGIPVVA 143 (208)
T ss_dssp CCSEEEES-CTTTT-HHHHHHHHHTTCCEEE
T ss_pred CCCEEEEE-CCCcc-hhHHHHHHHhCCCEEE
Confidence 69988887 44333 3455555666888753
No 150
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=27.73 E-value=1.5e+02 Score=21.16 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=33.1
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCC-cHHHHHHHHcC-CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNE-NVEIVQSVAEL-EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~-~~~~l~~l~~l-~~Pi~~V~GNHD 100 (349)
++.++.+...+||+||+-=++-+. ..++++.+.+. +.|++++.++.+
T Consensus 36 ~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 36 NEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDS 84 (120)
T ss_dssp HHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSC
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCC
Confidence 556677778899998885444442 45677777653 578888888766
No 151
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=27.61 E-value=1.3e+02 Score=23.95 Aligned_cols=49 Identities=8% Similarity=0.083 Sum_probs=34.4
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEEcCCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVILGNHDSW 102 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V~GNHD~~ 102 (349)
.+.++.+....||+||+-=++-+ ...++++.+.+. .+|++++-++.|..
T Consensus 38 ~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~ 89 (208)
T 1yio_A 38 STFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIP 89 (208)
T ss_dssp HHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSC
T ss_pred HHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHH
Confidence 45566666778998888544544 356778877654 57899998887753
No 152
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=27.60 E-value=1.5e+02 Score=25.60 Aligned_cols=59 Identities=7% Similarity=0.004 Sum_probs=36.5
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.+++.++.....+... .+.++.+...++|.||+.+--.+.....++.+.+.++|++.+-
T Consensus 30 g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 30 GVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLD 89 (313)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeC
Confidence 3566665422333221 3455666667999999887444444466777777789988763
No 153
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=27.54 E-value=54 Score=30.22 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=27.8
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
+.+.+++.+||+|++.||...... .+. ....++|++.+-++
T Consensus 86 l~~~l~~~kPD~Vlv~gd~~~~~a-ala-A~~~~IPv~h~eag 126 (385)
T 4hwg_A 86 VDEVLEKEKPDAVLFYGDTNSCLS-AIA-AKRRKIPIFHMEAG 126 (385)
T ss_dssp HHHHHHHHCCSEEEEESCSGGGGG-HHH-HHHTTCCEEEESCC
T ss_pred HHHHHHhcCCcEEEEECCchHHHH-HHH-HHHhCCCEEEEeCC
Confidence 445556779999999999764332 222 23458998887765
No 154
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=27.45 E-value=1.2e+02 Score=26.72 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=26.4
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.++.+...++|.||+++-- ...+.++.+.+.++|++.+
T Consensus 116 ~i~~l~~~~vdGiIi~~~~--~~~~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 116 VLYEMLSWRPSGVIIAGLE--HSEAARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHTTCCSEEEEECSC--CCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHhCCCCEEEEECCC--CCHHHHHHHHhCCCCEEEE
Confidence 4555667788988887732 2336677777778998877
No 155
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=27.40 E-value=97 Score=26.74 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=35.3
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.+++++. +...+.. ..+.++.+...++|.||+.+--.+...+.++.+.+.++|++.+-
T Consensus 32 g~~l~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 90 (306)
T 2vk2_A 32 GITLKIA-DGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLD 90 (306)
T ss_dssp TCEEEEE-ECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEe-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEec
Confidence 3555544 3333322 13455666667899999987443333466777776789987764
No 156
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.16 E-value=89 Score=26.84 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=38.4
Q ss_pred ccEEEEEeCCC-CCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 38 VVRIVIVGDVH-DDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 38 ~mril~iSDlH-~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
.+++.+...-. .+.. ..+.++.+...++|.||+.+--.+.....++.+.+.++|++.+-..
T Consensus 33 g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 95 (297)
T 3rot_A 33 KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTR 95 (297)
T ss_dssp TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCC
T ss_pred CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 45666554211 1221 2345666667899999998755555567777777778998877433
No 157
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.74 E-value=1e+02 Score=25.83 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=28.4
Q ss_pred HHHhhCCCCCEEEEcCC--CCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 57 SKALQLLKPDLVLFTGD--FGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
++.+++.+-=+++..|| ++.....+++.+.+.++++-+|||
T Consensus 88 ~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPG 130 (232)
T 2qbu_A 88 AAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPG 130 (232)
T ss_dssp HHHHHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCC
Confidence 34443333336777899 445667788888777889999998
No 158
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=26.71 E-value=64 Score=24.35 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=32.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCc-HHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNEN-VEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~-~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
....+.++..+.-+||++.|..... ...+..+.+ .++|++++..+-+
T Consensus 35 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~e 83 (120)
T 1vq8_F 35 NETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDD 83 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 4566777788999999999998642 444444443 4788777765444
No 159
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.67 E-value=1.5e+02 Score=21.70 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=33.8
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC----CCCEEEEcCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL----EFPKAVILGNHDS 101 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l----~~Pi~~V~GNHD~ 101 (349)
++.++.+....||+||+-=++-+ ...++++.+.+. .+|++++-++.+.
T Consensus 38 ~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~ 90 (136)
T 3t6k_A 38 EEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDI 90 (136)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCH
Confidence 55666777789999988555544 356777777653 5789999887763
No 160
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=25.92 E-value=53 Score=24.88 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCc-HHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNEN-VEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~-~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
....+.++..+.-+||++.|..... ...+..+.+ .++|++++..+-+
T Consensus 35 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e 83 (120)
T 1xbi_A 35 NEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQD 83 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHH
Confidence 4567777788999999999997642 343444433 3788777765544
No 161
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=25.68 E-value=2e+02 Score=24.36 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=34.4
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++++. +...+.. ..+.++.+...++|.||+.+--.+. +.++.+.+.++|++.+
T Consensus 38 g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~~~l~~~~iPvV~~ 93 (287)
T 3bbl_A 38 NYFVLPF-PFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND--PRVQFLLKQKFPFVAF 93 (287)
T ss_dssp TCEEEEC-CCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC--HHHHHHHHTTCCEEEE
T ss_pred CCEEEEE-eCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc--HHHHHHHhcCCCEEEE
Confidence 3565543 4333222 2556777778899999987632222 5566676668998776
No 162
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.64 E-value=1.1e+02 Score=21.98 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=34.7
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCC-cHHHHHHHHcC----CCCEEEEcCCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNE-NVEIVQSVAEL----EFPKAVILGNHDSW 102 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~-~~~~l~~l~~l----~~Pi~~V~GNHD~~ 102 (349)
++.++.+...+||+||+-=++.+. ..++++.+.+. .+|++++.+..+..
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 90 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTT
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchh
Confidence 556667777889999997777653 46778877764 46788888877754
No 163
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=25.56 E-value=1.1e+02 Score=27.04 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=27.3
Q ss_pred HHhhCCCCCEEEEcCC--CCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 58 KALQLLKPDLVLFTGD--FGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 58 ~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
+.+.+.+-=+++..|| ++....+.++.+.+.++++-+|||
T Consensus 97 ~~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~vevIPG 138 (294)
T 2ybo_A 97 RLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPG 138 (294)
T ss_dssp HHHHTTCCEEEEEEBCTTSSSSHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHCCCeEEEEcCCCCCccCCHHHHHHHHHHCCCCEEEECC
Confidence 3343333335667899 456667777888777889999998
No 164
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=25.53 E-value=65 Score=24.50 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCc-HHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNEN-VEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~-~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
+...+.++..+.-+||++.|..... ...+..+.+ .++|++++..+-+
T Consensus 34 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~e 82 (124)
T 2fc3_A 34 NETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKR 82 (124)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHH
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 4567778888999999999997642 333444432 4788777765444
No 165
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=25.39 E-value=1e+02 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=28.8
Q ss_pred HHHHhhCCCCCEEEEcCC--CCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 56 DSKALQLLKPDLVLFTGD--FGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
+++.+.+.+-=+++..|| ++....++++.+.+.++++-+|||
T Consensus 86 i~~~~~~g~~Vv~L~~GDP~i~g~~~~l~~~l~~~gi~veviPG 129 (285)
T 1cbf_A 86 MLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPG 129 (285)
T ss_dssp HHHHHTTTCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHCCCeEEEEeCCCccccccHHHHHHHHHHCCCcEEEECC
Confidence 334443334346777899 455667778888777888999998
No 166
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=25.21 E-value=93 Score=27.05 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=17.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHcCCCCEE
Q 018902 64 KPDLVLFTGDFGNENVEIVQSVAELEFPKA 93 (349)
Q Consensus 64 ~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~ 93 (349)
.||+|+++ |-..+ ...+++-.++++|++
T Consensus 151 ~PdlliV~-Dp~~e-~~AI~EA~~lgIPvI 178 (253)
T 3bch_A 151 EPRLLVVT-DPRAD-HQPLTEASYVNLPTI 178 (253)
T ss_dssp SCSEEEES-CTTTT-HHHHHHHHHTTCCEE
T ss_pred CCCEEEEE-CCCcc-chHHHHHHHhCCCEE
Confidence 68988877 43333 345555556678865
No 167
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=25.02 E-value=1.2e+02 Score=26.68 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=25.9
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.++.+...++|.||+.+--.+ ...++.+.+.++|++.+
T Consensus 110 ~~~~l~~~~vdGiIi~~~~~~--~~~~~~l~~~~iPvV~~ 147 (339)
T 3h5o_A 110 LLRAYLQHRPDGVLITGLSHA--EPFERILSQHALPVVYM 147 (339)
T ss_dssp HHHHHHTTCCSEEEEECSCCC--TTHHHHHHHTTCCEEEE
T ss_pred HHHHHHcCCCCEEEEeCCCCC--HHHHHHHhcCCCCEEEE
Confidence 455566778999888873222 24566666678998877
No 168
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=25.01 E-value=1.4e+02 Score=21.89 Aligned_cols=64 Identities=8% Similarity=0.095 Sum_probs=42.4
Q ss_pred CccEEEEEeCCCC------------Cc--------ChHHHHHHhhC-----CCCCEEEEcCCCCC-CcHHHHHHHHc---
Q 018902 37 SVVRIVIVGDVHD------------DW--------DLQEDSKALQL-----LKPDLVLFTGDFGN-ENVEIVQSVAE--- 87 (349)
Q Consensus 37 ~~mril~iSDlH~------------~~--------~~~~~~~~i~~-----~~pD~vI~~GDl~~-~~~~~l~~l~~--- 87 (349)
+++||+++.|--. +. ..++.++.+.. ..||+||+-=++-+ ...++++.+.+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 4578888877532 11 12455666666 78999998666654 34677777765
Q ss_pred ---CCCCEEEEcCCCC
Q 018902 88 ---LEFPKAVILGNHD 100 (349)
Q Consensus 88 ---l~~Pi~~V~GNHD 100 (349)
...|++++.+..|
T Consensus 88 ~~~~~~~ii~~t~~~~ 103 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLD 103 (146)
T ss_dssp GGTTTCEEEEECSSCC
T ss_pred hccCCCeEEEEeCCCC
Confidence 2577888888776
No 169
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=24.98 E-value=96 Score=26.01 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=30.8
Q ss_pred HHHHHhhCCC-CCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 55 EDSKALQLLK-PDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 55 ~~~~~i~~~~-pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
+.++.+...+ +|.||+.+--.....+.++.+.+.++|++.+-..
T Consensus 49 ~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~ 93 (276)
T 3ksm_A 49 QILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSD 93 (276)
T ss_dssp HHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4555555667 9999998843334567788887779998887433
No 170
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=24.87 E-value=82 Score=27.03 Aligned_cols=57 Identities=7% Similarity=-0.021 Sum_probs=35.7
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.++++++.. . +.. ....++.+...++|.||+.+--.+.....++.+.+.++|++.+-
T Consensus 32 g~~~~~~~~-~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 32 GFEVIKIAV-P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp TEEEEEEEC-C-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCEEEEeCC-C-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeC
Confidence 466665543 2 221 23456666667899999988433333456777777789987764
No 171
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=24.82 E-value=78 Score=27.14 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=29.8
Q ss_pred HHHHHhhCCCCCEEEEcCC--CCCCcHHHHHHHHc----CCCCEEEEcC
Q 018902 55 EDSKALQLLKPDLVLFTGD--FGNENVEIVQSVAE----LEFPKAVILG 97 (349)
Q Consensus 55 ~~~~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~----l~~Pi~~V~G 97 (349)
.+++.+.+.+-=+++.+|| ++....++++.+.+ .++++-+|||
T Consensus 70 ~li~~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPG 118 (251)
T 3nut_A 70 HALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPG 118 (251)
T ss_dssp HHHHHHHTTCEEEEEESBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECC
T ss_pred HHHHHHHCCCeEEEEeCCCcccccCHHHHHHHHHhhcccCCCcEEEECC
Confidence 3555555444336777999 44556677888876 5789999998
No 172
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=24.65 E-value=75 Score=27.43 Aligned_cols=28 Identities=14% Similarity=0.407 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHcCCCCEE
Q 018902 64 KPDLVLFTGDFGNENVEIVQSVAELEFPKA 93 (349)
Q Consensus 64 ~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~ 93 (349)
.||+|+++ |--.+ ...++.-.++++|++
T Consensus 114 ~PdlliV~-Dp~~e-~~ai~EA~~l~IPvI 141 (241)
T 2xzm_B 114 EPRVLIVT-DPRSD-FQAIKEASYVNIPVI 141 (241)
T ss_dssp CCSEEEES-CTTTT-HHHHHHHTTTTCCEE
T ss_pred CCCEEEEE-CCCcc-hHHHHHHHHhCCCEE
Confidence 68888887 44333 345555556677775
No 173
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=24.40 E-value=96 Score=23.54 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=32.6
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCc-HHHHHHHH-cCCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNEN-VEIVQSVA-ELEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~-~~~l~~l~-~l~~Pi~~V~GNHD 100 (349)
+...+.++..+.-+||++.|..... ...+..+. ..++|++++..+-+
T Consensus 37 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e 85 (122)
T 3o85_A 37 NEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNA 85 (122)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHH
Confidence 4567788888999999999998643 34444443 34789777765444
No 174
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=24.25 E-value=1.1e+02 Score=26.23 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=34.0
Q ss_pred EEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 40 RIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 40 ril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
++++. +...+.. ....++.+...++|.||+.+--.+...+.++.+.+.++|++.+
T Consensus 35 ~~~~~-~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~ 90 (309)
T 2fvy_A 35 QLLMN-DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF 90 (309)
T ss_dssp EEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEE
T ss_pred EEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEe
Confidence 55544 4443322 2345666667899999997733222345677777778998877
No 175
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=24.14 E-value=87 Score=26.40 Aligned_cols=42 Identities=17% Similarity=0.020 Sum_probs=28.1
Q ss_pred HHHhhCCCCCEEEEcCC--CCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 57 SKALQLLKPDLVLFTGD--FGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 57 ~~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
++.+++.+-=+++.+|| ++....++++.+.+.++++-+|||=
T Consensus 72 ~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGi 115 (235)
T 1ve2_A 72 IALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGV 115 (235)
T ss_dssp HHHHHTTCEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEEECCC
T ss_pred HHHHHcCCeEEEEcCCCCCcccCHHHHHHHHHHCCCCEEEECCH
Confidence 34443333335668999 4566667777777667899999984
No 176
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=24.09 E-value=1.1e+02 Score=26.65 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=23.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHcCCCCEE--------------EEcCCCCCC
Q 018902 64 KPDLVLFTGDFGNENVEIVQSVAELEFPKA--------------VILGNHDSW 102 (349)
Q Consensus 64 ~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~--------------~V~GNHD~~ 102 (349)
.||+||++ |--.+ ...++.-+.+++|++ .||||.|-.
T Consensus 117 ~PdllvV~-Dp~~d-~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~Ndds~ 167 (252)
T 3u5c_A 117 EPRLVIVT-DPRSD-AQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGK 167 (252)
T ss_dssp CCSEEEES-CTTTT-HHHHHHHHTTTCCEEEEECTTCCCTTCSSEEECCTTST
T ss_pred CCceEEEe-CCccc-hHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeCCCCCc
Confidence 68888887 43322 345555566778875 578888754
No 177
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.90 E-value=1.3e+02 Score=20.80 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=33.0
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC----CCCEEEEcCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL----EFPKAVILGNHDS 101 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l----~~Pi~~V~GNHD~ 101 (349)
++.++.+....||++|+--++.+ ...++++.+.+. .+|++++.+..+.
T Consensus 35 ~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~ 87 (119)
T 2j48_A 35 STALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPV 87 (119)
T ss_dssp HHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCS
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCc
Confidence 44556666668999998777654 346777777653 4788888776663
No 178
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=23.90 E-value=80 Score=26.93 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCCCEEEE--cCC--CCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 54 QEDSKALQLLKPDLVLF--TGD--FGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~--~GD--l~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
+.+++.+.+- -+++++ +|| +++...+.++.+.+.++++-+|||
T Consensus 74 ~~i~~~~~~G-~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPG 120 (242)
T 1wyz_A 74 SGYLKPLAGG-ASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVG 120 (242)
T ss_dssp HHHHHHHHTT-CCEEEECC-------CHHHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHcC-CEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCc
Confidence 3345555443 366666 699 445556777777777899999998
No 179
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=23.85 E-value=76 Score=27.22 Aligned_cols=59 Identities=12% Similarity=-0.035 Sum_probs=35.7
Q ss_pred ccEEEEEeCCCCCcCh-HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDWDL-QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.++++++.+...+... .+.++.+...++|.||+.+--.+.....++.+.+.++|++.+-
T Consensus 34 g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~ 93 (303)
T 3d02_A 34 NLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNE 93 (303)
T ss_dssp TEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEe
Confidence 4677666555444322 3355666667899999887422222345666666688987763
No 180
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=23.48 E-value=1.3e+02 Score=26.20 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=29.6
Q ss_pred HHHHhhCCCCCEEEEcCC--CCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 56 DSKALQLLKPDLVLFTGD--FGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
+++.+++.+-=+++..|| ++....+.++.+.+.++++-+|||=
T Consensus 85 l~~~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGi 129 (280)
T 1s4d_A 85 LVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGI 129 (280)
T ss_dssp HHHHHHTTCCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEEECCC
T ss_pred HHHHHhCCCeEEEEcCCCCccccCHHHHHHHHHHCCCCEEEEcCc
Confidence 334444444335667899 4566677888888778999999994
No 181
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=23.42 E-value=1.1e+02 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=28.7
Q ss_pred hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 53 LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 53 ~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
..+.++.+...++|.||+.+--.+ .+.++.+.+ ++|++.+-
T Consensus 55 ~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~~~~-~iPvV~i~ 95 (289)
T 3k9c_A 55 EKVAVQALMRERCEAAILLGTRFD--TDELGALAD-RVPALVVA 95 (289)
T ss_dssp HHHHHHHHTTTTEEEEEEETCCCC--HHHHHHHHT-TSCEEEES
T ss_pred HHHHHHHHHhCCCCEEEEECCCCC--HHHHHHHHc-CCCEEEEc
Confidence 455677777788999988873332 366777776 89987764
No 182
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=23.41 E-value=1e+02 Score=26.27 Aligned_cols=41 Identities=10% Similarity=-0.168 Sum_probs=27.8
Q ss_pred HHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 55 EDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 55 ~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
+.++.+...++|.||+++--.+...+.++.+.+.++|++.+
T Consensus 50 ~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 90 (288)
T 1gud_A 50 QLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNL 90 (288)
T ss_dssp HHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEE
Confidence 45666667889999987643333345667776668898776
No 183
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.32 E-value=97 Score=26.40 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=36.5
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCCC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGNH 99 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GNH 99 (349)
.+++++. +.+.+.. ....++.+...++|.||+.+--. ..+.++.+.+.++|++++--.-
T Consensus 38 g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~~~~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 38 GYSVLLA-NTAEDIVREREAVGQFFERRVDGLILAPSEG--EHDYLRTELPKTFPIVAVNREL 97 (291)
T ss_dssp TCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--CCHHHHHSSCTTSCEEEESSCC
T ss_pred CCEEEEE-eCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--ChHHHHHhhccCCCEEEEeccc
Confidence 3455443 3333322 24466677778999999887543 3466777777789988774433
No 184
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=23.22 E-value=1.1e+02 Score=25.85 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=24.8
Q ss_pred EEEEcCC--CCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 67 LVLFTGD--FGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 67 ~vI~~GD--l~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
+++.+|| ++....++++.+.+.++++-+|||=
T Consensus 79 ~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGi 112 (239)
T 1va0_A 79 VRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGV 112 (239)
T ss_dssp EEEESBCTTSSSSHHHHHHHHHHTTCCEEEECCC
T ss_pred EEEeCCCCccccCHHHHHHHHHHCCCcEEEECCc
Confidence 5668999 4556677788887778899999983
No 185
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=23.05 E-value=63 Score=27.59 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=35.5
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.+++++. +...... ....++.+...++|.||+.+--.....+.++.+.+.++|++.+-.
T Consensus 35 g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 35 GGTAIAL-DAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp TCEEEEE-ECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCEEEEE-cCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecC
Confidence 3555554 3333322 234566666678999998764322334667777777899887743
No 186
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=22.94 E-value=1.2e+02 Score=22.09 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=41.7
Q ss_pred CCccEEEEEeCCCCCc-------------------ChHHHHHHhhCCCCCEEEEcCCCC-C-CcHHHHHHHHc-CCCCEE
Q 018902 36 ASVVRIVIVGDVHDDW-------------------DLQEDSKALQLLKPDLVLFTGDFG-N-ENVEIVQSVAE-LEFPKA 93 (349)
Q Consensus 36 ~~~mril~iSDlH~~~-------------------~~~~~~~~i~~~~pD~vI~~GDl~-~-~~~~~l~~l~~-l~~Pi~ 93 (349)
..++||+++.|-.... ..++.++.+...+||+||+-=++. + ...++++.+.+ ..+|++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii 86 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPII 86 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEE
Confidence 3457888887754311 114455666666899999977774 3 44566666654 368888
Q ss_pred EEcCCCC
Q 018902 94 VILGNHD 100 (349)
Q Consensus 94 ~V~GNHD 100 (349)
++.+..+
T Consensus 87 ~ls~~~~ 93 (140)
T 3cg0_A 87 FITSSQD 93 (140)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 8887766
No 187
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.85 E-value=89 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHcCCCCEE
Q 018902 64 KPDLVLFTGDFGNENVEIVQSVAELEFPKA 93 (349)
Q Consensus 64 ~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~ 93 (349)
.||+||++ |-..+ ...++.-.++++|++
T Consensus 118 ~PdlliV~-Dp~~e-~~AI~EA~~lgIPvI 145 (295)
T 2zkq_b 118 EPRLLVVT-DPRAD-HQPLTEASYVNLPTI 145 (295)
T ss_dssp CCSEEEES-CTTTT-HHHHHHHHHHTCCEE
T ss_pred CCCeEEEe-CCCcc-hhHHHHHHHhCCCEE
Confidence 68988877 43333 344555555677764
No 188
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=22.73 E-value=2.1e+02 Score=24.45 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=29.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.+.++.+...++|.||+.+--.+. .+.++.+.+ ++|++.+-.
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~~l~~-~iPvV~i~~ 102 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFD-DDMLAAVLE-GVPAVTINS 102 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCC-HHHHHHHHT-TSCEEEESC
T ss_pred HHHHHHHHhCCCcEEEEecCCCCc-HHHHHHHhC-CCCEEEECC
Confidence 446677778899999998743332 126777777 999877743
No 189
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=22.69 E-value=1.6e+02 Score=24.96 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=33.3
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++++. +...+.. ..+.++.+...++|.||+.+--. ..+.++.+.+.++|++.+
T Consensus 46 g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~~l~~~~iPvV~~ 101 (289)
T 2fep_A 46 KYNIILS-NSDQNMEKELHLLNTMLGKQVDGIVFMGGNI--TDEHVAEFKRSPVPIVLA 101 (289)
T ss_dssp TCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCSCC--CHHHHHHHHHSSSCEEEE
T ss_pred CCEEEEE-eCCCCHHHHHHHHHHHHhCCCCEEEEecCCC--CHHHHHHHHhcCCCEEEE
Confidence 3555543 3333322 23456666678999999987322 245666676678998877
No 190
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.67 E-value=1.4e+02 Score=25.61 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=29.8
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILG 97 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~G 97 (349)
.+.++.+...++|.||+++--.+ .+.++.+.+.++|++.+-.
T Consensus 58 ~~~~~~l~~~~vdGiI~~~~~~~--~~~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 58 DEVYKMIKQRMVDAFILLYSKEN--DPIKQMLIDESMPFIVIGK 99 (295)
T ss_dssp HHHHHHHHTTCCSEEEESCCCTT--CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHhCCcCEEEEcCcccC--hHHHHHHHhCCCCEEEECC
Confidence 34667777889999999874332 2566777777899887743
No 191
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=22.61 E-value=78 Score=24.53 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcH-HHHHHHHc-CCCCEEEEcCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENV-EIVQSVAE-LEFPKAVILGNH 99 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~-~~l~~l~~-l~~Pi~~V~GNH 99 (349)
+...+.++..+.-+||++.|...... ..+..+.+ .++|++++..+-
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~ 94 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKV 94 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHH
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHH
Confidence 45677788889999999999988632 55555543 478988775443
No 192
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=22.36 E-value=68 Score=28.85 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=24.0
Q ss_pred HHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 58 KALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 58 ~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
+.+.+.+||+||..+. ......+.+..+++|++++..+
T Consensus 90 E~Ilal~PDLIi~~~~---~~~~~~~~~~~~GiPvv~~~~~ 127 (346)
T 2etv_A 90 ESLITLQPDVVFITYV---DRXTAXDIQEXTGIPVVVLSYG 127 (346)
T ss_dssp HHHHHHCCSEEEEESC---CHHHHHHHHHHHTSCEEEECCC
T ss_pred HHHhcCCCCEEEEeCC---ccchHHHHHHhcCCcEEEEecC
Confidence 3444479999998763 2223344455568999998643
No 193
>3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.60A {Bacillus subtilis subsp} PDB: 3hxp_A
Probab=22.07 E-value=57 Score=28.12 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=24.5
Q ss_pred HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 56 DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
.++.+.+.+||+||..+. . .+..+.|.++ +|++++..+
T Consensus 63 n~E~i~~l~PDlIi~~~~-~---~~~~~~L~~~-~pvv~~~~~ 100 (279)
T 3g9q_A 63 SVEKVIDLNPDLIIVWTT-Q---GADIKKLEKI-APTVAVKYD 100 (279)
T ss_dssp CHHHHHTTCCSEEEEECC------CCHHHHHHH-SCEEEECTT
T ss_pred CHHHHhcCCCCEEEEcCC-C---HHHHHHHHhh-CCEEEEcCC
Confidence 345666789999998752 2 2334556665 699888754
No 194
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=22.07 E-value=2.1e+02 Score=20.02 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V~GNHD 100 (349)
.+.++.+...+||++++-=++.+ ...++++.+.+. ..|++++.++.+
T Consensus 34 ~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 83 (121)
T 2pl1_A 34 KEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARES 83 (121)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCC
T ss_pred HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 44556666678999888444433 346777777653 578888887766
No 195
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.85 E-value=90 Score=27.17 Aligned_cols=58 Identities=7% Similarity=-0.006 Sum_probs=36.7
Q ss_pred ccEEEEEeCCCCCcC-hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 38 VVRIVIVGDVHDDWD-LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 38 ~mril~iSDlH~~~~-~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
.+++++.. .+.+.. ....++.+...++|.||+.+--.+.....++.+.+.++|++.+-
T Consensus 33 g~~~~~~~-~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 33 GYKTDLQY-ADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYD 91 (330)
T ss_dssp TCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEES
T ss_pred CCEEEEee-CCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEEC
Confidence 45665554 333322 13455666667899999987443344567777877789988774
No 196
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=21.63 E-value=82 Score=26.61 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=27.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHH-HHHcCCCCEEEEc
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQ-SVAELEFPKAVIL 96 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~-~l~~l~~Pi~~V~ 96 (349)
...++.+...++|.||+.+ . ..+.++ .+.+.++|++.+-
T Consensus 54 ~~~~~~l~~~~~dgiIi~~--~--~~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 54 QGYLATFVSHNCTGMISTA--F--NENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHTTCSEEEECG--G--GHHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHhCCCCEEEEec--C--ChHHHHHHHHcCCCCEEEEe
Confidence 3466667778999999988 2 245677 7777789977653
No 197
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.59 E-value=1e+02 Score=27.04 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=34.2
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHc-CCCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAE-LEFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~-l~~Pi~~V~GNHD 100 (349)
...+..++..+.-+||+++|... +....+..+.. .++|++++.++-+
T Consensus 141 keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~e 189 (266)
T 2zkr_f 141 NTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKAR 189 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 56778888889999999999976 33444544433 3799888876655
No 198
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=21.32 E-value=94 Score=27.29 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=24.8
Q ss_pred HHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEc
Q 018902 58 KALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVIL 96 (349)
Q Consensus 58 ~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~ 96 (349)
+.|.+.+||+||..+.. ..+..+.|.++. |++++.
T Consensus 90 E~I~~l~PDLIi~~~~~---~~~~~~~L~~~g-p~v~~~ 124 (311)
T 2wi8_A 90 EKILEMKPDVILASTKF---PEKTLQKISTAG-TTIPVS 124 (311)
T ss_dssp HHHHHHCCSEEEEETTS---CHHHHHHHHTTS-CEEEEC
T ss_pred HHHHhCCCCEEEEcCcc---CHHHHHHHHhhC-CEEEee
Confidence 34445799999976542 356788888876 888774
No 199
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=21.24 E-value=86 Score=22.83 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=30.3
Q ss_pred HHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEEcCCCCC
Q 018902 56 DSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVILGNHDS 101 (349)
Q Consensus 56 ~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V~GNHD~ 101 (349)
.++.+...+||+||+-=++.+ ...++++.+.+. ..|++++-++.|.
T Consensus 38 a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 86 (134)
T 3f6c_A 38 AVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDH 86 (134)
T ss_dssp HHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---
T ss_pred HHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCCh
Confidence 445555568999999777765 356777777654 4678888777664
No 200
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=21.24 E-value=1.6e+02 Score=24.79 Aligned_cols=43 Identities=21% Similarity=0.111 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
...++.+...++|.||+.+--.+ .+.++.+.+.++|++++-..
T Consensus 59 ~~~~~~~~~~~vdgiIi~~~~~~--~~~~~~l~~~~iPvV~~~~~ 101 (292)
T 3k4h_A 59 NGVVKMVQGRQIGGIILLYSREN--DRIIQYLHEQNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHTTCCCEEEESCCBTT--CHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCC--hHHHHHHHHCCCCEEEECCC
Confidence 34566677789999999874333 25677777778998877443
No 201
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=21.05 E-value=3.3e+02 Score=23.10 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=45.6
Q ss_pred CccEEEEEeCCCCCcChHHHHHHhhCCCCCEEEEcCCCCCC-----cHHHHHHHHcCCCCEEEEcCCCC
Q 018902 37 SVVRIVIVGDVHDDWDLQEDSKALQLLKPDLVLFTGDFGNE-----NVEIVQSVAELEFPKAVILGNHD 100 (349)
Q Consensus 37 ~~mril~iSDlH~~~~~~~~~~~i~~~~pD~vI~~GDl~~~-----~~~~l~~l~~l~~Pi~~V~GNHD 100 (349)
+..+++..+|.-.... .+.++.+.+...|+|.+.| ++. ..+.++.+++..+|++.-+++.+
T Consensus 7 ~~~~~it~gDP~~~~t-~~~~~~l~~~GaD~IelG~--S~g~t~~~~~~~v~~ir~~~~Pivl~~y~~n 72 (234)
T 2f6u_A 7 RKWRHITKLDPDRTNT-DEIIKAVADSGTDAVMISG--TQNVTYEKARTLIEKVSQYGLPIVVEPSDPS 72 (234)
T ss_dssp GGCCEEEEECTTSCCC-HHHHHHHHTTTCSEEEECC--CTTCCHHHHHHHHHHHTTSCCCEEECCSSCC
T ss_pred CcceEEEeeCCCcccc-HHHHHHHHHcCCCEEEECC--CCCCCHHHHHHHHHHhcCCCCCEEEecCCcc
Confidence 4467899999887766 4567777788999999998 332 24566666666799999999854
No 202
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.91 E-value=1.8e+02 Score=25.85 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=29.0
Q ss_pred hHHHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 53 LQEDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 53 ~~~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
....++.+...++|.||+++--. ..+.++.+.+.++|++.+
T Consensus 117 ~~~~~~~l~~~~vdGiIi~~~~~--~~~~~~~l~~~~iPvV~i 157 (366)
T 3h5t_A 117 HVSAQQLVNNAAVDGVVIYSVAK--GDPHIDAIRARGLPAVIA 157 (366)
T ss_dssp HHHHHHHHHTCCCSCEEEESCCT--TCHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEecCCC--ChHHHHHHHHCCCCEEEE
Confidence 45677777788999999887522 235566666668998876
No 203
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.88 E-value=1.4e+02 Score=25.05 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=22.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHcCCCCEE--------------EEcCCCCC
Q 018902 64 KPDLVLFTGDFGNENVEIVQSVAELEFPKA--------------VILGNHDS 101 (349)
Q Consensus 64 ~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~--------------~V~GNHD~ 101 (349)
.||+++++ |--.+ ...+++-+.+++|++ .||||.|-
T Consensus 111 ~Pdllvv~-Dp~~d-~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Ndds 160 (202)
T 3j20_B 111 EPDVLIVT-DPRAD-HQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKG 160 (202)
T ss_dssp CCSEEEES-CTTTS-HHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCCSS
T ss_pred CCCeEEEe-CCccc-hHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCCCc
Confidence 78988888 43333 344444445566654 67888774
No 204
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=20.87 E-value=1.3e+02 Score=25.94 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=29.3
Q ss_pred HHHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEEcCC
Q 018902 55 EDSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVILGN 98 (349)
Q Consensus 55 ~~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V~GN 98 (349)
..++.+...++|.||+.+--.+. +.++.+.+.++|++.+-..
T Consensus 74 ~~~~~l~~~~vdgiIi~~~~~~~--~~~~~l~~~~iPvV~i~~~ 115 (305)
T 3huu_A 74 EVKTMIQSKSVDGFILLYSLKDD--PIEHLLNEFKVPYLIVGKS 115 (305)
T ss_dssp HHHHHHHTTCCSEEEESSCBTTC--HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHhCCCCEEEEeCCcCCc--HHHHHHHHcCCCEEEECCC
Confidence 35666667899999998743332 5677777778998877443
No 205
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=20.49 E-value=2.3e+02 Score=21.46 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=4.1
Q ss_pred CCCEEEEcC
Q 018902 89 EFPKAVILG 97 (349)
Q Consensus 89 ~~Pi~~V~G 97 (349)
++|+++|+.
T Consensus 151 ~~pVlvv~~ 159 (162)
T 1mjh_A 151 NKPVLVVKR 159 (162)
T ss_dssp CSCEEEECC
T ss_pred CCCEEEEeC
Confidence 444444443
No 206
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=20.40 E-value=1.8e+02 Score=20.94 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=33.0
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC--CCCEEEEcCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL--EFPKAVILGNHDS 101 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l--~~Pi~~V~GNHD~ 101 (349)
.+.++.+...+||+||+-=++.+ ...++++.+.+. ..|++++.++.+.
T Consensus 37 ~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (136)
T 1mvo_A 37 EEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEE 87 (136)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCC
T ss_pred HHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCH
Confidence 44555555668999988655644 356777777654 4788888887764
No 207
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=20.24 E-value=92 Score=22.17 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=31.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCCC-C-CcHHHHHHHHcC----CCCEEEEcCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFG-N-ENVEIVQSVAEL----EFPKAVILGNHD 100 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~-~-~~~~~l~~l~~l----~~Pi~~V~GNHD 100 (349)
.+.++.+...+||+||+--++. + ...++++.+.+. .+|++++ +..+
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~ 90 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPD 90 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGG
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCC
Confidence 4455556666899999876665 4 346777777654 5788888 6555
No 208
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=20.18 E-value=2.2e+02 Score=24.13 Aligned_cols=55 Identities=9% Similarity=-0.031 Sum_probs=34.1
Q ss_pred ccEEEEEeCCCCCcCh-HH---HHHHhhCCCCCEEEEcCCCCCCcHHHHHHHHcCCCCEEEE
Q 018902 38 VVRIVIVGDVHDDWDL-QE---DSKALQLLKPDLVLFTGDFGNENVEIVQSVAELEFPKAVI 95 (349)
Q Consensus 38 ~mril~iSDlH~~~~~-~~---~~~~i~~~~pD~vI~~GDl~~~~~~~l~~l~~l~~Pi~~V 95 (349)
.+++++ .+...+... .+ .++.+...++|.||+.+--.+ .+.++.+.+.++|++.+
T Consensus 38 g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~l~~~~iPvV~~ 96 (290)
T 2rgy_A 38 HRHVVV-ATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--DEDLDELHRMHPKMVFL 96 (290)
T ss_dssp TCEEEE-ECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--HHHHHHHHHHCSSEEEE
T ss_pred CCEEEE-EeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--HHHHHHHhhcCCCEEEE
Confidence 355554 344443332 34 666677789999999874333 35566666568898776
No 209
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.08 E-value=1.1e+02 Score=22.41 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC----CCCEEEEcCCCCCC
Q 018902 54 QEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL----EFPKAVILGNHDSW 102 (349)
Q Consensus 54 ~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l----~~Pi~~V~GNHD~~ 102 (349)
.+.++.+...+||+||+-=++.+ ...++++.+.+. .+|++++.++.|..
T Consensus 36 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 89 (140)
T 3n53_A 36 KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKE 89 (140)
T ss_dssp HHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHH
Confidence 45566666678999988766654 245667777653 57899998887753
No 210
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=20.04 E-value=1.5e+02 Score=22.09 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=40.4
Q ss_pred CCccEEEEEeCCCCC------------c------ChHHHHHHhhCCCCCEEEEcCCCCC-CcHHHHHHHHcC------CC
Q 018902 36 ASVVRIVIVGDVHDD------------W------DLQEDSKALQLLKPDLVLFTGDFGN-ENVEIVQSVAEL------EF 90 (349)
Q Consensus 36 ~~~mril~iSDlH~~------------~------~~~~~~~~i~~~~pD~vI~~GDl~~-~~~~~l~~l~~l------~~ 90 (349)
...|||+++-|--.. + ..++.++.+...+||+||+-=++-+ ...++++.+.+. .+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~ 91 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYT 91 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCC
Confidence 345889988875331 0 1144566666778999998555544 346677666521 37
Q ss_pred CEEEEcCCCC
Q 018902 91 PKAVILGNHD 100 (349)
Q Consensus 91 Pi~~V~GNHD 100 (349)
|++++.++.+
T Consensus 92 pii~~s~~~~ 101 (143)
T 3m6m_D 92 PVVVLSADVT 101 (143)
T ss_dssp CEEEEESCCC
T ss_pred eEEEEeCCCC
Confidence 8999888776
Done!