BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018903
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ENH|A Chain A, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|B Chain B, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3EN9|A Chain A, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
pdb|3EN9|B Chain B, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
Length = 540
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 172/337 (51%), Positives = 225/337 (66%), Gaps = 12/337 (3%)
Query: 1 MKRMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLV 60
M MI LG EG+A K GVG+VT DG +L N + + PP QG PRE A HH E L+
Sbjct: 3 MDPMICLGLEGTAEKTGVGIVTSDGEVLFN-KTIMYKPPKQGINPREAADHHAETFPKLI 61
Query: 61 KSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMG 120
K A + + +EID + +++GPG+G L+V A V R LS KKPI+ VNHC+AHIE+G
Sbjct: 62 KEAFEV--VDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIG 119
Query: 121 RIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSP- 179
++ T AEDP+ LYVSGGNTQVIAY +YR+FGET+DIAVGNCLD+FAR + L P P
Sbjct: 120 KLTTEAEDPLTLYVSGGNTQVIAYVSKKYRVFGETLDIAVGNCLDQFARYVNL---PHPG 176
Query: 180 GYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQET 239
G IE+LA+KG+K +DLPY VKGMD++FSG+L TAA + + D+CYSLQE
Sbjct: 177 GPYIEELARKGKKLVDLPYTVKGMDIAFSGLL-----TAAMRAYDAGERLEDICYSLQEY 231
Query: 240 LFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNG 299
F+ML EITERA+AH +K +V++VGGV N RL+EM++ MC + + +C DNG
Sbjct: 232 AFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPKEFCGDNG 291
Query: 300 AMIAYTGLLAFAHGSSTPLEESTFTQRFRTDEVHAVW 336
AMIA+ GLL +G L+E+ +RTD V W
Sbjct: 292 AMIAWLGLLMHKNGRWMSLDETKIIPNYRTDMVEVNW 328
>pdb|2VWB|A Chain A, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis.
pdb|2VWB|B Chain B, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis
Length = 535
Score = 340 bits (872), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 171/334 (51%), Positives = 224/334 (67%), Gaps = 12/334 (3%)
Query: 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSA 63
MI LG EG+A K GVG+VT DG +L N + + PP QG PRE A HH E L+K A
Sbjct: 1 MICLGLEGTAEKTGVGIVTSDGEVLFN-KTIMYKPPKQGINPREAADHHAETFPKLIKEA 59
Query: 64 LKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIV 123
+ + +EID + +++GPG+G L+V A V R LS KKPI+ VNHC+AHIE+G++
Sbjct: 60 FEV--VDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLT 117
Query: 124 TGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSP-GYN 182
T AEDP+ LYVSGGNTQVIAY +YR+FGET+DIAVGNCLD+FAR + L P P G
Sbjct: 118 TEAEDPLTLYVSGGNTQVIAYVSKKYRVFGETLDIAVGNCLDQFARYVNL---PHPGGPY 174
Query: 183 IEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFA 242
IE+LA+KG+K +DLPY VKGMD++FSG+L TAA + + D+CYSLQE F+
Sbjct: 175 IEELARKGKKLVDLPYTVKGMDIAFSGLL-----TAAMRAYDAGERLEDICYSLQEYAFS 229
Query: 243 MLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMI 302
ML EITERA+AH +K +V++VGGV N RL+EM++ MC + + +C DNGAMI
Sbjct: 230 MLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPKEFCGDNGAMI 289
Query: 303 AYTGLLAFAHGSSTPLEESTFTQRFRTDEVHAVW 336
A+ GLL +G L+E+ +RTD V W
Sbjct: 290 AWLGLLMHKNGRWMSLDETKIIPNYRTDMVEVNW 323
>pdb|2IVN|A Chain A, Structure Of Up1 Protein
pdb|2IVO|A Chain A, Structure Of Up1 Protein
pdb|2IVO|B Chain B, Structure Of Up1 Protein
pdb|2IVO|C Chain C, Structure Of Up1 Protein
pdb|2IVO|D Chain D, Structure Of Up1 Protein
pdb|2IVP|A Chain A, Structure Of Up1 Protein
Length = 330
Score = 332 bits (852), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/333 (50%), Positives = 228/333 (68%), Gaps = 9/333 (2%)
Query: 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSA 63
M+ALG EG+A+ +G+G+V+ D +L+N T T G G P+E A+HH + PL++ A
Sbjct: 1 MLALGIEGTAHTLGIGIVSED-KVLANVFDTLTTEKG-GIHPKEAAEHHARLMKPLLRKA 58
Query: 64 LKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIV 123
L AG++ D+ID + +++GPG+G L+V A R L+ ++KPIV VNHC+AH+E+ ++
Sbjct: 59 LSEAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITKMF 118
Query: 124 TGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNI 183
G +DPV LYVSGGNTQV+A GRYR+FGET+DI +GN +D FAR L L P +
Sbjct: 119 -GVKDPVGLYVSGGNTQVLALEGGRYRVFGETLDIGIGNAIDVFARELGLGFPGGP--KV 175
Query: 184 EQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAM 243
E+LA+KGEK+++LPY VKGMD+SFSG+L+ A K + + DL YS QET FA
Sbjct: 176 EKLAEKGEKYIELPYAVKGMDLSFSGLLT----EAIRKYRSGKYRVEDLAYSFQETAFAA 231
Query: 244 LVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIA 303
LVE+TERA+AH +K +V++VGGV N RL+EM+R M +RG + F C DNGAMIA
Sbjct: 232 LVEVTERAVAHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIA 291
Query: 304 YTGLLAFAHGSSTPLEESTFTQRFRTDEVHAVW 336
YTGL + G S LEE+ Q+FRTDEV VW
Sbjct: 292 YTGLRMYKAGISFRLEETIVKQKFRTDEVEIVW 324
>pdb|3ENO|A Chain A, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
pdb|3ENO|B Chain B, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
Length = 334
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/337 (46%), Positives = 207/337 (61%), Gaps = 11/337 (3%)
Query: 1 MKRMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLV 60
M MI LG EG+A+ I G++ D S + + + P G P + A HH E + ++
Sbjct: 3 MDPMIVLGLEGTAHTISCGII--DESRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVI 60
Query: 61 KSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMG 120
AL+ A I+ +ID + ++ GPG+ L+V A R +S L KPI+ VNH + HIE+G
Sbjct: 61 SRALEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIG 120
Query: 121 RIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSP- 179
R VTGA DPV+LYVSGGNTQVIA+ GRYR+ GET+DI +GN +D+FAR + P P
Sbjct: 121 RRVTGAIDPVMLYVSGGNTQVIAHVNGRYRVLGETLDIGIGNMIDKFAREAGI---PFPG 177
Query: 180 GYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQET 239
G IE+LA KG K LDLPY VKGMD +FSGIL TAA + D+ YS+QET
Sbjct: 178 GPEIEKLAMKGTKLLDLPYSVKGMDTAFSGIL-----TAALQYLKTGQAIEDISYSIQET 232
Query: 240 LFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNG 299
FAMLVE+ ERA+ K ++L+ GGV N RL++M+ M E G R + TD YC+DNG
Sbjct: 233 AFAMLVEVLERALYVSGKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNG 292
Query: 300 AMIAYTGLLAFAHGSSTPLEESTFTQRFRTDEVHAVW 336
MIA LL + G +EE+ RFR DEV A W
Sbjct: 293 IMIAQAALLMYKSGVRMSVEETAVNPRFRIDEVDAPW 329
>pdb|3R6M|A Chain A, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
pdb|3R6M|B Chain B, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
pdb|3R6M|C Chain C, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
pdb|3R6M|D Chain D, Crystal Structure Of Vibrio Parahaemolyticus Yeaz
Length = 213
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 50 QHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVA 109
+ H + VLP+V LK AG+T ++D L + RGPG +++ + + L+ + P++
Sbjct: 33 RDHTKKVLPMVDEVLKEAGLTLQDLDALAFGRGPGSFTGVRIGIGIAQGLAFGAELPMIG 92
Query: 110 VNHCVAHIEMGRIVTGAEDPVV 131
V+ A + + GA D V
Sbjct: 93 VSTLAAMAQASYRLHGATDVAV 114
>pdb|2GEL|A Chain A, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEL|G Chain G, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEM|A Chain A, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
pdb|2GEM|B Chain B, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
Length = 231
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 45 PRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPG 84
PRE H + +LP+V+ L +G + +EID L + RGPG
Sbjct: 31 PRE----HTQRILPMVQEILAASGASLNEIDALAFGRGPG 66
>pdb|1OKJ|A Chain A, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|B Chain B, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|C Chain C, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|D Chain D, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
Length = 251
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 45 PRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWK 104
PRE H + +LP+V+ L T+G + +I+ L Y RGPG +++ + + L+ +
Sbjct: 51 PRE----HTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAE 106
Query: 105 KPIVAVN 111
P++ V+
Sbjct: 107 LPMIGVS 113
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 18/152 (11%)
Query: 159 AVGNCLDRFARVLTLSN----DPSPGYNIEQLAKKGEKFLDLPYVVKG----MDVSFSGI 210
+ G LD A +L ++ + P +E A KG+ L V+G ++ F I
Sbjct: 610 STGRVLDAIAVLLNVAYRRHYEGEPAXKLESFAFKGKNDLKFEVPVEGELIRVEELFQSI 669
Query: 211 LSYIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNE 270
L IE +PAD+ YS L K+V + GGV NE
Sbjct: 670 LEAIEG----------ASPADIAYSAHLALARAFAHTAVERAREFGVKNVALSGGVAYNE 719
Query: 271 RLQEMMRTMCSERGGRLFATDDRYCVDNGAMI 302
+ + +R + G T + DNG +
Sbjct: 720 LITKXIRKVVEANGLNFHVTTEVPRGDNGVNV 751
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 47 ETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKP 106
E + H +E + V+ AL+ AG+TP +ID + +G ++ AV + +L K+P
Sbjct: 276 ELSAHLVERTMGPVRQALQDAGLTPADIDKVIL-----VGGSTRIPAVQEAIKRELGKEP 330
Query: 107 IVAVN-----HCVAHIEMGRIVTGAEDPVVLYVS 135
VN A I+ G I +D V+L V+
Sbjct: 331 HKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVT 364
>pdb|3CHJ|A Chain A, Crystal Structure Of Alpha-14 Giardin
pdb|3CHK|A Chain A, Calcium Bound Structure Of Alpha-14 Giardin
pdb|3CHL|A Chain A, Crystal Structure Of Alpha-14 Giardin With Magnesium Bound
Length = 337
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 44 LPRETAQHHLEHVLPLVKSALKTAGITPDEI 74
+PR+T H LE L LV+ A++T G+ DE+
Sbjct: 158 IPRDT--HELEEDLVLVRKAIETKGVKKDEV 186
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 51 HHLEHVLPLVKSAL---KTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPI 107
H E ++ V+ L KTA +TP EI+ L +G LQ R LS L K+P
Sbjct: 480 HRTESIIKRVQHCLEVMKTAKVTPAEINTLLMNKG------LQELKTPARALS-LIKRPG 532
Query: 108 VAVNHCVAH 116
+++ + H
Sbjct: 533 ISLQDILEH 541
>pdb|1NSI|A Chain A, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|1NSI|B Chain B, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|1NSI|C Chain C, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|1NSI|D Chain D, Human Inducible Nitric Oxide Synthase, Zn-Bound, L-Arg
Complex
pdb|2NSI|A Chain A, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
pdb|2NSI|B Chain B, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
pdb|2NSI|C Chain C, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
pdb|2NSI|D Chain D, Human Inducible Nitric Oxide Synthase, Zn-free, Seitu
Complex
Length = 431
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 23 LDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG 82
LD + LS+PRH G G ++T H + +L + + +TP + TRG
Sbjct: 1 LDATPLSSPRHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSL-----TRG 55
Query: 83 P 83
P
Sbjct: 56 P 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,675,696
Number of Sequences: 62578
Number of extensions: 443092
Number of successful extensions: 1100
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 22
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)