Query 018903
Match_columns 349
No_of_seqs 202 out of 1632
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0533 QRI7 Metal-dependent p 100.0 6E-71 1.3E-75 512.3 35.7 329 4-337 1-342 (342)
2 PTZ00340 O-sialoglycoprotein e 100.0 4.1E-70 8.9E-75 516.3 36.7 331 4-337 1-344 (345)
3 PRK14878 UGMP family protein; 100.0 9.7E-68 2.1E-72 503.1 36.5 322 7-338 1-323 (323)
4 TIGR03722 arch_KAE1 universal 100.0 4.7E-67 1E-71 499.0 36.1 321 7-336 1-322 (322)
5 PRK09604 UGMP family protein; 100.0 1.2E-66 2.6E-71 497.4 36.8 323 4-334 1-331 (332)
6 PRK09605 bifunctional UGMP fam 100.0 9.5E-65 2.1E-69 514.7 37.8 330 4-342 1-331 (535)
7 TIGR03723 bact_gcp putative gl 100.0 1.6E-61 3.5E-66 458.5 34.1 302 6-311 1-314 (314)
8 TIGR00329 gcp_kae1 metallohydr 100.0 4.9E-61 1.1E-65 454.2 32.8 294 7-303 1-305 (305)
9 KOG2707 Predicted metalloprote 100.0 4.3E-55 9.3E-60 401.2 29.7 336 5-341 33-393 (405)
10 KOG2708 Predicted metalloprote 100.0 3.8E-53 8.2E-58 368.6 30.9 334 4-338 2-336 (336)
11 PF00814 Peptidase_M22: Glycop 100.0 2.3E-47 5.1E-52 354.3 25.9 265 26-304 1-268 (268)
12 COG2192 Predicted carbamoyl tr 100.0 7.4E-44 1.6E-48 346.3 20.9 312 4-334 1-362 (555)
13 TIGR00143 hypF [NiFe] hydrogen 100.0 2.2E-32 4.7E-37 282.4 32.1 272 6-307 364-709 (711)
14 COG0068 HypF Hydrogenase matur 100.0 7.7E-30 1.7E-34 253.6 26.7 273 5-308 398-745 (750)
15 PF02543 CmcH_NodU: Carbamoylt 99.9 2.9E-27 6.2E-32 227.7 16.5 207 118-330 1-234 (360)
16 TIGR03192 benz_CoA_bzdQ benzoy 99.9 5.7E-20 1.2E-24 170.3 27.9 235 3-289 31-269 (293)
17 COG1924 Activator of 2-hydroxy 99.9 5E-20 1.1E-24 172.8 24.4 240 1-292 132-375 (396)
18 TIGR03286 methan_mark_15 putat 99.9 2.9E-19 6.3E-24 171.4 27.9 241 2-292 142-388 (404)
19 TIGR02261 benz_CoA_red_D benzo 99.9 2.9E-19 6.3E-24 163.5 26.4 238 5-290 2-245 (262)
20 TIGR03725 bact_YeaZ universal 99.9 7.9E-21 1.7E-25 169.7 13.7 121 6-143 1-121 (202)
21 COG1214 Inactive homolog of me 99.8 1.6E-20 3.6E-25 169.2 11.9 125 4-143 1-126 (220)
22 TIGR00241 CoA_E_activ CoA-subs 99.8 2.6E-17 5.7E-22 151.6 24.7 243 6-306 2-247 (248)
23 PRK13317 pantothenate kinase; 99.7 9.8E-14 2.1E-18 129.3 28.1 250 4-306 2-270 (277)
24 TIGR02259 benz_CoA_red_A benzo 99.7 2.5E-14 5.5E-19 136.2 22.2 175 110-306 251-430 (432)
25 TIGR00555 panK_eukar pantothen 99.1 1.7E-07 3.8E-12 87.2 27.4 244 6-291 2-266 (279)
26 PF01869 BcrAD_BadFG: BadF/Bad 98.8 8.8E-07 1.9E-11 82.5 22.0 233 7-279 1-243 (271)
27 PRK03011 butyrate kinase; Prov 98.3 0.00025 5.3E-09 68.8 23.8 70 4-80 2-74 (358)
28 PRK15080 ethanolamine utilizat 98.2 0.0051 1.1E-07 57.3 28.1 237 3-306 23-265 (267)
29 COG2971 Predicted N-acetylgluc 98.0 0.003 6.5E-08 59.0 22.5 140 3-154 4-143 (301)
30 PRK00976 hypothetical protein; 97.7 0.013 2.7E-07 55.8 21.5 71 237-315 244-317 (326)
31 PF03702 UPF0075: Uncharacteri 97.7 0.028 6.1E-07 54.6 24.4 80 228-311 258-340 (364)
32 TIGR00744 ROK_glcA_fam ROK fam 97.6 0.034 7.4E-07 52.8 23.8 102 7-119 1-113 (318)
33 COG0554 GlpK Glycerol kinase [ 97.5 0.074 1.6E-06 52.8 24.4 85 227-318 371-457 (499)
34 TIGR02529 EutJ ethanolamine ut 97.5 0.051 1.1E-06 49.8 22.1 221 8-291 1-226 (239)
35 TIGR02707 butyr_kinase butyrat 97.4 0.13 2.8E-06 49.9 24.7 78 233-315 268-347 (351)
36 PRK09585 anmK anhydro-N-acetyl 97.4 0.076 1.7E-06 51.6 22.5 233 56-318 73-347 (365)
37 COG3426 Butyrate kinase [Energ 97.1 0.22 4.7E-06 46.3 25.0 276 5-316 4-351 (358)
38 COG1940 NagC Transcriptional r 97.1 0.23 5E-06 47.1 22.4 103 2-115 4-118 (314)
39 PRK09698 D-allose kinase; Prov 97.0 0.33 7.2E-06 45.7 23.3 101 5-118 5-119 (302)
40 PRK09557 fructokinase; Reviewe 97.0 0.34 7.4E-06 45.6 24.6 100 6-119 2-112 (301)
41 PLN02920 pantothenate kinase 1 96.9 0.49 1.1E-05 46.2 26.0 205 71-291 94-336 (398)
42 PRK13310 N-acetyl-D-glucosamin 96.8 0.45 9.7E-06 44.9 22.9 75 232-307 221-299 (303)
43 COG2377 Predicted molecular ch 96.8 0.26 5.7E-06 47.4 19.8 84 227-315 263-349 (371)
44 PF02782 FGGY_C: FGGY family o 96.8 0.021 4.5E-07 50.2 11.4 75 227-308 118-194 (198)
45 PF03630 Fumble: Fumble ; Int 96.6 0.72 1.6E-05 44.5 21.1 199 72-291 82-326 (341)
46 PTZ00009 heat shock 70 kDa pro 96.4 1.2 2.5E-05 47.0 23.5 53 256-313 332-384 (653)
47 PRK05082 N-acetylmannosamine k 96.4 0.86 1.9E-05 42.6 23.5 74 233-307 210-285 (291)
48 COG4020 Uncharacterized protei 96.3 0.82 1.8E-05 41.8 19.8 65 4-84 3-68 (332)
49 TIGR00016 ackA acetate kinase. 96.0 1.8 3.9E-05 42.6 23.1 31 256-286 327-358 (404)
50 PF00370 FGGY_N: FGGY family o 95.9 0.032 6.8E-07 51.0 7.9 76 5-81 1-77 (245)
51 PLN02902 pantothenate kinase 95.8 1.1 2.4E-05 47.9 19.3 204 73-291 145-385 (876)
52 PRK07157 acetate kinase; Provi 95.7 2.3 5E-05 41.8 21.4 31 256-286 320-351 (400)
53 PF00871 Acetate_kinase: Aceto 95.7 2 4.3E-05 42.3 19.9 76 5-81 1-89 (388)
54 TIGR01991 HscA Fe-S protein as 95.7 3.3 7.2E-05 43.1 23.0 65 244-314 295-364 (599)
55 PRK10331 L-fuculokinase; Provi 95.3 0.096 2.1E-06 52.8 9.4 86 228-320 359-446 (470)
56 COG1070 XylB Sugar (pentulose 95.2 0.11 2.3E-06 52.9 9.4 61 228-291 371-433 (502)
57 PRK00047 glpK glycerol kinase; 95.2 0.073 1.6E-06 54.0 8.2 85 227-318 372-458 (498)
58 TIGR01312 XylB D-xylulose kina 95.0 0.15 3.2E-06 51.3 9.9 86 227-319 359-446 (481)
59 PTZ00294 glycerol kinase-like 95.0 0.15 3.3E-06 51.8 9.9 87 227-320 375-463 (504)
60 smart00732 YqgFc Likely ribonu 94.9 0.25 5.5E-06 38.1 8.8 88 4-111 1-91 (99)
61 PTZ00294 glycerol kinase-like 94.8 0.15 3.2E-06 51.9 9.1 78 1-81 1-81 (504)
62 PRK00047 glpK glycerol kinase; 94.7 0.2 4.3E-06 50.9 9.9 75 5-81 6-82 (498)
63 PRK10939 autoinducer-2 (AI-2) 94.7 0.14 3.1E-06 52.2 8.9 84 228-318 379-464 (520)
64 PRK10640 rhaB rhamnulokinase; 94.6 0.28 6.1E-06 49.4 10.5 86 227-320 344-431 (471)
65 PRK12440 acetate kinase; Revie 94.5 5.3 0.00012 39.3 21.9 48 235-285 302-350 (397)
66 PRK15027 xylulokinase; Provisi 94.5 0.25 5.5E-06 49.9 10.0 86 228-320 357-444 (484)
67 PTZ00297 pantothenate kinase; 94.4 8.6 0.00019 44.2 22.6 65 227-291 1362-1430(1452)
68 TIGR01314 gntK_FGGY gluconate 94.4 0.23 5E-06 50.5 9.5 85 228-319 371-457 (505)
69 KOG2517 Ribulose kinase and re 94.4 0.26 5.6E-06 49.7 9.6 81 227-314 383-465 (516)
70 TIGR01311 glycerol_kin glycero 94.1 0.32 7E-06 49.3 9.8 86 227-319 368-455 (493)
71 TIGR02628 fuculo_kin_coli L-fu 93.8 0.35 7.6E-06 48.6 9.4 86 227-319 362-449 (465)
72 PLN02669 xylulokinase 93.7 0.47 1E-05 48.9 10.4 99 228-330 417-516 (556)
73 TIGR01315 5C_CHO_kinase FGGY-f 93.5 0.29 6.3E-06 50.3 8.3 81 230-318 416-498 (541)
74 KOG2201 Pantothenate kinase Pa 93.5 7 0.00015 37.3 16.5 142 129-278 175-326 (371)
75 PLN02295 glycerol kinase 93.4 0.32 6.9E-06 49.6 8.3 82 227-315 376-464 (512)
76 PRK10939 autoinducer-2 (AI-2) 93.3 0.47 1E-05 48.5 9.4 76 5-81 4-82 (520)
77 PRK00109 Holliday junction res 93.2 1 2.3E-05 37.5 9.8 93 1-113 1-98 (138)
78 TIGR01311 glycerol_kin glycero 93.0 0.41 8.9E-06 48.5 8.5 76 5-81 2-78 (493)
79 PF07318 DUF1464: Protein of u 93.0 9 0.0002 36.9 20.2 42 241-282 244-286 (343)
80 PRK01433 hscA chaperone protei 92.8 14 0.0003 38.6 22.2 53 255-313 307-359 (595)
81 TIGR01234 L-ribulokinase L-rib 92.8 0.41 8.8E-06 49.1 8.2 85 227-319 405-492 (536)
82 PRK00039 ruvC Holliday junctio 92.7 0.73 1.6E-05 39.7 8.3 23 4-26 2-24 (164)
83 PRK04123 ribulokinase; Provisi 92.7 0.57 1.2E-05 48.1 9.1 84 228-319 409-495 (548)
84 PRK04123 ribulokinase; Provisi 92.6 0.56 1.2E-05 48.2 8.9 76 5-81 4-87 (548)
85 TIGR01234 L-ribulokinase L-rib 92.5 0.87 1.9E-05 46.7 10.1 76 5-81 2-90 (536)
86 TIGR02627 rhamnulo_kin rhamnul 92.4 0.85 1.8E-05 45.7 9.8 86 227-320 356-443 (454)
87 PLN02295 glycerol kinase 92.0 1 2.2E-05 45.9 9.9 76 5-81 1-81 (512)
88 PF03652 UPF0081: Uncharacteri 91.8 0.44 9.6E-06 39.6 5.8 89 4-112 1-95 (135)
89 COG1070 XylB Sugar (pentulose 91.6 1.6 3.5E-05 44.4 10.8 80 1-81 1-82 (502)
90 TIGR01314 gntK_FGGY gluconate 91.6 0.8 1.7E-05 46.6 8.6 74 5-81 1-76 (505)
91 PRK15027 xylulokinase; Provisi 91.5 0.82 1.8E-05 46.2 8.5 73 6-81 2-75 (484)
92 COG0816 Predicted endonuclease 91.4 2.4 5.2E-05 35.6 9.7 89 4-113 2-97 (141)
93 TIGR01315 5C_CHO_kinase FGGY-f 91.4 1.4 3.1E-05 45.2 10.3 75 6-81 2-77 (541)
94 TIGR01312 XylB D-xylulose kina 90.7 0.66 1.4E-05 46.6 6.9 77 7-84 1-79 (481)
95 PRK13410 molecular chaperone D 90.5 26 0.00057 37.1 21.3 67 242-314 309-380 (668)
96 CHL00094 dnaK heat shock prote 90.3 26 0.00056 36.7 23.7 53 256-314 328-380 (621)
97 TIGR02628 fuculo_kin_coli L-fu 89.2 1.6 3.6E-05 43.8 8.3 74 5-81 2-78 (465)
98 PRK10331 L-fuculokinase; Provi 89.2 2 4.2E-05 43.3 8.9 74 5-81 3-79 (470)
99 PRK13311 N-acetyl-D-glucosamin 88.1 6.8 0.00015 35.9 11.1 99 6-118 2-111 (256)
100 PRK13411 molecular chaperone D 88.0 39 0.00084 35.7 20.2 66 244-314 310-380 (653)
101 PLN02669 xylulokinase 87.6 1.7 3.8E-05 44.8 7.4 77 4-81 8-97 (556)
102 PTZ00400 DnaK-type molecular c 87.1 44 0.00095 35.4 20.4 65 244-314 350-419 (663)
103 COG1069 AraB Ribulose kinase [ 86.6 1.9 4.1E-05 43.7 6.7 75 5-81 4-81 (544)
104 PRK00290 dnaK molecular chaper 86.0 48 0.001 34.7 22.3 66 243-314 308-378 (627)
105 COG0443 DnaK Molecular chapero 85.8 48 0.001 34.5 22.5 56 255-316 308-363 (579)
106 PLN03184 chloroplast Hsp70; Pr 85.3 55 0.0012 34.7 23.8 53 256-314 365-417 (673)
107 PF00480 ROK: ROK family; Int 84.9 18 0.00038 30.8 11.4 97 8-121 1-109 (179)
108 PRK13318 pantothenate kinase; 82.9 6.6 0.00014 36.2 8.3 67 6-85 2-69 (258)
109 PRK13321 pantothenate kinase; 81.9 6.7 0.00014 36.1 7.9 63 6-81 2-64 (256)
110 TIGR02350 prok_dnaK chaperone 79.7 81 0.0018 32.8 24.0 66 243-314 306-376 (595)
111 PRK05183 hscA chaperone protei 79.5 85 0.0018 32.9 23.3 65 244-314 311-380 (616)
112 PF05378 Hydant_A_N: Hydantoin 79.5 6.1 0.00013 34.3 6.4 62 7-80 2-63 (176)
113 PRK13928 rod shape-determining 79.0 14 0.0003 35.4 9.3 60 243-308 254-321 (336)
114 TIGR00904 mreB cell shape dete 77.7 15 0.00033 35.0 9.2 44 259-308 282-325 (333)
115 PF14574 DUF4445: Domain of un 77.5 6.7 0.00014 38.9 6.7 80 4-83 1-93 (412)
116 PRK13324 pantothenate kinase; 77.4 38 0.00082 31.4 11.3 67 6-84 2-69 (258)
117 PRK13929 rod-share determining 76.0 17 0.00036 34.9 8.9 59 244-308 258-324 (335)
118 PRK07058 acetate kinase; Provi 75.5 29 0.00063 34.2 10.4 73 235-310 300-390 (396)
119 PRK13927 rod shape-determining 74.9 16 0.00034 34.8 8.4 44 259-308 279-322 (334)
120 KOG1794 N-Acetylglucosamine ki 74.8 78 0.0017 30.0 24.3 71 5-81 4-75 (336)
121 cd00529 RuvC_resolvase Hollida 74.5 22 0.00047 30.0 8.3 21 5-25 1-21 (154)
122 PRK13331 pantothenate kinase; 74.0 14 0.0003 34.1 7.4 64 2-85 5-69 (251)
123 KOG0681 Actin-related protein 73.6 2.7 5.8E-05 42.5 2.7 84 244-329 539-636 (645)
124 PRK13930 rod shape-determining 73.3 22 0.00047 33.8 8.9 45 258-308 281-326 (335)
125 PF00012 HSP70: Hsp70 protein; 73.0 13 0.00028 38.4 7.8 53 255-313 327-379 (602)
126 PF11215 DUF3010: Protein of u 72.8 55 0.0012 27.3 10.5 98 4-112 1-102 (138)
127 PF02075 RuvC: Crossover junct 72.0 5.2 0.00011 33.8 3.8 20 6-25 1-20 (149)
128 COG1069 AraB Ribulose kinase [ 71.9 28 0.0006 35.5 9.4 57 256-319 431-487 (544)
129 TIGR02259 benz_CoA_red_A benzo 70.2 9.5 0.00021 37.6 5.6 28 5-32 3-30 (432)
130 PRK00180 acetate kinase A/prop 70.2 15 0.00033 36.3 7.1 32 255-286 322-354 (402)
131 PTZ00186 heat shock 70 kDa pre 70.1 1.5E+02 0.0033 31.3 21.4 65 244-314 336-405 (657)
132 PF14639 YqgF: Holliday-juncti 67.1 77 0.0017 26.7 10.5 30 4-33 5-38 (150)
133 PRK08304 stage V sporulation p 66.8 34 0.00073 32.9 8.4 51 54-111 58-108 (337)
134 COG0849 ftsA Cell division ATP 65.4 1.5E+02 0.0033 29.5 15.4 142 130-290 206-353 (418)
135 PF06723 MreB_Mbl: MreB/Mbl pr 63.5 27 0.00059 33.5 7.3 57 229-292 250-306 (326)
136 COG4820 EutJ Ethanolamine util 62.9 16 0.00035 32.6 5.0 61 237-300 207-268 (277)
137 COG4972 PilM Tfp pilus assembl 61.9 1.3E+02 0.0028 29.0 11.2 120 134-291 200-320 (354)
138 PRK12408 glucokinase; Provisio 61.8 47 0.001 31.8 8.7 99 1-120 12-126 (336)
139 KOG2531 Sugar (pentulose and h 60.0 35 0.00076 34.2 7.3 74 5-78 10-94 (545)
140 PF01890 CbiG_C: Cobalamin syn 60.0 16 0.00035 29.6 4.4 52 54-112 15-66 (121)
141 COG0282 ackA Acetate kinase [E 59.6 38 0.00082 33.2 7.4 75 4-78 1-87 (396)
142 TIGR01174 ftsA cell division p 58.7 1.8E+02 0.0039 28.1 15.7 24 258-281 315-339 (371)
143 TIGR00250 RNAse_H_YqgF RNAse H 58.7 62 0.0013 26.5 7.7 87 7-113 1-92 (130)
144 PRK09472 ftsA cell division pr 58.2 2E+02 0.0043 28.5 28.1 24 258-281 330-353 (420)
145 TIGR00228 ruvC crossover junct 58.1 35 0.00076 29.1 6.2 21 6-26 1-21 (156)
146 CHL00203 fabH 3-oxoacyl-acyl-c 57.6 18 0.00038 34.4 4.9 27 54-80 226-252 (326)
147 PF02801 Ketoacyl-synt_C: Beta 57.4 11 0.00024 30.1 3.0 30 55-85 26-55 (119)
148 PRK12408 glucokinase; Provisio 53.7 41 0.00089 32.3 6.7 72 232-307 247-330 (336)
149 PRK07027 cobalamin biosynthesi 53.0 24 0.00051 28.9 4.3 51 55-112 18-68 (126)
150 TIGR02845 spore_V_AD stage V s 52.7 86 0.0019 30.1 8.5 51 54-111 52-102 (327)
151 PLN02621 nicotinamidase 52.5 61 0.0013 28.4 7.2 56 253-311 123-178 (197)
152 cd00431 cysteine_hydrolases Cy 52.3 49 0.0011 27.5 6.3 43 253-298 106-148 (161)
153 PRK11678 putative chaperone; P 52.1 75 0.0016 31.9 8.5 73 228-307 370-444 (450)
154 COG1712 Predicted dinucleotide 50.7 59 0.0013 29.7 6.6 50 237-291 70-119 (255)
155 KOG0100 Molecular chaperones G 50.6 2.7E+02 0.0058 27.8 18.0 57 253-314 359-415 (663)
156 TIGR02627 rhamnulo_kin rhamnul 50.5 31 0.00068 34.5 5.6 70 7-81 1-75 (454)
157 PRK14101 bifunctional glucokin 50.0 92 0.002 32.7 9.2 96 3-119 18-122 (638)
158 PF10079 DUF2317: Uncharacteri 50.0 46 0.001 34.3 6.7 40 72-111 81-129 (542)
159 PLN02192 3-ketoacyl-CoA syntha 49.5 44 0.00095 34.2 6.4 37 49-85 172-209 (511)
160 PRK13320 pantothenate kinase; 49.2 95 0.0021 28.4 8.1 39 228-266 175-213 (244)
161 PF02593 dTMP_synthase: Thymid 48.6 45 0.00098 30.1 5.7 46 245-292 66-111 (217)
162 cd01013 isochorismatase Isocho 47.8 77 0.0017 27.9 7.1 55 253-310 138-192 (203)
163 PRK14101 bifunctional glucokin 47.7 39 0.00084 35.5 6.0 77 231-311 243-331 (638)
164 PRK13326 pantothenate kinase; 47.3 2E+02 0.0043 26.6 10.0 24 6-30 8-31 (262)
165 PRK12404 stage V sporulation p 46.1 98 0.0021 29.7 7.7 26 56-81 58-83 (334)
166 PLN02377 3-ketoacyl-CoA syntha 45.8 54 0.0012 33.5 6.4 35 50-84 169-204 (502)
167 cd01012 YcaC_related YcaC rela 44.6 99 0.0021 25.8 7.0 42 253-297 84-125 (157)
168 KOG3147 6-phosphogluconolacton 44.3 42 0.00092 30.8 4.8 65 240-305 24-94 (252)
169 PRK12879 3-oxoacyl-(acyl carri 43.9 40 0.00086 31.8 4.9 26 55-80 226-251 (325)
170 PRK08235 acetyl-CoA acetyltran 43.7 89 0.0019 30.7 7.5 28 54-81 28-55 (393)
171 PRK07108 acetyl-CoA acetyltran 43.6 38 0.00083 33.3 4.9 52 56-111 31-87 (392)
172 PF08392 FAE1_CUT1_RppA: FAE1/ 43.6 22 0.00048 33.5 3.0 32 51-82 81-113 (290)
173 COG1548 Predicted transcriptio 42.8 1.1E+02 0.0023 28.6 7.1 90 3-111 2-95 (330)
174 PRK07204 3-oxoacyl-(acyl carri 42.5 44 0.00096 31.6 5.0 25 56-80 232-256 (329)
175 PF00108 Thiolase_N: Thiolase, 41.9 42 0.00092 31.0 4.7 57 56-112 30-86 (264)
176 PRK11440 putative hydrolase; P 41.9 1E+02 0.0022 26.6 6.9 38 253-292 117-154 (188)
177 PRK12379 propionate/acetate ki 41.8 94 0.002 30.7 7.1 32 255-286 316-348 (396)
178 PRK06205 acetyl-CoA acetyltran 40.7 47 0.001 32.8 5.0 28 54-81 28-55 (404)
179 COG4820 EutJ Ethanolamine util 40.5 2.8E+02 0.006 25.0 9.1 28 4-31 29-56 (277)
180 PF04312 DUF460: Protein of un 40.4 43 0.00093 27.9 3.9 28 3-31 31-58 (138)
181 PLN03173 chalcone synthase; Pr 39.9 70 0.0015 31.5 6.1 45 53-106 276-320 (391)
182 PLN02326 3-oxoacyl-[acyl-carri 39.8 51 0.0011 32.1 5.1 26 55-80 281-306 (379)
183 PRK12397 propionate kinase; Re 39.5 1E+02 0.0022 30.5 7.0 56 255-310 320-393 (404)
184 PRK13301 putative L-aspartate 39.2 1.1E+02 0.0024 28.5 6.9 37 255-291 85-121 (267)
185 PF00022 Actin: Actin; InterP 39.1 92 0.002 30.1 6.8 34 258-291 312-350 (393)
186 PRK12880 3-oxoacyl-(acyl carri 39.0 1.5E+02 0.0032 28.6 8.1 86 245-336 245-338 (353)
187 PRK00292 glk glucokinase; Prov 39.0 1.1E+02 0.0024 28.7 7.2 94 5-120 3-108 (316)
188 PRK05963 3-oxoacyl-(acyl carri 38.9 55 0.0012 30.9 5.1 25 55-79 228-252 (326)
189 PF00857 Isochorismatase: Isoc 37.9 71 0.0015 26.8 5.2 38 253-292 108-145 (174)
190 PRK09258 3-oxoacyl-(acyl carri 37.6 1.5E+02 0.0033 28.0 7.9 32 55-86 64-96 (338)
191 PRK11617 endonuclease V; Provi 37.6 1.2E+02 0.0026 27.5 6.7 90 5-111 31-132 (224)
192 PRK12880 3-oxoacyl-(acyl carri 37.4 58 0.0013 31.5 5.0 25 56-80 244-268 (353)
193 PRK09258 3-oxoacyl-(acyl carri 37.3 64 0.0014 30.6 5.3 27 54-80 239-265 (338)
194 cd01015 CSHase N-carbamoylsarc 37.2 1.4E+02 0.0031 25.4 7.1 38 253-292 110-147 (179)
195 PLN02854 3-ketoacyl-CoA syntha 37.0 82 0.0018 32.3 6.1 34 51-84 186-220 (521)
196 cd06559 Endonuclease_V Endonuc 36.3 3.1E+02 0.0067 24.5 9.1 95 4-111 26-128 (208)
197 PF02803 Thiolase_C: Thiolase, 36.3 56 0.0012 26.6 4.0 26 56-81 24-49 (123)
198 PF02797 Chal_sti_synt_C: Chal 36.2 83 0.0018 26.6 5.2 60 53-125 39-98 (151)
199 PF00195 Chal_sti_synt_N: Chal 36.1 78 0.0017 28.7 5.3 60 58-118 106-165 (226)
200 COG4972 PilM Tfp pilus assembl 36.0 3E+02 0.0066 26.6 9.2 104 4-116 193-324 (354)
201 PRK13917 plasmid segregation p 35.6 4.1E+02 0.0088 25.5 13.2 43 130-172 188-231 (344)
202 PRK06519 3-oxoacyl-(acyl carri 35.6 47 0.001 32.8 4.1 60 55-119 281-340 (398)
203 COG2433 Uncharacterized conser 35.6 1.2E+02 0.0027 31.4 7.0 90 4-107 2-106 (652)
204 PLN03169 chalcone synthase fam 35.5 84 0.0018 30.9 5.8 46 54-106 281-326 (391)
205 cd00831 CHS_like Chalcone and 34.5 62 0.0013 31.1 4.7 28 57-84 90-117 (361)
206 PF11104 PilM_2: Type IV pilus 34.4 1.8E+02 0.004 27.7 8.0 31 256-289 274-304 (340)
207 PRK08963 fadI 3-ketoacyl-CoA t 34.3 89 0.0019 31.1 5.9 27 56-82 33-59 (428)
208 COG2433 Uncharacterized conser 34.2 2E+02 0.0043 30.0 8.1 27 4-31 244-270 (652)
209 PLN02932 3-ketoacyl-CoA syntha 33.9 1E+02 0.0022 31.4 6.1 32 51-82 146-178 (478)
210 PRK04262 hypothetical protein; 33.7 58 0.0013 31.2 4.3 27 54-80 209-235 (347)
211 PRK00292 glk glucokinase; Prov 33.3 1.1E+02 0.0024 28.7 6.2 72 232-307 229-312 (316)
212 cd00327 cond_enzymes Condensin 33.2 1.9E+02 0.0042 25.7 7.5 26 56-81 11-36 (254)
213 PRK05656 acetyl-CoA acetyltran 33.2 68 0.0015 31.5 4.8 27 55-81 29-55 (393)
214 cd01014 nicotinamidase_related 33.1 1.1E+02 0.0024 25.5 5.5 38 253-292 95-132 (155)
215 KOG2531 Sugar (pentulose and h 32.3 1.2E+02 0.0025 30.7 6.0 43 256-305 442-484 (545)
216 PRK06065 acetyl-CoA acetyltran 32.2 83 0.0018 31.0 5.2 56 53-111 30-88 (392)
217 cd00830 KAS_III Ketoacyl-acyl 32.1 74 0.0016 29.7 4.7 26 55-80 224-249 (320)
218 PRK10719 eutA reactivating fac 32.1 5.6E+02 0.012 26.0 11.4 29 53-81 65-95 (475)
219 PF04848 Pox_A22: Poxvirus A22 31.8 62 0.0013 27.2 3.6 24 4-27 1-24 (143)
220 PLN00415 3-ketoacyl-CoA syntha 31.8 86 0.0019 31.7 5.2 29 56-84 138-166 (466)
221 PTZ00331 alpha/beta hydrolase; 31.8 2.2E+02 0.0047 25.3 7.4 38 253-292 142-179 (212)
222 TIGR03614 RutB pyrimidine util 31.7 1.7E+02 0.0037 26.2 6.8 44 253-299 147-190 (226)
223 COG2183 Tex Transcriptional ac 31.6 2.4E+02 0.0053 30.3 8.6 98 2-119 328-429 (780)
224 PF01968 Hydantoinase_A: Hydan 31.6 1.3E+02 0.0029 28.2 6.3 73 226-305 206-282 (290)
225 cd00751 thiolase Thiolase are 31.3 65 0.0014 31.5 4.3 29 53-81 23-51 (386)
226 PTZ00280 Actin-related protein 31.1 59 0.0013 32.1 4.0 27 257-283 313-339 (414)
227 PTZ00452 actin; Provisional 30.7 54 0.0012 32.0 3.6 27 257-283 294-320 (375)
228 TIGR01930 AcCoA-C-Actrans acet 30.7 86 0.0019 30.7 5.0 29 53-81 22-50 (386)
229 cd00327 cond_enzymes Condensin 30.6 83 0.0018 28.1 4.6 27 54-80 145-171 (254)
230 PRK06366 acetyl-CoA acetyltran 30.6 79 0.0017 31.0 4.7 29 53-81 27-55 (388)
231 PF07066 DUF3882: Lactococcus 30.5 2.4E+02 0.0053 23.8 6.7 58 4-70 2-64 (159)
232 PRK05788 cobalamin biosynthesi 30.4 1E+02 0.0022 29.5 5.2 49 53-112 207-259 (315)
233 cd07229 Pat_TGL3_like Triacylg 30.4 3.2E+02 0.0068 27.0 8.8 41 244-285 70-110 (391)
234 PLN03168 chalcone synthase; Pr 30.3 97 0.0021 30.4 5.3 25 58-82 107-131 (389)
235 PF13941 MutL: MutL protein 30.1 4.5E+02 0.0098 26.6 10.0 94 6-111 2-108 (457)
236 PF05908 DUF867: Protein of un 29.8 70 0.0015 28.3 3.8 37 258-296 104-142 (194)
237 PRK06954 acetyl-CoA acetyltran 29.7 86 0.0019 30.8 4.9 27 55-81 34-60 (397)
238 PF14239 RRXRR: RRXRR protein 29.6 96 0.0021 27.0 4.5 28 5-33 52-79 (176)
239 PLN02666 5-oxoprolinase 29.3 1.7E+02 0.0036 33.7 7.4 61 227-292 454-519 (1275)
240 cd00827 init_cond_enzymes "ini 29.2 2.5E+02 0.0053 26.2 7.8 28 54-81 50-77 (324)
241 PRK09051 beta-ketothiolase; Pr 28.8 97 0.0021 30.5 5.0 29 53-81 28-56 (394)
242 PRK06840 hypothetical protein; 28.7 98 0.0021 29.4 5.0 25 56-80 239-263 (339)
243 PF08541 ACP_syn_III_C: 3-Oxoa 28.7 69 0.0015 23.9 3.2 18 64-81 1-18 (90)
244 PRK06633 acetyl-CoA acetyltran 28.7 96 0.0021 30.6 5.0 29 53-81 27-56 (392)
245 PTZ00107 hexokinase; Provision 28.5 3.4E+02 0.0075 27.4 8.9 22 5-26 75-96 (464)
246 PLN03170 chalcone synthase; Pr 28.5 1.4E+02 0.0029 29.6 6.0 30 53-84 280-309 (401)
247 PRK07204 3-oxoacyl-(acyl carri 28.5 1.7E+02 0.0037 27.6 6.5 27 56-82 56-82 (329)
248 PTZ00466 actin-like protein; P 28.4 66 0.0014 31.5 3.8 26 257-282 299-324 (380)
249 PF01548 DEDD_Tnp_IS110: Trans 28.4 91 0.002 25.4 4.1 28 6-33 1-28 (144)
250 PRK09352 3-oxoacyl-(acyl carri 27.8 1E+02 0.0022 28.8 4.9 26 55-80 220-245 (319)
251 TIGR03285 methan_mark_14 putat 27.7 1.8E+02 0.004 28.4 6.4 54 47-101 60-115 (445)
252 TIGR03855 NAD_NadX aspartate d 27.7 2.7E+02 0.0058 25.2 7.3 69 255-337 60-128 (229)
253 cd01011 nicotinamidase Nicotin 27.6 2.6E+02 0.0057 24.3 7.2 38 253-292 134-171 (196)
254 smart00268 ACTIN Actin. ACTIN 27.6 67 0.0015 31.0 3.7 26 258-283 293-318 (373)
255 PF02302 PTS_IIB: PTS system, 27.2 75 0.0016 23.5 3.1 31 260-290 4-34 (90)
256 TIGR01175 pilM type IV pilus a 27.1 1.8E+02 0.004 27.6 6.6 29 257-288 283-311 (348)
257 COG0332 FabH 3-oxoacyl-[acyl-c 26.9 57 0.0012 31.3 2.9 51 267-317 250-300 (323)
258 PTZ00186 heat shock 70 kDa pre 26.8 1.7E+02 0.0037 31.0 6.7 62 55-122 335-397 (657)
259 PLN03172 chalcone synthase fam 26.7 1.4E+02 0.0029 29.5 5.6 31 53-85 276-306 (393)
260 PLN03170 chalcone synthase; Pr 26.5 1E+02 0.0022 30.4 4.7 24 58-81 112-135 (401)
261 PRK07515 3-oxoacyl-(acyl carri 26.4 91 0.002 30.2 4.3 25 56-80 273-297 (372)
262 KOG1250 Threonine/serine dehyd 26.3 1.8E+02 0.004 28.8 6.2 60 58-125 203-263 (457)
263 PLN03169 chalcone synthase fam 26.1 88 0.0019 30.7 4.2 29 58-86 112-140 (391)
264 PRK12879 3-oxoacyl-(acyl carri 26.1 3.8E+02 0.0083 24.9 8.5 30 56-85 57-87 (325)
265 PRK08313 acetyl-CoA acetyltran 25.9 67 0.0015 31.4 3.3 33 54-86 26-58 (386)
266 cd00828 elong_cond_enzymes "el 25.9 1.2E+02 0.0026 29.6 5.1 29 55-84 275-303 (407)
267 PRK13304 L-aspartate dehydroge 25.9 2.5E+02 0.0055 25.8 7.0 37 255-291 84-120 (265)
268 cd00826 nondecarbox_cond_enzym 25.8 1.2E+02 0.0026 29.8 5.1 26 56-81 27-52 (393)
269 PRK11609 nicotinamidase/pyrazi 25.7 1.8E+02 0.0038 25.6 5.8 38 253-292 138-175 (212)
270 COG2441 Predicted butyrate kin 25.7 1.4E+02 0.0031 28.1 5.1 51 237-287 254-308 (374)
271 PF00117 GATase: Glutamine ami 25.6 1.4E+02 0.0031 25.5 5.1 40 71-111 40-79 (192)
272 PF10116 Host_attach: Protein 25.5 2.1E+02 0.0046 23.3 5.8 44 237-280 71-114 (138)
273 COG1335 PncA Amidases related 25.3 1.7E+02 0.0037 25.3 5.6 38 253-292 129-166 (205)
274 TIGR03281 methan_mark_12 putat 25.0 90 0.002 29.7 3.7 33 256-291 262-297 (326)
275 PTZ00004 actin-2; Provisional 24.9 74 0.0016 31.0 3.4 26 257-282 297-322 (378)
276 cd00012 ACTIN Actin; An ubiqui 24.7 81 0.0018 30.4 3.7 26 257-282 290-315 (371)
277 cd00830 KAS_III Ketoacyl-acyl 24.7 1.5E+02 0.0033 27.6 5.4 26 56-81 54-79 (320)
278 COG3734 DgoK 2-keto-3-deoxy-ga 24.7 1.1E+02 0.0024 28.8 4.2 32 1-32 2-33 (306)
279 TIGR01198 pgl 6-phosphoglucono 24.6 2.8E+02 0.0061 25.0 7.0 38 239-276 11-48 (233)
280 PRK08131 acetyl-CoA acetyltran 24.6 1.6E+02 0.0034 29.1 5.7 27 55-81 29-55 (401)
281 PF01182 Glucosamine_iso: Gluc 24.6 2E+02 0.0043 25.2 5.8 67 238-304 3-74 (199)
282 cd01400 6PGL 6PGL: 6-Phosphogl 24.5 1.1E+02 0.0023 27.4 4.1 37 238-274 5-41 (219)
283 PLN02362 hexokinase 24.3 4.9E+02 0.011 26.7 9.2 21 5-25 96-116 (509)
284 TIGR00748 HMG_CoA_syn_Arc hydr 24.2 1.1E+02 0.0025 29.2 4.5 28 54-81 52-79 (345)
285 KOG1391 Acetyl-CoA acetyltrans 24.0 82 0.0018 29.3 3.2 26 56-81 295-320 (396)
286 PLN03173 chalcone synthase; Pr 23.9 1.5E+02 0.0033 29.1 5.4 24 58-81 108-131 (391)
287 TIGR00748 HMG_CoA_syn_Arc hydr 23.9 1.5E+02 0.0033 28.4 5.3 29 52-80 206-234 (345)
288 PLN02287 3-ketoacyl-CoA thiola 23.7 1.3E+02 0.0028 30.3 4.9 28 54-81 73-100 (452)
289 PRK09052 acetyl-CoA acetyltran 23.6 2.1E+02 0.0044 28.3 6.2 27 55-81 34-61 (399)
290 PLN03172 chalcone synthase fam 23.4 2.3E+02 0.005 27.8 6.6 24 58-81 108-131 (393)
291 PLN03171 chalcone synthase-lik 23.4 1.4E+02 0.003 29.4 5.0 29 58-86 114-143 (399)
292 PRK07850 acetyl-CoA acetyltran 23.3 1.5E+02 0.0032 29.1 5.2 26 56-81 30-55 (387)
293 PTZ00281 actin; Provisional 23.3 72 0.0016 31.1 3.0 27 257-283 295-321 (376)
294 cd00831 CHS_like Chalcone and 23.3 1.6E+02 0.0035 28.3 5.4 27 54-80 259-287 (361)
295 cd05565 PTS_IIB_lactose PTS_II 23.2 99 0.0022 24.1 3.2 31 260-291 5-35 (99)
296 PRK06816 3-oxoacyl-(acyl carri 23.2 1.4E+02 0.003 29.0 5.0 38 57-99 275-312 (378)
297 TIGR00747 fabH 3-oxoacyl-(acyl 23.1 1.4E+02 0.0029 28.0 4.8 42 56-106 221-262 (318)
298 PRK08170 acetyl-CoA acetyltran 23.0 1.5E+02 0.0033 29.4 5.2 26 55-80 30-55 (426)
299 PLN02644 acetyl-CoA C-acetyltr 22.8 1.5E+02 0.0032 29.1 5.1 28 53-80 26-53 (394)
300 PF05014 Nuc_deoxyrib_tr: Nucl 22.7 1.3E+02 0.0029 23.5 3.9 20 272-291 15-34 (113)
301 PF06491 Disulph_isomer: Disul 22.6 2.5E+02 0.0054 23.3 5.4 20 14-34 95-114 (136)
302 PF06406 StbA: StbA protein; 22.2 1.9E+02 0.0042 27.3 5.6 23 56-78 78-100 (318)
303 PRK04262 hypothetical protein; 21.5 2E+02 0.0043 27.5 5.6 28 53-80 52-79 (347)
304 TIGR02826 RNR_activ_nrdG3 anae 21.4 2.8E+02 0.006 23.2 5.8 32 257-289 62-93 (147)
305 PRK13410 molecular chaperone D 21.1 2.1E+02 0.0045 30.4 6.0 61 54-120 309-370 (668)
306 smart00842 FtsA Cell division 21.1 4E+02 0.0086 22.8 7.0 66 6-81 1-74 (187)
307 PF00012 HSP70: Hsp70 protein; 21.0 9E+02 0.02 24.7 10.8 89 73-166 134-230 (602)
308 COG1515 Nfi Deoxyinosine 3'end 21.0 4.1E+02 0.009 23.8 6.9 96 5-113 30-132 (212)
309 PF00205 TPP_enzyme_M: Thiamin 21.0 1.4E+02 0.0031 24.0 4.0 35 257-291 12-46 (137)
310 cd01915 CODH Carbon monoxide d 20.6 1.2E+02 0.0025 31.9 3.9 74 256-330 454-541 (613)
311 PRK06147 3-oxoacyl-(acyl carri 20.6 2.2E+02 0.0047 27.4 5.7 27 54-80 234-260 (348)
312 cd00825 decarbox_cond_enzymes 20.4 1.8E+02 0.0039 27.1 5.0 27 54-80 205-231 (332)
313 PRK08947 fadA 3-ketoacyl-CoA t 20.2 2.2E+02 0.0047 27.9 5.7 27 57-83 32-59 (387)
314 KOG2517 Ribulose kinase and re 20.2 4.3E+02 0.0093 27.1 7.7 29 4-32 6-35 (516)
315 TIGR02446 FadI fatty oxidation 20.1 1.8E+02 0.0038 29.1 5.0 26 56-81 35-60 (430)
316 PF03309 Pan_kinase: Type III 20.1 3.4E+02 0.0073 23.8 6.4 64 6-84 1-65 (206)
317 TIGR00162 conserved hypothetic 20.1 4E+02 0.0086 23.3 6.7 28 237-268 32-59 (188)
318 PRK14691 3-oxoacyl-(acyl carri 20.1 1.3E+02 0.0027 29.1 3.9 30 54-84 206-235 (342)
319 cd00832 CLF Chain-length facto 20.0 2.1E+02 0.0046 28.1 5.5 30 54-84 270-299 (399)
No 1
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-71 Score=512.32 Aligned_cols=329 Identities=43% Similarity=0.715 Sum_probs=301.7
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeecc--CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYF--TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~--~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
|+||||||||+++++++++ ++.|++.+..+++ ++.++|++|+.+++.|.++++++|+++|+++|++++|||+||+|.
T Consensus 1 m~iLGIEtScDeT~vaIv~-~~~ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~ 79 (342)
T COG0533 1 MIILGIETSCDETGVAIVD-EEKILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTA 79 (342)
T ss_pred CeEEEEEcccccceeEEEe-ccChhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEec
Confidence 7899999999999999999 4459998888887 789999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCC-eEEEEeCCeeEEEEEeC-CcEEEEeecccch
Q 018903 82 GPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDP-VVLYVSGGNTQVIAYSE-GRYRIFGETIDIA 159 (349)
Q Consensus 82 gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p-~~l~i~gg~~~~~~~~~-g~~~~~~~~~~~S 159 (349)
|||+-.+|++|..+||+||..+++|+++|+|.++|+.++++..+...| ++|+++||||+++.+++ +++++++++.|++
T Consensus 80 gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~~~~~~p~v~LlVSGGHTqli~~~~~g~y~ilGeTlDdA 159 (342)
T COG0533 80 GPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLETGLAFPPVALLVSGGHTQLIAVRGIGRYEVLGETLDDA 159 (342)
T ss_pred CCCchhHHHHHHHHHHHHHHHhCCCEeecchHHHHHHHHHhccCCCCCcEEEEEecCceEEEEEcCCCcEEEEeeechhh
Confidence 999999999999999999999999999999999999999997763344 89999999999998866 9999999999999
Q ss_pred hhHHHHHHHhHcCCCCCCCch-hHHHHhhhhCCC-CCCCccc-cC--CceeechhHHHHHHHHHHHHcCCC---CCCHHH
Q 018903 160 VGNCLDRFARVLTLSNDPSPG-YNIEQLAKKGEK-FLDLPYV-VK--GMDVSFSGILSYIEATAAEKLNNN---ECTPAD 231 (349)
Q Consensus 160 ~Gr~~Dava~lLGl~~~~~eG-~~le~lA~~g~~-~~~~~~~-~~--~~~~~f~~l~~~~~~~~~~~~~~~---~~~~~d 231 (349)
+|+.||++|++|||+ ||| |.+|+||..|++ .+++|.. .+ +++|||||+++++.+.+++..++. ..+.+|
T Consensus 160 ~Gea~DKvAR~lGL~---yPGGp~Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~d 236 (342)
T COG0533 160 AGEAFDKVARLLGLG---YPGGPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKED 236 (342)
T ss_pred hhHHHHHHHHHhCCC---CCCcHHHHHHHhcCCCCceeCCccccCCCCcceehHhHHHHHHHHHHhcccccccchhhHHH
Confidence 999999999999998 888 899999999974 5777763 33 389999999999999888653211 244778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHH
Q 018903 232 LCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFA 311 (349)
Q Consensus 232 iA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~ 311 (349)
||++||+++.+.+++.+++++++++.++|+++|||++|+.||+++.+++...|+++|+||..+|+|||+||||+++.+|+
T Consensus 237 ia~sfQ~av~~~L~~kt~rAl~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaMIA~ag~~~~~ 316 (342)
T COG0533 237 IAASFQEAVFDMLVEKTERALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAMIAYAGLLRYK 316 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred cCCCC-CCcccccccCccCcccccccc
Q 018903 312 HGSST-PLEESTFTQRFRTDEVHAVWR 337 (349)
Q Consensus 312 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 337 (349)
+|.+. ++ ++.+.|||+.||+..+|+
T Consensus 317 ~g~~~~~~-~~~~~~r~~~~~~~~~~~ 342 (342)
T COG0533 317 AGRFISPL-DVNVRPRWRLDEVDAPWR 342 (342)
T ss_pred cCCCCCCc-ccccCCCCchhhcccccC
Confidence 99984 56 689999999999999996
No 2
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=100.00 E-value=4.1e-70 Score=516.32 Aligned_cols=331 Identities=72% Similarity=1.189 Sum_probs=302.5
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCC-CCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQ-GFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~-g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
|+||||||||+++|+||++++|++++..+.++. ..++ |++|+.+.+.|.++++++++++|+++|++++|||+|+||.|
T Consensus 1 ~~iLgIETScd~tsvAl~~~~~~il~~~~~sq~-~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~G 79 (345)
T PTZ00340 1 FLALGIEGSANKLGVGIVTSDGEILSNVRETYI-TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKG 79 (345)
T ss_pred CeEEEEEccchhhEEEEEECCCcEEEEEEeecc-ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 789999999999999999856789988877765 4555 99999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEEEeecccchhhH
Q 018903 83 PGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGN 162 (349)
Q Consensus 83 Pg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~~~S~Gr 162 (349)
||+||+||+|.++||+||..+++|+++|+|.++|++++++.++.++|++|+++||||+++..+.+++++++++.|+++|+
T Consensus 80 PGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a~~l~~~~~~Pl~LlVSGGhT~l~~~~~~~~~ilG~T~Dda~Ge 159 (345)
T PTZ00340 80 PGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRLVTGAENPVVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGN 159 (345)
T ss_pred CCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHHHhhccCCCCCeEEEEeCCceEEEEecCCeEEEEEeecccchhH
Confidence 99999999999999999999999999999999999999998887888999999999998876668899999999999999
Q ss_pred HHHHHHhHcCCCCCCCc--hhHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcC-----C---C--CCCHH
Q 018903 163 CLDRFARVLTLSNDPSP--GYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLN-----N---N--ECTPA 230 (349)
Q Consensus 163 ~~Dava~lLGl~~~~~e--G~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~-----~---~--~~~~~ 230 (349)
.||++|++||++. || |+.||.+|..|++.+++|...++++|||||+++++++++.+.+. + + +....
T Consensus 160 a~DKvar~LGL~~--yp~gGp~iE~lA~~g~~~~~~P~~~~~~dfSFSGlkTav~~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (345)
T PTZ00340 160 CLDRFARLLNLSN--DPAPGYNIEQLAKKGKNLIELPYVVKGMDMSFSGILTYIEDLVEHPQFKDVVSEIVPPEEEFFTD 237 (345)
T ss_pred HHHHHHHHhCCCC--CCCChHHHHHHHhhCCCccCCCCCCCCCcEECccHHHHHHHHHHhccccccccccccccccchHH
Confidence 9999999999974 56 59999999888766777776677899999999999998875321 0 0 22467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHH
Q 018903 231 DLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAF 310 (349)
Q Consensus 231 diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~ 310 (349)
|||++||+++.++|++++.++.++++.++|+++|||++|++||++|++.++++++++|+||+.+|+|||+||||+|++++
T Consensus 238 diaasfq~~v~~~L~~k~~~a~~~~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~~ctDNaaMIa~~g~~~~ 317 (345)
T PTZ00340 238 DLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERYCIDNGAMIAYAGLLEY 317 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HcCCCCCCcccccccCccCcccccccc
Q 018903 311 AHGSSTPLEESTFTQRFRTDEVHAVWR 337 (349)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (349)
+.|.+.++++..+.|+|+.+++.-+|+
T Consensus 318 ~~g~~~~~~~~~~~~~~~l~~~~~~~~ 344 (345)
T PTZ00340 318 LSGGFTPLKDATVTQRFRTDEVDVTWR 344 (345)
T ss_pred HcCCCCChhhcccccCCccceeeeecC
Confidence 999988886577899999999999996
No 3
>PRK14878 UGMP family protein; Provisional
Probab=100.00 E-value=9.7e-68 Score=503.15 Aligned_cols=322 Identities=54% Similarity=0.927 Sum_probs=293.0
Q ss_pred EEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCC
Q 018903 7 LGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMG 86 (349)
Q Consensus 7 LgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~ 86 (349)
|||||||+++|+||++ +++++++.+.++ ++.++|+.|..+.+.|.+.+++++++||+++|++++|||.|+++.|||+|
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~-~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~ 78 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTY-VPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLG 78 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEec-ccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcc
Confidence 7999999999999999 888888776544 67788999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEEEeecccchhhHHHHH
Q 018903 87 APLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDR 166 (349)
Q Consensus 87 t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~~~S~Gr~~Da 166 (349)
|++|+|.++||.|+..+++|+++|+||++|++++++.+++++|++|++||++++++..+.+++++++.+.++|+||+||+
T Consensus 79 ~~lrvg~~~Ak~la~~~~~p~~~v~h~~~Ha~sa~~~s~~~~~l~l~vsGg~t~i~~~~~~~~~~~~~t~d~s~Gr~fD~ 158 (323)
T PRK14878 79 PALRVGATAARALALKYNKPLVPVNHCIAHIEIGRLTTGAKDPVVLYVSGGNTQVLAFRGGRYRVFGETLDIAIGNALDT 158 (323)
T ss_pred cchHHHHHHHHHHHHHhCCCccccchHHHHHHhhhhcCCCCCCEEEEEEcCCeEEEEEeCCeEEEeeeecCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777788999999999999999999
Q ss_pred HHhHcCCCCCCCch-hHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 018903 167 FARVLTLSNDPSPG-YNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAMLV 245 (349)
Q Consensus 167 va~lLGl~~~~~eG-~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~ 245 (349)
+|++||++ ++| +.+|++|..+++.+++|...++.+++|+|+++++.+.+.+ ..+..|||++||+++++.++
T Consensus 159 vA~~LGl~---~~G~~~lE~~a~~~~~~~~~p~~~~~~~~~fsgl~~~v~~~i~~-----~~~~~diAa~fq~~l~~~l~ 230 (323)
T PRK14878 159 FAREVGLA---PPGGPAIEKCAEKGEKYIELPYVVKGQDLSFSGLLTAALRLYKG-----KERLEDVCYSLRETAFAMLV 230 (323)
T ss_pred HHHHcCCC---CCChhHHHHHHhhCCCcCcCCccCcCCCCcchHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHH
Confidence 99999998 446 7899999876553344433345679999999888776653 24578999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCCCCCccccccc
Q 018903 246 EITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSSTPLEESTFTQ 325 (349)
Q Consensus 246 ~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~~~~~~~~~~ 325 (349)
++++++.+++++++|||+||||+|++|++++.+.+++.++++|+||+.||||||+||||++++.++.+.+.++++.+++|
T Consensus 231 ~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimIA~~g~~~~~~~~~~~~~~~~~~~ 310 (323)
T PRK14878 231 EVTERALAHTGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMIAYTGLLAYKHGVTIPPEESFVRQ 310 (323)
T ss_pred HHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHHHHHHHHHHHcCCCCChhhccccC
Confidence 99999999999999999999999999999999999888999999999999999999999999999998877787788999
Q ss_pred CccCccccccccc
Q 018903 326 RFRTDEVHAVWRE 338 (349)
Q Consensus 326 ~~~~~~~~~~~~~ 338 (349)
+|++++++-+||.
T Consensus 311 ~~~~~~~~~~~~~ 323 (323)
T PRK14878 311 RWRLDEVDVPWRN 323 (323)
T ss_pred CCccccccCccCC
Confidence 9999999999983
No 4
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=100.00 E-value=4.7e-67 Score=498.96 Aligned_cols=321 Identities=55% Similarity=0.958 Sum_probs=288.5
Q ss_pred EEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCC
Q 018903 7 LGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMG 86 (349)
Q Consensus 7 LgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~ 86 (349)
|||||||+++|+||++++++|++..+.++ ++.++|+.|..+.+.|.+.+++++++||+++|++++|||.|+++.|||++
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~-~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~ 79 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTY-VPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLG 79 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeec-ccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchH
Confidence 79999999999999985677888766554 56788999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEEEeecccchhhHHHHH
Q 018903 87 APLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDR 166 (349)
Q Consensus 87 t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~~~S~Gr~~Da 166 (349)
|++|+|..+||.|+..+++|+++|+||+||++++++.++|++|++|++||++++++..+.+++++++.+.++|+||+||+
T Consensus 80 ~~l~vg~~~ak~la~~~~~p~~~v~h~~aHa~sa~~~s~~~~~lvL~vsGg~t~l~~~~~~~~~~l~~t~d~s~GrlfDa 159 (322)
T TIGR03722 80 PCLRVGATAARALALKLNKPLVGVNHCVAHIEIGRLTTGAKDPVVLYVSGGNTQVIAYRNGRYRVFGETLDIGLGNALDK 159 (322)
T ss_pred HhHHHHHHHHHHHHHHhCCCeechhhHHHHHHhhhccCCCCCCeEEEEeCCceEEEEEeCCeEEEEEEeccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777788999999999999999999
Q ss_pred HHhHcCCCCCCCch-hHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 018903 167 FARVLTLSNDPSPG-YNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAMLV 245 (349)
Q Consensus 167 va~lLGl~~~~~eG-~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~ 245 (349)
+|++||++. +| ++||.+|.+++..+++|....+.+++|+++++++.+.+.+ ..++.|||++||+++++.++
T Consensus 160 va~~LGl~~---~G~~~le~la~~~~~~~~~~~~~~~~~~~fs~l~~~~~~~~~~-----~~~~~diAasfq~~l~~~l~ 231 (322)
T TIGR03722 160 FAREVGLGH---PGGPKIEELAEKGKEYIELPYTVKGMDLSFSGLLTAALRAYKK-----GARLEDVCYSLQETAFAMLV 231 (322)
T ss_pred HHHHhCCCC---CChHHHHHHHhcCCCcccCCccCCCCcCchHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHH
Confidence 999999984 36 7899998877543334332334567899998887776653 24579999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCCCCCccccccc
Q 018903 246 EITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSSTPLEESTFTQ 325 (349)
Q Consensus 246 ~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~~~~~~~~~~ 325 (349)
++++++.+++++++||||||||+|++||++|.+.+.+.++++|+||+.||||||+||||++++.++.+++.++++.+++|
T Consensus 232 ~~a~~~~~~~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig~~g~~~~~~~~~~~~~~~~~~~ 311 (322)
T TIGR03722 232 EVTERALAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIAYTGLLMYKHGVTIPVEESRVRQ 311 (322)
T ss_pred HHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHHHHHHHHHHcCCCCChhhccccC
Confidence 99999999999999999999999999999999999888999999999999999999999999998788877787788999
Q ss_pred CccCccccccc
Q 018903 326 RFRTDEVHAVW 336 (349)
Q Consensus 326 ~~~~~~~~~~~ 336 (349)
+|+++++.-+|
T Consensus 312 ~~~~~~~~~~~ 322 (322)
T TIGR03722 312 RWRTDEVEVPW 322 (322)
T ss_pred CCccccccCCC
Confidence 99999988677
No 5
>PRK09604 UGMP family protein; Validated
Probab=100.00 E-value=1.2e-66 Score=497.42 Aligned_cols=323 Identities=34% Similarity=0.548 Sum_probs=291.5
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeecc--CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYF--TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~--~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
|+|||||||++++++||+++++++++..+.++. +++++|++|..+.+.|.+.|+++++++|++++++++|||+|+|+.
T Consensus 1 m~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~ 80 (332)
T PRK09604 1 MLILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTA 80 (332)
T ss_pred CeEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 789999999999999999943489988776653 688899999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCC-eEEEEeCCeeEEEEE-eCCcEEEEeecccch
Q 018903 82 GPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDP-VVLYVSGGNTQVIAY-SEGRYRIFGETIDIA 159 (349)
Q Consensus 82 gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p-~~l~i~gg~~~~~~~-~~g~~~~~~~~~~~S 159 (349)
|||+|||+|+|+.+||.|+..+++|+++|+||++||+++++.++|++| ++|++|||++.++.. +++++++++++.++|
T Consensus 81 GPG~~tglrvg~~~Ak~La~~~~ipl~~v~h~~~ha~~a~~~s~~~~~~lvl~vsGG~s~~~~~~~~~~~~~l~~t~d~s 160 (332)
T PRK09604 81 GPGLVGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFLEEEPEFPFLALLVSGGHTQLVLVKGIGDYELLGETLDDA 160 (332)
T ss_pred CCCcHHhHHHHHHHHHHHHHHhCCCEEeecCHHHHHHhhhhccCCCCCEEEEEecCCccEEEEEcCCCcEEEccccCCch
Confidence 999999999999999999999999999999999999999999999887 789999999887764 568999999899999
Q ss_pred hhHHHHHHHhHcCCCCCCCch-hHHHHhhhhCCC-CCCCcccc--CCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 018903 160 VGNCLDRFARVLTLSNDPSPG-YNIEQLAKKGEK-FLDLPYVV--KGMDVSFSGILSYIEATAAEKLNNNECTPADLCYS 235 (349)
Q Consensus 160 ~Gr~~Dava~lLGl~~~~~eG-~~le~lA~~g~~-~~~~~~~~--~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~ 235 (349)
+|.+||++|++|||. ++| +++|+||+||++ .+.++... ++++|+|+|+++.+.++++. ...+..+||++
T Consensus 161 lG~~yd~~t~~LG~~---~~~g~kvmgLA~~g~~~~~~~~~~~~~~~~~~sfsg~~~~~~~~~~~----~~~~~~~iA~s 233 (332)
T PRK09604 161 AGEAFDKVAKLLGLG---YPGGPAIDKLAKQGDPDAFKFPRPMDRPGLDFSFSGLKTAVLNTIEK----SEQTKADIAAS 233 (332)
T ss_pred hhHHHHHHHHHcCCC---CCCcHHHHHHHHhCCCCeEeCCccccCCCccEecCcHHHHHHHHHHh----cCCCHHHHHHH
Confidence 999999999999998 555 899999999975 34444333 56789999998887776553 13457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCC
Q 018903 236 LQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSS 315 (349)
Q Consensus 236 ~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~ 315 (349)
||+++++.++++++++.+++++++||++||||+|++|+++|.+.++++++++|+||+.||||||+||||++++.++.|.+
T Consensus 234 ~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g~~ 313 (332)
T PRK09604 234 FQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAGEF 313 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999988
Q ss_pred CCCcccccccCccCccccc
Q 018903 316 TPLEESTFTQRFRTDEVHA 334 (349)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~ 334 (349)
.+++ ..+.|||++|++.+
T Consensus 314 ~~~~-~~~~~~~~~~~~~~ 331 (332)
T PRK09604 314 SDLD-LNARPRWPLDELSA 331 (332)
T ss_pred CCCc-cccCCCCCcccccC
Confidence 7774 67999999997754
No 6
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=100.00 E-value=9.5e-65 Score=514.68 Aligned_cols=330 Identities=52% Similarity=0.936 Sum_probs=297.8
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCC
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGP 83 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gP 83 (349)
|+||||||||+++||||++++|+++++.+.+ .+..++|+.|+.+.+.|.+.++++|++||+++|++++|||+||||.||
T Consensus 1 m~il~iets~~~~s~a~~~~~~~~~~~~~~~-~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~gP 79 (535)
T PRK09605 1 MIVLGIEGTAWKTSAGIVDSDGDVLFNESDP-YKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGP 79 (535)
T ss_pred CEEEEEEccccceEEEEEeCCCcEEEEEEee-ccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCCC
Confidence 7899999999999999999447899887644 567889999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEEEeecccchhhHH
Q 018903 84 GMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNC 163 (349)
Q Consensus 84 g~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~~~S~Gr~ 163 (349)
|++|+||+|.++||+|+..+++|+++|+||+|||+++++.+++++|++|++|||++.++..+++++++++++.++|+||+
T Consensus 80 g~~~~l~vg~~~ak~la~~~~~~~~~v~h~~aH~~~a~~~~~~~~~l~l~vsGg~t~~~~~~~~~~~~l~~t~d~S~G~~ 159 (535)
T PRK09605 80 GLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIGRLTTGAEDPVTLYVSGGNTQVLAYLNGRYRVFGETLDIGVGNA 159 (535)
T ss_pred CcHhhHHHHHHHHHHHHHHhCCCeecccHHHHHHHHhhhccCCCCCeEEEEecCCeEEEEEcCCeEEEEEeecchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999988777789999999999999999
Q ss_pred HHHHHhHcCCCCCCCch-hHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 018903 164 LDRFARVLTLSNDPSPG-YNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFA 242 (349)
Q Consensus 164 ~Dava~lLGl~~~~~eG-~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~ 242 (349)
||++|++||++ ++| ++||++|.++++.+.+|...++.+++|+++++++.+.+.+ ..+..+||++||+++++
T Consensus 160 fD~va~~Lg~~---~~g~~~le~lA~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~iA~~~q~~l~~ 231 (535)
T PRK09605 160 LDKFARHVGLP---HPGGPKIEKLAKDGKKYIDLPYVVKGMDFSFSGLLTAAKRAYDA-----GEPLEDVCYSLQETAFA 231 (535)
T ss_pred HHHHHHHhCCC---CCCCHHHHHHHhcCCCcccCCCcCCCCCEeehHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHH
Confidence 99999999998 456 8999999988654344433334568999999887776543 23568999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCCCCCcccc
Q 018903 243 MLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSSTPLEEST 322 (349)
Q Consensus 243 ~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~~~~~~~ 322 (349)
.++++++++.+++++++||+|||||+|++|+++|.+.+++.++++|+||+.||||||+||||+++..+..+.+.++++.+
T Consensus 232 ~l~~~~~~~~~~~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g~~~~~~~~~ 311 (535)
T PRK09605 232 MLTEVTERALAHTGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAGDTLDIEDTR 311 (535)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcCCCCCccccc
Confidence 99999999999999999999999999999999999998888999999999999999999999999988877766677788
Q ss_pred cccCccCccccccccccccc
Q 018903 323 FTQRFRTDEVHAVWREKEDS 342 (349)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ 342 (349)
++|+|+.+++..+|+..+..
T Consensus 312 ~~p~~~~~ev~~~~~~~~~~ 331 (535)
T PRK09605 312 VNPNFRTDEVEVTWIKEEEV 331 (535)
T ss_pred ccCCCccccceeeecccccc
Confidence 99999999999999877653
No 7
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=100.00 E-value=1.6e-61 Score=458.52 Aligned_cols=302 Identities=34% Similarity=0.553 Sum_probs=267.3
Q ss_pred EEEEecCCcceeEEEEEcCC-eEEEeeeeec--cCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 6 ALGFEGSANKIGVGVVTLDG-SILSNPRHTY--FTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg-~i~~~~~~~~--~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
||+||||++++++||++ ++ ++++..+.++ +++.++|++|..+.+.|++.|+++|+++|++++++++|||+|+|+.|
T Consensus 1 iLaIdTs~~~~sval~~-~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~G 79 (314)
T TIGR03723 1 ILGIETSCDETAVAIVD-DGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAG 79 (314)
T ss_pred CEEEECcccceEEEEEE-CCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 69999999999999999 65 4888776554 25788999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhc-CCCCC-eEEEEeCCeeEEEEE-eCCcEEEEeecccch
Q 018903 83 PGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVT-GAEDP-VVLYVSGGNTQVIAY-SEGRYRIFGETIDIA 159 (349)
Q Consensus 83 Pg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s-~~~~p-~~l~i~gg~~~~~~~-~~g~~~~~~~~~~~S 159 (349)
||+|||+|+|+++||+|+..+++|+++|+||++||+++++.+ ++++| ++|++|||++.++.. +++++++++++.++|
T Consensus 80 PGsftglrig~~~Ak~la~~~~~p~~~v~h~~aha~~a~~~s~~~~~~~lvL~vdgg~s~~~~~~~~~~~~~l~~t~d~S 159 (314)
T TIGR03723 80 PGLIGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFLEDKPLEFPFLALLVSGGHTQLVLVKGVGDYELLGETLDDA 159 (314)
T ss_pred CChHHhHHHHHHHHHHHHHHhCCCEEecccHHHHHHhhhhccCCCCCCEEEEEEeCCCcEEEEEecCCeEEEeeccCCch
Confidence 999999999999999999999999999999999999999987 67777 688999999887654 578999999899999
Q ss_pred hhHHHHHHHhHcCCCCCCCch-hHHHHhhhhCCC-CCCCcccc---CCceeechhHHHHHHHHHHHHc-CCCCCCHHHHH
Q 018903 160 VGNCLDRFARVLTLSNDPSPG-YNIEQLAKKGEK-FLDLPYVV---KGMDVSFSGILSYIEATAAEKL-NNNECTPADLC 233 (349)
Q Consensus 160 ~Gr~~Dava~lLGl~~~~~eG-~~le~lA~~g~~-~~~~~~~~---~~~~~~f~~l~~~~~~~~~~~~-~~~~~~~~diA 233 (349)
+|.+||+++++|||. ++| +++|+||++|++ .+.++... .+++++|+|+++.+.++++... +++.+...+||
T Consensus 160 lG~~yd~vt~~LG~~---~~~g~kvmgLA~~g~~~~~~~~~~~~~~~~~~~sfsg~~~~~~~~~~~~~~~~~~~~~~~iA 236 (314)
T TIGR03723 160 AGEAFDKVARLLGLG---YPGGPAIDKLAKEGDPKAFKFPRPMTGRPGLDFSFSGLKTAVLNLIEKLKQKGEELDKADIA 236 (314)
T ss_pred hhHHHHHHHHHcCCC---CCCcHHHHHHHhhCCCCEeECChhhccCCCCCEecccHHHHHHHHHHhcccCccccCHHHHH
Confidence 999999999999997 455 899999999975 23443322 3567999999987777665421 11224578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHH
Q 018903 234 YSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFA 311 (349)
Q Consensus 234 ~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~ 311 (349)
++||+++++.++++++++.+++++++||++||||+|++|+++|.+.++++++++|+||+.||||||+||||++++.++
T Consensus 237 ~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag~~~~~ 314 (314)
T TIGR03723 237 ASFQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAGYERLK 314 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999889999999999999999999999998874
No 8
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=100.00 E-value=4.9e-61 Score=454.20 Aligned_cols=294 Identities=41% Similarity=0.655 Sum_probs=260.6
Q ss_pred EEEecCCcceeEEEEEcCCeEEEeeeeecc--CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 7 LGFEGSANKIGVGVVTLDGSILSNPRHTYF--TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 7 LgIdts~~~~sval~~~dg~i~~~~~~~~~--~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
|||||||+++|+||+++++++++..+.++. ++.++|++|..+.+.|.+.|+++++++|+++|++++|||.|+|+.|||
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG 80 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPG 80 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence 799999999999999933889998776653 467899999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcC--CCCCeEEEEeCCeeEEEEEeCC-cEEEEeecccchhh
Q 018903 85 MGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTG--AEDPVVLYVSGGNTQVIAYSEG-RYRIFGETIDIAVG 161 (349)
Q Consensus 85 ~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~--~~~p~~l~i~gg~~~~~~~~~g-~~~~~~~~~~~S~G 161 (349)
+|||+|+|+.+||.|+..+++|+++|+||++|++++++.++ +..+++|++|||++.++..+++ ++++++++.++|+|
T Consensus 81 ~~tglrvg~~~Ak~la~~~~~p~~~v~hl~~ha~~a~~~s~~~~~~~l~l~vsGG~t~l~~~~~~~~~~~l~~t~d~S~G 160 (305)
T TIGR00329 81 LGGSLRVGATFARSLALSLDKPLIGVNHLLGHIYAPRLDTNILQFPFVSLLVSGGHTQIIAVKGIGDYEVLGETLDDAVG 160 (305)
T ss_pred chhhHHHHHHHHHHHHHHhCCCEeecccHHHHHHHhhhhcCCCCCCcEEEEEcCCceEEEEEeCCCcEEEeeeecCchhh
Confidence 99999999999999999999999999999999999999988 6556899999999988876554 99999999999999
Q ss_pred HHHHHHHhHcCCCCCCCch-hHHHHhhhhCCC-CCCCccc--cC-CceeechhHHHHHHHHHHHHc-CCCCCCHHHHHHH
Q 018903 162 NCLDRFARVLTLSNDPSPG-YNIEQLAKKGEK-FLDLPYV--VK-GMDVSFSGILSYIEATAAEKL-NNNECTPADLCYS 235 (349)
Q Consensus 162 r~~Dava~lLGl~~~~~eG-~~le~lA~~g~~-~~~~~~~--~~-~~~~~f~~l~~~~~~~~~~~~-~~~~~~~~diA~~ 235 (349)
|+||++|++||++ ||| ++||++|.++++ .++++.. .. ..+++|+++++++.+.+.+.. +....++.+||++
T Consensus 161 rlfD~va~lLGl~---y~g~~~iE~lA~~~~~~~~~~~~~~~~~~~~~~s~sgl~~~~~~~~~~~~~~~~~~~~~~iAas 237 (305)
T TIGR00329 161 EAFDKVARLLGLG---YPGGPKIEELAKKGDKLPFYFPLPYTVKPMLDFSFSGLKTAALRKIEKLKKNLNEATKEDIAYS 237 (305)
T ss_pred HHHHHHHHHcCCC---CCChHHHHHHHhhCCCccccCCCccccCCCCcEEchHHHHHHHHHHHhcccccccccHHHHHHH
Confidence 9999999999998 888 899999998864 3444332 22 236999999988876655421 1112457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHH
Q 018903 236 LQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIA 303 (349)
Q Consensus 236 ~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG 303 (349)
||+++++.++++++++.+++++++||++||||+|++|+++|.+.++..++++|+||+.||||||+|||
T Consensus 238 fq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~DnGiMIa 305 (305)
T TIGR00329 238 FQETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPPLEFCSDNGAMIA 305 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCccHHhcC
Confidence 99999999999999999999999999999999999999999999988899999999999999999996
No 9
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-55 Score=401.21 Aligned_cols=336 Identities=30% Similarity=0.448 Sum_probs=286.5
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeec--cCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTY--FTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~--~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
++|||+|||+|++||++++-+++++.+.+++ ++..++|+.|..+...|.++++++++.||+++|.+++|+|+||||.|
T Consensus 33 ~VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~g 112 (405)
T KOG2707|consen 33 KVLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRG 112 (405)
T ss_pred eeeeEecccCcceeeeecccccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecC
Confidence 4899999999999999998889998876555 35568999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhc-CCCCC-eEEEEeCCeeEEEE-EeCCcEEEEeecccch
Q 018903 83 PGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVT-GAEDP-VVLYVSGGNTQVIA-YSEGRYRIFGETIDIA 159 (349)
Q Consensus 83 Pg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s-~~~~p-~~l~i~gg~~~~~~-~~~g~~~~~~~~~~~S 159 (349)
||+..+|++|+++|++||..+++|+++|+|++|||.+++... ..++| ++|+++|||+.+.. .+-+++++++.+.+.+
T Consensus 113 PGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~FPFl~lLvSGGH~llvla~~~~~~~llg~TvDiA 192 (405)
T KOG2707|consen 113 PGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVRFPFLALLVSGGHTLLVLANGVGDHELLGQTVDIA 192 (405)
T ss_pred CCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCcCCceeeEeeeCCceEEEEeccccceeeeecccccc
Confidence 999999999999999999999999999999999999999887 56677 79999999998654 3568999999999999
Q ss_pred hhHHHHHHHhHcCCCCCCC---ch-hHHHHhhhhCCC----CCCCccc-cCCceeechhHHHHHHHHHHHHcCCCC--CC
Q 018903 160 VGNCLDRFARVLTLSNDPS---PG-YNIEQLAKKGEK----FLDLPYV-VKGMDVSFSGILSYIEATAAEKLNNNE--CT 228 (349)
Q Consensus 160 ~Gr~~Dava~lLGl~~~~~---eG-~~le~lA~~g~~----~~~~~~~-~~~~~~~f~~l~~~~~~~~~~~~~~~~--~~ 228 (349)
.|+.||++|+.||+...+. .| +.+|.+|..++. .|++|+. .++++|||+|+++.+.+.+.+.++++. ..
T Consensus 193 pGe~lDK~ar~Lgl~~~~e~~~~~g~aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~ 272 (405)
T KOG2707|consen 193 PGEALDKCARRLGLLGHPEDARSGGKAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSE 272 (405)
T ss_pred hHHHHHHHHHHhcCCCCccchhhhhhHHHHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhh
Confidence 9999999999999975422 23 678888887653 2444443 356899999999999999887654332 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHH
Q 018903 229 PADLCYSLQETLFAMLVEITERAMAHCD-----KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIA 303 (349)
Q Consensus 229 ~~diA~~~q~~l~~~l~~~~~~~~~~~~-----~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG 303 (349)
..||||++|+++++++.+.+.++.+... .+.+|+|||||.|.+++.+|......++...+.||+.+|+|||+|||
T Consensus 273 ~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiMIa 352 (405)
T KOG2707|consen 273 IADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIMIA 352 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchhhh
Confidence 8999999999999999999999988654 45899999999999999999999888888888898889999999999
Q ss_pred HHHHHHHHcCCC--CCC--cccccccCccCcccccccccccc
Q 018903 304 YTGLLAFAHGSS--TPL--EESTFTQRFRTDEVHAVWREKED 341 (349)
Q Consensus 304 ~a~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~ 341 (349)
|.|++.++.|.. .+. +-+...|+|...++. .|.-+|-
T Consensus 353 w~Gie~l~~~r~~~~~~D~~~ir~~p~~~l~~~~-~~~~~~a 393 (405)
T KOG2707|consen 353 WTGIEMLRNGRELTSIPDIEPIRARPDNGLLEVS-GWITTEA 393 (405)
T ss_pred hHHHHHHhccccCCCccccchhhccCCCCccchh-hhhhchh
Confidence 999999999963 332 223377888887764 3554443
No 10
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-53 Score=368.60 Aligned_cols=334 Identities=75% Similarity=1.270 Sum_probs=315.4
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCC
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGP 83 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gP 83 (349)
|..||++.|.....+.+++ ||++++..|.+-+..+..|+.|..+.+.|...+.+++++.|++++++.+|||.|++|.||
T Consensus 2 ~ialG~EGSANKlGvGiv~-~~~iLaN~R~TYitPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD~icyTKGP 80 (336)
T KOG2708|consen 2 MIALGLEGSANKLGVGIVR-DGKILANPRHTYITPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDIDCICYTKGP 80 (336)
T ss_pred ceEEecccccccceeeEEe-cceeecCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEcCCC
Confidence 7889999999999999999 999999998887888999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEEEeecccchhhHH
Q 018903 84 GMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNC 163 (349)
Q Consensus 84 g~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~~~S~Gr~ 163 (349)
|.-..|.+..-.||.++..|++|+++|+|-.+|..+.+.-.+-..|++|.++||+|+++++...++++++++.+.++|-.
T Consensus 81 GmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEMGR~iTgA~nPvvLYvSGGNTQvIAYse~rYrIFGETlDIAvGNC 160 (336)
T KOG2708|consen 81 GMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEMGREITGAQNPVVLYVSGGNTQVIAYSEKRYRIFGETLDIAVGNC 160 (336)
T ss_pred CCCCchhhHHHHHHHHHHHhCCCcccchhhhhhhhhcceeccCCCCEEEEEeCCceEEEEEccceeeeecceehhhhhhh
Confidence 99888999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred HHHHHhHcCCCCCCCchhHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHH
Q 018903 164 LDRFARVLTLSNDPSPGYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLN-NNECTPADLCYSLQETLFA 242 (349)
Q Consensus 164 ~Dava~lLGl~~~~~eG~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~-~~~~~~~diA~~~q~~l~~ 242 (349)
+|.+|+.|++++.|.||+.+|++|..|++.+++|+.+++.+.||||+.+.+........+ ..+..++|+|+|+|++++.
T Consensus 161 lDRFAR~lklsN~PsPGynieq~AK~gk~~ieLPY~VKGMDvSfSGiLs~ie~~a~~~~~~~~~~t~~DLCySLQEtvFa 240 (336)
T KOG2708|consen 161 LDRFARVLKLSNDPSPGYNIEQLAKKGKNYIELPYTVKGMDVSFSGILSYIEDLAEELLKPSSEVTKEDLCYSLQETVFA 240 (336)
T ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHhccceeecceeeeccccchHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHH
Confidence 999999999998888888999999999888899998899999999999988777665432 3346899999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCCCCCcccc
Q 018903 243 MLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSSTPLEEST 322 (349)
Q Consensus 243 ~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~~~~~~~ 322 (349)
.++++.++++.+++.+.|.+.|||.+|..|.+.+..+++++|-++|.....+|=|||+||+++++..++.|.+.|++++.
T Consensus 241 mLVEiTERAMAh~~s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MIA~aG~l~~~~G~~~~~~es~ 320 (336)
T KOG2708|consen 241 MLVEITERAMAHCGSKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMIAQAGLLMFRSGARTPLSEST 320 (336)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHHHHhHHHHHhcCCccccccce
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred cccCccCccccccccc
Q 018903 323 FTQRFRTDEVHAVWRE 338 (349)
Q Consensus 323 ~~~~~~~~~~~~~~~~ 338 (349)
+..||++|||...||+
T Consensus 321 vTQr~RTDeV~v~WRd 336 (336)
T KOG2708|consen 321 VTQRYRTDEVEVTWRD 336 (336)
T ss_pred eeeeeeccceEEeecC
Confidence 9999999999999995
No 11
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=100.00 E-value=2.3e-47 Score=354.31 Aligned_cols=265 Identities=36% Similarity=0.589 Sum_probs=224.1
Q ss_pred eEEEeeeeec--cCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhc
Q 018903 26 SILSNPRHTY--FTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLW 103 (349)
Q Consensus 26 ~i~~~~~~~~--~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~ 103 (349)
+|++....++ +++.|+|++|+.+.+.|++.|+++|+++|++++++++|||+|+|+.|||+|||||+|.++||+|+..+
T Consensus 1 ~vl~~~~~sq~~~~~~~gGv~P~~a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~ 80 (268)
T PF00814_consen 1 KVLSNVIASQIEIHAQYGGVVPEIASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALAL 80 (268)
T ss_dssp -EEEEEEEE--E---TTSSSSHCCHHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeeccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 4666666565 36889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEEEeecccchhhHHHHHHHhHcCCCCCCCch-hH
Q 018903 104 KKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPG-YN 182 (349)
Q Consensus 104 ~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~~~S~Gr~~Dava~lLGl~~~~~eG-~~ 182 (349)
++|+++|+|+++|+.++....+.++|+++++||+++++|...++.++.++.+.+.+.|+.+|+++++||+. |+| +.
T Consensus 81 ~~Pli~v~~l~a~a~~~~~~~~~~~P~~~~isa~~~~vy~~~~~~~~~~~~t~d~~~ge~~dk~~~~l~l~---~~~g~~ 157 (268)
T PF00814_consen 81 NIPLIGVSHLEAHALSARLSEGLKFPLVLLISAGHTEVYLAEGGDYEILGETLDDAIGEAFDKVARLLGLP---YPGGPA 157 (268)
T ss_dssp T--EEEEEHHHHHHHHHHHHHTEESEEEEEEECSTCEEEEEETTEEEEECCBSSSCHHHHHHHHHHHTT-----SSHHHH
T ss_pred CCCeEeeccHHHHHHhHhhhccccCceEEEEECCCccEEEEEeeEEEeeccccccccHHHHhhHHHHhccc---cccCcH
Confidence 99999999999999999876555566889999999999987567888889999999999999999999998 666 89
Q ss_pred HHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 018903 183 IEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLI 262 (349)
Q Consensus 183 le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~l 262 (349)
+|.+|..+ ..+.+|....+.+|+|+|+++++.+.+++ .+||++||+++.+.+.+.+.++.+..+.++|++
T Consensus 158 le~la~~~-~~~~~p~~~~~~~~sFsG~~t~~~~~i~~---------~~iA~s~q~~~~~~l~~~~~~a~~~~~~~~lv~ 227 (268)
T PF00814_consen 158 LEKLASEG-EAFKFPRPLKNCDFSFSGLKTAVYRLIEK---------ADIAASFQEAIADHLAKKAPRALEKPRAKSLVV 227 (268)
T ss_dssp HHHHHCT--S------SEETTEEEEHHHHHHHHHHHHT---------HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHhC-CcceeccceeeeeEEEEcccHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 99999888 65777765566899999999998887642 999999999999999999999999999999999
Q ss_pred EccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 263 VGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 263 sGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
+|||+.|++|++.+.+.+.. ++++|+||+.+|+||++||||
T Consensus 228 ~GGVaaN~~lr~~l~~~~~~-~~~~~~p~~~y~~Dnaamiaw 268 (268)
T PF00814_consen 228 SGGVAANKYLREGLRKLCSE-GIKLFFPPPRYCTDNAAMIAW 268 (268)
T ss_dssp ESGGGGHHHHHHHHHHHHHH-TSEEE---HHHCSS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCEEEcCCHHHcchhHHHhCc
Confidence 99999999999999998888 899999998899999999998
No 12
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-44 Score=346.29 Aligned_cols=312 Identities=19% Similarity=0.232 Sum_probs=231.3
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHH-HHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVL-PLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~-~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
|+||||..+.||.++||++ ||+||+++.++| .+++||....| ..++.||+.+++.+.|||+|++...
T Consensus 1 m~ILGis~~~HD~aaaLv~-Dg~iVaAv~EER-----------ftR~K~~~~fP~~sv~~~L~~~~~~~~dVD~va~~~~ 68 (555)
T COG2192 1 MYILGISDGYHDAAAALVR-DGEIVAAVEEER-----------FTRKKHDAGFPEQSVDYCLRLAGIELTDVDAVAVAGK 68 (555)
T ss_pred CEEEEeccCCCCcceEEEe-CCeEEEEehhhh-----------hchhccccCCchHHHHHHHhhccCCcccccEEEEcCC
Confidence 7899999999999999999 999999987664 34455555555 4799999999999999999999876
Q ss_pred CCCCc----------------hhHHHHHHHHHHH-------hhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCe-
Q 018903 83 PGMGA----------------PLQVAAVVVRVLS-------QLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGN- 138 (349)
Q Consensus 83 Pg~~t----------------~lr~g~~~ak~la-------~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~- 138 (349)
|...- .++.+..+.+.++ ..+.+++..++||.|||++||++|||++++++++||..
T Consensus 69 ~~~~~~r~~~~yl~~~~~~~~~~~~k~~l~~~~~~l~~~~~~~~~~kv~~~eHH~aHAasAf~~SpF~~a~vl~iDg~Gd 148 (555)
T COG2192 69 PSAKFRRILAGYLKRKPELFGKLLLKKLLKRLLAELDQFFGKGLPVKVLFVEHHLAHAASAFFTSPFEEALVLTIDGAGD 148 (555)
T ss_pred cHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhhhhccccCccceeechHHHHHHHHHhcCCCcccceEEEEeccCC
Confidence 64211 0111222222222 34557889999999999999999999999999999843
Q ss_pred --eEEEE-EeCCcEEEEee-cccchhhHHHHHHHhHcCCCCCCCchhHHHHhhhhCCCCCCCccc--cCC-ceeechhHH
Q 018903 139 --TQVIA-YSEGRYRIFGE-TIDIAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFLDLPYV--VKG-MDVSFSGIL 211 (349)
Q Consensus 139 --~~~~~-~~~g~~~~~~~-~~~~S~Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~~~~~~~~~--~~~-~~~~f~~l~ 211 (349)
+..++ .+++++..+.+ +.++|+|.||.+++.+|||.+.+.| .|+|+||+||++.|..... .++ .+..+- +-
T Consensus 149 ~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY~~~T~~lGf~~n~~E-gKvMgLAaYG~p~y~~~~~d~l~~~~~~~~~-i~ 226 (555)
T COG2192 149 GLSTSVWHGRNGQLTPIAQSRGIDSLGLFYAAFTELLGFKPNSDE-GKVMGLAAYGDPNYDLSLLDLLREKEDGLFV-IN 226 (555)
T ss_pred ceEEEEEeccCCeeEEEEeecCcchHHHHHHHHHHHhCCCCCCCC-ccEEEeeccCCcccchHHHHHHhhcccccee-cc
Confidence 33333 35677776655 6789999999999999999975433 5899999999875432110 111 000000 00
Q ss_pred HHHHH---------HH---HHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHH
Q 018903 212 SYIEA---------TA---AEKL--NNNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMR 277 (349)
Q Consensus 212 ~~~~~---------~~---~~~~--~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~ 277 (349)
.+... +. .++. ....+...|||+++|..+++.++++.+.+.++++..+||++||||+||.+|.++.
T Consensus 227 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g~~~L~~AGGVAlNv~~N~~~l 306 (555)
T COG2192 227 GELLKRLARLGTFSLLGALKRRLPESPSTERAADIAASAQAYLEELVLEMLRYLREETGEDNLALAGGVALNVKANGKLL 306 (555)
T ss_pred HHHHHhccccceeccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceEEccceeeeeeehHhHh
Confidence 00000 00 1110 1223678999999999999999999999999999999999999999999997776
Q ss_pred HHHHhcCC-EEEEcCCCCCChHHHHHHHHHHHHHHcCCC-C--CCcccccccCccCccccc
Q 018903 278 TMCSERGG-RLFATDDRYCVDNGAMIAYTGLLAFAHGSS-T--PLEESTFTQRFRTDEVHA 334 (349)
Q Consensus 278 ~~l~~~g~-~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~ 334 (349)
+.. .+ +||||| .+||+|.++|+|.+...+.+-. + .|++.++||+|++++|-+
T Consensus 307 ~~~---~f~dlfV~P--a~gD~G~AvGAAl~~~~~~~~~~~~~~l~~~ylGp~ys~~~ve~ 362 (555)
T COG2192 307 RRG---LFEDLFVQP--AMGDAGLAVGAALAVKRELGGAARPPRLEHVYLGPEYSDEEVEK 362 (555)
T ss_pred hcc---cCceeEecC--CCCCcchHHHHHHHHHHHhcCCCCcccccccccCcccChHHHHH
Confidence 542 34 899999 6999999999998887765554 3 399999999999997654
No 13
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=100.00 E-value=2.2e-32 Score=282.36 Aligned_cols=272 Identities=15% Similarity=0.156 Sum_probs=197.5
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~ 85 (349)
||++-. .....+||.. +++++-.. +-+.. -......+.+. .++...+-.++ +.+.|+++.||++
T Consensus 364 vla~G~-~lknt~~l~~-~~~~~~S~-------~iGDl-~~~~~~~~~~~---~~~~~~~l~~~---~p~~i~~D~HP~y 427 (711)
T TIGR00143 364 ILALGA-ELKNTFSLLK-GGQAYLSQ-------HIGDL-SVYETYKFFKE---ALNFFLRIYDF---EPQDIVCDLHPQY 427 (711)
T ss_pred EEEech-hhcceEEEEe-CCEEEEcC-------cccCc-CCHHHHHHHHH---HHHHHHHHHCC---CCCEEEEeCCCCc
Confidence 566533 3344578887 66654422 12221 12223333333 44444444445 6899999999999
Q ss_pred CchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCC-CCC-eEEEEeCCe---------eEEEEEe---------
Q 018903 86 GAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGA-EDP-VVLYVSGGN---------TQVIAYS--------- 145 (349)
Q Consensus 86 ~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~-~~p-~~l~i~gg~---------~~~~~~~--------- 145 (349)
+|. .+|..+++|++.|+||+||+++++.+++. +.| +.+..||.. .+++..+
T Consensus 428 ~st---------~~a~~~~~~~~~vQHH~AH~~a~mae~~l~~~~~lg~~~DGtGyG~Dg~iWGGE~l~~~~~~~~R~~h 498 (711)
T TIGR00143 428 NTT---------QYAEELSLPVLRVQHHHAHALAVMADAGVLEEAVIGITWDGVGYGEDGKIWGGECLLIDLGRIERLGR 498 (711)
T ss_pred hhH---------HHHHHcCCCeeeeeHHHHHHHHHHHhcCCCcCCeEEEEEeCCccCCCCCeeeeEEEEEeCCceEEEec
Confidence 875 34556689999999999999999999988 767 567777621 1111110
Q ss_pred -------CCc-------------E---E---------EEe------------------ecccchhhHHHHHHHhHcCCCC
Q 018903 146 -------EGR-------------Y---R---------IFG------------------ETIDIAVGNCLDRFARVLTLSN 175 (349)
Q Consensus 146 -------~g~-------------~---~---------~~~------------------~~~~~S~Gr~~Dava~lLGl~~ 175 (349)
+|+ + + .+. .+..+|+|||||++|++||++.
T Consensus 499 l~~~~l~GGd~a~~~p~R~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~tSS~GRlFDaVAalLGl~~ 578 (711)
T TIGR00143 499 LEEFWLLGGDLATKYPLRILLSILLKHDLNDFLKRYQKYFKQEKELSVLQQALEKKINAPLTTSTGRLFDAVAAALGLCG 578 (711)
T ss_pred cccccCCChhHHHHHHHHHHHHHHHhCcccccchhhhhcCcchHHHHHHHHHHHhCCCCcccCCCCcHHHHHHHHcCCCc
Confidence 110 0 0 011 1236999999999999999986
Q ss_pred C-CCch---hHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018903 176 D-PSPG---YNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERA 251 (349)
Q Consensus 176 ~-~~eG---~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~ 251 (349)
. +||| ..||.+|..+...+.++...++..++|+++..++.+.+.+ ..+..+||++||+++++.++++++++
T Consensus 579 ~~syEGqAa~~LE~lA~~s~~~v~~~~~i~~~~id~~~l~~~ii~~l~~-----g~~~~~IAa~fh~tla~~L~~~a~~~ 653 (711)
T TIGR00143 579 ERTYEGEAAIALEALALRSDGIANYPFEIKNKVLDLKEFYQRFLEDLLV-----GEDRSKIAHIAHKFVASGLVEIATAI 653 (711)
T ss_pred ccccchhhHHHHHHHHhcCCCccccCccccCCccCHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5897 4789888765432122222234468899998888777654 35679999999999999999999999
Q ss_pred HHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHH
Q 018903 252 MAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGL 307 (349)
Q Consensus 252 ~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~ 307 (349)
.++++.++|+|+||||+|++|+++|.+.+.+.|+++|+|+..||||||+||||+.+
T Consensus 654 ~~~~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~ 709 (711)
T TIGR00143 654 AVPFGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVA 709 (711)
T ss_pred HHHcCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999765
No 14
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.7e-30 Score=253.55 Aligned_cols=273 Identities=15% Similarity=0.199 Sum_probs=194.6
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
.+|++-. --+..+||++ .|+.+-.. +. | ++++..-.+.+..+++..++-.++++ |.|+++.||.
T Consensus 398 ~ila~Ga-elknTf~l~k-~~~~~lSQ-------~i-G---dls~~~t~~~~~ea~~~~~~~~~~~p---d~i~cDlHP~ 461 (750)
T COG0068 398 KILALGA-ELKNTFCLLK-GGKAYLSQ-------HI-G---DLSNLETLEFFREALRHFLKIYDFEP---DYIVCDLHPN 461 (750)
T ss_pred ceeeecc-cccceEEEEE-CCeEeecc-------cc-C---cchhhhHHHHHHHHHHHHHHHhcCCC---ceEEEecCcc
Confidence 3555533 3455678888 67654422 11 2 22223333455566777777666643 9999999999
Q ss_pred CCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCC--CC-eEEEEeCCe----eE-----EEEEe-------
Q 018903 85 MGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAE--DP-VVLYVSGGN----TQ-----VIAYS------- 145 (349)
Q Consensus 85 ~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~--~p-~~l~i~gg~----~~-----~~~~~------- 145 (349)
+.|. .+|..++.|++.|+||+||++++++++++. ++ +++..||-. .+ ++..+
T Consensus 462 y~tt---------~~A~e~~~~~~~VqHH~AH~~a~mae~~~~~~~~vi~ia~DG~GyG~dGk~WGGE~l~~d~~~~erl 532 (750)
T COG0068 462 YNTT---------KYAEEFALPLLQVQHHHAHALAVMAEHGLPLDEKVIGIALDGVGYGEDGKVWGGEFLVIDYKEYERL 532 (750)
T ss_pred cchh---------hHHHhhcccceeehhhHHHHHHHHhccCCCCCCceEEEEecCccccccCceecceEEeeccHhhhhh
Confidence 9874 455566689999999999999999998863 34 566666621 11 11100
Q ss_pred ---------CCc---------------------E------------EE--------EeecccchhhHHHHHHHhHcCCCC
Q 018903 146 ---------EGR---------------------Y------------RI--------FGETIDIAVGNCLDRFARVLTLSN 175 (349)
Q Consensus 146 ---------~g~---------------------~------------~~--------~~~~~~~S~Gr~~Dava~lLGl~~ 175 (349)
+|+ + ++ +..+..+|+||+||++|.+||++.
T Consensus 533 ahl~~~~L~GGd~Aik~P~R~~ls~l~~~~~~~~k~~~~~~~e~~~~~l~~~~e~gin~p~tSS~GRlfDAvaalLgi~~ 612 (750)
T COG0068 533 AHLEYVDLPGGDLAIKYPLRMALSILLRFFLKLIKNYNEKYGELELKVLAQALEKGINAPLTSSIGRVFDAVAALLGICE 612 (750)
T ss_pred ccCcccccCCCchhhhchHHHHHHHHHHhhhHHHHhhchhhhhhhHHHHHHHHHhccCccccccccHHHHHHHHHhhhhc
Confidence 111 0 00 012346999999999999999996
Q ss_pred C-CCch---hHHHHhhhhCC-CCCCCccccCCc-eeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018903 176 D-PSPG---YNIEQLAKKGE-KFLDLPYVVKGM-DVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITE 249 (349)
Q Consensus 176 ~-~~eG---~~le~lA~~g~-~~~~~~~~~~~~-~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~ 249 (349)
. +||| .+||++|.... ..+++.+..++. .+++..+...+..++- ..+..+||..||.++++.+++++.
T Consensus 613 ~~tYEGE~A~~LEa~a~~~~~~~~~~~~~~~~~~vld~~~~~~~~l~~~~------~~~~~~iA~~fh~~la~~~~e~~~ 686 (750)
T COG0068 613 TRTYEGEAAMALEALADQSDGVDYPYEIKNEDNQVLDLKELILGVLEDLL------KDEPEKIATKFHNALAEGFAELAV 686 (750)
T ss_pred eeeeccchhhhHHHHhhhcccCcccceeccCCccEeeHHHHHHHHHHHhc------cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6 6998 47899998742 334443333333 3554433333333221 267899999999999999999999
Q ss_pred HHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHH
Q 018903 250 RAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLL 308 (349)
Q Consensus 250 ~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~ 308 (349)
.+.+++|+++|++|||||+|++|.+.+.+.++..||++++|..+|+||+|+++||+.+.
T Consensus 687 ~~a~~~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~ 745 (750)
T COG0068 687 ELAKKYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAA 745 (750)
T ss_pred HHHHhcCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765
No 15
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=99.95 E-value=2.9e-27 Score=227.73 Aligned_cols=207 Identities=14% Similarity=0.157 Sum_probs=129.1
Q ss_pred HHhhhhcCCCCC-eEEEEeCCe---e-EEEEEeCCcEEEEe-eccc---chhhHHHHHHHhHcCCCCCCCchhHHHHhhh
Q 018903 118 EMGRIVTGAEDP-VVLYVSGGN---T-QVIAYSEGRYRIFG-ETID---IAVGNCLDRFARVLTLSNDPSPGYNIEQLAK 188 (349)
Q Consensus 118 ~sa~~~s~~~~p-~~l~i~gg~---~-~~~~~~~g~~~~~~-~~~~---~S~Gr~~Dava~lLGl~~~~~eG~~le~lA~ 188 (349)
+|+|+.|+|++. ++|++||+. + .++..++++++.+. ...+ .|+|.||.+++.+|||.+...| +|+|+||+
T Consensus 1 aSaf~~S~F~~a~~vlv~DG~Gd~~s~~~~~~~~~~~~~~~~~~~~~s~~slG~~Y~~~T~~lGf~~~~~e-gKvMGLA~ 79 (360)
T PF02543_consen 1 ASAFYPSPFDEACAVLVIDGGGDGESTSIYHARGGEIERIRESSYPHSGNSLGYFYEAITEYLGFKPNSDE-GKVMGLAA 79 (360)
T ss_dssp HHHHTTTS-SEE-EEEEESS-SSSEEEEEEEEETTEEEE--EEEEEGG-G-HHHHHHHHHHHTTS-TT--H-HHHHHHHT
T ss_pred CcccCcCCCCcCeEEEEEECCCCCcceEEEEecCCEEEEeeeecCCchHHHHHHHHHHHHHhcCCCCCCcc-cceeeecc
Confidence 578999999999 999999853 2 23445778887653 3444 4599999999999999863222 69999999
Q ss_pred hCCCC-CCCccccCCceeechhH--HHHHHHHHHH----H---c-C--C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018903 189 KGEKF-LDLPYVVKGMDVSFSGI--LSYIEATAAE----K---L-N--N--NECTPADLCYSLQETLFAMLVEITERAMA 253 (349)
Q Consensus 189 ~g~~~-~~~~~~~~~~~~~f~~l--~~~~~~~~~~----~---~-~--~--~~~~~~diA~~~q~~l~~~l~~~~~~~~~ 253 (349)
||++. ...+.......+++.+. .......... . . + + ..+.+.|+|+++|+.+++.++++++++.+
T Consensus 80 YG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~ 159 (360)
T PF02543_consen 80 YGKPPDRFDELLEELFSLNFDGDFDFRQKIPFLSTSLLRFIDFFARSPEEPLTQRHADLAASAQKVLEEIVLHLVRHLLE 159 (360)
T ss_dssp TS--S-TTTTTEEEETTEEEETTSHHHHHHHHHSSS----EEEETTTCEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhccccCCCeeeeccccccccchhhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99432 11111000001111111 1111111110 0 0 0 0 12578999999999999999999999999
Q ss_pred HcCCCe-EEEEccchhcHHHHHHHHHHHHhcCC-EEEEcCCCCCChHHHHHHHHHHHHHHcCCCCCCcc-cccccCccCc
Q 018903 254 HCDKKD-VLIVGGVGCNERLQEMMRTMCSERGG-RLFATDDRYCVDNGAMIAYTGLLAFAHGSSTPLEE-STFTQRFRTD 330 (349)
Q Consensus 254 ~~~~~~-v~lsGGVa~N~~l~~~l~~~l~~~g~-~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~~~~~-~~~~~~~~~~ 330 (349)
++++++ |||+||||+||.+|.+|.+.. ++ +||||| .|||.|++||+|.+..++.+...|+.. .|+||+|+.+
T Consensus 160 ~~g~~~~L~laGGvaLN~~~N~~l~~~~---~~~~v~V~P--a~gD~G~aiGaA~~~~~~~~~~~~~~~~~ylG~~~~~~ 234 (360)
T PF02543_consen 160 RTGIDNNLCLAGGVALNCKANGRLLEEP---GFDNVFVPP--AAGDAGLAIGAALYAWHELGGRRPRKWSPYLGPEYSDD 234 (360)
T ss_dssp HHT--SEEEEESGGGG-HHHHHHHHTST---T-SEEE--T--TTSGGGHHHHHHHHHHHHTT------S--B-S----HH
T ss_pred HhCCCCeEEEechHHHHHHHHHHHHhcC---CCCeEEECC--CCCCcchHHHHHHHHHHHhcCCCCCCCccCCCCCCCch
Confidence 999887 999999999999999998753 56 799999 699999999999999888777655433 5899999997
No 16
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.88 E-value=5.7e-20 Score=170.26 Aligned_cols=235 Identities=15% Similarity=0.219 Sum_probs=171.2
Q ss_pred CcEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 3 RMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 3 ~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
.|+++|||.++..+.++|++ +++++...... .|..|. +....+++.+|++.|++.++++.+++| |
T Consensus 31 ~m~~~GIDiGStt~K~Vlld-~~~i~~~~~~~------tg~~~~-------~~a~~~l~~~l~~~g~~~~~v~~~~~T-G 95 (293)
T TIGR03192 31 KIITCGIDVGSVSSQAVLVC-DGELYGYNSMR------TGNNSP-------DSAKNALQGIMDKIGMKLEDINYVVGT-G 95 (293)
T ss_pred ccEEEEEEeCchhEEEEEEe-CCEEEEEEeec------CCCCHH-------HHHHHHHHHHHHHcCCcccceEEEEEE-C
Confidence 47899999999999999999 78876643221 133232 234468899999999988899999876 4
Q ss_pred CCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEE-eCCcEEEE--eecccch
Q 018903 83 PGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAY-SEGRYRIF--GETIDIA 159 (349)
Q Consensus 83 Pg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~-~~g~~~~~--~~~~~~S 159 (349)
-| |....++ + . .++...||+.++.+..|-+--.+|.+.|++++++.. ++|++.-+ ++.|...
T Consensus 96 yG-----r~~~~~a-------~-~--~v~EItaha~Ga~~~~pp~v~tIIDIGGQDsK~I~~d~~G~v~dF~MNdkCAAG 160 (293)
T TIGR03192 96 YG-----RVNVPFA-------H-K--AITEIACHARGANYMGGNAVRTILDMGGQDCKAIHCDEKGKVTNFLMNDKCAAG 160 (293)
T ss_pred cc-----hhhcchh-------h-c--ceeeHHHHHHHHHHhcCCCCCEEEEeCCCceEEEEEcCCCcEeeeeecCccccc
Confidence 33 1111111 1 1 268889999999876421111789999999998876 56766533 5678889
Q ss_pred hhHHHHHHHhHcCCCCCCCchhHHHHhhhhCC-CCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018903 160 VGNCLDRFARVLTLSNDPSPGYNIEQLAKKGE-KFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQE 238 (349)
Q Consensus 160 ~Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~-~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~ 238 (349)
.|+|+|.+++.||++. .++..+|.... .+++ ..+.|..|. +++++.++.+ ..+.+||++++++
T Consensus 161 TGrFLE~~A~~Lgi~l-----eel~~~a~~~~~~p~~----Iss~CtVFA--eSevi~l~~~-----G~~~edI~aGl~~ 224 (293)
T TIGR03192 161 TGRGMEVISDLMQIPI-----ADLGPRSFDVETEPEA----VSSICVVFA--KSEALGLLKA-----GYTKNMVIAAYCQ 224 (293)
T ss_pred ccHHHHHHHHHcCCCH-----HHHHHHHHhcCCCCCC----cCCcceEec--cHhHHHHHHC-----CCCHHHHHHHHHH
Confidence 9999999999999973 34544553322 2222 356677787 7889988886 4889999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEE
Q 018903 239 TLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFA 289 (349)
Q Consensus 239 ~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~ 289 (349)
++++.++.++++. .-.++|+++|||+.|..+++.+++.| +.+++.
T Consensus 225 sia~rv~~~~~~~---~i~~~v~~~GGva~N~~l~~al~~~L---g~~v~~ 269 (293)
T TIGR03192 225 AMAERVVSLLERI---GVEEGFFITGGIAKNPGVVKRIERIL---GIKAVD 269 (293)
T ss_pred HHHHHHHHHhccc---CCCCCEEEECcccccHHHHHHHHHHh---CCCcee
Confidence 9999988877653 22357999999999999999999987 567763
No 17
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=99.87 E-value=5e-20 Score=172.78 Aligned_cols=240 Identities=21% Similarity=0.278 Sum_probs=177.9
Q ss_pred CCCcEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 1 MKRMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 1 m~~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
|..|.+||||.++.++.++|++ |+++|...-+.. ..| .|. ....+++.|++.+.+..+|+.+++|
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~-d~~~I~~~~~~~----t~g-~p~---------~~~~l~~~le~l~~~~~~I~~~~~T 196 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLME-DGKEILYGFYVS----TKG-RPI---------AEKALKEALEELGEKLEEILGLGVT 196 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEe-CCCeEEEEEEEc----CCC-Chh---------HHHHHHHHHHHcccChheeeeeeee
Confidence 4678999999999999999999 776554332211 112 122 2357999999999998999999988
Q ss_pred cCCCCCchhHHHHHHHHHH-HhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEE--Eeeccc
Q 018903 81 RGPGMGAPLQVAAVVVRVL-SQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRI--FGETID 157 (349)
Q Consensus 81 ~gPg~~t~lr~g~~~ak~l-a~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~--~~~~~~ 157 (349)
|-| |.+ ...++... .++...||+.+|.+..+--+ .++++.|++++.+..++|.+.- +++.|.
T Consensus 197 -GYG------------R~~v~~~~~aD~-~~~Ei~ah~kgA~~f~p~~d-tIiDIGGQD~K~i~i~dG~v~df~mN~~CA 261 (396)
T COG1924 197 -GYG------------RNLVGAALGADK-VVVEISAHAKGARYFAPDVD-TVIDIGGQDSKVIKLEDGKVDDFTMNDKCA 261 (396)
T ss_pred -ccc------------HHHhhhhhcCCc-ceeeeehhHHHHHHhCCCCc-EEEEecCcceeEEEEeCCeeeeeEeccccc
Confidence 432 222 22233332 25677799999988754333 7899999999998888887653 466889
Q ss_pred chhhHHHHHHHhHcCCCCCCCchhHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018903 158 IAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQ 237 (349)
Q Consensus 158 ~S~Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q 237 (349)
.+.|||++.+|+.||++ . .++..+|..++++ ...++.|..|. ++.+...+.. ..+.+||++.+.
T Consensus 262 AGtGrFLE~~A~~Lgv~---v--~E~~~~A~~~~~~----v~i~S~CaVF~--eSevi~~~~~-----G~~~EdI~AGl~ 325 (396)
T COG1924 262 AGTGRFLEVIARRLGVD---V--EELGKLALKATPP----VKINSRCAVFA--ESEVISALAE-----GASPEDILAGLA 325 (396)
T ss_pred cccchHHHHHHHHhCCC---H--HHHHHHHhcCCCC----cccCCeeEEEe--hHHHHHHHHc-----CCCHHHHHHHHH
Confidence 99999999999999997 3 3566677666542 22366788887 6777777665 488999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCe-EEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 238 ETLFAMLVEITERAMAHCDKKD-VLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 238 ~~l~~~l~~~~~~~~~~~~~~~-v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
+++.+.+.... .++..+++ |++.|||+.|..+.+.+...+ +++|++||.
T Consensus 326 ~Sv~~~v~~~~---~~~~~i~~~iv~~GGva~n~av~~ale~~l---g~~V~vP~~ 375 (396)
T COG1924 326 YSVAENVAEKV---IKRVDIEEPIVLQGGVALNKAVVRALEDLL---GRKVIVPPY 375 (396)
T ss_pred HHHHHHHHHHH---hhccCCCCCEEEECcchhhHHHHHHHHHHh---CCeeecCCc
Confidence 99998887732 24455654 999999999999999999887 689999983
No 18
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=99.86 E-value=2.9e-19 Score=171.42 Aligned_cols=241 Identities=17% Similarity=0.285 Sum_probs=178.3
Q ss_pred CCcEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 2 KRMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 2 ~~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+.++++|||.++..+.+++++ |++++..... |. ..+.+....++++.|+++|++.+|++.|+.|
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~d-d~~Ii~~~~~-----------~t---~~~~~~a~~~l~~~l~~~Gl~~~di~~i~~T- 205 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVME-DNEVIGTGWV-----------PT---TKVIESAEEAVERALEEAGVSLEDVEAIGTT- 205 (404)
T ss_pred cCCEEEEEEcChhheeeEEEc-CCeEEEEEEe-----------ec---ccHHHHHHHHHHHHHHHcCCCccceeEEEee-
Confidence 456799999999999999999 8888765321 11 1234456678999999999999999999987
Q ss_pred CCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCC-C-CeEEEEeCCeeEEEEEeCCcEE--EEeeccc
Q 018903 82 GPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAE-D-PVVLYVSGGNTQVIAYSEGRYR--IFGETID 157 (349)
Q Consensus 82 gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~-~-p~~l~i~gg~~~~~~~~~g~~~--~~~~~~~ 157 (349)
|-|. ..+...++.+.+ ++...||+.++.+..+-. . -.++.+.|++++.+..++|.+. .+++.|.
T Consensus 206 GyGR-----------~~i~~~~~ad~i-v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~dF~MNdkCA 273 (404)
T TIGR03286 206 GYGR-----------FTIGEHFGADLI-QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPDNFTMGGICA 273 (404)
T ss_pred eecH-----------HHHhhhcCCCce-EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCceeeEEEcCccc
Confidence 3221 112222334433 678889999988875421 1 1788898888888877777766 3466778
Q ss_pred chhhHHHHHHHhHcCCCCCCCchhHHHHhhhhCC-CCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 018903 158 IAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGE-KFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSL 236 (349)
Q Consensus 158 ~S~Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~-~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~ 236 (349)
...|+|++.+|+.||++ . .++..+|..++ .+.++ ...|..|. ++.+..++.+ ..+.+||++++
T Consensus 274 AGTGrFLE~~A~~Lgi~---i--eEl~~lA~~~~~~pv~I----sS~CtVFa--eSevIsll~~-----G~~~eDIaAGl 337 (404)
T TIGR03286 274 GASGRFLEMTAKRLGVD---I--TELGKLALKGMPEKVRM----NSYCIVFG--IQDLVTALAE-----GASPEDVAAAA 337 (404)
T ss_pred ccCcHHHHHHHHHhCCC---H--HHHHHHHHhCCCCCCCc----cCcccccc--cHhHHHHHHC-----CCCHHHHHHHH
Confidence 88999999999999987 4 45666776663 22333 45677787 6788888775 47899999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC-eEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 237 QETLFAMLVEITERAMAHCDKK-DVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 237 q~~l~~~l~~~~~~~~~~~~~~-~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
++++++.+...+ .++.+++ +|+++|||++|..+.+.+++.+ +.++++|+.
T Consensus 338 ~~SIa~rv~~~l---~~~~~i~~~VvftGGva~N~gvv~ale~~L---g~~iivPe~ 388 (404)
T TIGR03286 338 CHSVAEQVYEQQ---LQEIDVREPVILVGGTSLIEGLVKALGDLL---GIEVVVPEY 388 (404)
T ss_pred HHHHHHHHHHHH---hhcCCCCCcEEEECChhhhHHHHHHHHHHh---CCcEEECCc
Confidence 999999988632 2334554 5999999999999999999987 678999873
No 19
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=99.86 E-value=2.9e-19 Score=163.45 Aligned_cols=238 Identities=16% Similarity=0.213 Sum_probs=168.8
Q ss_pred EEEEEecCCcceeEEEEEcCCe---EEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLDGS---ILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~---i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+++|||.++..+.++|++++++ ++.. ...+ ..+..|. +....+++++++++|++..+++.|+.|
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~-~~~~----~~~~~~~-------~~~~~~l~~~~~~~g~~~~~i~~i~~T- 68 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAK-RNDR----IRQRDPF-------KLAEDAYDDLLEEAGLAAADVAYCATT- 68 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEE-EEec----CCCCCHH-------HHHHHHHHHHHHHcCCChhheEEEEEE-
Confidence 4799999999999999994343 2222 1111 1122232 224468999999999988899999987
Q ss_pred CCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEE-eCCcEEEE--eecccc
Q 018903 82 GPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAY-SEGRYRIF--GETIDI 158 (349)
Q Consensus 82 gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~-~~g~~~~~--~~~~~~ 158 (349)
|-| |.+... +. .++...||+.++.+..|-.. .+|.+.|++++++.. ++|++.-+ ++.|..
T Consensus 69 GYG------------R~~~~a-~~---~vtEIt~ha~GA~~~~p~~~-tIiDIGGQD~K~I~~~~~G~v~~f~MNdkCAA 131 (262)
T TIGR02261 69 GEG------------ESLAFH-TG---HFYSMTTHARGAIYLNPEAR-AVLDIGALHGRAIRMDERGKVEAYKMTSQCAS 131 (262)
T ss_pred CCc------------hhhhhh-cC---CeeEEeHHHHHHHHHCCCCC-EEEEeCCCceEEEEEcCCCcEeeEEecCcccc
Confidence 323 222111 11 14567899999988755222 789999999998876 56776544 567888
Q ss_pred hhhHHHHHHHhHcCCCCCCCchhHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018903 159 AVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQE 238 (349)
Q Consensus 159 S~Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~ 238 (349)
..|+|+|.+++.||++ . .++..++..++.+.++ .+.|..|. ++++..++.+ ..+++||++++++
T Consensus 132 GTG~FLe~~A~~L~i~---l--eel~~~a~~~~~~~~i----ss~CtVFa--eSevi~~~~~-----G~~~edI~aGl~~ 195 (262)
T TIGR02261 132 GSGQFLENIARYLGIA---Q--DEIGSLSQQADNPEKV----SGICAVLA--ETDVINMVSR-----GISAPNILKGIHE 195 (262)
T ss_pred cccHHHHHHHHHhCCC---H--HHHHHHHhcCCCCCCc----CCCceEEc--hhhHHHHHHC-----CCCHHHHHHHHHH
Confidence 8999999999999997 3 3555566555432333 56677787 7888888876 4889999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEc
Q 018903 239 TLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFAT 290 (349)
Q Consensus 239 ~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~ 290 (349)
++++.++.++++.. ...++|+++|||+.|..+++.|++.+.....++.++
T Consensus 196 sia~r~~~~~~~~~--~~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~ 245 (262)
T TIGR02261 196 SMADRLAKLLKSLG--ALDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAE 245 (262)
T ss_pred HHHHHHHHHHhccC--CCCCcEEEECcccccHHHHHHHHHHhccCCcceEec
Confidence 99999988886541 112369999999999999999999885333344443
No 20
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=99.85 E-value=7.9e-21 Score=169.65 Aligned_cols=121 Identities=23% Similarity=0.407 Sum_probs=104.9
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~ 85 (349)
||+||||+..+++||++ |+++++.... ...++|++.|+++|+++|++++++++|||.|+++.|||+
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~-------------~~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~GPGS 66 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSE-------------EAGRNHSEILLPMIEELLAEAGLSLQDLDAIAVGVGPGS 66 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEee-------------hhhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCh
Confidence 69999999999999999 8998876532 345789999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEE
Q 018903 86 GAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIA 143 (349)
Q Consensus 86 ~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~ 143 (349)
|||+|+|+++||+|+..+++|+++|+|+++.|..... ...+++.++|.++.++|.
T Consensus 67 fTGlRig~~~akgla~~~~~p~~~vssL~~lA~~~~~---~~~~v~~~idArr~~vy~ 121 (202)
T TIGR03725 67 FTGLRIGLATAKGLALALGIPLVGVSSLEALAAQAPA---GKGPVLVAIDARRGEVYW 121 (202)
T ss_pred HHhHHHHHHHHHHHHHHhCCCEEecCHHHHHHhhCcc---CCCeEEEEEEcCCCCEEE
Confidence 9999999999999999999999999999999876421 123466777887766664
No 21
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.6e-20 Score=169.24 Aligned_cols=125 Identities=21% Similarity=0.362 Sum_probs=104.9
Q ss_pred cEEEEEecCCcceeEEEEEc-CCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 4 MIALGFEGSANKIGVGVVTL-DGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~-dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
|++|+||||+..+++||++. +++++++..+ ...++|+++++++++++|+++|+++.|+|+|+|+.|
T Consensus 1 m~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~-------------~~~r~hse~l~~~i~~ll~~~~~~~~dld~iav~~G 67 (220)
T COG1214 1 MKILAIDTSTSALSVALYLADDGKVLAEHTE-------------KLKRNHAERLMPMIDELLKEAGLSLQDLDAIAVAKG 67 (220)
T ss_pred CcEEEEEcChhhhhhheeecCCCcEEEEEEE-------------eccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEccC
Confidence 78999999999999999982 3788776542 345789999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEE
Q 018903 83 PGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIA 143 (349)
Q Consensus 83 Pg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~ 143 (349)
||+|||+|||+++||+|+..+++|+++|+.+++.|.. ... ....++.+.+|.++.++|+
T Consensus 68 PGSFTGlRIG~~~AkgLA~~l~iplvgvssL~~~A~~-~~~-~~~~~v~v~idArr~~vY~ 126 (220)
T COG1214 68 PGSFTGLRIGVAFAKGLALALNIPLVGVSSLEALAQG-GAE-KNAGFVLVAIDARRGEVYW 126 (220)
T ss_pred CCcccchhhHHHHHHHHHHHcCCCEEEeCHHHHHHHh-hhc-cCCCceEEEEeccccceEe
Confidence 9999999999999999999999999999999998876 222 1122345557777766665
No 22
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.80 E-value=2.6e-17 Score=151.57 Aligned_cols=243 Identities=19% Similarity=0.249 Sum_probs=179.7
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~ 85 (349)
+||||.++..+.+++++ +|++++..... | ..+...+...+.+++++.+++.+++..|++|.. +.
T Consensus 2 ~lGIDiGtts~K~vl~d-~g~il~~~~~~----------~----~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~-~~ 65 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DGKVIGYKWLD----------T----TPVIEETARAILEALKEAGIGLEPIDKIVATGY-GR 65 (248)
T ss_pred EEEEEcChhheEEEEEc-CCEEEEEEEec----------C----CCCHHHHHHHHHHHHHHcCCChhheeEEEEECC-Cc
Confidence 78999999999999999 99998866421 1 113344557899999999998899999988742 21
Q ss_pred CchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEE--EeecccchhhHH
Q 018903 86 GAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRI--FGETIDIAVGNC 163 (349)
Q Consensus 86 ~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~--~~~~~~~S~Gr~ 163 (349)
- .+. ..+ + .++...||+.++.+..|-.+ .++++.|++++++..++|++.- +++.|....|+|
T Consensus 66 ~-----------~v~-~~~-~--~~~ei~~~~~g~~~~~~~~~-~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f 129 (248)
T TIGR00241 66 H-----------KVG-FAD-K--IVTEISCHGKGANYLAPEAR-GVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRF 129 (248)
T ss_pred c-----------ccc-ccC-C--ceEEhhHHHHHHHHHCCCCC-EEEEecCCeeEEEEECCCcEeeeeecCcccccccHH
Confidence 0 011 111 2 37799999999988765333 6888888889988877777653 455788889999
Q ss_pred HHHHHhHcCCCCCCCchhHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q 018903 164 LDRFARVLTLSNDPSPGYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAM 243 (349)
Q Consensus 164 ~Dava~lLGl~~~~~eG~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~ 243 (349)
++.+++.||++ + .+++.++..+.. |...+..|..|. ++++...+.+ ..+.+||++++++.++..
T Consensus 130 ~e~~a~~l~~~---~--~e~~~~~~~~~~----~~~~~~~c~vf~--~s~vi~~l~~-----g~~~~di~~~~~~~va~~ 193 (248)
T TIGR00241 130 LEVTARRLGVS---V--EELGSLAEKADR----KAKISSMCTVFA--ESELISLLAA-----GVKKEDILAGVYESIAER 193 (248)
T ss_pred HHHHHHHcCCC---H--HHHHHHHhcCCC----CCCcCCEeEEEe--chhHHHHHHC-----CCCHHHHHHHHHHHHHHH
Confidence 99999999997 3 356666665543 222345666777 6777777765 368899999999999999
Q ss_pred HHHHHHHHHHHcCCC-eEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHH
Q 018903 244 LVEITERAMAHCDKK-DVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTG 306 (349)
Q Consensus 244 l~~~~~~~~~~~~~~-~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~ 306 (349)
+..++.. .+.+ +|+++|||+.|..+.+.+.+.+ +.++++|+. .....++|+|.
T Consensus 194 i~~~~~~----~~~~~~Vvl~GGva~n~~l~~~l~~~l---g~~v~~~~~---~~~~~AlGaAl 247 (248)
T TIGR00241 194 VAEMLQR----LKIEAPIVFTGGVSKNKGLVKALEKKL---GMKVITPPE---PQIVGAVGAAL 247 (248)
T ss_pred HHHHHhh----cCCCCCEEEECccccCHHHHHHHHHHh---CCcEEcCCC---ccHHHHHHHHh
Confidence 9887643 3566 8999999999999999999987 678888873 22345666653
No 23
>PRK13317 pantothenate kinase; Provisional
Probab=99.67 E-value=9.8e-14 Score=129.31 Aligned_cols=250 Identities=15% Similarity=0.134 Sum_probs=168.6
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCC
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGP 83 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gP 83 (349)
++.+|||.++..+.++++++++++++...++ | ....+.+.+. ...++..|++|.+-
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~~~~~-----------------~---~~~~~~~~l~----~~~~~~~i~~TG~g 57 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFKTEYS-----------------A---EGKKVIDWLI----NLQDIEKICLTGGK 57 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEEeecc-----------------H---HHHHHHHHhh----ccCCceEEEEECcc
Confidence 4678999999999999999666666533110 1 1112333332 34678989998542
Q ss_pred CCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhc-----CCCCCeEEEEeCCeeEEEEEeCCcEEEEeecccc
Q 018903 84 GMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVT-----GAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDI 158 (349)
Q Consensus 84 g~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s-----~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~~~ 158 (349)
+. .+++.+ ..++|++.++...||+.++.+.. +. .|.+++.-|...+++.+.++..++++.++..
T Consensus 58 ~~--------~~~~~~--~~~~~~~~v~E~~a~~~g~~~l~~~~~~~~-~~~~i~~iG~g~si~~~~g~~~~r~~Gt~iG 126 (277)
T PRK13317 58 AG--------YLQQLL--NYGYPIAEFVEFEATGLGVRYLLKEEGHDL-NDYIFTNIGTGTSIHYVDGNSQRRVGGTGIG 126 (277)
T ss_pred hh--------hhhHHH--hcCCCeeeeHHHHHHHHHHHHHHHhcCCCC-CcEEEEEecCceEEEEEeCCceEEEcccccc
Confidence 21 122111 36789888999999999987775 43 3455555555666666667777777665444
Q ss_pred hhhHHHHHHHhHc-CCCCCCCchhHHHHhhhhCCC-C--------CCC---ccccCCceeechhHHHHHHHHHHHHcCCC
Q 018903 159 AVGNCLDRFARVL-TLSNDPSPGYNIEQLAKKGEK-F--------LDL---PYVVKGMDVSFSGILSYIEATAAEKLNNN 225 (349)
Q Consensus 159 S~Gr~~Dava~lL-Gl~~~~~eG~~le~lA~~g~~-~--------~~~---~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 225 (349)
. | +++.++++| +.. ++ ..|..||..|++ . |.. |.+.+..|-+|.. +..++.+
T Consensus 127 G-g-t~~gL~~lL~~~~--~~--~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFak----v~~l~~~----- 191 (277)
T PRK13317 127 G-G-TIQGLSKLLTNIS--DY--EQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGK----VLHHLDS----- 191 (277)
T ss_pred H-H-HHHHHHHHHhCCC--CH--HHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhh----hhhhhcc-----
Confidence 3 4 888889888 544 24 467789988852 1 111 1122344556663 3444433
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEc-cchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 226 ECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVG-GVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 226 ~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsG-GVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
..+++|||++++.++.+.+..++..+.+..++++|+++| |++.|..+++.+.+.++..+.++++|+. ..-..+||+
T Consensus 192 g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~---~~~~gAlGA 268 (277)
T PRK13317 192 EFTSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLEN---GGYSGAIGA 268 (277)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCC---CchhHHHHH
Confidence 478999999999999999999988888888899999999 7999999999999988766778888763 122344555
Q ss_pred HH
Q 018903 305 TG 306 (349)
Q Consensus 305 a~ 306 (349)
+.
T Consensus 269 aL 270 (277)
T PRK13317 269 LL 270 (277)
T ss_pred HH
Confidence 53
No 24
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=99.65 E-value=2.5e-14 Score=136.21 Aligned_cols=175 Identities=16% Similarity=0.163 Sum_probs=132.5
Q ss_pred eccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEe-CCcEE--EEeecccchhhHHHHHHHhHcCCCCCCCchhHHHHh
Q 018903 110 VNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYS-EGRYR--IFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQL 186 (349)
Q Consensus 110 v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~-~g~~~--~~~~~~~~S~Gr~~Dava~lLGl~~~~~eG~~le~l 186 (349)
++...||+.++.+..|--. .+|.+.|++++++..+ +|++. .+++.|....|+|++.+|+.||++ . ..+..+
T Consensus 251 itEItcHA~GA~~l~P~vr-TIIDIGGQDsK~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi~---l--eEl~~l 324 (432)
T TIGR02259 251 RSEILCHGLGAHLMYPGTR-TVLDIGGQDTKGIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMNMG---L--HELGPL 324 (432)
T ss_pred eeeHHHHHHHHHHHCCCCC-EEEEeCCCceEEEEEcCCCcEeeeeecCcccccchHHHHHHHHHcCCC---H--HHHHHH
Confidence 5899999999988754222 7899999999988864 57765 346678889999999999999997 3 355566
Q ss_pred hhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccc
Q 018903 187 AKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGV 266 (349)
Q Consensus 187 A~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGV 266 (349)
|.+++.++++ .+.|..|. ++++..++.+ ..+++||+++++++++..+..++.+... -.++|+++|||
T Consensus 325 A~~a~~pv~I----SS~CtVFA--ESEVIslla~-----G~~reDIaAGL~~SIA~Rv~s~l~r~~~--i~~~VvftGGv 391 (432)
T TIGR02259 325 AMKSSKPARI----NSTCTVFA--GAELRDRLAL-----GDKREDILAGLHRAIILRAISIISRSGG--ITDQFTFTGGV 391 (432)
T ss_pred HhcCCCCCCc----CCcceEEe--hHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHhcccC--CCCCEEEECCc
Confidence 6655432333 56677787 7889988886 4889999999999999999988766531 23589999999
Q ss_pred hhcHHHHHHHHHHHHhc--CCEEEEcCCCCCChHHHHHHHHH
Q 018903 267 GCNERLQEMMRTMCSER--GGRLFATDDRYCVDNGAMIAYTG 306 (349)
Q Consensus 267 a~N~~l~~~l~~~l~~~--g~~v~~~~~~~~~D~G~~iG~a~ 306 (349)
+.|..++..|++.+... +.+|++|+. ..-..+||+|.
T Consensus 392 A~N~gvv~aLe~~L~~~~~~~~V~Vp~~---pq~~GALGAAL 430 (432)
T TIGR02259 392 AKNEAAVKELRKLIKENYGEVQINIDPD---SIYTGALGASE 430 (432)
T ss_pred cccHHHHHHHHHHHccccCCCeEecCCC---ccHHHHHHHHH
Confidence 99999999999988532 357888773 22233455554
No 25
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=99.10 E-value=1.7e-07 Score=87.16 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=157.4
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~ 85 (349)
.+|||.++..+.+++.+.++++++....+ .+.+.+...+++..... +.+..|++|.|-+
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~~~~~----------------~~~~~~~~~l~~~~~~~----~~~~~i~~TGgGa- 60 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFKTFET----------------TNIDKFIEWLKNQIHRH----SRITTLCATGGGA- 60 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEEEeec----------------ccHHHHHHHHHHHHHhh----cCceEEEEECCcH-
Confidence 58999999999999996688888754221 12233334444333322 3577888886522
Q ss_pred CchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCC-----CCCeEEEEeCCeeEEEEEeCCcEEEEeecccchh
Q 018903 86 GAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGA-----EDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAV 160 (349)
Q Consensus 86 ~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~-----~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~~~S~ 160 (349)
..++..+...+++++..+....|-..+..+..+- .+|.+++--|..++++.+++.++++++.++...
T Consensus 61 -------~k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsGvSi~~v~~~~~~Rv~Gt~iGG- 132 (279)
T TIGR00555 61 -------FKFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTGTSILYVDGDNYERVGGTSLGG- 132 (279)
T ss_pred -------HHHHHHhccccCCcccchhHHHHHHHHHHHHhhcccCCCCCceEEEEecCCeEEEEEcCccEEEEcCccccH-
Confidence 2344444444456665667888888777655221 235333333766777777555788887766555
Q ss_pred hHHHHHHHhHcC-CCCCCCchhHHHHhhhhCCC-CCCCccc--------c----CCcee-echhHHHHHHHHHHHHcCCC
Q 018903 161 GNCLDRFARVLT-LSNDPSPGYNIEQLAKKGEK-FLDLPYV--------V----KGMDV-SFSGILSYIEATAAEKLNNN 225 (349)
Q Consensus 161 Gr~~Dava~lLG-l~~~~~eG~~le~lA~~g~~-~~~~~~~--------~----~~~~~-~f~~l~~~~~~~~~~~~~~~ 225 (349)
|-|+ -++++|. .. ++ .+|..||..|++ ...+... . .+..- +|. +...+ ..+.
T Consensus 133 GTf~-GL~~LL~~~~--~~--~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfG-------kv~~~-~~~~ 199 (279)
T TIGR00555 133 GTFL-GLGKLLTGIQ--TF--DELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFG-------KVLSK-HLDQ 199 (279)
T ss_pred HHHH-HHHHHHcCCC--CH--HHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccc-------hhhcc-cccc
Confidence 7777 5676764 33 24 467779988863 1111100 0 01111 122 11110 0112
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcc-chhcHHHHHHHHHHHHhcCCEEEEcC
Q 018903 226 ECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGG-VGCNERLQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 226 ~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGG-Va~N~~l~~~l~~~l~~~g~~v~~~~ 291 (349)
..+++|||+++..++...+..++.-..+.++.++|++.|| +..|..+++.+.+.+.-.+.++++|+
T Consensus 200 ~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~ 266 (279)
T TIGR00555 200 SFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLE 266 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEEC
Confidence 4779999999999999999999988888899999999999 78899999999998876667888876
No 26
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=98.85 E-value=8.8e-07 Score=82.55 Aligned_cols=233 Identities=19% Similarity=0.240 Sum_probs=128.3
Q ss_pred EEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcch-hhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec-C--
Q 018903 7 LGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPR-ETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR-G-- 82 (349)
Q Consensus 7 LgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~-~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~-g-- 82 (349)
||||.++..+.++|++.+|+++...... +..+. ....+-.+.+...+++++++.+.+..+++.+++.. |
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~-------~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG~~ 73 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGG-------GANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAGYG 73 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES--------TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeC-------CCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEeeec
Confidence 7999999999999999889988755321 11111 11122234567889999999999999999884332 1
Q ss_pred -CCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEe-CCcEEEEee--cccc
Q 018903 83 -PGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYS-EGRYRIFGE--TIDI 158 (349)
Q Consensus 83 -Pg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~-~g~~~~~~~--~~~~ 158 (349)
+.... + +.+.+... ++.. |..++.+ ++..-. .+-++++.|..+..+..+ +|+...++. .+-.
T Consensus 74 ~~~~~~--~----~~~~~~~~---~v~~--~~Da~~a--l~~~~~-~~giv~I~GTGS~~~~~~~~g~~~r~gG~G~~~g 139 (271)
T PF01869_consen 74 RAGDEQ--E----FQEEIVRS---EVIV--VNDAAIA--LYGATA-EDGIVVIAGTGSIAYGRDRDGRVIRFGGWGHCLG 139 (271)
T ss_dssp ETTTTT--H----HHHHHHHH---EEEE--EEHHHHH--HHHHST-SSEEEEEESSSEEEEEEETTSEEEEEEESCTTTT
T ss_pred Cccccc--c----hhhcceEE---EEEE--EHHHHHH--hCCCCC-CcEEEEEcCCCceEEEEEcCCcEEEeCCCCCCcC
Confidence 22111 1 11111111 4332 2233322 222111 357888888888777775 777777765 5667
Q ss_pred hhhHHHHHHHhHcCCCCCCCchhHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018903 159 AVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQE 238 (349)
Q Consensus 159 S~Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~ 238 (349)
--|.+|+...+.|.... ..++.+.... .|.-+. .+..+-.|+ ..+.....+ ....|..+-.
T Consensus 140 D~GSg~~ig~~~L~~~~-----~~~d~~~~~~--~~~~~~-~~~~~A~fa---~~v~~~a~~--------gd~~a~~Il~ 200 (271)
T PF01869_consen 140 DEGSGYWIGRRALRAVL-----RELDGRAEPT--PYAKPA-SNARIAVFA---PTVFEAAQQ--------GDEVARDILA 200 (271)
T ss_dssp TTTSHHHHHHHHHHHHH-----HHHTTSSTTS--HHHHTT--HHHHHCTH---HHHHHHHHT--------TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHhHHH-----HHhcCccccC--cccCCC-Chhheehhh---HHHHHHHHc--------CCchHHHHHH
Confidence 77888987777665431 1111111110 000000 011111233 222322221 2334444445
Q ss_pred HHHHHHHHHHHHHHHHcCCC--eEEEEccchhcHHHHHHHHHH
Q 018903 239 TLFAMLVEITERAMAHCDKK--DVLIVGGVGCNERLQEMMRTM 279 (349)
Q Consensus 239 ~l~~~l~~~~~~~~~~~~~~--~v~lsGGVa~N~~l~~~l~~~ 279 (349)
...+.|.+.+....++.... .|+++|||+.|..+.+.+.+.
T Consensus 201 ~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~ 243 (271)
T PF01869_consen 201 EAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDA 243 (271)
T ss_dssp HHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHH
Confidence 55566666666666665544 399999999998888777333
No 27
>PRK03011 butyrate kinase; Provisional
Probab=98.34 E-value=0.00025 Score=68.80 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=48.0
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeecc---CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYF---TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~---~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
|+||.||-++.+|.+|+++ |.+.++....... -+.+..+ ..+.+.=...|.+.|++.|+.++++++|+.-
T Consensus 2 ~~il~inpgststk~a~~~-~~~~~~~~~~~h~~~~~~~~~~~------~~q~~~r~~~i~~~l~~~g~~~~~l~av~~R 74 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFE-DEKPIFEETLRHSAEELEKFKTI------IDQYEFRKQAILDFLKEHGIDLSELDAVVGR 74 (358)
T ss_pred CEEEEEcCCCchheEEEEc-CCceeeeeccccCHHHHhcCCCc------cchHHHHHHHHHHHHHHcCCChhcceEEEEc
Confidence 7899999999999999999 7776665432211 0111111 1222233357889999999999999999655
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.18 E-value=0.0051 Score=57.30 Aligned_cols=237 Identities=13% Similarity=0.162 Sum_probs=127.0
Q ss_pred CcEEEEEecCCcceeEEEEEcCCeEEEeeeee-ccCCCCCCCcchhhhhhHHhhHHHHHHHHHH----HcCCCCCCCCEE
Q 018903 3 RMIALGFEGSANKIGVGVVTLDGSILSNPRHT-YFTPPGQGFLPRETAQHHLEHVLPLVKSALK----TAGITPDEIDCL 77 (349)
Q Consensus 3 ~m~iLgIdts~~~~sval~~~dg~i~~~~~~~-~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~----~~~i~~~did~I 77 (349)
..+++|||.++....+.+.+.+++++...... +-.+ .|.. . ..+....+|+++++ ..|. ++..+
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr--~G~i---~---di~~a~~~i~~~~~~ae~~~g~---~i~~v 91 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVR--DGIV---V---DFIGAVTIVRRLKATLEEKLGR---ELTHA 91 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccC--CCEE---e---eHHHHHHHHHHHHHHHHHHhCC---CcCeE
Confidence 45789999999888877777566654433211 1011 1221 1 12233345555554 3354 47778
Q ss_pred EEecCCCCCchhHHHHHHHHHHHhhcCCCeE-eeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEEEeecc
Q 018903 78 CYTRGPGMGAPLQVAAVVVRVLSQLWKKPIV-AVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETI 156 (349)
Q Consensus 78 a~~~gPg~~t~lr~g~~~ak~la~~~~~p~~-~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~ 156 (349)
+++. |..++... ...+. ......+.++. -+....|.+.+ + .++..+++++.|+.+.+..+.+|++... ...
T Consensus 92 ~~~v-p~~~~~~~-~~~~~-~~~~~aGl~~~~ii~e~~A~a~~-~---~~~~~~vvDIGggtt~i~v~~~g~~~~~-~~~ 163 (267)
T PRK15080 92 ATAI-PPGTSEGD-PRAII-NVVESAGLEVTHVLDEPTAAAAV-L---GIDNGAVVDIGGGTTGISILKDGKVVYS-ADE 163 (267)
T ss_pred EEEe-CCCCCchh-HHHHH-HHHHHcCCceEEEechHHHHHHH-h---CCCCcEEEEeCCCcEEEEEEECCeEEEE-ecc
Confidence 7765 54443211 11122 23334455554 45555555543 2 1223477888788777655566765432 222
Q ss_pred cchhhHHHHHHHhHcCCCCCCCchhHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 018903 157 DIAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSL 236 (349)
Q Consensus 157 ~~S~Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~ 236 (349)
+-.-.++=+.+++.|++. + ..-|.+-... ....+++ .+
T Consensus 164 ~~GG~~it~~Ia~~l~i~---~--~eAE~lK~~~------------------------------------~~~~~~~-~i 201 (267)
T PRK15080 164 PTGGTHMSLVLAGAYGIS---F--EEAEQYKRDP------------------------------------KHHKEIF-PV 201 (267)
T ss_pred cCchHHHHHHHHHHhCCC---H--HHHHHHHhcc------------------------------------CCHHHHH-HH
Confidence 222235556667777765 2 1112221100 0011111 12
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHH
Q 018903 237 QETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTG 306 (349)
Q Consensus 237 q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~ 306 (349)
...+.+.+++.+++..+....+.|+|+||.++...+.+.+.+.+ +.++.+++. -+-.+++|++-
T Consensus 202 i~~~~~~i~~~i~~~l~~~~~~~IvLtGG~s~lpgl~e~l~~~l---g~~v~~~~~---P~~~~a~Gaa~ 265 (267)
T PRK15080 202 VKPVVEKMASIVARHIEGQDVEDIYLVGGTCCLPGFEEVFEKQT---GLPVHKPQH---PLFVTPLGIAL 265 (267)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEECCcccchhHHHHHHHHh---CCCcccCCC---chHHHHHHHHh
Confidence 23334445556666666667889999999999999999999987 567766542 23456666654
No 29
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.003 Score=59.02 Aligned_cols=140 Identities=18% Similarity=0.207 Sum_probs=79.2
Q ss_pred CcEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 3 RMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 3 ~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
.|++||||.+...|.+.|.+.+|+++..-..-- .++ ...|. ..-..++..+|.+.+.++|+++++|+.+....+
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGp--AN~-~~~~~---e~A~~ni~~ai~~A~~~aG~~~~~i~~~~agla 77 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGP--ANI-QLVGK---EEAVRNIKDAIREALDEAGLKPDEIAAIVAGLA 77 (301)
T ss_pred ccEEEEEccCCcceEEEEEcCCCcEEEEeccCC--cee-cccch---HHHHHHHHHHHHHHHHhcCCCHHHhCceeeeee
Confidence 468999999999999999988899998653110 001 11121 223456778999999999999999998876654
Q ss_pred CCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEEEee
Q 018903 83 PGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGE 154 (349)
Q Consensus 83 Pg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~ 154 (349)
=....--.....+.+.+.... -+.|.|- ++.+ +...-.++.=++++.|..+-.|..++++..+++.
T Consensus 78 ~ag~~~~~~~~~~~~~l~~a~---~v~v~~D-g~iA--l~ga~~~~~Gii~i~GTGSi~~~~~gg~~~r~GG 143 (301)
T COG2971 78 LAGANVEEAREELERLLPFAG---KVDVEND-GLIA--LRGALGDDDGIIVIAGTGSIGYGRKGGRRERVGG 143 (301)
T ss_pred ccCcchhHHHHHHHHhcCccc---eEEEecC-hHHH--HhhccCCCCCEEEEecCCeEEEEEeCCeeEEecC
Confidence 222221112222222222222 1233443 4432 2222122334566666666556566677666654
No 30
>PRK00976 hypothetical protein; Provisional
Probab=97.71 E-value=0.013 Score=55.80 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcH--HHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHH-HHcC
Q 018903 237 QETLFAMLVEITERAMAHCDKKDVLIVGGVGCNE--RLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLA-FAHG 313 (349)
Q Consensus 237 q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~--~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~-~~~~ 313 (349)
-+.+.+.+...+..+..-.+.+.|+++|||+.+. .+.+++.+.+.. ++.. -++.+.++|+|.+.+ ...|
T Consensus 244 id~~~~~LA~~IAnLi~llDPe~IVLGGGVS~~~e~~L~~~I~e~l~~-------~~a~-LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 244 IDTLALFVAMEIASLLLLNPEDNVVLAGSVGEMDEPDVSERIKELLDK-------KVLV-LGKESAAIGLALIARDIFNG 315 (326)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcCccccCchhHHHHHHHHHhcc-------cccc-cCCchHHHHHHHHHHHHhCC
Confidence 3344444444444444556788999999999887 677778776532 1332 345556677765443 3344
Q ss_pred CC
Q 018903 314 SS 315 (349)
Q Consensus 314 ~~ 315 (349)
.+
T Consensus 316 ~~ 317 (326)
T PRK00976 316 KK 317 (326)
T ss_pred Cc
Confidence 44
No 31
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=97.70 E-value=0.028 Score=54.61 Aligned_cols=80 Identities=20% Similarity=0.240 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC-CCCChH--HHHHHH
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD-RYCVDN--GAMIAY 304 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~-~~~~D~--G~~iG~ 304 (349)
..+|+.+.+-+-.+..+++.+++.... .+.|+++||=+.|..|.++|++.+. +.+|..... ....|. ++++||
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~~~--~~~v~v~GGGa~N~~L~~~L~~~l~--~~~v~~~~~~gi~~~~~EA~aFA~ 333 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFPPQ--PDEVYVCGGGARNPFLMERLQERLP--GIPVKTTDELGIPPDAKEAMAFAW 333 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-TT---EEEEEESGGGG-HHHHHHHHHH-T--TCEEEEGGGGTS-CCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCC--CceEEEECCCcCCHHHHHHHHhhCC--CCEEecHHHcCCCHHHHHHHHHHH
Confidence 578998888777777777777665332 6799999999999999999999885 357766442 123444 899999
Q ss_pred HHHHHHH
Q 018903 305 TGLLAFA 311 (349)
Q Consensus 305 a~~~~~~ 311 (349)
.+++.+.
T Consensus 334 La~~~~~ 340 (364)
T PF03702_consen 334 LAYRRLN 340 (364)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 9998775
No 32
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.63 E-value=0.034 Score=52.76 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=67.3
Q ss_pred EEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCC
Q 018903 7 LGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMG 86 (349)
Q Consensus 7 LgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~ 86 (349)
||||.+.+...+++++.+|+++...+... + .....-.+.+...+++++++.++...++..|++.. ||..
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~---------~-~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~-pG~v 69 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPT---------D-TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGA-PGPV 69 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCC---------C-CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEec-cccc
Confidence 58999999999999998899987654321 1 11223355666788999998888778888888775 5432
Q ss_pred ---chh--------HHHHHHHHHHHhhcCCCeEeeccHHHHHHH
Q 018903 87 ---APL--------QVAAVVVRVLSQLWKKPIVAVNHCVAHIEM 119 (349)
Q Consensus 87 ---t~l--------r~g~~~ak~la~~~~~p~~~v~hh~aHa~s 119 (349)
++. .-+..+.+.|.+.+++|++-.|.-.+.|.+
T Consensus 70 d~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~ala 113 (318)
T TIGR00744 70 NRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALG 113 (318)
T ss_pred cCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHH
Confidence 111 012235566777889998765654444443
No 33
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=97.52 E-value=0.074 Score=52.77 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
..+++||++.-++++-...++++...+..+ ++.|-+=||-..|..|.+.....| +.+|..|. ....+++|+
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil---g~~V~Rp~----~~EtTAlGa 443 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL---GVPVERPV----VLETTALGA 443 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh---CCeeeccc----cchhhHHHH
Confidence 678999999999999999998888777776 578999999999999999999887 67887775 556688888
Q ss_pred HHHHHHHcCCCCCC
Q 018903 305 TGLLAFAHGSSTPL 318 (349)
Q Consensus 305 a~~~~~~~~~~~~~ 318 (349)
|...-+..|.-.++
T Consensus 444 A~lAGla~G~w~~~ 457 (499)
T COG0554 444 AYLAGLAVGFWKDL 457 (499)
T ss_pred HHHHhhhhCcCCCH
Confidence 87777777754444
No 34
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.50 E-value=0.051 Score=49.78 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=110.5
Q ss_pred EEecCCcceeEEEEEcCCeEEEeeeee-ccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcC-CCCCCCCEEEEecCCCC
Q 018903 8 GFEGSANKIGVGVVTLDGSILSNPRHT-YFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAG-ITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 8 gIdts~~~~sval~~~dg~i~~~~~~~-~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~-i~~~did~Ia~~~gPg~ 85 (349)
|||-+++...+.+++.+++-++..... +..+ .|..-+ .... ..+++++.+.+. .....+..++++. |..
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~~~~~~~~~--~g~I~d---~~~~---~~~l~~l~~~a~~~~g~~~~~vvisV-P~~ 71 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGVMQFADVVR--DGIVVD---FLGA---VEIVRRLKDTLEQKLGIELTHAATAI-PPG 71 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEEeccccccc--CCeEEE---hHHH---HHHHHHHHHHHHHHhCCCcCcEEEEE-CCC
Confidence 678888888887777555444433211 0001 132211 1222 234444443221 0112566676664 887
Q ss_pred Cchh-HHHHHHHHHHHhhcCCCe-EeeccHHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCCcEEEEeecccchhhH-
Q 018903 86 GAPL-QVAAVVVRVLSQLWKKPI-VAVNHCVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGN- 162 (349)
Q Consensus 86 ~t~l-r~g~~~ak~la~~~~~p~-~~v~hh~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g~~~~~~~~~~~S~Gr- 162 (349)
|+.. |-.. +..+...+..+ ..+..-.|.+.+ +. ...-+++++.|+.+.+..+..|.+..... ...-|+
T Consensus 72 ~~~~~r~a~---~~a~~~aGl~~~~li~ep~Aaa~~--~~--~~~~~vvDiGggtt~i~i~~~G~i~~~~~--~~~GG~~ 142 (239)
T TIGR02529 72 TIEGDPKVI---VNVIESAGIEVLHVLDEPTAAAAV--LQ--IKNGAVVDVGGGTTGISILKKGKVIYSAD--EPTGGTH 142 (239)
T ss_pred CCcccHHHH---HHHHHHcCCceEEEeehHHHHHHH--hc--CCCcEEEEeCCCcEEEEEEECCeEEEEEe--eecchHH
Confidence 7753 3221 12233334443 334555555543 21 12236777777776654445666543221 122333
Q ss_pred HHHHHHhHcCCCCCCCchhHHHHhhhhCCCCCCCccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 018903 163 CLDRFARVLTLSNDPSPGYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFA 242 (349)
Q Consensus 163 ~~Dava~lLGl~~~~~eG~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~ 242 (349)
+-+.+++.+++. + ...|.+-... . ..+.+.. ....+.+
T Consensus 143 it~~Ia~~~~i~---~--~~AE~~K~~~-----------~-------~~~~~~~-------------------~i~~~~~ 180 (239)
T TIGR02529 143 MSLVLAGAYGIS---F--EEAEEYKRGH-----------K-------DEEEIFP-------------------VVKPVYQ 180 (239)
T ss_pred HHHHHHHHhCCC---H--HHHHHHHHhc-----------C-------CHHHHHH-------------------HHHHHHH
Confidence 334556666654 2 1222221100 0 0011111 1122334
Q ss_pred HHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcC
Q 018903 243 MLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 243 ~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~ 291 (349)
.+.+.+++..++.+.+.|+|+||.++...+.+.+.+.+ +.+++++.
T Consensus 181 ~i~~~i~~~l~~~~~~~v~LtGG~a~ipgl~e~l~~~l---g~~v~~~~ 226 (239)
T TIGR02529 181 KMASIVKRHIEGQGVKDLYLVGGACSFSGFADVFEKQL---GLNVIKPQ 226 (239)
T ss_pred HHHHHHHHHHHhCCCCEEEEECchhcchhHHHHHHHHh---CCCcccCC
Confidence 45555666666778899999999999999999999887 57777654
No 35
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=97.41 E-value=0.13 Score=49.89 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHH
Q 018903 233 CYSLQETLFAMLVEITERAMAHC--DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAF 310 (349)
Q Consensus 233 A~~~q~~l~~~l~~~~~~~~~~~--~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~ 310 (349)
|..+-+.+.+.+...+..+.... +.+.|+++||++.|..+++.+.+.+... -+|++-|- .|.--+++..+++-+
T Consensus 268 A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~-a~v~~~pg---~~e~~ala~ga~rv~ 343 (351)
T TIGR02707 268 AKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFI-APVLVYPG---EDEMEALAEGALRVL 343 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhh-CCEEEeCC---cHHHHHHHHhHHHHh
Confidence 44444445555555555555556 6899999999999999999999988641 35666552 555666666666544
Q ss_pred HcCCC
Q 018903 311 AHGSS 315 (349)
Q Consensus 311 ~~~~~ 315 (349)
.|..
T Consensus 344 -~~~e 347 (351)
T TIGR02707 344 -RGEE 347 (351)
T ss_pred -cCCc
Confidence 4544
No 36
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=97.38 E-value=0.076 Score=51.57 Aligned_cols=233 Identities=22% Similarity=0.307 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec-----CCCCCchhHHHHHHHHHHHhhcC------------------CCeEeecc
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR-----GPGMGAPLQVAAVVVRVLSQLWK------------------KPIVAVNH 112 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~-----gPg~~t~lr~g~~~ak~la~~~~------------------~p~~~v~h 112 (349)
...+++++++++++++++||.|++-. .|..-..+.+|. +..||..++ .|++++-|
T Consensus 73 ~a~av~~~~~~~~l~~~~id~IgsHGQTv~H~P~~~~TlQiG~--~~~iA~~tgi~VV~DFR~~D~a~GGqGAPLvp~~~ 150 (365)
T PRK09585 73 FAEAVNALLAEAGLSPEDIDAIGSHGQTVRHRPGEGFTLQIGD--GALIAELTGITVVADFRRRDVAAGGQGAPLVPAFH 150 (365)
T ss_pred HHHHHHHHHHHcCCCccCccEEEeCCcccccCCCCCCeEEcCC--HHHHHHHHCcCEEecChHHHHhcCCCCCCchHHHH
Confidence 45688999999999999999999653 243111223322 123444444 45554444
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEeCCeeEEEEEeCC-cEEEEeecccchhhH-HHHHHHhHcCCCCCCCchhHHHHhhhhC
Q 018903 113 CVAHIEMGRIVTGAEDPVVLYVSGGNTQVIAYSEG-RYRIFGETIDIAVGN-CLDRFARVLTLSNDPSPGYNIEQLAKKG 190 (349)
Q Consensus 113 h~aHa~sa~~~s~~~~p~~l~i~gg~~~~~~~~~g-~~~~~~~~~~~S~Gr-~~Dava~lLGl~~~~~eG~~le~lA~~g 190 (349)
.. .+.++.+..+++-+ ||-..+-....+ . .++ -+|...|- +.|.+.+.++-..+.-+| + +|..|
T Consensus 151 ~~------Lf~~~~~~~~~lNi-GGIaNiT~l~~~~~-~~~--afDtGPgN~liD~~~~~~~~~~~D~~G-~---~A~~G 216 (365)
T PRK09585 151 QA------LFGHPDETRAVLNI-GGIANITLLPPGGG-PVI--GFDTGPGNALIDAWIQRHGGKPYDKDG-A---WAASG 216 (365)
T ss_pred HH------HhcCCCCceEEEec-CCceEEEEecCCCC-Cee--EecCChhHHHHHHHHHHHhCCCCCCCC-h---HHhCC
Confidence 31 12111111134444 442222222121 1 111 24666665 668888877543321112 1 23333
Q ss_pred C------------CCCCCcc--ccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018903 191 E------------KFLDLPY--VVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCD 256 (349)
Q Consensus 191 ~------------~~~~~~~--~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~ 256 (349)
+ +.|..+. ......|+ ...+.+.+... ..+.+|+.+.+-+-.++.|.+.+++.. ..
T Consensus 217 ~v~~~lL~~ll~~pff~~~pPKStgrE~F~----~~~~~~~l~~~----~~s~~D~~aTlt~~TA~sI~~~~~~~~--~~ 286 (365)
T PRK09585 217 KVDEALLARLLAHPYFALPPPKSTGRELFN----LAWLERQLAGF----GLSPEDVQATLTELTAASIARAVRRLP--PG 286 (365)
T ss_pred CCCHHHHHHHhcCccccCCCCCccChhhcC----HHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHhcc--CC
Confidence 2 3232221 11222232 22333344331 247899988888777777777775543 12
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC-CCCChH--HHHHHHHHHHHHHcCCCCCC
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD-RYCVDN--GAMIAYTGLLAFAHGSSTPL 318 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~-~~~~D~--G~~iG~a~~~~~~~~~~~~~ 318 (349)
.+.|+++||=+.|..|.++|++.+. .+|..... -...|. +.++||.+++.+. |....+
T Consensus 287 ~~~vlv~GGGa~N~~Lm~~L~~~l~---~~v~~~~~~G~~~da~EA~aFA~La~~~l~-g~p~~~ 347 (365)
T PRK09585 287 PDELLVCGGGARNPTLMERLAALLP---TEVATTDALGIDGDAKEALAFAWLAVRTLR-GLPGNL 347 (365)
T ss_pred CCEEEEECCCcchHHHHHHHHHhcC---CcccCHHHcCCChhHHHHHHHHHHHHHHHc-CCCCCC
Confidence 4579999999999999999998763 34554432 134565 8889999998776 554333
No 37
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=97.14 E-value=0.22 Score=46.28 Aligned_cols=276 Identities=14% Similarity=0.144 Sum_probs=137.1
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcch-hhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC-
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPR-ETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG- 82 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~-~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g- 82 (349)
.+|-|+-++..+.+++++ |.+.++........+.. +. .....+.+.=...+.+.+++.|+.+.++|+|+--.|
T Consensus 4 riltINPGststKlaVfe-~ek~ife~tlrhs~eEl----~~f~~i~dQ~~fR~~~i~~~i~e~g~~i~~~dAvvgRGGL 78 (358)
T COG3426 4 RILTINPGSTSTKLAVFE-DEKEIFEKTLRHSLEEL----EKFKRIPDQFEFRKDAILEFIDEQGYNISKFDAVVGRGGL 78 (358)
T ss_pred eEEEecCCCccceEEEec-CchHhhHHHhhcCHHHH----HHHhhhhHhHhHHHHHHHHHHHHhCCCcCCccceeecCcc
Confidence 489999999999999999 77777654221100000 00 000111111125688889999999999999985443
Q ss_pred ----CC-CC--------------ch---hHHHHHHHHHHHhhcCCCeEeec-----cH----------------HHHHHH
Q 018903 83 ----PG-MG--------------AP---LQVAAVVVRVLSQLWKKPIVAVN-----HC----------------VAHIEM 119 (349)
Q Consensus 83 ----Pg-~~--------------t~---lr~g~~~ak~la~~~~~p~~~v~-----hh----------------~aHa~s 119 (349)
|| -| .| -..|--+|+.++..+++|.+-|. .+ .-||+.
T Consensus 79 L~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~gvPayIVDPvvVDEm~~~Ar~SG~p~i~RkSiFHALN 158 (358)
T COG3426 79 LRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALGVPAYIVDPVVVDEMEDVARFSGIPEIERKSIFHALN 158 (358)
T ss_pred ccccCCceeEeCHHHHHHHHcCCCCcchhhhhHHHHHHHhhhcCCCeeeeCceehhhcchhhhhcCCccchhHHHHHHhh
Confidence 22 11 00 22445567788888888865443 11 112221
Q ss_pred ----h---hhhc--CCCCC-eEEEEeCCeeEEEEEeCCcEEEEeeccc------------chhhHHHHHHHhHcCCCCCC
Q 018903 120 ----G---RIVT--GAEDP-VVLYVSGGNTQVIAYSEGRYRIFGETID------------IAVGNCLDRFARVLTLSNDP 177 (349)
Q Consensus 120 ----a---~~~s--~~~~p-~~l~i~gg~~~~~~~~~g~~~~~~~~~~------------~S~Gr~~Dava~lLGl~~~~ 177 (349)
+ -.+. .+++- +++.--|+.+++-..++|++--.+...+ --+|.+.+.+ |+..
T Consensus 159 ~KAVarr~A~e~gk~yee~n~vVaHmGggiSV~ah~~GrvIDvnnaldgeGPfspersG~lP~~dlv~lc-----fSgk- 232 (358)
T COG3426 159 QKAVARRAAKEVGKRYEEMNIVVAHMGGGISVGAHKQGRVIDVNNALDGEGPFSPERSGTLPTGDLVRLC-----FSGK- 232 (358)
T ss_pred HHHHHHHHHHHhccchhhheEEEEeccCceEEEEecCCcEEeccCCCCCCCCCCcccCCCCChHHHHHHH-----hcCc-
Confidence 1 1111 12222 4555567767666667776533322111 1124444411 1100
Q ss_pred CchhHHHHhhhhCCCCCCCccccCCceeechhHHH--HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 018903 178 SPGYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILS--YIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMA-- 253 (349)
Q Consensus 178 ~eG~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~--~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~-- 253 (349)
|--.+|+.+-. | +++-+.+-|... .+.+.+.+ .+ .-|..+-++++-.+++.+.....
T Consensus 233 ~t~~El~k~i~-g----------~gG~~aylGT~d~~~v~~~~~~-----Gd---~~a~~~~~AmayQVaKeIG~~savL 293 (358)
T COG3426 233 YTEEELLKKIT-G----------KGGLVAYLGTNDAKEVERRIEQ-----GD---EKAKLAYEAMAYQVAKEIGAMSAVL 293 (358)
T ss_pred ccHHHHHHHhh-c----------CCceEEEeccchHHHHHHHHHc-----cc---HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 10012221111 1 222222322221 23332222 12 22333333344444444433322
Q ss_pred HcCCCeEEEEccchhcHHHHHHHHHHHHhcCC-EEEEcCCCCCChHHHHHHHHHHHHHHcCCCC
Q 018903 254 HCDKKDVLIVGGVGCNERLQEMMRTMCSERGG-RLFATDDRYCVDNGAMIAYTGLLAFAHGSST 316 (349)
Q Consensus 254 ~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~-~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~ 316 (349)
+..++.|+|+||.|.|..+..+|.++... + +|.+-| --|.=-+++..+. +...|...
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~--iapv~v~P---GE~EleALA~G~l-RVL~GeEk 351 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSW--IAPVIVYP---GEDELEALAEGAL-RVLRGEEK 351 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhh--hcceEecC---CchHHHHHHhhhH-HHhhcchh
Confidence 34578999999999999999999998752 3 555544 2444444554443 34445553
No 38
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.23 Score=47.06 Aligned_cols=103 Identities=29% Similarity=0.320 Sum_probs=67.0
Q ss_pred CCcEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhh-hhHHhhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 2 KRMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETA-QHHLEHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 2 ~~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~-~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
..|++||||-+.....+++++.+|+++...+... |.... ..-.+.+...++.++++.+ ...++-.|++.
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~---------~~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi~ 73 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPT---------PTPDPEEAILEAILALVAELLKQAQ-GRVAIIGIGIP 73 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEec---------CCCCchhHHHHHHHHHHHHHHHhcC-CcCceEEEEec
Confidence 3578999999999999999998899987665431 11111 2345677788899988765 22234444443
Q ss_pred cCCCCCch-----------hHHHHHHHHHHHhhcCCCeEeeccHHH
Q 018903 81 RGPGMGAP-----------LQVAAVVVRVLSQLWKKPIVAVNHCVA 115 (349)
Q Consensus 81 ~gPg~~t~-----------lr~g~~~ak~la~~~~~p~~~v~hh~a 115 (349)
+||.... .+....+++.|...+++|+.--+--.|
T Consensus 74 -~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~ 118 (314)
T COG1940 74 -GPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANA 118 (314)
T ss_pred -cceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHH
Confidence 5765422 222244678899999999865444333
No 39
>PRK09698 D-allose kinase; Provisional
Probab=96.98 E-value=0.33 Score=45.66 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=64.9
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
++||||-+.....+++++.+|+++...+... |......-.+.+...+++++++.+ .++..|++.. ||
T Consensus 5 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~---------~~~~~~~~~~~l~~~i~~~~~~~~---~~i~gigia~-pG 71 (302)
T PRK09698 5 VVLGIDMGGTHIRFCLVDAEGEILHCEKKRT---------AEVIAPDLVSGLGEMIDEYLRRFN---ARCHGIVMGF-PA 71 (302)
T ss_pred EEEEEEcCCcEEEEEEEcCCCCEEEEEEeCC---------ccccchHHHHHHHHHHHHHHHHcC---CCeeEEEEeC-Cc
Confidence 4799999999999999998899987654321 111111125666778888888764 4677887765 44
Q ss_pred CC---ch-------h----HHHHHHHHHHHhhcCCCeEeeccHHHHHH
Q 018903 85 MG---AP-------L----QVAAVVVRVLSQLWKKPIVAVNHCVAHIE 118 (349)
Q Consensus 85 ~~---t~-------l----r~g~~~ak~la~~~~~p~~~v~hh~aHa~ 118 (349)
.+ ++ + .-+..+.+.|...+++|++..+.-.+.+.
T Consensus 72 ~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~ 119 (302)
T PRK09698 72 LVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLL 119 (302)
T ss_pred ceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHH
Confidence 32 11 1 11234566788888999877665555443
No 40
>PRK09557 fructokinase; Reviewed
Probab=96.97 E-value=0.34 Score=45.63 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=56.5
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~ 85 (349)
+||||-+.....+++++.+|+++...+... |......-.+.+...+++.+++. ..+..|+++. ||.
T Consensus 2 ~lgidig~t~~~~~l~d~~g~i~~~~~~~~---------~~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~-pG~ 67 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGEELFRKRLPT---------PRDDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI-PGS 67 (301)
T ss_pred EEEEEECCCcEEEEEECCCCCEEEEEEecC---------CCCCHHHHHHHHHHHHHHHHhhc----CCceEEEecC-ccc
Confidence 699999999999999998899987654321 11111111222333344443322 2456676654 443
Q ss_pred C---ch--------hHHHHHHHHHHHhhcCCCeEeeccHHHHHHH
Q 018903 86 G---AP--------LQVAAVVVRVLSQLWKKPIVAVNHCVAHIEM 119 (349)
Q Consensus 86 ~---t~--------lr~g~~~ak~la~~~~~p~~~v~hh~aHa~s 119 (349)
. ++ ..-+..+.+.|.+.++.|++-.+--.|.|.+
T Consensus 68 vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~a 112 (301)
T PRK09557 68 ISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVS 112 (301)
T ss_pred CcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHH
Confidence 2 11 1122345566777889998766655555544
No 41
>PLN02920 pantothenate kinase 1
Probab=96.89 E-value=0.49 Score=46.17 Aligned_cols=205 Identities=14% Similarity=0.176 Sum_probs=114.6
Q ss_pred CCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcC----------------------CCC
Q 018903 71 PDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTG----------------------AED 128 (349)
Q Consensus 71 ~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~----------------------~~~ 128 (349)
..++..|.+|.| |. ..++..+...+++++..+.+..|-...+.+.-. ..+
T Consensus 94 ~~~~~~i~~TGG-GA-------~k~~~~~~~~~~i~~~k~DEm~~li~Gl~fLl~~~~~e~f~y~~~~~~~~~~~~~~ly 165 (398)
T PLN02920 94 THDKNFIKATGG-GA-------YKFADLFKEKLGISLDKEDEMDCLVTGANFLLKAVHHEAFTYLDGQKEFVQIDHNDLY 165 (398)
T ss_pred CCCceEEEEECC-cH-------HHHHHHHHhhhCCCceeecHHHHHHHHHHHHHhhCCcceeEeccCcccccccCccccC
Confidence 356788888865 32 223444445566676677888888777644410 123
Q ss_pred CeEEEEeCCeeEEEEEe-CCcEEEEeecccchh--hHHHHHHHhHc-CCCCCCCchhHHHHhhhhCCC-CCCCcccc--C
Q 018903 129 PVVLYVSGGNTQVIAYS-EGRYRIFGETIDIAV--GNCLDRFARVL-TLSNDPSPGYNIEQLAKKGEK-FLDLPYVV--K 201 (349)
Q Consensus 129 p~~l~i~gg~~~~~~~~-~g~~~~~~~~~~~S~--Gr~~Dava~lL-Gl~~~~~eG~~le~lA~~g~~-~~~~~~~~--~ 201 (349)
|.+|+=-|-.+.++.++ .+++++++.+ |+ |-|+- .+++| |.. +| .+|-.||..|++ ...+.... .
T Consensus 166 PyLLVNIGSGVSilkV~~~~~~~RVgGT---sIGGGT~~G-L~~LLtg~~--sf--dEll~lA~~Gd~~nvDllVgDIYG 237 (398)
T PLN02920 166 PYLLVNIGSGVSMIKVDGDGKFERVSGT---SVGGGTFWG-LGKLLTKCK--SF--DELLELSHQGNNRVIDMLVGDIYG 237 (398)
T ss_pred ceEEEEcCCCEEEEEEeCCCcEEEEccc---ccchHhHHH-HHHHHcCCC--CH--HHHHHHHhCCCccccCceeccccC
Confidence 44444445556666653 3477777653 44 33444 45444 433 35 466678888864 22221100 0
Q ss_pred CceeechhHHH-----HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcH-HHHHH
Q 018903 202 GMDVSFSGILS-----YIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNE-RLQEM 275 (349)
Q Consensus 202 ~~~~~f~~l~~-----~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~-~l~~~ 275 (349)
+.+..-.|+.. .+-++.....+....+.+|||+++...+...+..++-...+.+++++|+++|..-.|. .....
T Consensus 238 g~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~~~ik~Ivf~G~fir~~~~tm~~ 317 (398)
T PLN02920 238 GMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRGHSYTMDT 317 (398)
T ss_pred CCCCCCCCCCccceeeccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccCcHHHHHH
Confidence 00000001110 0011111000012356899999999999999999999999999999999999966665 44432
Q ss_pred HH---HHHHhcCCEEEEcC
Q 018903 276 MR---TMCSERGGRLFATD 291 (349)
Q Consensus 276 l~---~~l~~~g~~v~~~~ 291 (349)
|. +.......+.++++
T Consensus 318 ls~a~~fwS~g~~ka~FLr 336 (398)
T PLN02920 318 ISVAVHFWSKGEAKAMFLR 336 (398)
T ss_pred HHHHHHHhccCceeEEEec
Confidence 32 22333455766655
No 42
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.83 E-value=0.45 Score=44.86 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCE----EEEcCCCCCChHHHHHHHHHH
Q 018903 232 LCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGR----LFATDDRYCVDNGAMIAYTGL 307 (349)
Q Consensus 232 iA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~----v~~~~~~~~~D~G~~iG~a~~ 307 (349)
.|..+-+...+.+...+..+...++.+.|+|.||++....+.+.+++.+.+.-+. +-+-+. ..++.+..+|++..
T Consensus 221 ~a~~~~~~~~~~la~~l~n~~~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s-~~~~~a~~~GAa~~ 299 (303)
T PRK13310 221 QAVAHVERYLDLLAICLGNILTIVDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKA-RHGDAGGVRGAAFL 299 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEc-ccCchHHHHhHHHH
Confidence 3444444455556666666666788999999999987777778888877653221 111111 25666677887764
No 43
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.26 Score=47.37 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEc-CCCCCChH--HHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFAT-DDRYCVDN--GAMIA 303 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~-~~~~~~D~--G~~iG 303 (349)
.+.+|+++.+-+..+..|++.+. ......++++++||=..|.++.++|...+. |.+|... +.-..+|. +.+++
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~--~~~~~p~~l~vcGGG~~N~llm~rLa~l~~--g~~V~~t~~~g~~gd~~EA~afA 338 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVA--TLQGDPRRLVVCGGGRRNPLLMARLAALLE--GVEVATTDEAGLDGDAVEAEAFA 338 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh--hccCCCceeEeecCCccCHHHHHHHHHhcC--CCeeeechhcCCCcchhhHHHHH
Confidence 57889988888888888877776 335678899999999999999999999875 6666553 34567787 78889
Q ss_pred HHHHHHHHcCCC
Q 018903 304 YTGLLAFAHGSS 315 (349)
Q Consensus 304 ~a~~~~~~~~~~ 315 (349)
|+++.. .+|..
T Consensus 339 ~LA~r~-l~g~P 349 (371)
T COG2377 339 WLAWRT-LEGLP 349 (371)
T ss_pred HHHHHH-HhCCC
Confidence 999876 55765
No 44
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.76 E-value=0.021 Score=50.16 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAH--CDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~--~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
....++++++.+.++-.+.+.++.+.+. ..++.|.++||.+.|..+++.+...+ +.+|.+++ .+.+.++|+
T Consensus 118 ~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl---~~~V~~~~----~~e~~a~Ga 190 (198)
T PF02782_consen 118 TTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL---GRPVVRPE----VEEASALGA 190 (198)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH---TSEEEEES----SSTHHHHHH
T ss_pred cCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh---CCceEeCC----CCchHHHHH
Confidence 4579999999999999999998888776 44689999999999999999999987 67898886 255666676
Q ss_pred HHHH
Q 018903 305 TGLL 308 (349)
Q Consensus 305 a~~~ 308 (349)
|.+.
T Consensus 191 A~~A 194 (198)
T PF02782_consen 191 ALLA 194 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 45
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=96.56 E-value=0.72 Score=44.51 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=107.7
Q ss_pred CCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcC-C------------------------
Q 018903 72 DEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTG-A------------------------ 126 (349)
Q Consensus 72 ~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~-~------------------------ 126 (349)
.....|.+|.| |. ..++..+...+++++..+.+.+|...+..+... .
T Consensus 82 ~~~~~I~aTGG-GA-------~Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~~~~~~~ 153 (341)
T PF03630_consen 82 QKITKICATGG-GA-------FKYADLFKEKLGVEVQKEDEMECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEKVPIDNS 153 (341)
T ss_dssp GCSSEEEEEST-TH-------HHHHCHHHCTSTSEEEE--HHHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EEEEETTS
T ss_pred ccceEEEEeCC-cH-------HHHHHHHHHhcCCCeeEehHHHHHHhhHHHHHhcCCcceEEEecCCCcceecccccCCC
Confidence 46677888854 32 335555666777777777777777776533211 0
Q ss_pred -CCCeEEEEeCCeeEEEEE-eCCcEEEEeecccchhhHHHHHHHhHc-CCCCCCCchhHHHHhhhhCCC-CCCC------
Q 018903 127 -EDPVVLYVSGGNTQVIAY-SEGRYRIFGETIDIAVGNCLDRFARVL-TLSNDPSPGYNIEQLAKKGEK-FLDL------ 196 (349)
Q Consensus 127 -~~p~~l~i~gg~~~~~~~-~~g~~~~~~~~~~~S~Gr~~Dava~lL-Gl~~~~~eG~~le~lA~~g~~-~~~~------ 196 (349)
.+|.+|+--|-.+.++.+ ..+.++.++.+ .-.=|-|+. .+++| |.. +| .++..||..|+. ...+
T Consensus 154 ~~~PyllvniGsGvSi~~v~~~~~~~rvgGs-~iGGgT~~G-L~~llt~~~--~~--~e~~~la~~G~~~~vDllV~DIy 227 (341)
T PF03630_consen 154 DIYPYLLVNIGSGVSILKVEGPNQFERVGGS-SIGGGTFWG-LCSLLTGCK--SF--DEILELAKKGDNSNVDLLVGDIY 227 (341)
T ss_dssp S-SSEEEEEESSSEEEEEEEETTEEEEEEEE-S-SHHHHHH-HHHHHH-----SH--HHHHHHHHH--GGGTSEEHHHHH
T ss_pred CCCcEEEEEcCCceEEEEEeCCCceEEEecc-ccchHhHHH-HHHHhcCCC--CH--HHHHHHhcCCCccccCceeeecc
Confidence 123344444555666665 44567777663 112233444 44444 654 24 466678888863 1111
Q ss_pred -------ccccCCceeechhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhc
Q 018903 197 -------PYVVKGMDVSFSGILSYIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCN 269 (349)
Q Consensus 197 -------~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N 269 (349)
+++.+..--+|..+...-. . ......+|+|+++...+...+..++....+.+++++|+++|....|
T Consensus 228 g~~y~~~~L~~~~~AssFGk~~~~~~----~---~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~~~~I~f~G~~~~~ 300 (341)
T PF03630_consen 228 GGDYNKIGLPGDLTASSFGKVQSKAK----R---KDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHGVKRIVFGGSFIRN 300 (341)
T ss_dssp SS-BGGGTB-TTSEEETTCCGGSHHH----H----CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEEESGGGTS
T ss_pred CCCcccCCCCHHHHHhhhhhhhhccc----c---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccccC
Confidence 1111111113332221100 0 1246789999999999999999999999999999999999998866
Q ss_pred H-HHHHHHH---HHHHhcCCEEEEcC
Q 018903 270 E-RLQEMMR---TMCSERGGRLFATD 291 (349)
Q Consensus 270 ~-~l~~~l~---~~l~~~g~~v~~~~ 291 (349)
. .....|. +.......+.+++.
T Consensus 301 ~~~~~~~l~~a~~~~s~~~~~~~fl~ 326 (341)
T PF03630_consen 301 NPITMRTLSYAINFWSKGELKALFLR 326 (341)
T ss_dssp SCHHHHHHHHHHHHHTTTS-EEEEET
T ss_pred CHHHHHHHHHHHHHhccCCceEEEec
Confidence 4 4455555 33333456776664
No 46
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=96.42 E-value=1.2 Score=46.97 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcC
Q 018903 256 DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHG 313 (349)
Q Consensus 256 ~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~ 313 (349)
.++.|+|.||.+.-..+.+.|.+.+.. .++.. ....|.++++|+|.+.....+
T Consensus 332 ~i~~ViLvGGssriP~v~~~i~~~f~~--~~~~~---~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 332 SVHEVVLVGGSTRIPKVQSLIKDFFNG--KEPCK---SINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred HCcEEEEECCCCCChhHHHHHHHHhCC--CCCCC---CCCcchHHhhhhhhhHHHhcC
Confidence 367999999999999999999987631 12221 135588999999877666554
No 47
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=96.39 E-value=0.86 Score=42.63 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCC--EEEEcCCCCCChHHHHHHHHHH
Q 018903 233 CYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGG--RLFATDDRYCVDNGAMIAYTGL 307 (349)
Q Consensus 233 A~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~--~v~~~~~~~~~D~G~~iG~a~~ 307 (349)
|..+.+...+.+...+..+....+.+.|+++|+++.+..+.+++++.+.+... ++-+-+. ..++.+..+|++.+
T Consensus 210 a~~~~~~~~~~la~~l~~l~~~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s-~~~~~~~~~GAa~~ 285 (291)
T PRK05082 210 AQALINRSAQAIARLIADLKATLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAA-HYRHDAGLLGAALW 285 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEEC-ccCCchhhhhHHHH
Confidence 33344444555555555555667889999999998888888888888765321 1111111 23455567787765
No 48
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.33 E-value=0.82 Score=41.81 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=46.6
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEee-eeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNP-RHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~-~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
|..+|||-++.-.+.|+++.|+.+.+.. |.+ . ++-++ -.+++++=+++++.++|||.|+.|++
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~~~~Fklgrae-----------~---~~~~e--k~~L~~l~de~~i~l~eidlialtYs 66 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEKDPEFKLGRAE-----------L---RKVAE--KSLLRELEDEARIALEEIDLIALTYS 66 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCCCceEEechhh-----------h---hhhhH--HHHHHHhhHhhCCccccceEEEEeec
Confidence 6689999999999999999667666643 111 1 11111 14577777888999999999999886
Q ss_pred CC
Q 018903 83 PG 84 (349)
Q Consensus 83 Pg 84 (349)
-|
T Consensus 67 MG 68 (332)
T COG4020 67 MG 68 (332)
T ss_pred cc
Confidence 54
No 49
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=95.99 E-value=1.8 Score=42.60 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCCeEEEEccch-hcHHHHHHHHHHHHhcCCE
Q 018903 256 DKKDVLIVGGVG-CNERLQEMMRTMCSERGGR 286 (349)
Q Consensus 256 ~~~~v~lsGGVa-~N~~l~~~l~~~l~~~g~~ 286 (349)
+++.|+++||++ ....+++++.+.+...|++
T Consensus 327 ~vDaiVFTGGIGEns~~vr~~i~~~l~~lGi~ 358 (404)
T TIGR00016 327 NLDAIVFTGGIGENAATVRELVLEALEFLGFE 358 (404)
T ss_pred CCCEEEEcCccccCCHHHHHHHHhhhhhcCce
Confidence 389999999999 6778999999988766654
No 50
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=95.92 E-value=0.032 Score=50.98 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=54.4
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeecc-CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTYF-TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~~-~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
++||||.++..+.++|++.+|+++...+.... .....|.. ......-.+.+...+++++++++....+|.+|+++.
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~-e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~ 77 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWA-EQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISG 77 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEE-EE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeecccccccc-ccChHHHHHHHHHHHHHHHhhcCcccceeEEEEecc
Confidence 58999999999999999999999987643321 11111221 223334556677789999999988889999999875
No 51
>PLN02902 pantothenate kinase
Probab=95.77 E-value=1.1 Score=47.88 Aligned_cols=204 Identities=14% Similarity=0.122 Sum_probs=114.8
Q ss_pred CCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcC----------------------CCCCe
Q 018903 73 EIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTG----------------------AEDPV 130 (349)
Q Consensus 73 did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~----------------------~~~p~ 130 (349)
++..|.+|.| |.|. +...+...+++++..+..+.|-..++.+... ..+|.
T Consensus 145 ~~~~i~aTGG-GA~K-------~~~~~~~~l~~~l~k~DEm~~li~Gl~fLl~~i~~e~f~~~~~~~~~~~~~~~~lyPy 216 (876)
T PLN02902 145 GNGVIKATGG-GAYK-------FADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGEKEFVQIDQNDLFPY 216 (876)
T ss_pred CceEEEEeCC-cccc-------HHHHHHHHhCCCeeeecHHHHHHHHHHHHHhhCcchheeeccccccccccCccCCCce
Confidence 4567777754 5432 5555666677888888888887777644410 11344
Q ss_pred EEEEeCCeeEEEEEe-CCcEEEEeecccchh--hHHHHHHHhHcCCCCCCCchhHHHHhhhhCCC-CCCCcccc--CCce
Q 018903 131 VLYVSGGNTQVIAYS-EGRYRIFGETIDIAV--GNCLDRFARVLTLSNDPSPGYNIEQLAKKGEK-FLDLPYVV--KGMD 204 (349)
Q Consensus 131 ~l~i~gg~~~~~~~~-~g~~~~~~~~~~~S~--Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~~-~~~~~~~~--~~~~ 204 (349)
+|+=-|-.++++.++ .++++.++.+ |+ |-|+.-..-++|.. +| .+|-.||..|++ .+.+.... .+.+
T Consensus 217 LLVNIGSGVSilkV~~~~~~~RVgGT---sIGGGT~~GL~~LLtg~~--sF--dEll~LA~~Gd~~~vDllVgDIYGg~~ 289 (876)
T PLN02902 217 LLVNIGSGVSMIKVDGDGKFERVSGT---NVGGGTYWGLGRLLTKCK--SF--DELLELSQRGDNSAIDMLVGDIYGGMD 289 (876)
T ss_pred EEEEcCCceEEEEEecCCcEEEeccc---ccccHhHHHHHHHHcCCC--CH--HHHHHHHhcCCccccCeeeccccCCCC
Confidence 444445556666653 3478777653 44 34454433444544 35 466678988864 22221110 0001
Q ss_pred eechhHHH-----HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhc-HHHHHHHHH
Q 018903 205 VSFSGILS-----YIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCN-ERLQEMMRT 278 (349)
Q Consensus 205 ~~f~~l~~-----~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N-~~l~~~l~~ 278 (349)
+.-.|+.. .+-+...+.+.....+.+|||+++...+...+..++....+.+++++|+++|.--.| ......|..
T Consensus 290 y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~~~ikrIvF~G~fIr~h~~tm~~ls~ 369 (876)
T PLN02902 290 YSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISF 369 (876)
T ss_pred cCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecceecCCcchHHHHHH
Confidence 10011111 111111110011235689999999999999999999999999999999999996544 333333333
Q ss_pred HH---HhcCCEEEEcC
Q 018903 279 MC---SERGGRLFATD 291 (349)
Q Consensus 279 ~l---~~~g~~v~~~~ 291 (349)
.+ .....+.+++.
T Consensus 370 Ai~fwSkg~~~a~Flr 385 (876)
T PLN02902 370 AVHFWSKGEAQAMFLR 385 (876)
T ss_pred HHHHhcCCceEEEEec
Confidence 22 22234666654
No 52
>PRK07157 acetate kinase; Provisional
Probab=95.74 E-value=2.3 Score=41.82 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=26.9
Q ss_pred CCCeEEEEccchhcHH-HHHHHHHHHHhcCCE
Q 018903 256 DKKDVLIVGGVGCNER-LQEMMRTMCSERGGR 286 (349)
Q Consensus 256 ~~~~v~lsGGVa~N~~-l~~~l~~~l~~~g~~ 286 (349)
+++.|+++||++-|+. +++++.+.+...|++
T Consensus 320 ~vDaiVFTgGIGen~~~vr~~i~~~l~~lGi~ 351 (400)
T PRK07157 320 KIDAIVFTAGVGENSAFVRELVINKINIPNIK 351 (400)
T ss_pred CCCEEEECCccccCcHHHHHHHHhhccccceE
Confidence 4999999999999999 999999988765543
No 53
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=95.71 E-value=2 Score=42.28 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=41.7
Q ss_pred EEEEEecCCcceeEEEEEcC-CeEEEeeeeeccCCC--------CCCCc--chhhhhhHHhhHHHHHHHHHHHc--CCCC
Q 018903 5 IALGFEGSANKIGVGVVTLD-GSILSNPRHTYFTPP--------GQGFL--PRETAQHHLEHVLPLVKSALKTA--GITP 71 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~d-g~i~~~~~~~~~~~~--------~~g~~--p~~~~~~h~~~l~~~i~~~L~~~--~i~~ 71 (349)
+||.||+++.+++.+|++.+ .+++.....+++..+ .++-. ......+|...+ ..+-+.|++. ...+
T Consensus 1 KILVIN~GSSS~Kfalf~~~~~~~l~~g~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~il~~L~~~~~~~~~ 79 (388)
T PF00871_consen 1 KILVINPGSSSTKFALFDMDSGEVLASGLVERIGSPDSEILHKVSGGQKEQEPTIIDQHEYAL-EAILDFLKEHGIGFDL 79 (388)
T ss_dssp EEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTSTTHEEEEEECTTEEEEEESTSCSHHHHH-HHHHHHHHHTTSTTCG
T ss_pred CEEEEcCChHhheeeeEECCCCCeeeechheeccCCcceeeeecCCCcccccccCCCCHHHHH-HHHHHHHHhcCCcccc
Confidence 68999999999999999943 455543222221000 00100 011122344443 3455555653 4456
Q ss_pred CCCCEEEEec
Q 018903 72 DEIDCLCYTR 81 (349)
Q Consensus 72 ~did~Ia~~~ 81 (349)
++|++|+.-.
T Consensus 80 ~~i~AVghRv 89 (388)
T PF00871_consen 80 EEIDAVGHRV 89 (388)
T ss_dssp GGEEEEEEEE
T ss_pred CceeEEEEee
Confidence 8999998554
No 54
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=95.66 E-value=3.3 Score=43.14 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHc-----CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 244 LVEITERAMAHC-----DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 244 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
+.+.+..+++.. .++.|+|.||.+....+.+.+.+.+. .+++.+ .-.|.+++.|+|.+.....+.
T Consensus 295 i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~---~~~~~~---~npdeaVA~GAai~a~~l~~~ 364 (599)
T TIGR01991 295 TLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG---QEPLTD---IDPDQVVALGAAIQADLLAGN 364 (599)
T ss_pred HHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhC---CCCCCC---CCCcHHHHHHHHHHHHHhccc
Confidence 344444444443 36789999999999999999998763 233222 345889999998776665544
No 55
>PRK10331 L-fuculokinase; Provisional
Probab=95.28 E-value=0.096 Score=52.76 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHH
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHC--DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYT 305 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~--~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a 305 (349)
.+.++++++.+.++-.+.+.++.+.+.. .++.|.++||-+.|..+++.+...+ |.+|.++. ...+.++|+|
T Consensus 359 ~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pV~~~~----~~e~~a~GaA 431 (470)
T PRK10331 359 TRGHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML---DIPIKVLD----DAETTVAGAA 431 (470)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc---CCeeEecC----cccchHHHHH
Confidence 5789999999999888888888776543 3678999999999999999999876 67887665 2245677887
Q ss_pred HHHHHHcCCCCCCcc
Q 018903 306 GLLAFAHGSSTPLEE 320 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~ 320 (349)
.+..+..|..+++++
T Consensus 432 ~la~~~~G~~~~~~~ 446 (470)
T PRK10331 432 MFGWYGVGEFSSPEQ 446 (470)
T ss_pred HHHHHhcCCCCCHHH
Confidence 777777787766543
No 56
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.18 E-value=0.11 Score=52.93 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcC
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~ 291 (349)
...++++++.+.++-.+...+..+.+..+ .+.|.++||-+.|...++.+...+ |.+|.+++
T Consensus 371 ~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w~Qi~Ad~~---g~~v~~~~ 433 (502)
T COG1070 371 TRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADAL---GLPVVVPE 433 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHHHHHHHHHHc---CCeeEecC
Confidence 45788888888888888877777776545 457999999999999999999876 68888876
No 57
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.17 E-value=0.073 Score=54.00 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
....++++++.+.++-.+.+.++.+.+..+ .+.|.++||.+.|..+++.+...+ |.+|.++. ...+.++|+
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~----~~e~~a~Ga 444 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL---GVPVERPV----VAETTALGA 444 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh---CCeeEecC----cccchHHHH
Confidence 346899999999999888888877765434 678999999999999999999876 67887654 233567788
Q ss_pred HHHHHHHcCCCCCC
Q 018903 305 TGLLAFAHGSSTPL 318 (349)
Q Consensus 305 a~~~~~~~~~~~~~ 318 (349)
|....+..|....+
T Consensus 445 A~~A~~~~G~~~~~ 458 (498)
T PRK00047 445 AYLAGLAVGFWKDL 458 (498)
T ss_pred HHHHhhhcCcCCCH
Confidence 87777777766544
No 58
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.03 E-value=0.15 Score=51.34 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
....++++++.+.++-.+...++.+.+..+ +++|.++||.+.|..+++.+...+ |.+|.++. ...+.++|+
T Consensus 359 ~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~---g~pv~~~~----~~e~~a~Ga 431 (481)
T TIGR01312 359 TTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF---GTPVDVPE----GEEGPALGA 431 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh---CCceeecC----CCcchHHHH
Confidence 347899999999999888888887765433 578999999999999999999886 67777765 223557777
Q ss_pred HHHHHHHcCCCCCCc
Q 018903 305 TGLLAFAHGSSTPLE 319 (349)
Q Consensus 305 a~~~~~~~~~~~~~~ 319 (349)
|.+..+..|....++
T Consensus 432 A~~a~~~~g~~~~~~ 446 (481)
T TIGR01312 432 AILAAWALGEKDLAA 446 (481)
T ss_pred HHHHHHhcCCCCCHH
Confidence 777777777655443
No 59
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.99 E-value=0.15 Score=51.83 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
....++++++.+.++-.+...++.+.+..+ .+.|.++||-+.|..+++.+...+ |.+|.++.. ..+.++|+
T Consensus 375 ~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~---g~pV~~~~~----~e~~alGa 447 (504)
T PTZ00294 375 TTRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL---GKDIVVPEM----AETTALGA 447 (504)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh---CCceEecCc----ccchHHHH
Confidence 357899999999999888888877765434 578999999999999999999876 678877652 22456777
Q ss_pred HHHHHHHcCCCCCCcc
Q 018903 305 TGLLAFAHGSSTPLEE 320 (349)
Q Consensus 305 a~~~~~~~~~~~~~~~ 320 (349)
|.+..+..|...++++
T Consensus 448 Al~aa~a~G~~~~~~~ 463 (504)
T PTZ00294 448 ALLAGLAVGVWKSLEE 463 (504)
T ss_pred HHHHHhhcCccCCHHH
Confidence 7777677777655543
No 60
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=94.87 E-value=0.25 Score=38.05 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=54.6
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCC
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGP 83 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gP 83 (349)
|.+||||-+.....+|+++.+|+++...... ... ....+...+.+++++. +++.|++. -|
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~-----------~~~---~~~~~~~~l~~~i~~~-----~~~~i~Ig-~p 60 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDETGKLADPLEVI-----------PRT---NKEADAARLKKLIKKY-----QPDLIVIG-LP 60 (99)
T ss_pred CcEEEEccCCCeEEEEEECCCCCEecCEEEE-----------Eec---CcchHHHHHHHHHHHh-----CCCEEEEe-CC
Confidence 4689999999999999998788887644321 100 1123445677777653 57889887 46
Q ss_pred CCCchhHH---HHHHHHHHHhhcCCCeEeec
Q 018903 84 GMGAPLQV---AAVVVRVLSQLWKKPIVAVN 111 (349)
Q Consensus 84 g~~t~lr~---g~~~ak~la~~~~~p~~~v~ 111 (349)
|.-.+... -..+.+.|...+++|++.++
T Consensus 61 g~v~g~~~~~~~~~l~~~l~~~~~~pv~~~n 91 (99)
T smart00732 61 LNMNGTASRETEEAFAELLKERFNLPVVLVD 91 (99)
T ss_pred cCCCCCcCHHHHHHHHHHHHHhhCCcEEEEe
Confidence 65433100 03444556666677776554
No 61
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.76 E-value=0.15 Score=51.89 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCcEEEEEecCCcceeEEEEEcCCeEEEeeeeecc-CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCC--CCCEE
Q 018903 1 MKRMIALGFEGSANKIGVGVVTLDGSILSNPRHTYF-TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPD--EIDCL 77 (349)
Q Consensus 1 m~~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~-~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~--did~I 77 (349)
|+ ++||||.++..+.++|++.+|++++..+.... .....|.. ......-.+.+...+++++++.+...+ +|.+|
T Consensus 1 ~~--~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~-eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aI 77 (504)
T PTZ00294 1 MK--YIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWL-EHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAI 77 (504)
T ss_pred Cc--EEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeE-eeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEE
Confidence 65 68999999999999999989999986644321 11111221 122223355566678888888877666 79999
Q ss_pred EEec
Q 018903 78 CYTR 81 (349)
Q Consensus 78 a~~~ 81 (349)
+++.
T Consensus 78 gis~ 81 (504)
T PTZ00294 78 GITN 81 (504)
T ss_pred Eeec
Confidence 8775
No 62
>PRK00047 glpK glycerol kinase; Provisional
Probab=94.71 E-value=0.2 Score=50.87 Aligned_cols=75 Identities=23% Similarity=0.420 Sum_probs=53.4
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeec--cCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTY--FTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~--~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
++||||.++..+.++|++.+|++++....+- .... .|.. ......-.+.+...+++++++++++.++|.+|+++.
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~-~g~~-e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~ 82 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQ-PGWV-EHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITN 82 (498)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCC-CCeE-eeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEec
Confidence 6899999999999999998999998753221 1111 1211 112233456677889999999888888899998775
No 63
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.70 E-value=0.14 Score=52.18 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHH
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYT 305 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a 305 (349)
.+.++++++.+.++-.+...++.+.+..+ ++.|.++||-+.|..+++.+...+ |.+|.+++. .+ +.++|+|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~~---~e-~~alGaA 451 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVT---GLPVKVPVV---KE-ATALGCA 451 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhc---CCeeEEecc---cC-chHHHHH
Confidence 46889999988888877777777655334 578999999999999999998876 678877662 22 3456666
Q ss_pred HHHHHHcCCCCCC
Q 018903 306 GLLAFAHGSSTPL 318 (349)
Q Consensus 306 ~~~~~~~~~~~~~ 318 (349)
.+..+..|...++
T Consensus 452 ~lA~~~~G~~~~~ 464 (520)
T PRK10939 452 IAAGVGAGIYSSL 464 (520)
T ss_pred HHHHHHhCCCCCH
Confidence 6666666665443
No 64
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.57 E-value=0.28 Score=49.45 Aligned_cols=86 Identities=17% Similarity=0.281 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
....++++++.+.++-.+...++.+.+..+ .+.|.++||.+.|..+++.+...+ |.+|...+ . .+.++|.
T Consensus 344 ~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~----~-ea~alGa 415 (471)
T PRK10640 344 ESDAELARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC---GIRVIAGP----V-EASTLGN 415 (471)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh---CCCeeeCC----h-hHHHHHH
Confidence 478999999999999988888888866434 578999999999999999999887 67774432 2 3668899
Q ss_pred HHHHHHHcCCCCCCcc
Q 018903 305 TGLLAFAHGSSTPLEE 320 (349)
Q Consensus 305 a~~~~~~~~~~~~~~~ 320 (349)
+....+..|...++++
T Consensus 416 a~~a~~a~G~~~~~~~ 431 (471)
T PRK10640 416 IGIQLMTLDELNNVDD 431 (471)
T ss_pred HHHHHHHcCCcCCHHH
Confidence 8888888888766543
No 65
>PRK12440 acetate kinase; Reviewed
Probab=94.50 E-value=5.3 Score=39.25 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHH-HHHHHHHHHHhcCC
Q 018903 235 SLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNER-LQEMMRTMCSERGG 285 (349)
Q Consensus 235 ~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~-l~~~l~~~l~~~g~ 285 (349)
.|.+.+.+.+..++..+ .+++.|+++||++-|+. +++++.+.+...|+
T Consensus 302 ~f~yri~k~Ig~~~a~l---~gvDaiVFTgGIGen~~~vr~~i~~~l~~lg~ 350 (397)
T PRK12440 302 VFTYRVAKYIASYLAAL---DSLDGIIFTGGIGENSLPIRREILKNLKLLGF 350 (397)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCEEEECCccccCcHHHHHHHHhhhhhhce
Confidence 34444444444444333 47999999999999999 99999998875443
No 66
>PRK15027 xylulokinase; Provisional
Probab=94.46 E-value=0.25 Score=49.89 Aligned_cols=86 Identities=22% Similarity=0.297 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHH
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYT 305 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a 305 (349)
...++++++.+.++-.+...++.+.+ .+ .++|.++||.+.|...++.+...+ |.+|.+.+ ..+.+.++|+|
T Consensus 357 ~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pv~~~~---~~~~~~a~GaA 429 (484)
T PRK15027 357 GPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSEYWRQMLADIS---GQQLDYRT---GGDVGPALGAA 429 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEeCcccCCHHHHHHHHHHh---CCeEEeec---CCCcchHHHHH
Confidence 47899999999999888888877654 34 568999999999999999998876 67876544 23445678888
Q ss_pred HHHHHHcCCCCCCcc
Q 018903 306 GLLAFAHGSSTPLEE 320 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~ 320 (349)
.+..+..|...++++
T Consensus 430 ~lA~~~~G~~~~~~~ 444 (484)
T PRK15027 430 RLAQIAANPEKSLIE 444 (484)
T ss_pred HHHHHhcCCcCCHHH
Confidence 777788888766554
No 67
>PTZ00297 pantothenate kinase; Provisional
Probab=94.41 E-value=8.6 Score=44.24 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcc-chhcHHHHHHHHHHHHh---cCCEEEEcC
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGG-VGCNERLQEMMRTMCSE---RGGRLFATD 291 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGG-Va~N~~l~~~l~~~l~~---~g~~v~~~~ 291 (349)
.+.+|||+++...+...+..++-...+.+++++|+++|. +-.|......|.....- ...+.++..
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~ 1430 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLE 1430 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEec
Confidence 568999999999999999999999999999999999999 66677776666554432 245666644
No 68
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.40 E-value=0.23 Score=50.50 Aligned_cols=85 Identities=12% Similarity=0.098 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHH
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYT 305 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a 305 (349)
...++++++.+.++-.+...+..+.+..+ ++.|.++||-+.|..+++.+...+ |.+|.++.. ..+.++|+|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pv~~~~~----~e~~a~GaA 443 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIF---EQEIVVPES----YESSCLGAC 443 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHc---CCeeEecCC----CCcchHHHH
Confidence 46899999999888887777776655444 578999999999999999999876 678877652 224567777
Q ss_pred HHHHHHcCCCCCCc
Q 018903 306 GLLAFAHGSSTPLE 319 (349)
Q Consensus 306 ~~~~~~~~~~~~~~ 319 (349)
.+..+..|...+++
T Consensus 444 ~la~~~~G~~~~~~ 457 (505)
T TIGR01314 444 ILGLKALGLIEDFS 457 (505)
T ss_pred HHHHHhcCccCCHH
Confidence 77777777765543
No 69
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.40 E-value=0.26 Score=49.74 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHC--DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~--~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
.+..+||+++-++++-.+-+++....+.. +++++.+.||.+.|..+.+.....+ |.+|..|+. .|. +++|+
T Consensus 383 ts~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~---g~pv~~p~~---~e~-~~~Ga 455 (516)
T KOG2517|consen 383 TSKEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL---GLPVVRPQD---VEA-VALGA 455 (516)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh---CCccccccc---hhH-HHHHH
Confidence 46789999998888888888887776665 5789999999999999999999886 678777763 444 55666
Q ss_pred HHHHHHHcCC
Q 018903 305 TGLLAFAHGS 314 (349)
Q Consensus 305 a~~~~~~~~~ 314 (349)
|.......|.
T Consensus 456 A~l~~~a~~~ 465 (516)
T KOG2517|consen 456 AMLAGAASGK 465 (516)
T ss_pred HHHHHhhcCC
Confidence 6555555555
No 70
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=94.08 E-value=0.32 Score=49.28 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
....++++++.+.++-.+...++.+.+.++ ++.|.++||-+.|..+++.+...+ |.+|.++.. ..+.++|+
T Consensus 368 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~---g~pv~~~~~----~e~~alGa 440 (493)
T TIGR01311 368 TTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL---GVPVVRPKV----TETTALGA 440 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc---CCeeEecCC----CcchHHHH
Confidence 357899999999999888888877765434 578999999999999999999876 678877542 23456777
Q ss_pred HHHHHHHcCCCCCCc
Q 018903 305 TGLLAFAHGSSTPLE 319 (349)
Q Consensus 305 a~~~~~~~~~~~~~~ 319 (349)
|....+..|...+++
T Consensus 441 A~~a~~~~G~~~~~~ 455 (493)
T TIGR01311 441 AYAAGLAVGYWKSLE 455 (493)
T ss_pred HHHHHhhcCcCCCHH
Confidence 777777777765544
No 71
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=93.81 E-value=0.35 Score=48.65 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHC--DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~--~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
....++++++.+.++-.+.+.++.+.+.. .++.|.++||-+.|..+++.+...+ +.+|.++. +..+.++|+
T Consensus 362 ~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~----~~e~~~lGa 434 (465)
T TIGR02628 362 TTRGHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANML---DIPVKVVD----DAETTVAGA 434 (465)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhc---CCeeEecc----CCcchHHHH
Confidence 35789999999999988888887776542 3678999999999999999998876 67887665 234567888
Q ss_pred HHHHHHHcCCCCCCc
Q 018903 305 TGLLAFAHGSSTPLE 319 (349)
Q Consensus 305 a~~~~~~~~~~~~~~ 319 (349)
|.+..+..|....++
T Consensus 435 A~~a~~a~G~~~~~~ 449 (465)
T TIGR02628 435 AMFGFYGVGEYNSPE 449 (465)
T ss_pred HHHHHHhcCccCCHH
Confidence 888778888765554
No 72
>PLN02669 xylulokinase
Probab=93.74 E-value=0.47 Score=48.93 Aligned_cols=99 Identities=17% Similarity=0.295 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC-CCCChHHHHHHHHH
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD-RYCVDNGAMIAYTG 306 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~-~~~~D~G~~iG~a~ 306 (349)
+..++++++.+.++-.+...+..+......++|.++||.+.|...++.+...+ +.+|+++.. ..+.=+++++|..+
T Consensus 417 ~~~~~~RAvlEg~a~~~r~~~~~l~~~~~~~~i~~~GGgs~s~~w~Qi~ADVl---g~pV~~~~~~ea~alGAA~~A~~~ 493 (556)
T PLN02669 417 DPPSEVRAIIEGQFLSMRAHAERFGMPVPPKRIIATGGASANQSILKLIASIF---GCDVYTVQRPDSASLGAALRAAHG 493 (556)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcChhcCHHHHHHHHHHc---CCCeEecCCCCchHHHHHHHHHHH
Confidence 46677777777766666555555532224678999999999999999999887 567777652 22334445555556
Q ss_pred HHHHHcCCCCCCcccccccCccCc
Q 018903 307 LLAFAHGSSTPLEESTFTQRFRTD 330 (349)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~ 330 (349)
+...+++...+.++ .+.|.|...
T Consensus 494 ~~~~~~~~~~~~~~-~~~~~~~~~ 516 (556)
T PLN02669 494 WLCNEQGSFVPISC-LYEGKLEAT 516 (556)
T ss_pred HhhhhhcccCChhh-hcccccccC
Confidence 65555554455543 445666553
No 73
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=93.49 E-value=0.29 Score=50.28 Aligned_cols=81 Identities=21% Similarity=0.210 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHH
Q 018903 230 ADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGL 307 (349)
Q Consensus 230 ~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~ 307 (349)
.++.+++.+.++-.+.+.+..+.+ .+ ++.|.++||.+.|...++.+...+ +.+|.++. .. .+.++|+|.+
T Consensus 416 ~~~~rAvlEgiaf~~r~~~e~l~~-~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~---~~-e~~alGaA~l 487 (541)
T TIGR01315 416 ALLYYATMEFIAYGTRQIVEAMNT-AGHTIKSIFMSGGQCQNPLLMQLIADAC---DMPVLIPY---VN-EAVLHGAAML 487 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEecCcccCHHHHHHHHHHH---CCeeEecC---hh-HHHHHHHHHH
Confidence 567788888888777777766654 34 578999999999999999999887 67887765 23 3557787777
Q ss_pred HHHHcCCCCCC
Q 018903 308 LAFAHGSSTPL 318 (349)
Q Consensus 308 ~~~~~~~~~~~ 318 (349)
..+..|...++
T Consensus 488 A~~~~G~~~~~ 498 (541)
T TIGR01315 488 GAKAAGTTESL 498 (541)
T ss_pred HHHhcCccCCH
Confidence 66667765444
No 74
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=93.48 E-value=7 Score=37.25 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=79.6
Q ss_pred CeEEEEeCCeeEEEEE-eCCcEEEEeecccchh--hHHHHHHHhHcCCCCCCCchhHHHHhhhhCCCC-CCCccc-cCCc
Q 018903 129 PVVLYVSGGNTQVIAY-SEGRYRIFGETIDIAV--GNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKF-LDLPYV-VKGM 203 (349)
Q Consensus 129 p~~l~i~gg~~~~~~~-~~g~~~~~~~~~~~S~--Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~~~-~~~~~~-~~~~ 203 (349)
|..|+=-|-.-+++.+ ..+++++++. +|+ |-|+. ..++|-=+. +| .+|..+|..|++. +..-.. +-+.
T Consensus 175 PyLLVNIGSGVSIlkV~~~~~feRvgG---sSlGGGTf~G-L~~LLTg~~-sf--dE~LelA~~Gd~~~vD~LV~DIYGg 247 (371)
T KOG2201|consen 175 PYLLVNIGSGVSILKVDGPDNFERVGG---SSLGGGTFLG-LGSLLTGCK-SF--DELLELASRGDNRNVDMLVRDIYGG 247 (371)
T ss_pred ceEEEEcCCCeEEEEEecCCceeEecc---cccCCcchhh-hHhHhcCCC-CH--HHHHHHHhcCCCchhhhhhhhccCc
Confidence 3333333434445554 4456766644 466 34554 444553332 35 3555689888752 211110 0011
Q ss_pred eeechhHH-----HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHH
Q 018903 204 DVSFSGIL-----SYIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRT 278 (349)
Q Consensus 204 ~~~f~~l~-----~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~ 278 (349)
+.+=-|++ +.+-+...+ +++...+++|||.+.-.++..-+-+++.......++++|++.|=--.|.....++..
T Consensus 248 ~y~~fGL~~~~iASSFGk~~~~-eK~~~~s~eDia~SlL~mIsnNIGqiAyl~A~~~ni~rV~FgG~fiR~~~itM~tLs 326 (371)
T KOG2201|consen 248 DYSRFGLKGDLIASSFGKVIRK-EKELSVSKEDIARSLLRMISNNIGQIAYLCALNENIKRVYFGGFFIRGHPITMKTLS 326 (371)
T ss_pred cHhhcCCChhHHHHHHHHHhhc-ccccccChHHHHHHHHHHHHhhHHHHHHHHHHHhCccEEEEeeeEEecCceehHHHH
Confidence 11101121 222222222 123347789999999999999999999999999999999987766566555555543
No 75
>PLN02295 glycerol kinase
Probab=93.36 E-value=0.32 Score=49.59 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHC-------DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNG 299 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~-------~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G 299 (349)
....++++++.+.++-.+.+.++.+.+.. .++.|.++||.+.|..+++.+...+ |.+|.++.. ..+
T Consensus 376 ~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~---g~pV~~~~~----~e~ 448 (512)
T PLN02295 376 TNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL---GSPVVRPAD----IET 448 (512)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc---CCceEecCc----ccc
Confidence 45789999999999988888888775541 3578999999999999999999876 678876552 234
Q ss_pred HHHHHHHHHHHHcCCC
Q 018903 300 AMIAYTGLLAFAHGSS 315 (349)
Q Consensus 300 ~~iG~a~~~~~~~~~~ 315 (349)
.++|+|....+..|..
T Consensus 449 ~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 449 TALGAAYAAGLAVGLW 464 (512)
T ss_pred HHHHHHHHHHhhcCcC
Confidence 5566665555555544
No 76
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=93.28 E-value=0.47 Score=48.47 Aligned_cols=76 Identities=16% Similarity=0.289 Sum_probs=53.6
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeee--ccC-CCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHT--YFT-PPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~--~~~-~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
++||||.++..+.++|++.+|++++....+ +.. ....|.. +.....-.+.+...++++++++++..++|.+|+++.
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~-Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s~ 82 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSM-EFDLEKNWQLACQCIRQALQKAGIPASDIAAVSATS 82 (520)
T ss_pred EEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCe-eECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEC
Confidence 699999999999999999999999876332 110 1111211 112233456677788889988888888899999874
No 77
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=93.19 E-value=1 Score=37.54 Aligned_cols=93 Identities=24% Similarity=0.295 Sum_probs=56.7
Q ss_pred CCCcEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 1 MKRMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 1 m~~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
|..|.+||||-+...+++|+.+..+.+ +.-... .+.. .. ......+..++++. +++.|++.
T Consensus 1 ~~~~~iLalD~G~kriGvAv~d~~~~~-a~pl~~---------i~~~---~~-~~~~~~l~~~i~~~-----~i~~iVvG 61 (138)
T PRK00109 1 MPSGRILGLDVGTKRIGVAVSDPLGGT-AQPLET---------IKRN---NG-TPDWDRLEKLIKEW-----QPDGLVVG 61 (138)
T ss_pred CCCCcEEEEEeCCCEEEEEEecCCCCE-EcCEEE---------EEcC---CC-chHHHHHHHHHHHh-----CCCEEEEe
Confidence 457889999999999999999844444 322111 1111 00 11234566666654 47889886
Q ss_pred cCC----CCCch-hHHHHHHHHHHHhhcCCCeEeeccH
Q 018903 81 RGP----GMGAP-LQVAAVVVRVLSQLWKKPIVAVNHC 113 (349)
Q Consensus 81 ~gP----g~~t~-lr~g~~~ak~la~~~~~p~~~v~hh 113 (349)
. | |..+. -+.-..|++.|...+++|++.++..
T Consensus 62 l-P~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr 98 (138)
T PRK00109 62 L-PLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDER 98 (138)
T ss_pred c-cCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3 4 22211 1233467888888789999888643
No 78
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=93.03 E-value=0.41 Score=48.51 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=53.2
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeec-cCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTY-FTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~-~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
++||||.++..+.++|++.+|++++..+... ...+..|.. ......-.+.+...++++++++++++++|.+|+++.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~-e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~ 78 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWV-EHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITN 78 (493)
T ss_pred eEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcE-eeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEec
Confidence 5899999999999999998999998664321 111111211 112233466677788999999888888899998765
No 79
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=93.00 E-value=9 Score=36.88 Aligned_cols=42 Identities=10% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHc-CCCeEEEEccchhcHHHHHHHHHHHHh
Q 018903 241 FAMLVEITERAMAHC-DKKDVLIVGGVGCNERLQEMMRTMCSE 282 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~-~~~~v~lsGGVa~N~~l~~~l~~~l~~ 282 (349)
.+.+++.+..++... +.+.|+|||-++-|.-+.+.+.+.+.+
T Consensus 244 ~E~i~k~V~~l~~~~~~~~~IilSGr~~~~~~~~~~l~~~l~~ 286 (343)
T PF07318_consen 244 IESIVKAVASLLASVPDPDEIILSGRFSRIPEFRKKLEDRLED 286 (343)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 333344444444434 567799999999999999999998865
No 80
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=92.81 E-value=14 Score=38.55 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=40.2
Q ss_pred cCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcC
Q 018903 255 CDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHG 313 (349)
Q Consensus 255 ~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~ 313 (349)
..++.|+|.||.+.-..+.+.+.+.+ +.+++.+. -.|.+++.|+|.+.....+
T Consensus 307 ~~Id~ViLvGGssriP~v~~~l~~~f---~~~~~~~~---npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 307 PNIDGVILVGGATRIPLIKDELYKAF---KVDILSDI---DPDKAVVWGAALQAENLIA 359 (595)
T ss_pred ccCcEEEEECCcccChhHHHHHHHHh---CCCceecC---CchHHHHHHHHHHHHHhhC
Confidence 35789999999999999999999876 34444332 3588999999877666544
No 81
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=92.80 E-value=0.41 Score=49.12 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccc-hhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGV-GCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIA 303 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGV-a~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG 303 (349)
....++++++.+.++-.+...++.+.+ .+ +++|.++||- +.|..+++.+...+ |.+|.++.. .+ +.++|
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~---g~pV~~~~~---~e-~~a~G 476 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMIMETFTD-SGVPVEELMAAGGIARKNPVIMQIYADVT---NRPLQIVAS---DQ-APALG 476 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEeCCccccCHHHHHHHHHhh---CCeeEeccC---Cc-chhHH
Confidence 346899999999988887777777654 34 5789999999 99999999888876 678877752 23 45677
Q ss_pred HHHHHHHHcCCCCCCc
Q 018903 304 YTGLLAFAHGSSTPLE 319 (349)
Q Consensus 304 ~a~~~~~~~~~~~~~~ 319 (349)
+|.+..+..|...+++
T Consensus 477 aA~lA~~~~G~~~~~~ 492 (536)
T TIGR01234 477 AAIFAAVAAGVYADIP 492 (536)
T ss_pred HHHHHHHHcCCcCCHH
Confidence 7777777777664443
No 82
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=92.66 E-value=0.73 Score=39.70 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=20.6
Q ss_pred cEEEEEecCCcceeEEEEEcCCe
Q 018903 4 MIALGFEGSANKIGVGVVTLDGS 26 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~ 26 (349)
|.|||||-+...++.++++.+|+
T Consensus 2 m~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred CEEEEEccccCceeEEEEEecCC
Confidence 89999999999999999986665
No 83
>PRK04123 ribulokinase; Provisional
Probab=92.65 E-value=0.57 Score=48.12 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccc-hhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGV-GCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGV-a~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
...++++++.+.++-.+.+.++.+.+ .+ +++|.++||. +.|..+++.+...+ |.+|.++.. ..+.++|+
T Consensus 409 ~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~---g~pV~~~~~----~e~~alGa 480 (548)
T PRK04123 409 DAPDIYRALIEATAFGTRAIMECFED-QGVPVEEVIAAGGIARKNPVLMQIYADVL---NRPIQVVAS----DQCPALGA 480 (548)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCcccCHHHHHHHHHhc---CCceEecCc----cccchHHH
Confidence 46899999999998888777777654 34 5789999999 99999999998876 677866652 23456677
Q ss_pred HHHHHHHcCCCCCCc
Q 018903 305 TGLLAFAHGSSTPLE 319 (349)
Q Consensus 305 a~~~~~~~~~~~~~~ 319 (349)
|....+..|...+++
T Consensus 481 A~lA~~~~G~~~~~~ 495 (548)
T PRK04123 481 AIFAAVAAGAYPDIP 495 (548)
T ss_pred HHHHHHHhccCCCHH
Confidence 766666666654443
No 84
>PRK04123 ribulokinase; Provisional
Probab=92.59 E-value=0.56 Score=48.18 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=51.4
Q ss_pred EEEEEecCCcceeEEEEEc-CCeEEEeeeeeccCC-------CCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCE
Q 018903 5 IALGFEGSANKIGVGVVTL-DGSILSNPRHTYFTP-------PGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDC 76 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~-dg~i~~~~~~~~~~~-------~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~ 76 (349)
++||||.++..+.++|++. +|++++......... +..|.. +.....-.+.+...++++++++++..++|.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~-Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~a 82 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQA-LQHPLDYIESLEAAIPAVLKEAGVDPAAVVG 82 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCce-eeCHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 5899999999999999994 999998763321100 111211 1111122455666888889888888888999
Q ss_pred EEEec
Q 018903 77 LCYTR 81 (349)
Q Consensus 77 Ia~~~ 81 (349)
|+++.
T Consensus 83 Igis~ 87 (548)
T PRK04123 83 IGVDF 87 (548)
T ss_pred EEEec
Confidence 99886
No 85
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=92.49 E-value=0.87 Score=46.69 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=52.7
Q ss_pred EEEEEecCCcceeEEEEE-cCCeEEEeeeeecc-------CCCC-----CCCcchhhhhhHHhhHHHHHHHHHHHcCCCC
Q 018903 5 IALGFEGSANKIGVGVVT-LDGSILSNPRHTYF-------TPPG-----QGFLPRETAQHHLEHVLPLVKSALKTAGITP 71 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~-~dg~i~~~~~~~~~-------~~~~-----~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~ 71 (349)
++||||.++..+.++|++ .+|++++....... ..+. .|.. +.....-.+.+...++++++++++..
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~-Eqdp~~~w~~~~~~~~~~~~~~~~~~ 80 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQA-LQHPADYIEVLEAAIPTVLAELGVDP 80 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 589999999999999999 89999986643210 0110 1111 11222335566678888999988887
Q ss_pred CCCCEEEEec
Q 018903 72 DEIDCLCYTR 81 (349)
Q Consensus 72 ~did~Ia~~~ 81 (349)
++|.+|+++.
T Consensus 81 ~~I~aI~~s~ 90 (536)
T TIGR01234 81 ADVVGIGVDF 90 (536)
T ss_pred HHEEEEEEec
Confidence 8899999886
No 86
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=92.45 E-value=0.85 Score=45.70 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHH
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHC--DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAY 304 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~--~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~ 304 (349)
..+.++.+++.+.++-.+.+.++.+.+.. .++.|.++||-+.|..+++.+...+ |.+|..+ . ..+.++|.
T Consensus 356 ~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~----~-~e~~a~Ga 427 (454)
T TIGR02627 356 ESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADAC---GIRVIAG----P-VEASTLGN 427 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHh---CCceEcC----C-chHHHHHH
Confidence 45789999999999888877777776533 3678999999999999999999887 6777432 2 23668898
Q ss_pred HHHHHHHcCCCCCCcc
Q 018903 305 TGLLAFAHGSSTPLEE 320 (349)
Q Consensus 305 a~~~~~~~~~~~~~~~ 320 (349)
|....+..|...++++
T Consensus 428 A~~a~~~~G~~~~~~~ 443 (454)
T TIGR02627 428 IGVQLMALDEINDMAA 443 (454)
T ss_pred HHHHHHhcCCcCCHHH
Confidence 8888888888766644
No 87
>PLN02295 glycerol kinase
Probab=91.98 E-value=1 Score=45.91 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=52.6
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeecc-CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCC----CCEEEE
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTYF-TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDE----IDCLCY 79 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~~-~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~d----id~Ia~ 79 (349)
++||||.++..+.++|++.+|++++....... ..+..|.. +.....-.+.+..++++++++++++.++ |.+|++
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~-Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~ 79 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWV-EHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGI 79 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcE-eeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEE
Confidence 47999999999999999989999986533211 11112321 1222334566677888999998888777 688887
Q ss_pred ec
Q 018903 80 TR 81 (349)
Q Consensus 80 ~~ 81 (349)
+.
T Consensus 80 s~ 81 (512)
T PLN02295 80 TN 81 (512)
T ss_pred ec
Confidence 76
No 88
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=91.83 E-value=0.44 Score=39.64 Aligned_cols=89 Identities=22% Similarity=0.382 Sum_probs=56.3
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCC
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGP 83 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gP 83 (349)
|.+||||-+...+++|+.+ ....++.-... + +.. ........+..++++- .++.|++.. |
T Consensus 1 mriL~lD~G~kriGiAvsd-~~~~~a~pl~~-i--------~~~----~~~~~~~~l~~li~~~-----~i~~iVvGl-P 60 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSD-PLGIIASPLET-I--------PRR----NREKDIEELKKLIEEY-----QIDGIVVGL-P 60 (135)
T ss_dssp -EEEEEEECSSEEEEEEEE-TTTSSEEEEEE-E--------EEC----CCCCCHHHHHHHHHHC-----CECEEEEEE-E
T ss_pred CeEEEEEeCCCeEEEEEec-CCCCeEeeeEE-E--------ECC----CCchHHHHHHHHHHHh-----CCCEEEEeC-C
Confidence 7899999999999999999 44443322110 0 000 0012234577777764 578999875 3
Q ss_pred ----CCCch-hHHHHHHHHHHHhhc-CCCeEeecc
Q 018903 84 ----GMGAP-LQVAAVVVRVLSQLW-KKPIVAVNH 112 (349)
Q Consensus 84 ----g~~t~-lr~g~~~ak~la~~~-~~p~~~v~h 112 (349)
|..+. -+.-..|++.|+..+ ++|++.++.
T Consensus 61 ~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DE 95 (135)
T PF03652_consen 61 LNMDGSESEQARRVRKFAEELKKRFPGIPVILVDE 95 (135)
T ss_dssp BBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred cccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 33222 344567888899888 999988864
No 89
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=91.65 E-value=1.6 Score=44.39 Aligned_cols=80 Identities=18% Similarity=0.342 Sum_probs=56.4
Q ss_pred CCCcEEEEEecCCcceeEEEEEcC-CeEEEeeeeecc-CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEE
Q 018903 1 MKRMIALGFEGSANKIGVGVVTLD-GSILSNPRHTYF-TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLC 78 (349)
Q Consensus 1 m~~m~iLgIdts~~~~sval~~~d-g~i~~~~~~~~~-~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia 78 (349)
|+.+++||||.++..+.+.|++.+ |++++..+.+.. ..+..|. .+..-..-.+.+...++++++++.+..++|.+|+
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~-~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~ 79 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGW-AEQDPDELWQAILEALRQLLEESKIDPDAIAAIG 79 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCC-cccCHHHHHHHHHHHHHHHHHhcccChhhceEEE
Confidence 555689999999999999999988 788876654321 1111122 1222233455677789999999888889999997
Q ss_pred Eec
Q 018903 79 YTR 81 (349)
Q Consensus 79 ~~~ 81 (349)
++.
T Consensus 80 is~ 82 (502)
T COG1070 80 ISG 82 (502)
T ss_pred Eec
Confidence 765
No 90
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=91.64 E-value=0.8 Score=46.56 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=50.8
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeecc--CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTYF--TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~~--~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
++||||.++..+.++|++.+|++++....+.. ..+. |.. ......-.+.+...+++++++.+.+ ++|.+|+++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~-g~~-e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~ 76 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPAS-GMA-EENPEEIFEAVLVTIREVSINLEDE-DEILFVSFST 76 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCC-CCe-eeCHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEec
Confidence 37999999999999999989999987643211 1111 111 1222334556677888888877766 7899999875
No 91
>PRK15027 xylulokinase; Provisional
Probab=91.52 E-value=0.82 Score=46.23 Aligned_cols=73 Identities=8% Similarity=0.149 Sum_probs=46.7
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeecc-CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYF-TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~-~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+||||.++..+.++|++.+|++++....... .....|.. ......-.+.+...++.++++. ..++|.+|+++.
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~-eqd~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~ 75 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWS-EQDPEQWWQATDRAMKALGDQH--SLQDVKALGIAG 75 (484)
T ss_pred EEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCcc-ccCHHHHHHHHHHHHHHHHHhC--CccceeEEEEec
Confidence 7999999999999999988999987633211 11111211 1122223444556666776654 356899999875
No 92
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=91.45 E-value=2.4 Score=35.55 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=56.5
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHh--hHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLE--HVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~--~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
|.+||+|-+....++|+-+..+ .++.- ...-..+.. .-...+..++++- +++.|++..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~-~~A~p--------------l~~i~~~~~~~~~~~~l~~li~~~-----~~~~vVVGl 61 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG-SLASP--------------LETIKRKNGKPQDFNALLKLVKEY-----QVDTVVVGL 61 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC-ccccc--------------hhhheeccccHhhHHHHHHHHHHh-----CCCEEEEec
Confidence 7899999999999999999433 33321 111111111 1223466666653 688999875
Q ss_pred CCC---CCchhHH--HHHHHHHHHhhcCCCeEeeccH
Q 018903 82 GPG---MGAPLQV--AAVVVRVLSQLWKKPIVAVNHC 113 (349)
Q Consensus 82 gPg---~~t~lr~--g~~~ak~la~~~~~p~~~v~hh 113 (349)
|- ...+.+. ...|++.|...+++|++.+..=
T Consensus 62 -P~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 62 -PLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred -CcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 43 1233343 5578888998899999887643
No 93
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=91.44 E-value=1.4 Score=45.23 Aligned_cols=75 Identities=13% Similarity=0.260 Sum_probs=52.4
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeec-cCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTY-FTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~-~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+||||.++..+.++|++.+|++++....+. ...+..|.. +.....-.+.+...+++++++++++.++|.+|+++.
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~-eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~ 77 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLE-GQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDA 77 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcc-cCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEecc
Confidence 799999999999999998999998754221 111111221 112223355566788899998888888999999886
No 94
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=90.69 E-value=0.66 Score=46.64 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=53.8
Q ss_pred EEEecCCcceeEEEEEcCCeEEEeeeeecc-CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec-CCC
Q 018903 7 LGFEGSANKIGVGVVTLDGSILSNPRHTYF-TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR-GPG 84 (349)
Q Consensus 7 LgIdts~~~~sval~~~dg~i~~~~~~~~~-~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~-gPg 84 (349)
||||.++....++|++.+|++++..+.... .....|.. ........+.+...+++++++.+++.++|.+|+++. .||
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~-e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g 79 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWS-EQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHG 79 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCe-eeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCce
Confidence 589999999999999989999986643321 11111221 122234456677889999999888888999999874 454
No 95
>PRK13410 molecular chaperone DnaK; Provisional
Probab=90.52 E-value=26 Score=37.09 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcC-----CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 242 AMLVEITERAMAHCD-----KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~-----~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
+.+.+.++++++..+ ++.|+|.||.+.-..+.+.+.+.+. .++... .-.|.++++|+|.+.....+.
T Consensus 309 ~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg---~~~~~~---~npdeaVA~GAAi~aa~ls~~ 380 (668)
T PRK13410 309 DRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP---REPNQN---VNPDEVVAVGAAIQAGILAGE 380 (668)
T ss_pred HHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcC---CCcccC---CCCchHHHHhHHHHHHhhccc
Confidence 334445555555443 5689999999999999999988652 332222 345789999998777666554
No 96
>CHL00094 dnaK heat shock protein 70
Probab=90.34 E-value=26 Score=36.74 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 256 DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 256 ~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
.++.|+|.||.+.-..+++.+.+.+. .++... ...|.++++|+|.+.....+.
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg---~~~~~~---~~pdeava~GAA~~aa~ls~~ 380 (621)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKKLLG---KKPNQS---VNPDEVVAIGAAVQAGVLAGE 380 (621)
T ss_pred hCcEEEEECCccCChHHHHHHHHHhC---CCcCcC---CCchhHHHhhhHHHHHHhcCC
Confidence 46799999999999999999998763 332222 345888999988776666654
No 97
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=89.19 E-value=1.6 Score=43.80 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=45.9
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeecc---CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTYF---TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~~---~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
++||||.++..+.++|++.+|++++..+.... .....|.. +.....-.+.+...+++++++ +..++|.+|+++.
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~-eqd~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s~ 78 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYH-IWDLEAIWQKLADCCQQINSE--LTEKHIRGIAVTT 78 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCce-eeCHHHHHHHHHHHHHHHHhh--cChhceEEEEEec
Confidence 48999999999999999989999986643211 01111221 111112334444556666543 4456799999876
No 98
>PRK10331 L-fuculokinase; Provisional
Probab=89.17 E-value=2 Score=43.30 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=47.1
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeecc---CCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTYF---TPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~~---~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
++||||.++..+.++|++.||++++..+.... .....|.. +.....-.+.+...+++++++. ...+|.+|+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~-eqd~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is~ 79 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWH-QWSLDAILQRFADCCRQINSEL--TECHIRGITVTT 79 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCc-ccCHHHHHHHHHHHHHHHHHhC--CccceEEEEEec
Confidence 68999999999999999999999986643311 01111211 1111223455556677777654 345799998876
No 99
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=88.10 E-value=6.8 Score=35.90 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=58.0
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~ 85 (349)
+||||-+.+...+++++.+|+++...+... |.. . ...+...+.+++++.......+..|+++. ||.
T Consensus 2 ~lgidiggt~i~~~l~d~~g~i~~~~~~~~---------~~~---~-~~~~~~~i~~~i~~~~~~~~~~~gIgv~~-pG~ 67 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQRIWHKRVPT---------PRE---D-YPQLLQILRDLTEEADTYCGVQGSVGIGI-PGL 67 (256)
T ss_pred EEEEEECCCcEEEEEECCCCCEEEEEEecC---------CCc---C-HHHHHHHHHHHHHHHHhhcCCCceEEEEe-cCc
Confidence 699999999999999998899987654321 111 1 12334455566655433222344666554 442
Q ss_pred C---chh--------HHHHHHHHHHHhhcCCCeEeeccHHHHHH
Q 018903 86 G---APL--------QVAAVVVRVLSQLWKKPIVAVNHCVAHIE 118 (349)
Q Consensus 86 ~---t~l--------r~g~~~ak~la~~~~~p~~~v~hh~aHa~ 118 (349)
. ++. ..+..+++.|...+++|+.--+--.+.|+
T Consensus 68 vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAl 111 (256)
T PRK13311 68 PNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFAL 111 (256)
T ss_pred EECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHH
Confidence 1 110 12345667788888999876555444443
No 100
>PRK13411 molecular chaperone DnaK; Provisional
Probab=87.99 E-value=39 Score=35.68 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcC-----CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 244 LVEITERAMAHCD-----KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 244 l~~~~~~~~~~~~-----~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
+.+.+.++++..+ ++.|+|.||.+.-..+++.|.+.+. +.++..+ ...|.+++.|+|.+.....+.
T Consensus 310 ~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~--~~~~~~~---~npdeaVA~GAAi~aa~l~~~ 380 (653)
T PRK13411 310 TIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFG--GKQPDRS---VNPDEAVALGAAIQAGVLGGE 380 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcC--CcCcCCC---CCchHHHHHHHHHHHHhhcCC
Confidence 4445555555544 5689999999999999999998753 1122222 345889999998776665554
No 101
>PLN02669 xylulokinase
Probab=87.56 E-value=1.7 Score=44.80 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=48.3
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeeecc--CCCC---CCCcchhh---hh-----hHHhhHHHHHHHHHHHcCCC
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHTYF--TPPG---QGFLPRET---AQ-----HHLEHVLPLVKSALKTAGIT 70 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~--~~~~---~g~~p~~~---~~-----~h~~~l~~~i~~~L~~~~i~ 70 (349)
.++||||.++..+.++|++.+|++++....... ..++ +|+.++.. .. .-.+.+..+++++. +.++.
T Consensus 8 ~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~~ 86 (556)
T PLN02669 8 SLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKFP 86 (556)
T ss_pred CeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCCC
Confidence 468999999999999999999999987643211 1122 13322111 00 11134445556654 56777
Q ss_pred CCCCCEEEEec
Q 018903 71 PDEIDCLCYTR 81 (349)
Q Consensus 71 ~~did~Ia~~~ 81 (349)
+++|.+|+++.
T Consensus 87 ~~~I~aIs~s~ 97 (556)
T PLN02669 87 FHKVVAISGSG 97 (556)
T ss_pred hhhEEEEEecC
Confidence 88899999873
No 102
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=87.13 E-value=44 Score=35.36 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcC-----CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 244 LVEITERAMAHCD-----KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 244 l~~~~~~~~~~~~-----~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
+.+.+.++++..+ ++.|+|.||.+.-..+++.+.+.+. .++... .-.|.+++.|+|.+.....+.
T Consensus 350 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~---~~~~~~---~npdeaVA~GAAi~aa~l~~~ 419 (663)
T PTZ00400 350 TIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFG---KEPSKG---VNPDEAVAMGAAIQAGVLKGE 419 (663)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhC---CCcccC---CCCccceeeccHHHHHhhcCC
Confidence 3444444444433 5789999999999999999998763 333221 245777888888776655554
No 103
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=86.65 E-value=1.9 Score=43.66 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=53.6
Q ss_pred EEEEEecCCcceeEEEEEcC-CeEEEeeeeeccCCCC--CCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLD-GSILSNPRHTYFTPPG--QGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~d-g~i~~~~~~~~~~~~~--~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+++|||.++.+.=++++|-. |++++..... -+++ ....++.....-.+.+..+|+++++++|+.+.+|-.|.++.
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p--~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDa 81 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGTLLARAVRP--YPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDA 81 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCcchhhcccc--eeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcc
Confidence 57999999999999999955 8998855321 1111 12233444445556677789999999999998898888654
No 104
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.01 E-value=48 Score=34.73 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHc-----CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 243 MLVEITERAMAHC-----DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 243 ~l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
.+.+.+.++++.. .++.|+|.||.+.-..+++.+.+.+ +.++..+ ...|.+++.|+|.+.....+.
T Consensus 308 ~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f---g~~~~~~---~npdeava~GAa~~aa~l~~~ 378 (627)
T PRK00290 308 RTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF---GKEPNKG---VNPDEVVAIGAAIQGGVLAGD 378 (627)
T ss_pred HHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh---CCCCCcC---cCChHHHHHhHHHHHHHhcCC
Confidence 3444455555443 3678999999999999999999876 3333222 346889999998776666554
No 105
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=85.84 E-value=48 Score=34.51 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=41.5
Q ss_pred cCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCCC
Q 018903 255 CDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSST 316 (349)
Q Consensus 255 ~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~ 316 (349)
..++-|++.||...=..+...+.+.+. -++ ...+--|.++++|++.......+..+
T Consensus 308 ~~I~~VilvGGstriP~V~~~v~~~f~---~~~---~~~inpdeava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 308 SDIDLVILVGGSTRIPAVQELVKEFFG---KEP---EKSINPDEAVALGAAIQAAVLSGEVP 363 (579)
T ss_pred hhCceEEEccceeccHHHHHHHHHHhC---ccc---cccCCccHHHHHHHHHHHHhhcCccc
Confidence 456789999999999999999988753 111 12235688999999988777777643
No 106
>PLN03184 chloroplast Hsp70; Provisional
Probab=85.29 E-value=55 Score=34.73 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=39.8
Q ss_pred CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 256 DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 256 ~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
.++.|+|.||.+.-..+++.+.+.+ +.++... ...|.++++|+|.+.....+.
T Consensus 365 dId~ViLvGGssriP~V~~~i~~~f---g~~~~~~---~npdeaVA~GAAi~aa~ls~~ 417 (673)
T PLN03184 365 DIDEVILVGGSTRIPAVQELVKKLT---GKDPNVT---VNPDEVVALGAAVQAGVLAGE 417 (673)
T ss_pred HccEEEEECCccccHHHHHHHHHHh---CCCcccc---cCcchHHHHHHHHHHHHhccC
Confidence 3579999999999999999999876 3333222 245889999998776665554
No 107
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=84.89 E-value=18 Score=30.80 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=61.3
Q ss_pred EEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCC-
Q 018903 8 GFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMG- 86 (349)
Q Consensus 8 gIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~- 86 (349)
|||-+.+...+++++.+|+++...+... | .....-.+.+...+++++.+.+.. .|+++. ||.+
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~---------~-~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~-pG~v~ 64 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPT---------P-TSPEELLDALAELIERLLADYGRS-----GIGISV-PGIVD 64 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEH---------H-SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEE-SSEEE
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEEC---------C-CCHHHHHHHHHHHHHHHHhhcccc-----cEEEec-cccCc
Confidence 6888899999999999999998765431 1 222334455667778887776532 666553 3321
Q ss_pred -----------chhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhh
Q 018903 87 -----------APLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGR 121 (349)
Q Consensus 87 -----------t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~ 121 (349)
.++. ...+.+.|...+++|+...+.-.+.|.+-+
T Consensus 65 ~~~g~i~~~~~~~~~-~~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~ 109 (179)
T PF00480_consen 65 SEKGRIISSPNPGWE-NIPLKEELEERFGVPVIIENDANAAALAEY 109 (179)
T ss_dssp TTTTEEEECSSGTGT-TCEHHHHHHHHHTSEEEEEEHHHHHHHHHH
T ss_pred CCCCeEEecCCCCcc-cCCHHHHhhcccceEEEEecCCCcceeehh
Confidence 1111 133556777788899987777666555433
No 108
>PRK13318 pantothenate kinase; Reviewed
Probab=82.89 E-value=6.6 Score=36.17 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=46.0
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec-CCC
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR-GPG 84 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~-gPg 84 (349)
+|+||.++..+..++++ +|+++...+..- .. ..-...+...++++++..++++.+++.|+++. -|+
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t--~~----------~~~~~~~~~~l~~l~~~~~~~~~~i~~I~issVvp~ 68 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRIST--DS----------RRTADEYGVWLKQLLGLSGLDPEDITGIIISSVVPS 68 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeC--CC----------CCCHHHHHHHHHHHHHHcCCCcccCceEEEEEecCc
Confidence 79999999999999999 888877543210 00 00112244567888888887777899987664 465
Q ss_pred C
Q 018903 85 M 85 (349)
Q Consensus 85 ~ 85 (349)
.
T Consensus 69 ~ 69 (258)
T PRK13318 69 V 69 (258)
T ss_pred h
Confidence 3
No 109
>PRK13321 pantothenate kinase; Reviewed
Probab=81.90 E-value=6.7 Score=36.14 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=43.3
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+|+||.++..+.+++++ +++++...+.. ... ..-...+...+..++++.++..++++.|+++.
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~i~~~~~~~-----------T~~-~~~~~~~~~~l~~l~~~~~~~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDRLLRSFRLP-----------TDK-SRTSDELGILLLSLFRHAGLDPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCEEEEEEEEe-----------cCC-CCCHHHHHHHHHHHHHHcCCChhhCCeEEEEe
Confidence 69999999999999999 67877643321 100 01123455678888888777777888887553
No 110
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=79.73 E-value=81 Score=32.76 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHc-----CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 243 MLVEITERAMAHC-----DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 243 ~l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
.+.+.+.++++.. .++.|+|.||.+.=..+++.+.+.+. .++..+ ...|.+++.|+|.+.....+.
T Consensus 306 ~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~---~~~~~~---~~pdeava~GAa~~aa~l~~~ 376 (595)
T TIGR02350 306 RTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG---KEPNKS---VNPDEVVAIGAAIQGGVLKGD 376 (595)
T ss_pred HHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC---CcccCC---cCcHHHHHHHHHHHHHHhcCC
Confidence 3444444554443 35789999999999999999998763 333322 346889999998877665554
No 111
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=79.53 E-value=85 Score=32.88 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcC-----CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 244 LVEITERAMAHCD-----KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 244 l~~~~~~~~~~~~-----~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
+.+.+..++++.+ ++.|+|.||.+.-..+++.+.+.+. .+++.+ ...|.+++.|+|.+.....+.
T Consensus 311 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg---~~~~~~---~npdeaVA~GAAi~a~~l~~~ 380 (616)
T PRK05183 311 TLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG---RTPLTS---IDPDKVVAIGAAIQADILAGN 380 (616)
T ss_pred HHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc---cCcCcC---CCchHHHHHHHHHHHHHhccc
Confidence 4445555555443 5689999999999999999998763 232222 356889999998776665554
No 112
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=79.48 E-value=6.1 Score=34.35 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=42.7
Q ss_pred EEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 7 LGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 7 LgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
+|||.+...+=+++++.++.++...+.. .. ...-...+...++.++++.++++++|+.|.++
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~-----------Tt-~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~g 63 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVP-----------TT-PDDPAEGILEALDALLEESGIDPSDIDRVRHG 63 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeC-----------CC-CcCHHHHHHHHHHhhhcccCCChhhCcEEEec
Confidence 6999999999889998443566654321 11 12234556678888888888888888888754
No 113
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=79.02 E-value=14 Score=35.36 Aligned_cols=60 Identities=8% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcC-------CC-eEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHH
Q 018903 243 MLVEITERAMAHCD-------KK-DVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLL 308 (349)
Q Consensus 243 ~l~~~~~~~~~~~~-------~~-~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~ 308 (349)
.+++.+++..++++ ++ .|+|+||.++=..+.+.+.+.+ +.++.+.. --+..+++|++.+.
T Consensus 254 ~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~---~~~v~~~~---~P~~ava~Gaa~~~ 321 (336)
T PRK13928 254 AIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET---KVPVYIAE---DPISCVALGTGKML 321 (336)
T ss_pred HHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH---CCCceecC---CHHHHHHHHHHHHH
Confidence 44555555555554 23 6999999999999999998876 45555543 23567778887664
No 114
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=77.67 E-value=15 Score=34.98 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=34.0
Q ss_pred eEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHH
Q 018903 259 DVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLL 308 (349)
Q Consensus 259 ~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~ 308 (349)
+|+|+||.++=..+.++|.+.+ +.++.++.. -+.+++.|++.+.
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~---~~~v~~~~~---P~~~va~Ga~~~~ 325 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKET---GLPVIVADD---PLLCVAKGTGKAL 325 (333)
T ss_pred CEEEECcccchhhHHHHHHHHH---CCCceecCC---hHHHHHHHHHHHH
Confidence 6999999999899999999876 566666542 2677888887663
No 115
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=77.50 E-value=6.7 Score=38.90 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=47.3
Q ss_pred cEEEEEecCCcceeEEEEEc-CCeEEEeeeeeccCCCCC-CCcchhhhh-----------hHHhhHHHHHHHHHHHcCCC
Q 018903 4 MIALGFEGSANKIGVGVVTL-DGSILSNPRHTYFTPPGQ-GFLPRETAQ-----------HHLEHVLPLVKSALKTAGIT 70 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~-dg~i~~~~~~~~~~~~~~-g~~p~~~~~-----------~h~~~l~~~i~~~L~~~~i~ 70 (349)
|+-++||-++.+..++|++. +|++++.......+..|+ .+..+.... .-.+.+..+++++++++|++
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~ 80 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGIS 80 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CEEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46689999999999999984 689998775443344443 221111111 11122456777888888999
Q ss_pred CCCCCEEEEecCC
Q 018903 71 PDEIDCLCYTRGP 83 (349)
Q Consensus 71 ~~did~Ia~~~gP 83 (349)
+++|..|++...|
T Consensus 81 ~~~I~~i~i~GNt 93 (412)
T PF14574_consen 81 PEDIYEIVIVGNT 93 (412)
T ss_dssp GGGEEEEEEEE-H
T ss_pred HHHeEEEEEEecH
Confidence 9999999988754
No 116
>PRK13324 pantothenate kinase; Reviewed
Probab=77.39 E-value=38 Score=31.39 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=45.3
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEE-ecCCC
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCY-TRGPG 84 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~-~~gPg 84 (349)
+|.||.++..+..++++ +++++...+... ....+-...+...+..++++.++.+.+++.|.+ +.-|.
T Consensus 2 iL~iDiGNT~ik~gl~~-~~~~~~~~r~~t-----------~~~~~t~de~~~~l~~~~~~~~~~~~~i~~viisSVvP~ 69 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD-GDRIVSQIRYAT-----------SSVDSTSDQMGVFLRQALRENSVDLGKIDGCGISSVVPH 69 (258)
T ss_pred EEEEEeCCCceEEEEEE-CCEEEEEEEEec-----------CccccchHHHHHHHHHHHHhcCCCccCCCeEEEEeCcch
Confidence 89999999999999999 777766433220 011122334556788888888888888887654 33464
No 117
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=75.95 E-value=17 Score=34.88 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcC-------CC-eEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHH
Q 018903 244 LVEITERAMAHCD-------KK-DVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLL 308 (349)
Q Consensus 244 l~~~~~~~~~~~~-------~~-~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~ 308 (349)
+.+.+++..++++ ++ .|+|+||.++=..+.+++.+.+ +.++.+.. --|..+++|++.+.
T Consensus 258 i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~---~~~v~~~~---~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 258 ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI---VVPVHVAA---NPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH---CCCceeCC---CHHHHHHHHHHHHH
Confidence 4555555555543 23 5999999999889999998876 45555542 23567888877663
No 118
>PRK07058 acetate kinase; Provisional
Probab=75.55 E-value=29 Score=34.17 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEccch-hcHHHHHHHHHHHHhcCCEE-----------EEcCC------CCCC
Q 018903 235 SLQETLFAMLVEITERAMAHCDKKDVLIVGGVG-CNERLQEMMRTMCSERGGRL-----------FATDD------RYCV 296 (349)
Q Consensus 235 ~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa-~N~~l~~~l~~~l~~~g~~v-----------~~~~~------~~~~ 296 (349)
.|.+.+.+.+..++..+ .+++.|+++||++ .+..+++++.+.++..|+++ +..+. +.++
T Consensus 300 ~f~yri~k~IGa~~a~L---g~vDaiVfTGGIgEns~~vr~~i~~~l~~lgi~lD~~~N~~~~~~Is~~~S~v~v~VipT 376 (396)
T PRK07058 300 LFALRIAGEIARLAATL---GGLDAVVFTAGIGEHQPAIRAAVCERLAWLGVELDPAANAANAFTISSRTSRVAAFVIPT 376 (396)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCEEEECCccccCcHHHHHHHHhhhhhhceeeCHhHcCCCCceecCCCCCceEEEECC
Confidence 34444444444444333 5799999999999 66679999999887655432 11111 1346
Q ss_pred hHHHHHHHHHHHHH
Q 018903 297 DNGAMIAYTGLLAF 310 (349)
Q Consensus 297 D~G~~iG~a~~~~~ 310 (349)
|.=.+|+.-.+..+
T Consensus 377 nEEl~IA~~~~~ll 390 (396)
T PRK07058 377 DEEQVIADEAFSVL 390 (396)
T ss_pred CHHHHHHHHHHHHH
Confidence 66678887776655
No 119
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=74.85 E-value=16 Score=34.80 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=33.5
Q ss_pred eEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHH
Q 018903 259 DVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLL 308 (349)
Q Consensus 259 ~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~ 308 (349)
.|+|+||.++=..+.++|.+.+ +.++.+.+ .-+.+++.|++-+.
T Consensus 279 ~IvL~GG~s~ipgl~~~l~~~~---~~~v~~~~---~P~~ava~Ga~~~~ 322 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLSEET---GLPVHVAE---DPLTCVARGTGKAL 322 (334)
T ss_pred CEEEECchhhhhHHHHHHHHHH---CCCcEecC---CHHHHHHHHHHHHH
Confidence 5999999999999999999876 45555543 23777888877654
No 120
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=74.85 E-value=78 Score=29.98 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=51.0
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCC-CCEEEEec
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDE-IDCLCYTR 81 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~d-id~Ia~~~ 81 (349)
++.|+|.....+-+.++++++.++....- ...+||. .|.. .-..++..+|.++++++|++.++ +..++...
T Consensus 4 ~y~GvEGgaT~s~~Vivd~~~~~~~~a~~-~~Tnh~~--ig~~---~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~l 75 (336)
T KOG1794|consen 4 FYGGVEGGATCSRLVIVDEDGTILGRAVG-GGTNHWL--IGST---TCASRIEDMIREAKEKAGWDKKGPLRSLGLGL 75 (336)
T ss_pred eeEeecCCcceeEEEEECCCCCEeeEeec-ccccccc--CCch---HHHHHHHHHHHHHHhhcCCCccCccceeeeec
Confidence 57999998888888888888988875421 1134552 1222 34567788999999999999888 78887654
No 121
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=74.48 E-value=22 Score=30.04 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=17.8
Q ss_pred EEEEEecCCcceeEEEEEcCC
Q 018903 5 IALGFEGSANKIGVGVVTLDG 25 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg 25 (349)
+|||||-+...++.|+++.++
T Consensus 1 rILGIDPGl~~~G~av~~~~~ 21 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEG 21 (154)
T ss_pred CEEEEccCcCceEEEEEEeeC
Confidence 489999999999999997433
No 122
>PRK13331 pantothenate kinase; Reviewed
Probab=74.01 E-value=14 Score=34.11 Aligned_cols=64 Identities=9% Similarity=-0.040 Sum_probs=44.6
Q ss_pred CCcEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEE-Ee
Q 018903 2 KRMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLC-YT 80 (349)
Q Consensus 2 ~~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia-~~ 80 (349)
-.|.+|.||.++..+.+++++ +++++...+ +. + . .+.. +..+|+..++..++|+.++ ++
T Consensus 5 ~~~~~L~iDiGNT~~~~g~f~-~~~~~~~~r-t~---~------~-----~t~d----~~~~l~~~~~~~~~i~~~iisS 64 (251)
T PRK13331 5 TSNEWLALMIGNSRLHWGYFS-GETLVKTWD-TP---H------L-----DESI----IQLLLPGQTLLIVAPNPLVIAS 64 (251)
T ss_pred CCCcEEEEEeCCCcEEEEEEE-CCEEEEEEE-cC---C------c-----chHH----HHHHHHHcCCCccccCEEEEEe
Confidence 357799999999999999999 777765323 11 0 0 1111 7888888888888887765 45
Q ss_pred cCCCC
Q 018903 81 RGPGM 85 (349)
Q Consensus 81 ~gPg~ 85 (349)
.-|..
T Consensus 65 VVP~~ 69 (251)
T PRK13331 65 VVPQQ 69 (251)
T ss_pred cCccH
Confidence 56753
No 123
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=73.58 E-value=2.7 Score=42.55 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHc-----C--CCeEEEEccchhcHHHHHHHHHHHHh-----cCCEEEEcCCCCCChH--HHHHHHHHHHH
Q 018903 244 LVEITERAMAHC-----D--KKDVLIVGGVGCNERLQEMMRTMCSE-----RGGRLFATDDRYCVDN--GAMIAYTGLLA 309 (349)
Q Consensus 244 l~~~~~~~~~~~-----~--~~~v~lsGGVa~N~~l~~~l~~~l~~-----~g~~v~~~~~~~~~D~--G~~iG~a~~~~ 309 (349)
|++++..+.+++ . +++|.|+||+++=..|.+||...+.. ..++|+.... |..|+ |++ .|++-..
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasd-P~LDAW~GA~-~~a~n~~ 616 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASD-PVLDAWRGAS-AWAANPT 616 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCC-cchhhhhhhH-HhhcCcc
Confidence 345555555554 2 67999999999999999999887753 1245665443 66775 222 3333333
Q ss_pred HHcCCCCCCcccccccCccC
Q 018903 310 FAHGSSTPLEESTFTQRFRT 329 (349)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~ 329 (349)
+..-+++..+.-..||.|=.
T Consensus 617 f~~~~~Tr~dy~E~G~e~~k 636 (645)
T KOG0681|consen 617 FTLTQITRKDYEEKGEEYLK 636 (645)
T ss_pred cchhhhhHHhhhhhhHHHHH
Confidence 34344444432225666543
No 124
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=73.27 E-value=22 Score=33.81 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=33.7
Q ss_pred Ce-EEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHH
Q 018903 258 KD-VLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLL 308 (349)
Q Consensus 258 ~~-v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~ 308 (349)
++ |+|+||-++=..+.++|.+.+ +.++.++. ..+.++++|++-+.
T Consensus 281 ~~~IvL~GG~s~ipg~~~~l~~~~---~~~v~~~~---~p~~ava~Ga~~~~ 326 (335)
T PRK13930 281 DRGIVLTGGGALLRGLDKLLSEET---GLPVHIAE---DPLTCVARGTGKAL 326 (335)
T ss_pred hCCEEEECchhcchhHHHHHHHHH---CCCceecC---CHHHHHHHHHHHHH
Confidence 44 999999999999999999876 45555543 34677888877654
No 125
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=73.02 E-value=13 Score=38.43 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=39.6
Q ss_pred cCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcC
Q 018903 255 CDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHG 313 (349)
Q Consensus 255 ~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~ 313 (349)
..++.|+|.||.+.-..+.+.|.+.+. -++..+. ..|.+++.|+|.+.....+
T Consensus 327 ~~i~~V~lvGG~sr~p~v~~~l~~~f~---~~~~~~~---~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 327 EDIDSVLLVGGSSRIPYVQEALKELFG---KKISKSV---NPDEAVARGAALYAAILSG 379 (602)
T ss_dssp GGESEEEEESGGGGSHHHHHHHHHHTT---SEEB-SS----TTTHHHHHHHHHHHHHHT
T ss_pred cccceeEEecCcccchhhhhhhhhccc---ccccccc---ccccccccccccchhhhcc
Confidence 346789999999999999999998763 3443332 4588899999877766666
No 126
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=72.76 E-value=55 Score=27.29 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=53.4
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEee--eeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNP--RHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~--~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
|+|.||+-.+.+.-+|++..++.+..-. |...+. .+......-.......+...+++. .||.|++-.
T Consensus 1 M~vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~------l~~~~~~~~vr~Fq~~f~kl~~dy-----~Vd~VvIk~ 69 (138)
T PF11215_consen 1 MKVCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFS------LSDDNSTEEVRKFQFTFAKLMEDY-----KVDKVVIKE 69 (138)
T ss_pred CeEEEEEEecCeEEEEEEecCCCceECCccceeEEE------cCCCccHHHHHHHHHHHHHHHHHc-----CCCEEEEEe
Confidence 7899999999999999998665544311 211110 001111112222334566666665 489999887
Q ss_pred CC--CCCchhHHHHHHHHHHHhhcCCCeEeecc
Q 018903 82 GP--GMGAPLQVAAVVVRVLSQLWKKPIVAVNH 112 (349)
Q Consensus 82 gP--g~~t~lr~g~~~ak~la~~~~~p~~~v~h 112 (349)
.| |-|.|--+|-.+--.+...-++++..|+.
T Consensus 70 R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~ 102 (138)
T PF11215_consen 70 RATKGKFAGGAVGFKMEAAIQLIDDVEVELVSP 102 (138)
T ss_pred cccCCCccCCchhHHHHHHHHhcCCCcEEEECH
Confidence 65 55555333333322333333566655554
No 127
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=71.99 E-value=5.2 Score=33.75 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.9
Q ss_pred EEEEecCCcceeEEEEEcCC
Q 018903 6 ALGFEGSANKIGVGVVTLDG 25 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg 25 (349)
|||||-+...++.|+++.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~ 20 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDG 20 (149)
T ss_dssp EEEEE--SSEEEEEEEEEET
T ss_pred CEEECCCCCCeeEEEEEeeC
Confidence 79999999999999998554
No 128
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=71.87 E-value=28 Score=35.52 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=46.1
Q ss_pred CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCCCCCc
Q 018903 256 DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSSTPLE 319 (349)
Q Consensus 256 ~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~~~~ 319 (349)
.+++|..+||-..|..+.+.+.... |.++.+++ .|+..++|.|....+.+|.+.++.
T Consensus 431 ~Id~l~~sGG~~KN~llmql~aDvt---g~~v~i~~----s~~a~llGsAm~~avAag~~~dl~ 487 (544)
T COG1069 431 AIDTLFASGGIRKNPLLMQLYADVT---GRPVVIPA----SDQAVLLGAAMFAAVAAGVHPDLP 487 (544)
T ss_pred eeeEEEecCCcccCHHHHHHHHHhc---CCeEEeec----ccchhhhHHHHHHHHHhccCcchH
Confidence 4689999999999999999888754 67887774 677788888877778878876654
No 129
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=70.19 E-value=9.5 Score=37.59 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=22.7
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeee
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPR 32 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~ 32 (349)
+++|||.++..+.++|++.+++++....
T Consensus 3 y~lGIDIGSTsTKaVVmd~~g~Il~~~i 30 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDKGEVIGRGI 30 (432)
T ss_pred eEEEEEcCchhEEEEEEcCCCcEEEEEe
Confidence 5899999999999999994446876543
No 130
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=70.15 E-value=15 Score=36.30 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=27.5
Q ss_pred cCCCeEEEEccch-hcHHHHHHHHHHHHhcCCE
Q 018903 255 CDKKDVLIVGGVG-CNERLQEMMRTMCSERGGR 286 (349)
Q Consensus 255 ~~~~~v~lsGGVa-~N~~l~~~l~~~l~~~g~~ 286 (349)
.+++.|+++||++ .+..+++++.+.+...|++
T Consensus 322 g~vDaiVfTGGIgE~s~~lr~~I~~~l~~lGi~ 354 (402)
T PRK00180 322 GRLDAIVFTAGIGENSALVREKVLEGLEFLGIE 354 (402)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHhhhhhcCee
Confidence 4699999999999 8889999999988766643
No 131
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=70.06 E-value=1.5e+02 Score=31.33 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHc-----CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 244 LVEITERAMAHC-----DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 244 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
+...+.++++.. .++.|+|.||-+.-..+++.+.+.+. .+.+. ..--|.++++|+|.+.....+.
T Consensus 336 ~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg---~~~~~---~~nPdeaVA~GAAi~a~~l~~~ 405 (657)
T PTZ00186 336 SIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQ---KDPFR---GVNPDEAVALGAATLGGVLRGD 405 (657)
T ss_pred HHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhC---CCccc---cCCCchHHHHhHHHHHHHhccc
Confidence 334444444433 46789999999999999999998763 22221 1356889999998777665554
No 132
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=67.08 E-value=77 Score=26.75 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=18.0
Q ss_pred cEEEEEecCCcc----eeEEEEEcCCeEEEeeee
Q 018903 4 MIALGFEGSANK----IGVGVVTLDGSILSNPRH 33 (349)
Q Consensus 4 m~iLgIdts~~~----~sval~~~dg~i~~~~~~ 33 (349)
..||+|..+..+ +.+|+++++|+++...+.
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred CEEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 468899877554 567788889999987655
No 133
>PRK08304 stage V sporulation protein AD; Validated
Probab=66.78 E-value=34 Score=32.93 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeec
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVN 111 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~ 111 (349)
+-...+++.+|+++|++++|||.|.+..-++... .+-.++..+++|.+.|+
T Consensus 58 eLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~-------sAs~vA~~LGIPa~dV~ 108 (337)
T PRK08304 58 KMMEDAIQQALQKANLKKSDIDYLLAGDLLNQII-------SANFAARELGIPFLGLY 108 (337)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcc-------hHHHHHHHhCCcEEEEe
Confidence 3455799999999999999999998765443221 11223344556776665
No 134
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=65.45 E-value=1.5e+02 Score=29.53 Aligned_cols=142 Identities=18% Similarity=0.271 Sum_probs=73.0
Q ss_pred eEEEEeCCeeEEEEEeCCcEEEEeecccchhhHHHHHHHhHcCCCCCCCchhHHHHhh-hhCCCCCCCccccCCceeech
Q 018903 130 VVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQLA-KKGEKFLDLPYVVKGMDVSFS 208 (349)
Q Consensus 130 ~~l~i~gg~~~~~~~~~g~~~~~~~~~~~S~Gr~~Dava~lLGl~~~~~eG~~le~lA-~~g~~~~~~~~~~~~~~~~f~ 208 (349)
+++++.||.|.+..+.+|.++. ....+-.--.+-..+|..|+.+ ++.. |.+= .||...++.. .....+...
T Consensus 206 ~lIDiG~GTTdIai~~~G~l~~-~~~ipvgG~~vT~DIa~~l~t~---~~~A--E~iK~~~g~a~~~~~--~~~~~i~v~ 277 (418)
T COG0849 206 ALIDIGGGTTDIAIYKNGALRY-TGVIPVGGDHVTKDIAKGLKTP---FEEA--ERIKIKYGSALISLA--DDEETIEVP 277 (418)
T ss_pred EEEEeCCCcEEEEEEECCEEEE-EeeEeeCccHHHHHHHHHhCCC---HHHH--HHHHHHcCccccCcC--CCcceEecc
Confidence 5677777777766677888753 3334444445667789999987 5431 1111 1222111110 001111100
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CeEEEEccchhcHHHHHHHHHHHHhc
Q 018903 209 GILSYIEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCDK-----KDVLIVGGVGCNERLQEMMRTMCSER 283 (349)
Q Consensus 209 ~l~~~~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~-----~~v~lsGGVa~N~~l~~~l~~~l~~~ 283 (349)
..-+... ...+...++.-++..+++ ++++++.-.++.+. ..|+|+||.++=..+.+..++.+. .
T Consensus 278 ~vg~~~~---------~~~t~~~ls~II~aR~~E-i~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~ 346 (418)
T COG0849 278 SVGSDIP---------RQVTRSELSEIIEARVEE-ILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-R 346 (418)
T ss_pred cCCCccc---------chhhHHHHHHHHHhhHHH-HHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-C
Confidence 0000000 012344444444444443 45555555555554 479999999988888888877763 2
Q ss_pred CCEEEEc
Q 018903 284 GGRLFAT 290 (349)
Q Consensus 284 g~~v~~~ 290 (349)
.+++..|
T Consensus 347 ~vRig~P 353 (418)
T COG0849 347 PVRLGVP 353 (418)
T ss_pred ceEeCCC
Confidence 3444445
No 135
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=63.54 E-value=27 Score=33.50 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 229 PADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 229 ~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
...|...+++.|++.=-++...++++ -|+|+||.++=..|.+.|++.+ +++|.+.+.
T Consensus 250 ~~~I~~~i~~~Le~~pPel~~DI~~~----GI~LtGGga~l~Gl~~~i~~~~---~~pV~va~~ 306 (326)
T PF06723_consen 250 VDQIVEAIKEVLEKTPPELAADILEN----GIVLTGGGALLRGLDEYISEET---GVPVRVADD 306 (326)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHH-----EEEESGGGGSBTHHHHHHHHH---SS-EEE-SS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHC----CEEEEChhhhhccHHHHHHHHH---CCCEEEcCC
Confidence 34455555555555555555554432 6999999999999999999987 689999764
No 136
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=62.94 E-value=16 Score=32.63 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcC-CCCCChHHH
Q 018903 237 QETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATD-DRYCVDNGA 300 (349)
Q Consensus 237 q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~-~~~~~D~G~ 300 (349)
-+-+-+.+++++++-.+.+++..+.|.||-..-...-.-+++++ +.++|.|. +.+++--|+
T Consensus 207 v~PV~eKMAeIv~~hie~~~i~dl~lvGGac~~~g~e~~Fe~~l---~l~v~~P~~p~y~TPLgI 268 (277)
T COG4820 207 VKPVYEKMAEIVARHIEGQGITDLWLVGGACMQPGVEELFEKQL---ALQVHLPQHPLYMTPLGI 268 (277)
T ss_pred hhHHHHHHHHHHHHHhccCCCcceEEecccccCccHHHHHHHHh---ccccccCCCcceechhhh
Confidence 34455667777788888899999999999777676677677665 46777765 344554444
No 137
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.88 E-value=1.3e+02 Score=29.00 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=70.5
Q ss_pred EeCCeeEEEEEeCCcEEEEeecccchhhHHHHHHHhHcCCCCCCCchhHHHHhhhhCCCCCCCccccCCceeechhHHHH
Q 018903 134 VSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFLDLPYVVKGMDVSFSGILSY 213 (349)
Q Consensus 134 i~gg~~~~~~~~~g~~~~~~~~~~~S~Gr~~Dava~lLGl~~~~~eG~~le~lA~~g~~~~~~~~~~~~~~~~f~~l~~~ 213 (349)
+.+..+.+....+|+. .+..+.+-|.=.+=+.+.+..+++ + .+.|.. ..+ ..+|. +..+..+...
T Consensus 200 Igat~s~l~vi~~gk~-ly~r~~~~g~~Qlt~~i~r~~~L~---~--~~a~~~-k~~---~~~P~-----~y~~~vl~~f 264 (354)
T COG4972 200 IGATSSELLVIQDGKI-LYTREVPVGTDQLTQEIQRAYSLT---E--EKAEEI-KRG---GTLPT-----DYGSEVLRPF 264 (354)
T ss_pred ecccceEEEEEECCee-eeEeeccCcHHHHHHHHHHHhCCC---h--hHhHHH-HhC---CCCCC-----chhHHHHHHH
Confidence 4344455444456654 456677778878889999999998 3 222211 111 12221 1111222221
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCE-EEEcC
Q 018903 214 IEATAAEKLNNNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGR-LFATD 291 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~-v~~~~ 291 (349)
+. .-..+|.+++|..+... .-..++.++|+||.+-=..|-+.+..++ +++ ..++|
T Consensus 265 ----~~-------~l~~ei~Rslqfy~~~s---------~~~~id~i~LaGggA~l~gL~~~i~qrl---~~~t~vanP 320 (354)
T COG4972 265 ----LG-------ELTQEIRRSLQFYLSQS---------EMVDIDQILLAGGGASLEGLAAAIQQRL---SIPTEVANP 320 (354)
T ss_pred ----HH-------HHHHHHHHHHHHHHhcc---------ccceeeEEEEecCCcchhhHHHHHHHHh---CCCeEeeCH
Confidence 11 12456777777665433 2345789999999999999999998877 564 44455
No 138
>PRK12408 glucokinase; Provisional
Probab=61.79 E-value=47 Score=31.82 Aligned_cols=99 Identities=10% Similarity=0.016 Sum_probs=58.7
Q ss_pred CCCc-EEEEEecCCcceeEEEEEcCCeE------EEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCC
Q 018903 1 MKRM-IALGFEGSANKIGVGVVTLDGSI------LSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDE 73 (349)
Q Consensus 1 m~~m-~iLgIdts~~~~sval~~~dg~i------~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~d 73 (349)
|-+| .+|++|-+...+.++|++.+|++ +...+. |.. ..+.+..++++++++ . .+
T Consensus 12 ~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~~~~-----------~t~----~~~~~~~~i~~~~~~-~---~~ 72 (336)
T PRK12408 12 VPRPESFVAADVGGTHVRVALVCASPDAAKPVELLDYRTY-----------RCA----DYPSLAAILADFLAE-C---AP 72 (336)
T ss_pred CcccccEEEEEcChhhhheeEEeccCCccccccccceeEe-----------cCC----CccCHHHHHHHHHhc-C---CC
Confidence 4445 48999999999999999855663 222111 110 112344567777765 2 25
Q ss_pred CCEEEEecCCCC-C-c------hhHHHHHHHHHHHhhcCCC-eEeeccHHHHHHHh
Q 018903 74 IDCLCYTRGPGM-G-A------PLQVAAVVVRVLSQLWKKP-IVAVNHCVAHIEMG 120 (349)
Q Consensus 74 id~Ia~~~gPg~-~-t------~lr~g~~~ak~la~~~~~p-~~~v~hh~aHa~sa 120 (349)
++.|++.. ||. . + .+-- ..+.+.|...+++| +..+|=..|.+++-
T Consensus 73 ~~~igIg~-pG~~~~~g~v~~~nl~w-~~~~~~l~~~~~~~~V~l~ND~naaa~gE 126 (336)
T PRK12408 73 VRRGVIAS-AGYALDDGRVITANLPW-TLSPEQIRAQLGLQAVHLVNDFEAVAYAA 126 (336)
T ss_pred cCEEEEEe-cCCceECCEEEecCCCC-ccCHHHHHHHcCCCeEEEeecHHHHHccc
Confidence 77777664 332 1 1 1100 11346788888986 88888777776654
No 139
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=60.04 E-value=35 Score=34.17 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=46.7
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEee--eeeccCCCC---CCCcchh------hhhhHHhhHHHHHHHHHHHcCCCCCC
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNP--RHTYFTPPG---QGFLPRE------TAQHHLEHVLPLVKSALKTAGITPDE 73 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~--~~~~~~~~~---~g~~p~~------~~~~h~~~l~~~i~~~L~~~~i~~~d 73 (349)
..||+|-|++...+.+++.+.+|+... ++.+.-++| .|++-.. ...--+-....++-+.|.++|.+++.
T Consensus 10 ~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~~~~~d~~k 89 (545)
T KOG2531|consen 10 SFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLREAGFDLSK 89 (545)
T ss_pred eeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 379999999999999999889998755 333322222 2332111 00111223445667778888988777
Q ss_pred CCEEE
Q 018903 74 IDCLC 78 (349)
Q Consensus 74 id~Ia 78 (349)
|-+|.
T Consensus 90 V~aiS 94 (545)
T KOG2531|consen 90 VMAIS 94 (545)
T ss_pred hhhhc
Confidence 77775
No 140
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=60.03 E-value=16 Score=29.62 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeecc
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNH 112 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~h 112 (349)
+.+...|+++|++.++++.+|+.|+.-..-. ...--..++..+++|++.++-
T Consensus 15 ~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~-------~E~~l~~~A~~l~~~~~~~~~ 66 (121)
T PF01890_consen 15 EEIEEAIEQALAEAGLSPRSIAAIASIDIKA-------DEPGLLELAEELGIPLRFFSA 66 (121)
T ss_dssp HHHHHHHHHHHHHCT--GGGEEEEEESSSSS---------HHHHHHHHHCTSEEEEE-H
T ss_pred HHHHHHHHHHHHHcCCChhhccEEEeccccC-------CCHHHHHHHHHhCCCeEEECH
Confidence 3456789999999999999999999653211 111234678889999988763
No 141
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=59.61 E-value=38 Score=33.17 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=41.3
Q ss_pred cEEEEEecCCcceeEEEEEcC-CeEEEeeeeecc-------CCCCCC--Ccch-hhhhhHHhhHHHHHHHHHHH-cCCCC
Q 018903 4 MIALGFEGSANKIGVGVVTLD-GSILSNPRHTYF-------TPPGQG--FLPR-ETAQHHLEHVLPLVKSALKT-AGITP 71 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~d-g~i~~~~~~~~~-------~~~~~g--~~p~-~~~~~h~~~l~~~i~~~L~~-~~i~~ 71 (349)
|+||.|++++.+...+|++.. +++++.-..+++ +-...| -... .....|.+.+..+++.+.+. ...++
T Consensus 1 ~~iLviN~GSSSlKf~l~~~~~~~~~~~Gl~Erig~~~~~~~~~~~~~~~~~~~~~~~dh~~al~~l~~~l~~~~ii~~~ 80 (396)
T COG0282 1 MKILVINAGSSSLKFQLFDMPELEVLASGLAERIGLPDAIITIKFDGKQKLELEADIADHKEALKLLLETLEEHKIIKSL 80 (396)
T ss_pred CeEEEEecCcchheeeEeccCcccchhhhhHHHcCCCCceEEEEecCccceeeecCCCCHHHHHHHHHHHHHhcchhcch
Confidence 679999999999999999843 444443211111 000011 0001 11133777766666666652 12344
Q ss_pred CCCCEEE
Q 018903 72 DEIDCLC 78 (349)
Q Consensus 72 ~did~Ia 78 (349)
++|++|.
T Consensus 81 ~~I~~vG 87 (396)
T COG0282 81 DEIDAVG 87 (396)
T ss_pred hhhcEEe
Confidence 7888886
No 142
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=58.66 E-value=1.8e+02 Score=28.10 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.2
Q ss_pred Ce-EEEEccchhcHHHHHHHHHHHH
Q 018903 258 KD-VLIVGGVGCNERLQEMMRTMCS 281 (349)
Q Consensus 258 ~~-v~lsGGVa~N~~l~~~l~~~l~ 281 (349)
+. |+|+||.++=..+.+.+.+.+.
T Consensus 315 ~~gIvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 315 NGGIVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred CCEEEEeChHHcccCHHHHHHHHhC
Confidence 45 9999999999999999999873
No 143
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=58.66 E-value=62 Score=26.54 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=51.5
Q ss_pred EEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCC---
Q 018903 7 LGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGP--- 83 (349)
Q Consensus 7 LgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gP--- 83 (349)
||||-+...+++|+.+..+ .++.-.... +.. . .......+..++++. +++.|++.. |
T Consensus 1 laiD~G~kriGvA~~d~~~-~~a~pl~~i---------~~~---~-~~~~~~~l~~~i~~~-----~~~~iVvGl-P~~~ 60 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITG-WTAQGIPTI---------KAQ---D-GEPDWSRIEELLKEW-----TPDKIVVGL-PLNM 60 (130)
T ss_pred CeEccCCCeEEEEEECCCC-CEEeceEEE---------Eec---C-CcHHHHHHHHHHHHc-----CCCEEEEec-cCCC
Confidence 6899999999999888434 333211110 000 0 012234577777764 478898863 3
Q ss_pred -CCCch-hHHHHHHHHHHHhhcCCCeEeeccH
Q 018903 84 -GMGAP-LQVAAVVVRVLSQLWKKPIVAVNHC 113 (349)
Q Consensus 84 -g~~t~-lr~g~~~ak~la~~~~~p~~~v~hh 113 (349)
|..+. -+....|++.|...+++|+..++..
T Consensus 61 dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr 92 (130)
T TIGR00250 61 DGTEGPLTERAQKFANRLEGRFGVPVVLWDER 92 (130)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 32222 2334467888887789999888643
No 144
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=58.23 E-value=2e+02 Score=28.50 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred CeEEEEccchhcHHHHHHHHHHHH
Q 018903 258 KDVLIVGGVGCNERLQEMMRTMCS 281 (349)
Q Consensus 258 ~~v~lsGGVa~N~~l~~~l~~~l~ 281 (349)
..|+|+||.++=..+.+.+.+.+.
T Consensus 330 ~givLtGG~a~lpgi~e~~~~~f~ 353 (420)
T PRK09472 330 AGIVLTGGAAQIEGLAACAQRVFH 353 (420)
T ss_pred CEEEEeCchhccccHHHHHHHHhC
Confidence 459999999999999999998873
No 145
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=58.05 E-value=35 Score=29.11 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.8
Q ss_pred EEEEecCCcceeEEEEEcCCe
Q 018903 6 ALGFEGSANKIGVGVVTLDGS 26 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~ 26 (349)
|||||-+...+..++++.++.
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~ 21 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGR 21 (156)
T ss_pred CEeECcccccccEEEEEecCC
Confidence 699999999999999984443
No 146
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=57.59 E-value=18 Score=34.38 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
..++.+++.+|+++|++++|||.+++.
T Consensus 226 ~~~~~~i~~~L~~~g~~~~did~~~~h 252 (326)
T CHL00203 226 FQVPAVIIKCLNALNISIDEVDWFILH 252 (326)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 346779999999999999999999874
No 147
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=57.44 E-value=11 Score=30.13 Aligned_cols=30 Identities=33% Similarity=0.612 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~ 85 (349)
.+...++.+|++++++++|||.|-.. |+|.
T Consensus 26 ~~~~~i~~al~~agi~~~~I~~i~~h-g~Gt 55 (119)
T PF02801_consen 26 ALARAIRRALADAGISPEDIDYIEAH-GTGT 55 (119)
T ss_dssp HHHHHHHHHHHHHTS-GGGEEEEE-----SS
T ss_pred HHHHHHHHHHhhhccccccceeeeee-cccc
Confidence 44567999999999999999999865 5553
No 148
>PRK12408 glucokinase; Provisional
Probab=53.68 E-value=41 Score=32.26 Aligned_cols=72 Identities=8% Similarity=0.083 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEEccchhc--HHHHHH--HHHHHHhc-------CCEEEEcCCCCCChHH
Q 018903 232 LCYSLQETLFAMLVEITERAMAHCDKKD-VLIVGGVGCN--ERLQEM--MRTMCSER-------GGRLFATDDRYCVDNG 299 (349)
Q Consensus 232 iA~~~q~~l~~~l~~~~~~~~~~~~~~~-v~lsGGVa~N--~~l~~~--l~~~l~~~-------g~~v~~~~~~~~~D~G 299 (349)
.|..+-+.+.+.+...+..+...++.+. |++.||++.+ ..+.+. +++.+.+. ..+|+... -+| +
T Consensus 247 ~A~~~~~~~~~~La~~i~nl~~~ldPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~---~~~-a 322 (336)
T PRK12408 247 LAHEALQVFCGFLGSVVGDMALAYGARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVE---HGQ-L 322 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEe---CCC-h
Confidence 4444444555555555555656678888 9999999864 444443 55444322 12333333 234 5
Q ss_pred HHHHHHHH
Q 018903 300 AMIAYTGL 307 (349)
Q Consensus 300 ~~iG~a~~ 307 (349)
.++|++.+
T Consensus 323 gl~GAa~~ 330 (336)
T PRK12408 323 GVLGAASW 330 (336)
T ss_pred HHHHHHHH
Confidence 66788754
No 149
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=53.03 E-value=24 Score=28.86 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeecc
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNH 112 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~h 112 (349)
.+...|++.|++.|+.+..|+.|+.-.--. ...--..++..+++|+..++-
T Consensus 18 ~i~~ai~~~L~~~~l~~~si~~lasi~~K~-------~E~~L~~~A~~lg~pl~~~~~ 68 (126)
T PRK07027 18 QIEAAIRAALAQRPLASADVRVVATLDLKA-------DEAGLLALCARHGWPLRAFSA 68 (126)
T ss_pred HHHHHHHHHHHHcCCCHHHhheeEehhhhc-------CCHHHHHHHHHhCCCeEEeCH
Confidence 355689999999999999999998543110 011123567788899888753
No 150
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=52.74 E-value=86 Score=30.10 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeec
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVN 111 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~ 111 (349)
+-...+++.+|+++|++++|||.|.+..-|.... .+-.++..+++|.+.|+
T Consensus 52 eLa~eAa~~ALekAGL~~~DID~IIvGdl~~Q~~-------~As~vA~~LGIP~fdV~ 102 (327)
T TIGR02845 52 KLMEDAVNLALKKANLKKDDVDFFLAGDLLNQII-------TANFVARDLGIPFLGLY 102 (327)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeCCCCccc-------HHHHHHHHhCCCEEEEe
Confidence 3455789999999999999999998754332111 12234455566766655
No 151
>PLN02621 nicotinamidase
Probab=52.49 E-value=61 Score=28.38 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=35.7
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHH
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFA 311 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~ 311 (349)
+..|+++|+++|-+.-.|.+...+. +.+.|++++++.. .|.+..--.-.+++..++
T Consensus 123 ~~~gi~~lvi~Gv~T~~CV~~Ta~~--a~~~gy~v~v~~D-a~as~~~~~h~~al~~~~ 178 (197)
T PLN02621 123 RKIGVKEVIVTGVMTNLCCETTARE--AFVRGFRVFFSTD-ATATANEELHEATLKNLA 178 (197)
T ss_pred HHCCCCEEEEEecccchhHHHHHHH--HHHCCCEEEEecc-ccCCCCHHHHHHHHHHHH
Confidence 4578999999988888887777543 3467999988764 333332223334444443
No 152
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=52.27 E-value=49 Score=27.48 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=31.6
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChH
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDN 298 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~ 298 (349)
+..++++|+|+|=..-.|.+...+.. .++|+++++... .|++.
T Consensus 106 ~~~~i~~vil~G~~t~~CV~~T~~~a--~~~G~~v~vi~D-a~~s~ 148 (161)
T cd00431 106 RERGIDTLVVCGIATDICVLATARDA--LDLGYRVIVVED-ACATR 148 (161)
T ss_pred HHCCCCEEEEEecCcChhHHHHHHHH--HHCCCEEEEehh-hcccC
Confidence 55689999999988888888776543 357999988765 34443
No 153
>PRK11678 putative chaperone; Provisional
Probab=52.07 E-value=75 Score=31.93 Aligned_cols=73 Identities=11% Similarity=0.179 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHH
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHCD--KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYT 305 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~~--~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a 305 (349)
+..++...++. +.+.+.+.++.+.+..+ .+.|+|+||.+.=..+.+.+.+.+. +.++.... .+..++.|.+
T Consensus 370 tR~efe~ii~~-~l~ri~~~i~~~L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg--~~~v~~g~----~~~sVa~Gla 442 (450)
T PRK11678 370 SQQGLEEAISQ-PLARILELVQLALDQAQVKPDVIYLTGGSARSPLIRAALAQQLP--GIPIVGGD----DFGSVTAGLA 442 (450)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHHHCC--CCcEEeCC----CcchHHHHHH
Confidence 44555554544 34446666677766654 4689999999999999999998753 23444443 2456776766
Q ss_pred HH
Q 018903 306 GL 307 (349)
Q Consensus 306 ~~ 307 (349)
.+
T Consensus 443 ~~ 444 (450)
T PRK11678 443 RW 444 (450)
T ss_pred HH
Confidence 54
No 154
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=50.68 E-value=59 Score=29.68 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcC
Q 018903 237 QETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 237 q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~ 291 (349)
|+++.+.+.+.+ + .|++-+++|=|-.....|++++++..+..+-++|+|+
T Consensus 70 ~~Av~e~~~~~L----~-~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pS 119 (255)
T COG1712 70 PEAVREYVPKIL----K-AGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPS 119 (255)
T ss_pred HHHHHHHhHHHH----h-cCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecC
Confidence 555555555554 3 5899999999999999999999999887778999997
No 155
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=50.63 E-value=2.7e+02 Score=27.78 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=37.3
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCC
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGS 314 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~ 314 (349)
++..++.+||.||...=....+.+.+.+. |- -|..-.--|.++++|+|.-.=+..|.
T Consensus 359 kKsdideiVLVGGsTrIPKvQqllk~fF~--GK---epskGinPdEAVAYGAAVQaGvlsGe 415 (663)
T KOG0100|consen 359 KKSDIDEIVLVGGSTRIPKVQQLLKDFFN--GK---EPSKGINPDEAVAYGAAVQAGVLSGE 415 (663)
T ss_pred ccccCceEEEecCcccChhHHHHHHHHhC--CC---CccCCCChHHHHHhhhhhhhcccccc
Confidence 45678899999998887777776665431 21 23333456889999987544444444
No 156
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=50.48 E-value=31 Score=34.45 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=42.2
Q ss_pred EEEecCCcceeEEEEEcC---CeEE-EeeeeeccCCCCCCCcchhh-hhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 7 LGFEGSANKIGVGVVTLD---GSIL-SNPRHTYFTPPGQGFLPRET-AQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 7 LgIdts~~~~sval~~~d---g~i~-~~~~~~~~~~~~~g~~p~~~-~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
|+||.++..+.++|++.+ |+++ ...... ..+..|..- .....+.+...+.++++++.....+|.+|+++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~i~~Igis~ 75 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRF-----KNGLVSQNGHECWDIDALEQEIRLGLNKVDAEGIAPDSIGIDT 75 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeC-----CCCCEeECCEEEEehHHHHHHHHHHHHHHhccCCCceEEEEec
Confidence 689999999999999966 5676 333211 112221111 112233455677777777654445789998875
No 157
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=50.00 E-value=92 Score=32.72 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=62.2
Q ss_pred CcEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEec-
Q 018903 3 RMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTR- 81 (349)
Q Consensus 3 ~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~- 81 (349)
.| +||||-+...+.++|++++|+++...++. ... ...+...|+.++++.+. .+++.|++..
T Consensus 18 ~~-~L~iDIGGT~ir~al~~~~g~i~~~~~~~-----------t~~----~~~~~~~i~~~l~~~~~--~~~~~igig~p 79 (638)
T PRK14101 18 GP-RLLADVGGTNARFALETGPGEITQIRVYP-----------GAD----YPTLTDAIRKYLKDVKI--GRVNHAAIAIA 79 (638)
T ss_pred CC-EEEEEcCchhheeeeecCCCcccceeEEe-----------cCC----CCCHHHHHHHHHHhcCC--CCcceEEEEEe
Confidence 46 79999999999999998788886644321 110 14566788888887653 3688887664
Q ss_pred CCCC-----Cch--hHHHHHHHHHHHhhcCCC-eEeeccHHHHHHH
Q 018903 82 GPGM-----GAP--LQVAAVVVRVLSQLWKKP-IVAVNHCVAHIEM 119 (349)
Q Consensus 82 gPg~-----~t~--lr~g~~~ak~la~~~~~p-~~~v~hh~aHa~s 119 (349)
||-. .+. +.. .. +.|...+++| +..+|=..|.|++
T Consensus 80 GpVd~~~~~~~nl~w~~--~~-~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 80 NPVDGDQVRMTNHDWSF--SI-EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred cCccCCeeeecCCCcEe--cH-HHHHHHcCCCeEEEEchHHHHHcC
Confidence 3311 111 121 22 5677778886 5567777777666
No 158
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=49.96 E-value=46 Score=34.32 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCCCEEEEecC--CCCCch-------hHHHHHHHHHHHhhcCCCeEeec
Q 018903 72 DEIDCLCYTRG--PGMGAP-------LQVAAVVVRVLSQLWKKPIVAVN 111 (349)
Q Consensus 72 ~did~Ia~~~g--Pg~~t~-------lr~g~~~ak~la~~~~~p~~~v~ 111 (349)
.+-+.++|+.| +|.||| .-..+.+|+.+...++.|+|+|=
T Consensus 81 ~~~~t~vVvtGQQ~gLfTGPLYtiyK~is~I~LA~~l~~~l~~pvVPVF 129 (542)
T PF10079_consen 81 ADPNTFVVVTGQQAGLFTGPLYTIYKAISAIKLAKELEEELGRPVVPVF 129 (542)
T ss_pred cCCCCEEEEeCcccccccchHHHHHHHHHHHHHHHHHHHHhCCCeeeEE
Confidence 36677777776 899998 22334678888888898888763
No 159
>PLN02192 3-ketoacyl-CoA synthase
Probab=49.50 E-value=44 Score=34.19 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=29.1
Q ss_pred hhhHHhhHH-HHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 018903 49 AQHHLEHVL-PLVKSALKTAGITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 49 ~~~h~~~l~-~~i~~~L~~~~i~~~did~Ia~~~gPg~ 85 (349)
.++..+.+. .+++++|+++|++++|||.|+++..|..
T Consensus 172 ~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~ 209 (511)
T PLN02192 172 ARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFN 209 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCC
Confidence 344444444 6899999999999999999998877653
No 160
>PRK13320 pantothenate kinase; Reviewed
Probab=49.18 E-value=95 Score=28.39 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEccc
Q 018903 228 TPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGV 266 (349)
Q Consensus 228 ~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGV 266 (349)
..+.|...+...+...+-.++.++.++.+.-.++++||-
T Consensus 175 T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~vi~TGG~ 213 (244)
T PRK13320 175 TEECIRSGVVWGCVAEIEGLIEAYKSKLPELLVILTGGD 213 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 345566666677777777777778777774589999994
No 161
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=48.61 E-value=45 Score=30.07 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 245 VEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
.++++.+.+ .|.+-|.+.++-.. ..++..|+++++..|+++.+|.+
T Consensus 66 ~~l~~~~~e-~g~kavIvp~~~~~-~g~~~~lk~~~e~~gi~~~~P~~ 111 (217)
T PF02593_consen 66 YELPEIAKE-AGVKAVIVPSESPK-PGLRRQLKKQLEEFGIEVEFPKP 111 (217)
T ss_pred HHHHHHHHH-cCCCEEEEecCCCc-cchHHHHHHHHHhcCceeecCcc
Confidence 344444433 78888877777555 89999999999999999999885
No 162
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=47.83 E-value=77 Score=27.90 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=36.7
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHH
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAF 310 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~ 310 (349)
+..|+++|+++|-..-+|++...+.. .++|+++++... .|.+..-..--+++..+
T Consensus 138 r~~gi~~lii~Gv~T~~CV~~Ta~~A--~~~Gy~v~vv~D-a~as~~~~~h~~al~~l 192 (203)
T cd01013 138 KESGRDQLIITGVYAHIGCLSTAVDA--FMRDIQPFVVAD-AIADFSLEEHRMALKYA 192 (203)
T ss_pred HHcCCCEEEEEEeccChhHHHHHHHH--HHCCCeEEEecc-ccCCCCHHHHHHHHHHH
Confidence 45789999999988888888887554 357999988765 34443333333334333
No 163
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=47.74 E-value=39 Score=35.53 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEccchhc--HHHHH-HHHHHHHhc--------CCEEEEcCCCCCChH
Q 018903 231 DLCYSLQETLFAMLVEITERAMAHCD-KKDVLIVGGVGCN--ERLQE-MMRTMCSER--------GGRLFATDDRYCVDN 298 (349)
Q Consensus 231 diA~~~q~~l~~~l~~~~~~~~~~~~-~~~v~lsGGVa~N--~~l~~-~l~~~l~~~--------g~~v~~~~~~~~~D~ 298 (349)
.+|..+-+.+.+.+...+..+...++ ...|+++|||+.+ ..+.. .+.+.+.+. .++|++-. .|.
T Consensus 243 ~~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~----~~~ 318 (638)
T PRK14101 243 ALALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLIT----AEY 318 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEe----CCC
Confidence 34444555555555555655556676 6889999999855 33332 444444433 34454432 233
Q ss_pred HHHHHHHHHHHHH
Q 018903 299 GAMIAYTGLLAFA 311 (349)
Q Consensus 299 G~~iG~a~~~~~~ 311 (349)
...+|++++..-+
T Consensus 319 ~~l~Gaa~~~~~~ 331 (638)
T PRK14101 319 PAFLGVSAILAEQ 331 (638)
T ss_pred hhHHHHHHHHHHH
Confidence 3556765554433
No 164
>PRK13326 pantothenate kinase; Reviewed
Probab=47.30 E-value=2e+02 Score=26.63 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=21.3
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEe
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSN 30 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~ 30 (349)
+|.||.++..+.+++.+ +++++..
T Consensus 8 ~L~IDiGNT~ik~glf~-~~~l~~~ 31 (262)
T PRK13326 8 QLIIDIGNTSISFALYK-DNKMQIF 31 (262)
T ss_pred EEEEEeCCCeEEEEEEE-CCEEEEE
Confidence 79999999999999999 7787763
No 165
>PRK12404 stage V sporulation protein AD; Provisional
Probab=46.11 E-value=98 Score=29.74 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+..+++.+|+++|++++|||.+.+..
T Consensus 58 ~~EA~~~AL~kAGI~~~DID~i~vGd 83 (334)
T PRK12404 58 LEEACSRAIEKAKLRKEDIQFFLAGD 83 (334)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 44689999999999999999998754
No 166
>PLN02377 3-ketoacyl-CoA synthase
Probab=45.85 E-value=54 Score=33.47 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=27.3
Q ss_pred hhHHhhHH-HHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 50 QHHLEHVL-PLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 50 ~~h~~~l~-~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
++..+.+. .+++++|+++|++++|||.|+++..|-
T Consensus 169 ~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~ 204 (502)
T PLN02377 169 REEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLF 204 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 33444444 689999999999999999999876554
No 167
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=44.63 E-value=99 Score=25.84 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=31.0
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCCh
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVD 297 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D 297 (349)
+..|+++|+++|-..-+|.+...... .++|++++++.. .|++
T Consensus 84 ~~~gi~~lii~G~~T~~CV~~Ta~~a--~~~g~~v~v~~D-a~as 125 (157)
T cd01012 84 KATGRKQVVLAGLETHVCVLQTALDL--LEEGYEVFVVAD-ACGS 125 (157)
T ss_pred HhcCCCEEEEEEeeccHHHHHHHHHH--HHCCCEEEEEee-CCCC
Confidence 45689999999988888888776544 356999888754 3444
No 168
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=44.25 E-value=42 Score=30.76 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHH----HHhcCCEEEEcC-C-CCCChHHHHHHHH
Q 018903 240 LFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTM----CSERGGRLFATD-D-RYCVDNGAMIAYT 305 (349)
Q Consensus 240 l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~----l~~~g~~v~~~~-~-~~~~D~G~~iG~a 305 (349)
+.+-+.+....+.++.|.=+|+|||| .+++.|.+.|..- ......++|+-. + +|-.|+=.-.|.+
T Consensus 24 l~~~~~~~s~~~~~~~g~F~i~lSGG-SLi~~L~~~l~~~~~~~i~w~kW~if~~DER~Vp~~~~dSNyg~~ 94 (252)
T KOG3147|consen 24 LAGYIAEKSEKALKKRGRFTLALSGG-SLIQVLSKLLESPYQDDIDWSKWHIFFVDERVVPLDDPDSNYGLA 94 (252)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCC-cHHHHHHHHhcccccCCCCccceEEEEEeccccCCCCCcccHHHH
Confidence 34445555666666667779999999 6777777777652 111233676643 2 4556665545543
No 169
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=43.91 E-value=40 Score=31.76 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
.++.+++.+|+++|++++|||.+++-
T Consensus 226 ~~~~~i~~~L~~~g~~~~did~~~~h 251 (325)
T PRK12879 226 TMPKGARQVLEKAGLTKDDIDWVIPH 251 (325)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 35678999999999999999999874
No 170
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=43.69 E-value=89 Score=30.70 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+-...+++.+|+++|++++|||.|.+..
T Consensus 28 eLa~~A~~~aL~~agl~~~dID~vi~g~ 55 (393)
T PRK08235 28 ELGGIAIKEALERANVSAEDVEEVIMGT 55 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 3345689999999999999999998754
No 171
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=43.59 E-value=38 Score=33.28 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec-CCCCCchhHHHHHHHHHHHhhcC----CCeEeec
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR-GPGMGAPLQVAAVVVRVLSQLWK----KPIVAVN 111 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~-gPg~~t~lr~g~~~ak~la~~~~----~p~~~v~ 111 (349)
...+++.+|+++|++++|||.|.+.. -|+.+.+-. .++.++..++ +|.+.|+
T Consensus 31 ~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~~----~a~~i~~~lGl~~~~p~~~V~ 87 (392)
T PRK07108 31 GGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGAN----IARQIALRAGLPVTVPGMTVN 87 (392)
T ss_pred HHHHHHHHHHHcCCCHHHCCcEEEEEeecccccccH----HHHHHHHHcCCCCCCceeeec
Confidence 34689999999999999999998754 233332211 3444444333 7777776
No 172
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=43.55 E-value=22 Score=33.49 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.0
Q ss_pred hHHhh-HHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 51 HHLEH-VLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 51 ~h~~~-l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
...+. +..+++++|+++|++++|||.++++..
T Consensus 81 ~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs 113 (290)
T PF08392_consen 81 EEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCS 113 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECc
Confidence 33443 446999999999999999999998774
No 173
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=42.78 E-value=1.1e+02 Score=28.60 Aligned_cols=90 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred CcEEEEEecCCcceeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 3 RMIALGFEGSANKIGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 3 ~m~iLgIdts~~~~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
+|++||||.+.-.+.+|..+.+...+..+.+.-+++.. +|...++++-.+ ..+|.+++..-
T Consensus 2 ~~kilGiDIGGAntk~a~~DG~~~~~d~~YlPMWk~k~--------------rL~~~Lkei~~k-----~~~~~vgvvMT 62 (330)
T COG1548 2 KMKILGIDIGGANTKIASSDGDNYKIDHIYLPMWKKKD--------------RLEETLKEIVHK-----DNVDYVGVVMT 62 (330)
T ss_pred CceEEEeeccCccchhhhccCCeeeeeEEEeccccchh--------------HHHHHHHHHhcc-----CCcceeEEEee
Q ss_pred CCC---CchhHHHHH-HHHHHHhhcCCCeEeec
Q 018903 83 PGM---GAPLQVAAV-VVRVLSQLWKKPIVAVN 111 (349)
Q Consensus 83 Pg~---~t~lr~g~~-~ak~la~~~~~p~~~v~ 111 (349)
-.+ |..-+-|+. +.+..-.+++.|+..|+
T Consensus 63 aELaD~f~tk~eGVe~Ii~~v~~Af~~pv~~v~ 95 (330)
T COG1548 63 AELADAFKTKAEGVEDIIDTVEKAFNCPVYVVD 95 (330)
T ss_pred HHHHHHhhhHHhHHHHHHHHHHHhcCCceEEEe
No 174
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=42.50 E-value=44 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
++.+++.+|+++|++++|||.+..-
T Consensus 232 ~~~~i~~~L~~~gl~~~did~~~~H 256 (329)
T PRK07204 232 LMKFIDKLLMDAGYTLADIDLIVPH 256 (329)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEeC
Confidence 5678999999999999999999864
No 175
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....
Probab=41.91 E-value=42 Score=30.99 Aligned_cols=57 Identities=26% Similarity=0.282 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeecc
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNH 112 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~h 112 (349)
...+++.+|+++++++++||.|++..--+...+..++...+........+|.+.|+.
T Consensus 30 ~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~g~~~ar~~~l~aGl~~~vp~~~V~~ 86 (264)
T PF00108_consen 30 AAEAVKAALERAGIDPEDIDAVIVGNVLQEGEGQNIARQAALAAGLPESVPATTVNR 86 (264)
T ss_dssp HHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTTTCHHHHHHHHHTTS-TTSEEEEEE-
T ss_pred HHHHHHHHHHhcccchhhhhhcCcccccccccchhhhhhhhhhcccccccceeeehh
Confidence 336899999999999999999988763321123333322222111112467777773
No 176
>PRK11440 putative hydrolase; Provisional
Probab=41.91 E-value=1e+02 Score=26.62 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=28.9
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
+..|+++|+++|=..-+|........ .++|++++++..
T Consensus 117 ~~~gi~~lii~Gv~T~~CV~~Ta~~A--~~~gy~v~vv~D 154 (188)
T PRK11440 117 RRRGIDTIVLCGISTNIGVESTARNA--WELGFNLVIAED 154 (188)
T ss_pred HHCCCCEEEEeeechhHHHHHHHHHH--HHCCCEEEEech
Confidence 34789999999887777877765443 457999998765
No 177
>PRK12379 propionate/acetate kinase; Provisional
Probab=41.84 E-value=94 Score=30.72 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=24.8
Q ss_pred cCCCeEEEEccchhcH-HHHHHHHHHHHhcCCE
Q 018903 255 CDKKDVLIVGGVGCNE-RLQEMMRTMCSERGGR 286 (349)
Q Consensus 255 ~~~~~v~lsGGVa~N~-~l~~~l~~~l~~~g~~ 286 (349)
.+++.|+++||++-|+ .+|+++-+.|...|++
T Consensus 316 ~~vDaIVFTGGIGen~~~vR~~i~~~L~~lGi~ 348 (396)
T PRK12379 316 HRLDGIIFTGGIGENSSLIRRLVMEHLAVLGLE 348 (396)
T ss_pred CCCCEEEECCccccCcHHHHHHHHhhhhhcCcE
Confidence 4799999999999776 5677777777765554
No 178
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=40.68 E-value=47 Score=32.77 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+-...+++.+|++++++++|||.|++..
T Consensus 28 eLa~~A~~~AL~~agl~~~dID~vv~g~ 55 (404)
T PRK06205 28 ELAATVIRALVERTGIDPARIDDVIFGQ 55 (404)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 3445689999999999999999998754
No 179
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=40.50 E-value=2.8e+02 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=22.3
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEee
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNP 31 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~ 31 (349)
...+|+|-++.+.-..++|.||+-++-.
T Consensus 29 k~~vGVDLGT~~iV~~vlD~d~~Pvag~ 56 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDRDGQPVAGC 56 (277)
T ss_pred ceEEEeecccceEEEEEEcCCCCeEEEE
Confidence 4578999888888778888899888754
No 180
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=40.39 E-value=43 Score=27.88 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=23.0
Q ss_pred CcEEEEEecCCcceeEEEEEcCCeEEEee
Q 018903 3 RMIALGFEGSANKIGVGVVTLDGSILSNP 31 (349)
Q Consensus 3 ~m~iLgIdts~~~~sval~~~dg~i~~~~ 31 (349)
...|+|||-+. ++++|+++.||+++.-.
T Consensus 31 ~~lIVGiDPG~-ttgiAildL~G~~l~l~ 58 (138)
T PF04312_consen 31 RYLIVGIDPGT-TTGIAILDLDGELLDLK 58 (138)
T ss_pred CCEEEEECCCc-eeEEEEEecCCcEEEEE
Confidence 34689999854 77899999999999854
No 181
>PLN03173 chalcone synthase; Provisional
Probab=39.89 E-value=70 Score=31.47 Aligned_cols=45 Identities=16% Similarity=0.091 Sum_probs=32.3
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCC
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKP 106 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p 106 (349)
...++..++.+|++.|++.+|||.+++ |||. ..+-..+...+++|
T Consensus 276 ~~~~~~~i~~~L~~~gl~~~di~~~v~--Hqgg-------~~Il~~v~~~LgL~ 320 (391)
T PLN03173 276 SKNVEKSLTEAFKPLGISDWNSLFWIA--HPGG-------PAILDQVEAKLALK 320 (391)
T ss_pred HHHHHHHHHHHHHhcCCCccccCeEEE--CCCc-------HHHHHHHHHHcCCC
Confidence 345667899999999999999999876 7764 22334555556665
No 182
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=39.77 E-value=51 Score=32.09 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
.++.+++.+|+++|++++|||.++.-
T Consensus 281 ~~~~~i~~~L~~~gl~~~dId~~v~H 306 (379)
T PLN02326 281 CVPQVIESALQKAGLTAESIDWLLLH 306 (379)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 35678999999999999999999864
No 183
>PRK12397 propionate kinase; Reviewed
Probab=39.53 E-value=1e+02 Score=30.49 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=37.4
Q ss_pred cCCCeEEEEccchhcH-HHHHHHHHHHHhcCCEE-----------EEcCC------CCCChHHHHHHHHHHHHH
Q 018903 255 CDKKDVLIVGGVGCNE-RLQEMMRTMCSERGGRL-----------FATDD------RYCVDNGAMIAYTGLLAF 310 (349)
Q Consensus 255 ~~~~~v~lsGGVa~N~-~l~~~l~~~l~~~g~~v-----------~~~~~------~~~~D~G~~iG~a~~~~~ 310 (349)
.+++.|+++||++-|+ .+|+++-+.|...|+++ +-.+. +.++|.=.+|+.-.++.+
T Consensus 320 ggvDaiVFTGGIGEns~~vR~~ic~~L~~lGi~lD~~~N~~~~~~Is~~~S~v~v~VipTnEEl~IA~~~~~l~ 393 (404)
T PRK12397 320 GGLDALVFTGGIGENSARARSAVCHNLQFLGLAVDEEKNQRNATFIQTENALVKVAVINTNEELMIAQDVMRIA 393 (404)
T ss_pred CCCCEEEECCchhhCCHHHHHHHHhhhhhcCceECHHHcCCCCCeecCCCCCceEEEECCCHHHHHHHHHHHHh
Confidence 5799999999999886 56777777777666433 11111 134666677777666655
No 184
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=39.19 E-value=1.1e+02 Score=28.48 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=33.9
Q ss_pred cCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcC
Q 018903 255 CDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 255 ~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~ 291 (349)
.|.+-+++|=|-+++..+.++|.+..++.|-++|+|.
T Consensus 85 ~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipS 121 (267)
T PRK13301 85 AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPA 121 (267)
T ss_pred cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeC
Confidence 4788899999999999999999999988888999987
No 185
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=39.06 E-value=92 Score=30.15 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=26.0
Q ss_pred CeEEEEccchhcHHHHHHHHHHHHhc-----CCEEEEcC
Q 018903 258 KDVLIVGGVGCNERLQEMMRTMCSER-----GGRLFATD 291 (349)
Q Consensus 258 ~~v~lsGGVa~N~~l~~~l~~~l~~~-----g~~v~~~~ 291 (349)
++|+|+||.++=..+.+||.+.|... .++|+.++
T Consensus 312 ~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~ 350 (393)
T PF00022_consen 312 SNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPP 350 (393)
T ss_dssp TTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T
T ss_pred cceEEecccccccchHHHHHHHhhhhhhccccceeccCc
Confidence 58999999999999999999888762 23555554
No 186
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=39.02 E-value=1.5e+02 Score=28.63 Aligned_cols=86 Identities=7% Similarity=-0.065 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcC-----CCeEEEEccchhcHHHHHHHHHHHHhcCCEEE---EcCCCCCChHHHHHHHHHHHHHHcCCCC
Q 018903 245 VEITERAMAHCD-----KKDVLIVGGVGCNERLQEMMRTMCSERGGRLF---ATDDRYCVDNGAMIAYTGLLAFAHGSST 316 (349)
Q Consensus 245 ~~~~~~~~~~~~-----~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~---~~~~~~~~D~G~~iG~a~~~~~~~~~~~ 316 (349)
-..++.++++.| ++.+++-=| |..+.+.+.+.|.-..-++. +.. +-|=.++++-.+..+.++.|+..
T Consensus 245 ~~~i~~~L~~~gl~~~did~~v~HQ~---~~~i~~~i~~~Lgl~~ek~~~~~l~~--~GNtssasip~~L~~~~~~~~~~ 319 (353)
T PRK12880 245 PKSFKEILEFSKVDEKDIAFHLFHQS---NAYLVDCIKEELKLNDDKVPNFIMEK--YANLSACSLPALLCELDTPKEFK 319 (353)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEECCC---CHHHHHHHHHHhCCCHHHhhhhhHHh--hCCHHHHHHHHHHHHHHHcCCcE
Confidence 334444555544 556776544 77777777777632111232 122 44555777777777777666543
Q ss_pred CCcccccccCccCccccccc
Q 018903 317 PLEESTFTQRFRTDEVHAVW 336 (349)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~ 336 (349)
-+ -+.+|+.|+..-+.=.|
T Consensus 320 ~l-l~~~G~G~s~g~~ll~~ 338 (353)
T PRK12880 320 AS-LSAFGAGLSWGSAVLNF 338 (353)
T ss_pred EE-EEEEchhhhheEeEEEE
Confidence 11 12367777666555555
No 187
>PRK00292 glk glucokinase; Provisional
Probab=39.01 E-value=1.1e+02 Score=28.71 Aligned_cols=94 Identities=12% Similarity=0.110 Sum_probs=58.0
Q ss_pred EEEEEecCCcceeEEEEE-cCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHH-cCCCCCCCCEEEEecC
Q 018903 5 IALGFEGSANKIGVGVVT-LDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKT-AGITPDEIDCLCYTRG 82 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~-~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~-~~i~~~did~Ia~~~g 82 (349)
++||||-+...+.+++++ .+++++...+.. ... .+.+..++++++++ .+ .++..|++..
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~-----------~~~----~~~~~~~l~~~l~~~~~---~~~~gigIg~- 63 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANGEIEQIKTYA-----------TAD----YPSLEDAIRAYLADEHG---VQVRSACFAI- 63 (316)
T ss_pred eEEEEEcCccceEEEEEecCCCceeeeEEEe-----------cCC----CCCHHHHHHHHHHhccC---CCCceEEEEE-
Confidence 489999999999999998 355555543321 110 12355677777775 33 2577777664
Q ss_pred CCCC-------ch--hHHHHHHHHHHHhhcCCC-eEeeccHHHHHHHh
Q 018903 83 PGMG-------AP--LQVAAVVVRVLSQLWKKP-IVAVNHCVAHIEMG 120 (349)
Q Consensus 83 Pg~~-------t~--lr~g~~~ak~la~~~~~p-~~~v~hh~aHa~sa 120 (349)
||.. +. ++. ..+.|.+.+++| ++-.|-..|-|++-
T Consensus 64 pG~vd~~~i~~~n~~w~~---~~~~l~~~~~~p~v~l~ND~~aaalgE 108 (316)
T PRK00292 64 AGPVDGDEVRMTNHHWAF---SIAAMKQELGLDHLLLINDFTAQALAI 108 (316)
T ss_pred eCcccCCEEEecCCCccc---CHHHHHHHhCCCeEEEEecHHHHHccc
Confidence 4422 11 221 135677788996 88778777766654
No 188
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=38.87 E-value=55 Score=30.87 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEE
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCY 79 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~ 79 (349)
.++..++.+|+++|++++|||.++.
T Consensus 228 ~~~~~~~~~L~~~gl~~~did~~~~ 252 (326)
T PRK05963 228 MMSGASQNVLASAAMTPQDIDRFFP 252 (326)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEe
Confidence 3556889999999999999999987
No 189
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=37.87 E-value=71 Score=26.85 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=27.9
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
++.++++|+++|-..-.|.+...+.. .++|+++++...
T Consensus 108 ~~~gi~~vil~G~~t~~CV~~Ta~~a--~~~g~~v~v~~D 145 (174)
T PF00857_consen 108 RKRGIDTVILCGVATDVCVLATARDA--FDRGYRVIVVED 145 (174)
T ss_dssp HHTTESEEEEEEESTTTHHHHHHHHH--HHTT-EEEEEEE
T ss_pred cccccceEEEcccccCcEEehhHHHH--HHCCCEEEEECh
Confidence 45789999999988888886665443 467999888764
No 190
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=37.64 E-value=1.5e+02 Score=28.00 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEec-CCCCC
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYTR-GPGMG 86 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~~-gPg~~ 86 (349)
-...+++++|+++|++++|||.|++.. .|+..
T Consensus 64 la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~ 96 (338)
T PRK09258 64 GAIAAGRKALAEAGIDPSDIGLLINTSVCRDYL 96 (338)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCC
Confidence 345689999999999999999997643 45544
No 191
>PRK11617 endonuclease V; Provisional
Probab=37.56 E-value=1.2e+02 Score=27.46 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=47.0
Q ss_pred EEEEEecCCcc------eeEEEEE-cCCeEEEeeeeec-cCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCE
Q 018903 5 IALGFEGSANK------IGVGVVT-LDGSILSNPRHTY-FTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDC 76 (349)
Q Consensus 5 ~iLgIdts~~~------~sval~~-~dg~i~~~~~~~~-~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~ 76 (349)
+|.|+|.|+.+ .++++++ .+.+++....... ..-+| .|-.-.+ .. .+.+-+++++.. .++|.
T Consensus 31 ~VaGvDvsy~~~~~~~~aa~Vvl~~~~~~~v~~~~~~~~~~~PY---IPG~LaF---RE-~P~~l~al~~l~---~~Pdl 100 (224)
T PRK11617 31 LIAGADVGFEQGGEVTRAAIVVLKYPSLELVEYQVARIATTMPY---IPGFLSF---RE-YPALLAAWEQLS---QKPDL 100 (224)
T ss_pred EEEEEEEEEcCCCceEEEEEEEEECCCCcEEEEEEEEeccCCCc---CcchHHH---hh-HHHHHHHHHhcC---cCCCE
Confidence 58999999854 3344444 3567776543221 12223 1221111 12 244555666544 36888
Q ss_pred EEEec----CCCCCchhHHHHHHHHHHHhhcCCCeEeec
Q 018903 77 LCYTR----GPGMGAPLQVAAVVVRVLSQLWKKPIVAVN 111 (349)
Q Consensus 77 Ia~~~----gPg~~t~lr~g~~~ak~la~~~~~p~~~v~ 111 (349)
|.|+. ||..+ | +|-.|...+++|.++|-
T Consensus 101 llvDG~G~~HPR~~-----G--lA~HlGv~~~~PtIGVA 132 (224)
T PRK11617 101 VFVDGHGIAHPRRL-----G--VASHFGLLVDVPTIGVA 132 (224)
T ss_pred EEEcCceeECCCCc-----c--eeeEEEeecCCCEEEEE
Confidence 88875 34322 1 12234455688998874
No 192
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=37.43 E-value=58 Score=31.47 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
++..++.+|+++|++.+|||.+++.
T Consensus 244 ~~~~i~~~L~~~gl~~~did~~v~H 268 (353)
T PRK12880 244 EPKSFKEILEFSKVDEKDIAFHLFH 268 (353)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 4578999999999999999999974
No 193
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=37.27 E-value=64 Score=30.59 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
..++..++.+|+++|++++|||.+++-
T Consensus 239 ~~~~~~~~~~L~~~g~~~~did~~i~H 265 (338)
T PRK09258 239 ELAVDTWEAFLAQLGWAVEQVDRVICH 265 (338)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEecC
Confidence 345568999999999999999999863
No 194
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=37.21 E-value=1.4e+02 Score=25.39 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=28.3
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
++.|+++|+++|-..-.|.+...... .+.|+++++...
T Consensus 110 ~~~gi~~vvi~G~~t~~CV~~Ta~~A--~~~Gy~v~vv~D 147 (179)
T cd01015 110 TARGVDTLIVAGCSTSGCIRATAVDA--MQHGFRPIVVRE 147 (179)
T ss_pred HHcCCCEEEEeeecccHhHHHHHHHH--HHCCCeEEEeec
Confidence 55799999998887777776665433 467999888764
No 195
>PLN02854 3-ketoacyl-CoA synthase
Probab=37.01 E-value=82 Score=32.33 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=26.7
Q ss_pred hHHhhH-HHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 51 HHLEHV-LPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 51 ~h~~~l-~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
+..+.+ ..+++++|+++|++++|||.|+++..|-
T Consensus 186 ~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~ 220 (521)
T PLN02854 186 AEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLF 220 (521)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCC
Confidence 333333 3689999999999999999999876654
No 196
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=36.29 E-value=3.1e+02 Score=24.49 Aligned_cols=95 Identities=22% Similarity=0.226 Sum_probs=47.2
Q ss_pred cEEEEEecCCcc---e--eEEEEEc--CCeEEEeeeee-ccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCC
Q 018903 4 MIALGFEGSANK---I--GVGVVTL--DGSILSNPRHT-YFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEID 75 (349)
Q Consensus 4 m~iLgIdts~~~---~--sval~~~--dg~i~~~~~~~-~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did 75 (349)
.+|.|+|.|+.. . +++++-+ +++++...... .+.-+| .|-...+ +=.+.+...+++.. ...|
T Consensus 26 ~~I~gvDiS~~~~~~~~vaa~Vv~~~~~~~~~~~~~~~~~~~~PY---IPG~Laf----RE~p~l~~~~~~l~---~~PD 95 (208)
T cd06559 26 RLVAGVDVSYKKDGDLAVAAAVVLDYPDLEVVETAVAVGEVTFPY---IPGLLAF----REGPPLLEALEKLK---TKPD 95 (208)
T ss_pred cEEEEEEeeeccCCCeEEEEEEEEECCCCcEEEEEEEEEecCCCC---cchhHHH----hhHHHHHHHHHhCC---CCCC
Confidence 368999998762 2 2233332 57776644211 112222 1221111 11233555566543 3689
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeec
Q 018903 76 CLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVN 111 (349)
Q Consensus 76 ~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~ 111 (349)
.|.++.+ |..=.-|.| +|-.|...+++|.++|-
T Consensus 96 lilVDG~-G~~HpR~~G--lA~HlGv~l~~PtIGVA 128 (208)
T cd06559 96 LLLVDGH-GIAHPRRFG--LASHLGVLLDLPTIGVA 128 (208)
T ss_pred EEEEeCC-ccccCCCcc--hhheeeeecCCCEEEEE
Confidence 9998852 221111222 33345566789999874
No 197
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=36.28 E-value=56 Score=26.61 Aligned_cols=26 Identities=38% Similarity=0.701 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
...+++++|+++|++++|||.+=+..
T Consensus 24 p~~A~~~al~~ag~~~~did~~Ei~E 49 (123)
T PF02803_consen 24 PVPAARKALERAGLTPDDIDVIEINE 49 (123)
T ss_dssp HHHHHHHHHHHHT--GGGESEEEE--
T ss_pred HHHHHHHHHHHhCCCccccchhhccc
Confidence 34689999999999999999998763
No 198
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=36.17 E-value=83 Score=26.56 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=35.6
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHHhhhhcC
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEMGRIVTG 125 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~sa~~~s~ 125 (349)
.+.+.+.++..|++.+++..+++.+++ |||- .++-..+...++.+ .++..|....+...|
T Consensus 39 ~~~i~~~~~~~L~~~g~~~~~~~~wav--HPGG-------~~ILd~v~~~L~L~----~~~l~~Sr~vLr~yG 98 (151)
T PF02797_consen 39 SDNIPPFVEDLLARHGLSDWDILFWAV--HPGG-------RKILDAVEEALGLS----PEQLRASREVLREYG 98 (151)
T ss_dssp HHHHHHHHHHHHHGGTCCSGGGSEEEE--E-SS-------HHHHHHHHHHHTS-----GGGGHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhcccccccceeee--cCCh-------HHHHHHHHHHcCCC----HHHHHHHHHHHHhcC
Confidence 346778899999999987556555655 8873 22333444455554 355666666655544
No 199
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=36.14 E-value=78 Score=28.72 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHH
Q 018903 58 PLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIE 118 (349)
Q Consensus 58 ~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~ 118 (349)
.+++++|+++|++++||+.|++..--|.++. -+-..+++.|...-.+.=+.+.++-|++.
T Consensus 106 ~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~P-glD~~l~~~LgL~~~v~R~~i~~~GC~gg 165 (226)
T PF00195_consen 106 EAARKALAEAGLDPSDITHLVTVSCTGIAAP-GLDARLINRLGLRPDVQRTPIFGMGCAGG 165 (226)
T ss_dssp HHHHHHHHHHTS-GGGECEEEEEESSSSECS--HHHHHHHHHT--TTSEEEEEES-GGGHH
T ss_pred HHHHHHHHHcCCCCcccceEEEEecCCcCCC-chhHHHHhcCCCCCCcEEEEEeccchhhH
Confidence 4788899999999999999987665444322 01122344444333444445555555443
No 200
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.99 E-value=3e+02 Score=26.57 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=60.5
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEeeeee-------c-cCC------------CCCCCcchhhhh----hH----Hhh
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNPRHT-------Y-FTP------------PGQGFLPRETAQ----HH----LEH 55 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~~~~-------~-~~~------------~~~g~~p~~~~~----~h----~~~ 55 (349)
|.++-+|.....+.++++. +|++++....+ + +.+ .-++..|..... .. ...
T Consensus 193 ~~vav~~Igat~s~l~vi~-~gk~ly~r~~~~g~~Qlt~~i~r~~~L~~~~a~~~k~~~~~P~~y~~~vl~~f~~~l~~e 271 (354)
T COG4972 193 MKVAVFDIGATSSELLVIQ-DGKILYTREVPVGTDQLTQEIQRAYSLTEEKAEEIKRGGTLPTDYGSEVLRPFLGELTQE 271 (354)
T ss_pred hhheeeeecccceEEEEEE-CCeeeeEeeccCcHHHHHHHHHHHhCCChhHhHHHHhCCCCCCchhHHHHHHHHHHHHHH
Confidence 4567777888889999999 99998865211 0 000 012223431111 11 112
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHH
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAH 116 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aH 116 (349)
+-..|+..+...+ ..+||.|..+.|-+...| ++..+.+.+++|+..++-....
T Consensus 272 i~Rslqfy~~~s~--~~~id~i~LaGggA~l~g------L~~~i~qrl~~~t~vanPf~~~ 324 (354)
T COG4972 272 IRRSLQFYLSQSE--MVDIDQILLAGGGASLEG------LAAAIQQRLSIPTEVANPFAYM 324 (354)
T ss_pred HHHHHHHHHhccc--cceeeEEEEecCCcchhh------HHHHHHHHhCCCeEeeCHHHHH
Confidence 3346666677665 458999998844333222 4556778888998776664433
No 201
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=35.64 E-value=4.1e+02 Score=25.52 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=26.1
Q ss_pred eEEEEeCCeeEEEEEeCCcEEE-EeecccchhhHHHHHHHhHcC
Q 018903 130 VVLYVSGGNTQVIAYSEGRYRI-FGETIDIAVGNCLDRFARVLT 172 (349)
Q Consensus 130 ~~l~i~gg~~~~~~~~~g~~~~-~~~~~~~S~Gr~~Dava~lLG 172 (349)
+++++.++.+.+....++++.. ...+.+-.+..+|+.+++.+.
T Consensus 188 lvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~ 231 (344)
T PRK13917 188 SVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHIS 231 (344)
T ss_pred EEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHH
Confidence 3444444555555455555422 122466788899999999983
No 202
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=35.59 E-value=47 Score=32.76 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeeccHHHHHHH
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHCVAHIEM 119 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh~aHa~s 119 (349)
.+...|+.+|+++|+ ++|||+|... +.|.-.+ - ..=.+.|...++.|+-.+-....|..+
T Consensus 281 ~~~~am~~AL~~Agl-~~~IdyI~ah-gtgT~~~--D-~~E~~Ai~~~f~~pvsS~Ks~~GH~l~ 340 (398)
T PRK06519 281 DLEASLERLLKPAGG-LAAPTAVISG-ATGAHPA--T-AEEKAALEAALAGPVRGIGTLFGHTME 340 (398)
T ss_pred HHHHHHHHHHHHCCC-cccCCEEEeC-CCCCCCc--c-HHHHHHHHHHcCCCccccchhhccchH
Confidence 456799999999999 7999998643 3332111 0 011234444555666555555555443
No 203
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.55 E-value=1.2e+02 Score=31.43 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=46.7
Q ss_pred cEEEEEecCCc---ce----eEEEEEcCCeEEEeeeeecc-----CCCCCCCcchhhhhhHHhhHH---HHHHHHHHHcC
Q 018903 4 MIALGFEGSAN---KI----GVGVVTLDGSILSNPRHTYF-----TPPGQGFLPRETAQHHLEHVL---PLVKSALKTAG 68 (349)
Q Consensus 4 m~iLgIdts~~---~~----sval~~~dg~i~~~~~~~~~-----~~~~~g~~p~~~~~~h~~~l~---~~i~~~L~~~~ 68 (349)
|.|+|||..+. .. +++++. ||+++-....++. .+++ .|+.-.....--|. .-+-.+|+
T Consensus 2 ~~I~GVDI~~g~p~~~~p~yAvv~~~-dg~~~~k~~~s~~rllrli~~~---kpDIvAvDnvyEL~~~~~~li~il~--- 74 (652)
T COG2433 2 MVIMGVDIVSGSPRGKAPLYAVVILE-DGEIVEKGEVSLRRLLRLIWSY---KPDIVAVDNVYELGADKRDLIRILK--- 74 (652)
T ss_pred ceEEEEeeecCCCCCcCcceeEEEEe-cCcEEeehhhhHHHHHHHHHhc---CCCEEEeccHHHHhcChhHHHHHHH---
Confidence 78999997532 22 577776 9988765432210 0111 12211111111111 12233333
Q ss_pred CCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCe
Q 018903 69 ITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPI 107 (349)
Q Consensus 69 i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~ 107 (349)
.-|.....|=||.+||-+..|. .||..+++|+
T Consensus 75 ~lP~~tkLVQVTg~~g~~~sL~-------~lArr~G~~~ 106 (652)
T COG2433 75 RLPEGTKLVQVTGRPGEQESLW-------ELARRHGIRV 106 (652)
T ss_pred hCCCCceEEEEeCCCCCcchHH-------HHHHHhCCCC
Confidence 3356688899999998766542 4566666554
No 204
>PLN03169 chalcone synthase family protein; Provisional
Probab=35.48 E-value=84 Score=30.87 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCC
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKP 106 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p 106 (349)
..+++.++++|+++|++++|+|-+.+-.||+. .| +.+.+++.+++|
T Consensus 281 ~~~~~~i~~~L~~~gl~~~did~~~~v~Hq~n---~~----il~~v~~~Lgl~ 326 (391)
T PLN03169 281 DNIEGFCKKLMKKAGLVEKDYNDLFWAVHPGG---PA----ILNRLEKKLKLA 326 (391)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcceEEecCCC---HH----HHHHHHHHcCCC
Confidence 34667889999999999989983322338874 23 333455555555
No 205
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=34.49 E-value=62 Score=31.15 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 57 LPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 57 ~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
..+++.+|+++|++++|||.|++....+
T Consensus 90 ~~Aa~~aL~~a~~~~~~Id~li~~s~~~ 117 (361)
T cd00831 90 EEAARGALDEAGLRPSDIDHLVVNTSTG 117 (361)
T ss_pred HHHHHHHHHHhCCCHHHCCEEEEECCCC
Confidence 3689999999999999999998755444
No 206
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=34.38 E-value=1.8e+02 Score=27.65 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=25.2
Q ss_pred CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEE
Q 018903 256 DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFA 289 (349)
Q Consensus 256 ~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~ 289 (349)
.++.|+|+||.+.=..|.+.|.+.+ ++++.+
T Consensus 274 ~i~~I~L~Ggga~l~gL~~~l~~~l---~~~v~~ 304 (340)
T PF11104_consen 274 SIERIYLSGGGARLPGLAEYLSEEL---GIPVEV 304 (340)
T ss_dssp --SEEEEESGGGGSTTHHHHHHHHH---TSEEEE
T ss_pred CCCEEEEECCccchhhHHHHHHHHH---CCceEE
Confidence 4789999999998899999999887 677655
No 207
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=34.30 E-value=89 Score=31.11 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
...+++.+|+++|+++++||.|++..-
T Consensus 33 ~~~a~~~al~~agl~~~~ID~vi~G~~ 59 (428)
T PRK08963 33 GKMVVGELLARSEIDPELIEQLVFGQV 59 (428)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEecc
Confidence 356899999999999999999988754
No 208
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.18 E-value=2e+02 Score=30.03 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=22.2
Q ss_pred cEEEEEecCCcceeEEEEEcCCeEEEee
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSILSNP 31 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i~~~~ 31 (349)
..|+|||-+. ++++|+++.||+++...
T Consensus 244 ~lIVGIDPGi-TtgiAvldldGevl~~~ 270 (652)
T COG2433 244 SLIVGIDPGI-TTGIAVLDLDGEVLDLE 270 (652)
T ss_pred ceEEEeCCCc-eeeEEEEecCCcEEeee
Confidence 3689999854 67899999999999854
No 209
>PLN02932 3-ketoacyl-CoA synthase
Probab=33.85 E-value=1e+02 Score=31.36 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=24.9
Q ss_pred hHHhhHH-HHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 51 HHLEHVL-PLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 51 ~h~~~l~-~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
++.+.+. .+++++|+++|++++|||.|++...
T Consensus 146 ~ea~~la~~Aa~~aL~~agi~p~dId~lIv~ts 178 (478)
T PLN02932 146 KETEEVIIGAVDNLFRNTGISPSDIGILVVNSS 178 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcc
Confidence 3444444 6899999999999999999976553
No 210
>PRK04262 hypothetical protein; Provisional
Probab=33.74 E-value=58 Score=31.24 Aligned_cols=27 Identities=19% Similarity=0.557 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
..++..++.+|+++|++++|||.+++-
T Consensus 209 ~~~~~~i~~~L~~~gl~~~dId~~v~H 235 (347)
T PRK04262 209 KHIISAAKGLMEKLGLKPSDYDYAVFH 235 (347)
T ss_pred HHHHHHHHHHHHHhCcCHHHhceeecC
Confidence 457789999999999999999999874
No 211
>PRK00292 glk glucokinase; Provisional
Probab=33.27 E-value=1.1e+02 Score=28.71 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEccchhc--HHHHH-HHHHHHHhcC--------CEEEEcCCCCCChHH
Q 018903 232 LCYSLQETLFAMLVEITERAMAHCDKK-DVLIVGGVGCN--ERLQE-MMRTMCSERG--------GRLFATDDRYCVDNG 299 (349)
Q Consensus 232 iA~~~q~~l~~~l~~~~~~~~~~~~~~-~v~lsGGVa~N--~~l~~-~l~~~l~~~g--------~~v~~~~~~~~~D~G 299 (349)
+|..+-+...+.+...+..+...++.+ .|++.||+..| ..+.. .+.+.+.++. .++++ ..++.+
T Consensus 229 ~A~~~~~~~~~~lg~~i~~l~~~~~P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~a 304 (316)
T PRK00292 229 LCRRTLSLFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYV----ITHPQP 304 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEE----EcCCCh
Confidence 344444445555555555555667787 89999998753 33333 4455444322 22332 234455
Q ss_pred HHHHHHHH
Q 018903 300 AMIAYTGL 307 (349)
Q Consensus 300 ~~iG~a~~ 307 (349)
-.+|++.+
T Consensus 305 gl~GAa~~ 312 (316)
T PRK00292 305 GLLGAGAY 312 (316)
T ss_pred HHHHHHHH
Confidence 66787665
No 212
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=33.24 E-value=1.9e+02 Score=25.66 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
...+++++|+++|++++|||.|.+..
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~ 36 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGT 36 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEE
Confidence 34689999999999999999997664
No 213
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=33.18 E-value=68 Score=31.49 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
-...+++.+|+++|++++|||.|++..
T Consensus 29 La~~A~~~AL~~agl~~~dID~vi~g~ 55 (393)
T PRK05656 29 LGAAVIRRLLEQTGLDPAQVDEVILGQ 55 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEEE
Confidence 344689999999999999999998754
No 214
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=33.09 E-value=1.1e+02 Score=25.48 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=29.5
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
++.++++|+++|-..-.|.+...+. +.+.|+++++...
T Consensus 95 ~~~gi~~viv~G~~td~CV~~Ta~~--a~~~g~~v~vi~D 132 (155)
T cd01014 95 REAGIDHLVICGAMTEMCVDTTVRS--AFDLGYDVTVVAD 132 (155)
T ss_pred HHCCCCEEEEEeeccchhHHHHHHH--HHHCCCcEEEecc
Confidence 4578999999998888888877653 3467999988764
No 215
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=32.35 E-value=1.2e+02 Score=30.66 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=34.4
Q ss_pred CCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHH
Q 018903 256 DKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYT 305 (349)
Q Consensus 256 ~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a 305 (349)
...+|.++||-+.|..+.+.+...+ +-+||.-. ++|..++|.|
T Consensus 442 ~~~rilvtGGAS~N~~Ilq~iadVf---~apVy~~~----~~~sa~lG~A 484 (545)
T KOG2531|consen 442 PPTRILVTGGASRNEAILQIIADVF---GAPVYTIE----GPNSAALGGA 484 (545)
T ss_pred CCceEEEecCccccHHHHHHHHHHh---CCCeEeec----CCchhhHHHH
Confidence 3468999999999999999999876 56888874 6666777664
No 216
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=32.25 E-value=83 Score=30.95 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=35.4
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhc---CCCeEeec
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLW---KKPIVAVN 111 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~---~~p~~~v~ 111 (349)
.+-...+++.+|+++|++++|||.+.+..-|..+.+.- ..+..++..+ ++|...|+
T Consensus 30 ~~L~~~A~~~Al~dagl~~~dID~~i~~~~~~~~~~~~---~~a~~l~~~lG~~~~~~~~V~ 88 (392)
T PRK06065 30 QELAWEAASKALDEAGLELKDIDCVVIGSAPDAFDGVH---MKGEYLSHGSGGIRKPVSRVY 88 (392)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCcccccc---cHHHHHHHHcCCCCCCeEEEe
Confidence 34455789999999999999999998764344443321 1222233322 36776665
No 217
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=32.12 E-value=74 Score=29.68 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
.+...++.+|+++|++++|||.+++.
T Consensus 224 ~~~~~i~~~l~~~g~~~~di~~~~~h 249 (320)
T cd00830 224 LMPESIEEALEKAGLTPDDIDWFVPH 249 (320)
T ss_pred hhHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 35678999999999999999999874
No 218
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=32.06 E-value=5.6e+02 Score=26.03 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=22.2
Q ss_pred HhhHHHHHHHHHHHcCCCCCCC--CEEEEec
Q 018903 53 LEHVLPLVKSALKTAGITPDEI--DCLCYTR 81 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~di--d~Ia~~~ 81 (349)
.+.+-..|++=++++|++++|| ++..++.
T Consensus 65 ~~~i~~~V~~ey~~Agi~~~die~~ahIITg 95 (475)
T PRK10719 65 EAAIKELIEEEYQKAGIAPESIDSGAVIITG 95 (475)
T ss_pred HHHHHHHHHHHHHHcCCCHHHccccEEEEEe
Confidence 4456678889999999999987 4566663
No 219
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=31.85 E-value=62 Score=27.18 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=20.9
Q ss_pred cEEEEEecCCcceeEEEEEcCCeE
Q 018903 4 MIALGFEGSANKIGVGVVTLDGSI 27 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~~dg~i 27 (349)
|+|++||.+....+.|+++.++..
T Consensus 1 mii~sIDiGikNlA~~iie~~~~~ 24 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEGNK 24 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCCCe
Confidence 789999999999999999954543
No 220
>PLN00415 3-ketoacyl-CoA synthase
Probab=31.80 E-value=86 Score=31.69 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
+..+++++|+++|++++|||.|+++.-|-
T Consensus 138 i~~A~~~aL~~aGi~p~dID~LIvs~T~~ 166 (466)
T PLN00415 138 IFGALNSLFKKTGIEPREVGIFIVNCSLF 166 (466)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCC
Confidence 34689999999999999999998776543
No 221
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=31.77 E-value=2.2e+02 Score=25.27 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=28.6
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
+..++++|+++|=..-.|++..... +...|+++++...
T Consensus 142 ~~~gi~~lvi~G~~t~~CV~~Ta~~--a~~~g~~v~vv~D 179 (212)
T PTZ00331 142 KAHGVRRVFICGLAFDFCVLFTALD--AVKLGFKVVVLED 179 (212)
T ss_pred HHCCCCEEEEEEeccCHHHHHHHHH--HHHCCCEEEEeCc
Confidence 4579999999988777887777543 3457999888654
No 222
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=31.73 E-value=1.7e+02 Score=26.17 Aligned_cols=44 Identities=7% Similarity=-0.119 Sum_probs=30.7
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHH
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNG 299 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G 299 (349)
+..|+++|+++|=..-.|....... ..++|+++++... .|.|.+
T Consensus 147 r~~gI~~lvi~Gv~T~~CV~sTar~--A~~~Gy~v~vv~D-a~a~~~ 190 (226)
T TIGR03614 147 RARGIRNLVFTGIATNVCVESTLRD--GFHLEYFGVVLED-ATHQAG 190 (226)
T ss_pred HHCCCCEEEEeccCccHhHHHHHHH--HHHCCCEEEEech-hccCCC
Confidence 4579999998887777776666543 3467999888765 455543
No 223
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=31.63 E-value=2.4e+02 Score=30.33 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCcEEEEEecCCcc-eeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 2 KRMIALGFEGSANK-IGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 2 ~~m~iLgIdts~~~-~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
+...+||+|-+... +.+|+++.-|+++..... +|.... .........+..+.... .|+.|++.
T Consensus 328 ~~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~I----------yp~~p~-~~~~~~~~~l~~l~~~~-----~Ve~iaIG 391 (780)
T COG2183 328 KPKATLGLDPGFRTGCKVAVVDDTGKLLDTATI----------YPHPPV-NQSDKAEATLKDLIRKY-----KVELIAIG 391 (780)
T ss_pred CCcceeecCCccccccEEEEEcCCCceeceeEE----------EcCCCc-cchHHHHHHHHHHHHHh-----CceEEEEe
Confidence 34468999988776 899999966888775432 122111 11223333445555443 57788887
Q ss_pred cCCCCCchhHHHHHHHHHHHhhc---CCCeEeeccHHHHHHH
Q 018903 81 RGPGMGAPLQVAAVVVRVLSQLW---KKPIVAVNHCVAHIEM 119 (349)
Q Consensus 81 ~gPg~~t~lr~g~~~ak~la~~~---~~p~~~v~hh~aHa~s 119 (349)
.| |+.|....+...+-... +++.+-|+.--|-.++
T Consensus 392 ng----TaSrete~fv~~vl~~~~~~~~~~viVsEagAsvYs 429 (780)
T COG2183 392 NG----TASRETEKFVADVLKELPKEKVLKVIVSEAGASVYS 429 (780)
T ss_pred cC----CcchhHHHHHHHHHHhccCCCCcEEEEcccccchhc
Confidence 76 45565566655554443 4555666765444433
No 224
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=31.56 E-value=1.3e+02 Score=28.15 Aligned_cols=73 Identities=7% Similarity=0.023 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----eEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHH
Q 018903 226 ECTPADLCYSLQETLFAMLVEITERAMAHCDKK----DVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAM 301 (349)
Q Consensus 226 ~~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~----~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~ 301 (349)
....+++|..+-+...+.+.+.++......+.+ .++..||.+ ..+...+.+.+ |++..++|+ ..+..-+
T Consensus 206 g~~~~~~A~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~g--~~~~~~la~~l---g~~~v~~p~--~~~v~~A 278 (290)
T PF01968_consen 206 GLSVEEAAEGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGAG--PLHAPELAEEL---GIPRVVPPH--YAGVANA 278 (290)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEE-------------------------------------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccccccc--ccccccccccc---ccccccccc--ccccccc
Confidence 356789999998888889999988885444543 355556654 34455555544 565444442 1233444
Q ss_pred HHHH
Q 018903 302 IAYT 305 (349)
Q Consensus 302 iG~a 305 (349)
+|++
T Consensus 279 ~Ga~ 282 (290)
T PF01968_consen 279 IGAA 282 (290)
T ss_dssp ----
T ss_pred cccc
Confidence 4544
No 225
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=31.34 E-value=65 Score=31.46 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=23.8
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
.+-...+++.+|+++|++++|||.|++..
T Consensus 23 ~~La~~A~~~AL~dAgl~~~dID~vi~~~ 51 (386)
T cd00751 23 DDLGAAVIKALLERAGLDPEEVDDVIMGN 51 (386)
T ss_pred HHHHHHHHHHHHHhcCCCHHHCCEEEEEe
Confidence 33445689999999999999999998753
No 226
>PTZ00280 Actin-related protein 3; Provisional
Probab=31.08 E-value=59 Score=32.07 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHhc
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSER 283 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~~ 283 (349)
.++|+|+||.++=..+.+||.+.+.+.
T Consensus 313 ~~nIvL~GG~s~~~Gf~eRL~~El~~~ 339 (414)
T PTZ00280 313 YKNIVLSGGSTMFKGFDKRLQRDVRKR 339 (414)
T ss_pred hhcEEEeCCcccCcCHHHHHHHHHHHh
Confidence 458999999999999999999988763
No 227
>PTZ00452 actin; Provisional
Probab=30.74 E-value=54 Score=31.96 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHhc
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSER 283 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~~ 283 (349)
.++|+|+||.++=..+.+||.+.+.+.
T Consensus 294 ~~nIvL~GG~Sl~~Gf~~RL~~El~~~ 320 (375)
T PTZ00452 294 CRNIVLSGGTTLFPGIANRLSNELTNL 320 (375)
T ss_pred hccEEEecccccccCHHHHHHHHHHHh
Confidence 469999999999889999999988753
No 228
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=30.66 E-value=86 Score=30.65 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=23.9
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
.+-...+++.+|+++|++++|||.|++..
T Consensus 22 ~~La~~A~~~Al~dAgl~~~dID~vv~g~ 50 (386)
T TIGR01930 22 EDLGAAVIKELLERNPLDPELIDDVIFGN 50 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 34455789999999999999999998753
No 229
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=30.59 E-value=83 Score=28.11 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
..+...++.+|+++|++++|+|.|...
T Consensus 145 ~~~~~~i~~~l~~ag~~~~did~~~~h 171 (254)
T cd00327 145 EGLARAARKALEGAGLTPSDIDYVEAH 171 (254)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEcc
Confidence 345578999999999999999999764
No 230
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=30.58 E-value=79 Score=30.99 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.0
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
.+-...+++.+|+++|++++|||.|++..
T Consensus 27 ~~L~~~a~~~al~dagi~~~dID~vi~g~ 55 (388)
T PRK06366 27 PQLGGAAIKAVIDDAKLDPALVQEVIMGN 55 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 34445789999999999999999998753
No 231
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=30.52 E-value=2.4e+02 Score=23.80 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=35.1
Q ss_pred cEEEEEecCCcc-----eeEEEEEcCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCC
Q 018903 4 MIALGFEGSANK-----IGVGVVTLDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGIT 70 (349)
Q Consensus 4 m~iLgIdts~~~-----~sval~~~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~ 70 (349)
-++|.||.|+.. +.-|+.+ +++++-...... .|..+.......+...++.++++-++.
T Consensus 2 ~~~LslD~STs~~~~~gTG~A~~~-~~~~~~~si~~~--------~k~Ks~~ER~k~ias~Lk~ii~~~d~~ 64 (159)
T PF07066_consen 2 KKVLSLDFSTSSKKGEGTGWAFFK-GSDLVVGSIKAK--------HKSKSFFERAKSIASELKTIIQKYDLK 64 (159)
T ss_pred CeeEEEEEecccCCCCCceeEEec-CCeEEEeeeeec--------CcccCHHHHHHHHHHHHHHHHHHhCCC
Confidence 368999988876 8999999 888754332110 122222333344555677777776653
No 232
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=30.40 E-value=1e+02 Score=29.49 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=37.0
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEec----CCCCCchhHHHHHHHHHHHhhcCCCeEeecc
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTR----GPGMGAPLQVAAVVVRVLSQLWKKPIVAVNH 112 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~----gPg~~t~lr~g~~~ak~la~~~~~p~~~v~h 112 (349)
.+.+...++++|++.|++++.|+.|+.-. -||. ..++..++.|+..++-
T Consensus 207 ~e~i~~ai~~~L~~~~i~~~~i~~iatid~K~~E~gL-----------~~~a~~lg~pl~~~~~ 259 (315)
T PRK05788 207 AEEIAEAVERALEALNIDPRAVKAIASITLKKDEPGL-----------LQLAEELGVPFITFSK 259 (315)
T ss_pred HHHHHHHHHHHHHHcCCCHHHccEEeeeeccCCCHHH-----------HHHHHHhCCCeEEeCH
Confidence 34567789999999999999999998543 1321 3567788899888763
No 233
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=30.39 E-value=3.2e+02 Score=27.04 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHHHhcCC
Q 018903 244 LVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMCSERGG 285 (349)
Q Consensus 244 l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~ 285 (349)
..+...+.++-+|-..+||+||-+.=-.-.+.++.+. +.|+
T Consensus 70 kl~ff~~~r~~fGrtAlvlsGGg~~G~~h~Gv~kaL~-e~gl 110 (391)
T cd07229 70 KLDFFHDTRQSFGRTALVLQGGSIFGLCHLGVVKALW-LRGL 110 (391)
T ss_pred HHHHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHHHH-HcCC
Confidence 3566667777799999999999887766667666544 4555
No 234
>PLN03168 chalcone synthase; Provisional
Probab=30.26 E-value=97 Score=30.44 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 58 PLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 58 ~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
.+.+++|+++|++++|||.|++...
T Consensus 107 ~Aa~~AL~~ag~~~~dId~lI~~T~ 131 (389)
T PLN03168 107 EAAQKAIKEWGGRKSDITHIVFATT 131 (389)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECC
Confidence 5889999999999999999976544
No 235
>PF13941 MutL: MutL protein
Probab=30.08 E-value=4.5e+02 Score=26.56 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=52.2
Q ss_pred EEEEecCCcceeEEEEE---cCCeEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCC-CCCCEEEEec
Q 018903 6 ALGFEGSANKIGVGVVT---LDGSILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITP-DEIDCLCYTR 81 (349)
Q Consensus 6 iLgIdts~~~~sval~~---~dg~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~-~did~Ia~~~ 81 (349)
+|.+|.++..|.+.+++ ++.++++..+.. +.+.| ..-...+..+++++-++.+.+. .+.|.+.++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~ap------TTv~~----~Dv~~G~~~A~~~l~~~~~~~~~~~~~~~la~S 71 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAP------TTVEP----GDVTIGLNNALEQLEEQTPASPDDGYDKVLACS 71 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCC------CCcCc----ccHHHHHHHHHHHHHHhcCCCcccCceEEEEEC
Confidence 78999999999999998 346777754311 11111 1223344556667666665443 3455554444
Q ss_pred CCCCCchhHH---------HHHHHHHHHhhcCCCeEeec
Q 018903 82 GPGMGAPLQV---------AAVVVRVLSQLWKKPIVAVN 111 (349)
Q Consensus 82 gPg~~t~lr~---------g~~~ak~la~~~~~p~~~v~ 111 (349)
..+ .|||+ -...||..|...+..++.+-
T Consensus 72 SAa--GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~ 108 (457)
T PF13941_consen 72 SAA--GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVY 108 (457)
T ss_pred CCC--CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 332 23332 22345666666666665443
No 236
>PF05908 DUF867: Protein of unknown function (DUF867); InterPro: IPR008585 This family consists of a number of bacterial and phage proteins with no known function and which are found in Bacillus species and the Lambda-like viruses.; PDB: 3A9L_A.
Probab=29.77 E-value=70 Score=28.32 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=21.3
Q ss_pred CeEEEEccchhcHHHHHHHHHHHHhcCCEE--EEcCCCCCC
Q 018903 258 KDVLIVGGVGCNERLQEMMRTMCSERGGRL--FATDDRYCV 296 (349)
Q Consensus 258 ~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v--~~~~~~~~~ 296 (349)
...++.||- |..|++.|.+.|...||++ -..|..++|
T Consensus 104 ~~~v~vGG~--d~~l~~~i~~~L~~~Gf~v~~~~~~~~l~G 142 (194)
T PF05908_consen 104 EETVYVGGR--DRELREAIAEALEKAGFTVELASSPDRLAG 142 (194)
T ss_dssp S--EEEESS---HHHHHHHHHHHHHTT-----EE--SS---
T ss_pred CCEEEECCC--CHHHHHHHHHHHHHcCCceeecCCCcccCC
Confidence 367788884 9999999999999999987 444443433
No 237
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=29.69 E-value=86 Score=30.83 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
-...+++.+|+++|++++|||.|++..
T Consensus 34 L~~~a~~~aL~~Agi~~~dID~vi~G~ 60 (397)
T PRK06954 34 LGAAAIAAAVERAGLKPEQIDEVVMGC 60 (397)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEEEEe
Confidence 345689999999999999999998763
No 238
>PF14239 RRXRR: RRXRR protein
Probab=29.61 E-value=96 Score=27.01 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=23.6
Q ss_pred EEEEEecCCcceeEEEEEcCCeEEEeeee
Q 018903 5 IALGFEGSANKIGVGVVTLDGSILSNPRH 33 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~i~~~~~~ 33 (349)
..||||.++..+++|++. +.+++.....
T Consensus 52 i~lgiDpGsk~tGiav~~-~~~vl~~~el 79 (176)
T PF14239_consen 52 IRLGIDPGSKTTGIAVVS-EKKVLWAAEL 79 (176)
T ss_pred EEEEECCCCCeEEEEEEe-CCEEEEEeEe
Confidence 579999999999999999 7788776543
No 239
>PLN02666 5-oxoprolinase
Probab=29.33 E-value=1.7e+02 Score=33.68 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----eEEEEccchhcHHHHHHHHHHHHhcCCE-EEEcCC
Q 018903 227 CTPADLCYSLQETLFAMLVEITERAMAHCDKK----DVLIVGGVGCNERLQEMMRTMCSERGGR-LFATDD 292 (349)
Q Consensus 227 ~~~~diA~~~q~~l~~~l~~~~~~~~~~~~~~----~v~lsGGVa~N~~l~~~l~~~l~~~g~~-v~~~~~ 292 (349)
...+++|..+.+.+.+.+.+-++......|.+ .++.-||-+ ...--.|.+.| |++ |++|+.
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~~l~afGGag--p~ha~~lA~~l---gi~~vivP~~ 519 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANHALACFGGAG--PQHACAIARAL---GMSEVFVHRY 519 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEecCcH--HHHHHHHHHHc---CCCEEEeCCC
Confidence 56789999999999999999999988877765 455556632 22233344443 674 889873
No 240
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=29.19 E-value=2.5e+02 Score=26.15 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+-...+++.+|++++++++|||.|++..
T Consensus 50 ~l~~~a~~~aL~~ag~~~~~Id~li~~~ 77 (324)
T cd00827 50 TMAVEAARRALERAGIDPDDIGLLIVAT 77 (324)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 3345689999999999999999998654
No 241
>PRK09051 beta-ketothiolase; Provisional
Probab=28.83 E-value=97 Score=30.47 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=23.7
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
.+-...+++.+|+++|++++|||.|.+..
T Consensus 28 ~eL~~~A~~~AL~~agi~~~dID~vi~g~ 56 (394)
T PRK09051 28 TDLGATVVREALARAGVDPDQVGHVVFGH 56 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcCEEEEee
Confidence 33445689999999999999999998753
No 242
>PRK06840 hypothetical protein; Validated
Probab=28.73 E-value=98 Score=29.37 Aligned_cols=25 Identities=36% Similarity=0.687 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
+..+++.+|+++|++++|||.+...
T Consensus 239 ~~~~i~~~L~~~gl~~~did~~~~h 263 (339)
T PRK06840 239 FLKVIREALRKSGYTPKDIDYLAIL 263 (339)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 4578999999999999999998753
No 243
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=28.69 E-value=69 Score=23.87 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=13.2
Q ss_pred HHHcCCCCCCCCEEEEec
Q 018903 64 LKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 64 L~~~~i~~~did~Ia~~~ 81 (349)
|+++|++++|||.+....
T Consensus 1 L~~~g~~~~did~~i~hq 18 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQ 18 (90)
T ss_dssp HHHTT--GGGESEEEE-S
T ss_pred CccccCCHHHCCEEEeCC
Confidence 688999999999999754
No 244
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=28.68 E-value=96 Score=30.55 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.8
Q ss_pred HhhHH-HHHHHHHHHcCCCCCCCCEEEEec
Q 018903 53 LEHVL-PLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 53 ~~~l~-~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
...|. .+++.+|+++|+++++||.|++..
T Consensus 27 ~~~L~~~a~~~al~~agi~~~~Id~vv~G~ 56 (392)
T PRK06633 27 APMLAAHLIKDILQNSKIDPALVNEVILGQ 56 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcCEEEEEe
Confidence 33444 689999999999999999998864
No 245
>PTZ00107 hexokinase; Provisional
Probab=28.50 E-value=3.4e+02 Score=27.43 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=18.0
Q ss_pred EEEEEecCCcceeEEEEEcCCe
Q 018903 5 IALGFEGSANKIGVGVVTLDGS 26 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg~ 26 (349)
.+|+||-+....=|++++.+|+
T Consensus 75 ~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred eEEEEecCCceEEEEEEEeCCC
Confidence 4799999999999999986553
No 246
>PLN03170 chalcone synthase; Provisional
Probab=28.47 E-value=1.4e+02 Score=29.56 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
...++..++.+|+++|++..|+|.+++ |||
T Consensus 280 ~~~i~~~v~~~L~~~gl~~~di~~~v~--Hqg 309 (401)
T PLN03170 280 SKNIERSLEEAFKPLGITDYNSIFWVA--HPG 309 (401)
T ss_pred HHHHHHHHHHHHHhcCCCccccCeEEe--cCC
Confidence 344667899999999999999999876 776
No 247
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=28.46 E-value=1.7e+02 Score=27.57 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecC
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTRG 82 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~g 82 (349)
...+.+.+|+++|++++|||.|.+...
T Consensus 56 a~~Aa~~aL~~ag~~~~dId~li~~~~ 82 (329)
T PRK07204 56 GAEAAKKAVEDAKLTLDDIDCIICASG 82 (329)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 446899999999999999999987653
No 248
>PTZ00466 actin-like protein; Provisional
Probab=28.39 E-value=66 Score=31.46 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHh
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSE 282 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~ 282 (349)
.++|+|+||.++=..+.+||.+.+..
T Consensus 299 ~~nIvL~GG~Sl~~Gf~~RL~~EL~~ 324 (380)
T PTZ00466 299 YSHIVLSGGTTMFHGFGDRLLNEIRK 324 (380)
T ss_pred hhcEEEeCCccccCCHHHHHHHHHHH
Confidence 56999999999988999999998865
No 249
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=28.37 E-value=91 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=22.4
Q ss_pred EEEEecCCcceeEEEEEcCCeEEEeeee
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILSNPRH 33 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~~~~~ 33 (349)
++|||.+-+...+|+++.+|+++....+
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~ 28 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKF 28 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEE
Confidence 5899999999999999967766655443
No 250
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.84 E-value=1e+02 Score=28.83 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
.+..+++.+|+++|++++|||.+..-
T Consensus 220 ~~~~~i~~~l~~~g~~~~di~~~~~h 245 (319)
T PRK09352 220 ELAKVAREALEAAGLTPEDIDWLVPH 245 (319)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 35568999999999999999999863
No 251
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.74 E-value=1.8e+02 Score=28.36 Aligned_cols=54 Identities=28% Similarity=0.478 Sum_probs=35.6
Q ss_pred hhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecC--CCCCchhHHHHHHHHHHHh
Q 018903 47 ETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRG--PGMGAPLQVAAVVVRVLSQ 101 (349)
Q Consensus 47 ~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~g--Pg~~t~lr~g~~~ak~la~ 101 (349)
+++..-++-.-..+.+|+++++++.+|+|.|+=+.| -|+-+.-.+|. +.++||.
T Consensus 60 LtresV~elV~dtl~e~~k~A~l~i~DL~FVVRSTGV~Agf~speevg~-~I~ALA~ 115 (445)
T TIGR03285 60 LTRESVAELVKDTLKESLKKAGLDIDDLDFVVRSTGVTAGFASPEEVGE-MIKALAD 115 (445)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCChhhccEEEeccceeeccCCHHHHHH-HHHHHHh
Confidence 444444455556889999999999999999997665 24444444443 3344543
No 252
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=27.67 E-value=2.7e+02 Score=25.23 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=48.1
Q ss_pred cCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCCCCCcccccccCccCccccc
Q 018903 255 CDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSSTPLEESTFTQRFRTDEVHA 334 (349)
Q Consensus 255 ~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (349)
.|..-+|++=|...+.-..++|.+..++.|.++++|+ |. ..+...++.+....++.+. ++.-+=++
T Consensus 60 aGkhVl~~s~gAlad~e~~~~l~~aA~~~g~~l~i~s-------Ga---i~g~d~l~a~~ig~~~~V~----i~~~k~p~ 125 (229)
T TIGR03855 60 NGKDLLIMSVGALADRELRERLREVARSSGRKVYIPS-------GA---IGGLDALKAASLGRIERVV----LTTTKPPA 125 (229)
T ss_pred CCCCEEEECCcccCCHHHHHHHHHHHHhcCCEEEECh-------HH---HHHHHHHHhcccCCceEEE----EEEecChH
Confidence 4777888888877788889999999988899999985 22 2345566777765555443 44444455
Q ss_pred ccc
Q 018903 335 VWR 337 (349)
Q Consensus 335 ~~~ 337 (349)
.|+
T Consensus 126 ~~~ 128 (229)
T TIGR03855 126 SLG 128 (229)
T ss_pred Hhc
Confidence 555
No 253
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=27.65 E-value=2.6e+02 Score=24.26 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=27.0
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
+..++++|+++|=..-+|.+...... .+.|+++++...
T Consensus 134 ~~~~i~~lii~G~~t~~CV~~T~~~a--~~~g~~v~v~~D 171 (196)
T cd01011 134 RERGIDRVDVVGLATDYCVKATALDA--LKAGFEVRVLED 171 (196)
T ss_pred HHCCCCEEEEEEecccHHHHHHHHHH--HHCCCEEEEecc
Confidence 45799999988877777766664433 346999877653
No 254
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=27.58 E-value=67 Score=30.96 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=22.6
Q ss_pred CeEEEEccchhcHHHHHHHHHHHHhc
Q 018903 258 KDVLIVGGVGCNERLQEMMRTMCSER 283 (349)
Q Consensus 258 ~~v~lsGGVa~N~~l~~~l~~~l~~~ 283 (349)
++|+|+||.++=..+.+||.+.+...
T Consensus 293 ~nIvltGG~s~i~Gl~~RL~~el~~~ 318 (373)
T smart00268 293 ENIVLSGGSTLIPGFGERLEKELKQL 318 (373)
T ss_pred hCeEeecccccCcCHHHHHHHHHHHh
Confidence 57999999999899999999888654
No 255
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=27.17 E-value=75 Score=23.55 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=24.9
Q ss_pred EEEEccchhcHHHHHHHHHHHHhcCCEEEEc
Q 018903 260 VLIVGGVGCNERLQEMMRTMCSERGGRLFAT 290 (349)
Q Consensus 260 v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~ 290 (349)
++.+.|++.+..+..++++.+.+.|+++.+.
T Consensus 4 vvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~ 34 (90)
T PF02302_consen 4 VVCGSGIGTSLMVANKIKKALKELGIEVEVS 34 (90)
T ss_dssp EEESSSSHHHHHHHHHHHHHHHHTTECEEEE
T ss_pred EECCChHHHHHHHHHHHHHHHHhccCceEEE
Confidence 5667889988888899999999888765443
No 256
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=27.08 E-value=1.8e+02 Score=27.56 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=24.2
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHhcCCEEE
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSERGGRLF 288 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~ 288 (349)
++.|+|+||.+.-..+.+.+.+.+ +.++.
T Consensus 283 i~~I~LtGgga~~~gl~~~l~~~l---~~~v~ 311 (348)
T TIGR01175 283 LDGLVLAGGGATLSGLDAAIYQRL---GLPTE 311 (348)
T ss_pred cceEEEECccccchhHHHHHHHHH---CCCeE
Confidence 678999999999999999999887 45443
No 257
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=26.86 E-value=57 Score=31.28 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=32.1
Q ss_pred hhcHHHHHHHHHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCCCC
Q 018903 267 GCNERLQEMMRTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSSTP 317 (349)
Q Consensus 267 a~N~~l~~~l~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~~~ 317 (349)
=.|..+++.+.+.|.-..-++++.=..+-|=.+++|-.+..+.++.|+..+
T Consensus 250 Qan~ri~~~i~~~l~~~~~k~~~~~~~yGNtsaAsiplaL~~~~~~g~ik~ 300 (323)
T COG0332 250 QANLRIIEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALDEALREGRIKP 300 (323)
T ss_pred cccHHHHHHHHHHcCCCHHHHhhHHHHhcccccchHHHHHHHHhhhCCCCC
Confidence 468888888887763211133332223566667777888888888888743
No 258
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=26.76 E-value=1.7e+02 Score=31.00 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCC-CeEeeccHHHHHHHhhh
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKK-PIVAVNHCVAHIEMGRI 122 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~-p~~~v~hh~aHa~sa~~ 122 (349)
++...++++|+++++++++||.|....|.-....+| +.+...++. |...++--+|-|.+|.+
T Consensus 335 r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~------~~l~~~fg~~~~~~~nPdeaVA~GAAi 397 (657)
T PTZ00186 335 RSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVV------EEVKKFFQKDPFRGVNPDEAVALGAAT 397 (657)
T ss_pred HHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHH------HHHHHHhCCCccccCCCchHHHHhHHH
Confidence 345567888999999999999999887754333322 334444443 44555655666655433
No 259
>PLN03172 chalcone synthase family protein; Provisional
Probab=26.73 E-value=1.4e+02 Score=29.49 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=24.9
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYTRGPGM 85 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~ 85 (349)
...+++.++.+|++.|++..|||.+++ |||.
T Consensus 276 ~~~i~~~~~~~L~~~gl~~~di~~~~~--Hqgg 306 (393)
T PLN03172 276 SKNIEKSLVEAFAPIGINDWNSIFWIA--HPGG 306 (393)
T ss_pred HHHHHHHHHHHhhhcCCCccccceEEe--cCCc
Confidence 344667889999999999999999875 7764
No 260
>PLN03170 chalcone synthase; Provisional
Probab=26.46 E-value=1e+02 Score=30.40 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCCCCCEEEEec
Q 018903 58 PLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 58 ~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
.+.+++|+++|++++|||.|++..
T Consensus 112 ~Aa~~AL~~ag~~~~dId~lI~~T 135 (401)
T PLN03170 112 AAAQKAIKEWGQPKSKITHLVFCT 135 (401)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEc
Confidence 578999999999999999875444
No 261
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=26.40 E-value=91 Score=30.17 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
++..|+.+|+++|++++|||.|+.-
T Consensus 273 ~~~~i~~~L~~~gl~~~dId~~~~H 297 (372)
T PRK07515 273 VAEHIVEHLAENGLTPADVKRFWLH 297 (372)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEC
Confidence 6678999999999999999999864
No 262
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=26.27 E-value=1.8e+02 Score=28.78 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHH-HHHHhhcCCCeEeeccHHHHHHHhhhhcC
Q 018903 58 PLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVV-RVLSQLWKKPIVAVNHCVAHIEMGRIVTG 125 (349)
Q Consensus 58 ~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~a-k~la~~~~~p~~~v~hh~aHa~sa~~~s~ 125 (349)
.+..+++++... .+++|++..|-| ||-.|+..+ |.+ .+++|+++|+.+.||+...-+..+
T Consensus 203 Tig~EIl~ql~~---~~~AI~vpVGGG---GLiaGIat~vk~~--~p~vkIIGVEt~~a~~f~~sl~~g 263 (457)
T KOG1250|consen 203 TIGLEILEQLKE---PDGAIVVPVGGG---GLIAGIATGVKRV--GPHVKIIGVETEGAHSFNASLKAG 263 (457)
T ss_pred hHHHHHHHhhcC---CCCeEEEecCCc---hhHHHHHHHHHHh--CCCCceEEEeecCcHHHHHHHhcC
Confidence 357788887542 466999888754 444454332 333 358999999999999887666554
No 263
>PLN03169 chalcone synthase family protein; Provisional
Probab=26.11 E-value=88 Score=30.73 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCCCCCCCEEEEecCCCCC
Q 018903 58 PLVKSALKTAGITPDEIDCLCYTRGPGMG 86 (349)
Q Consensus 58 ~~i~~~L~~~~i~~~did~Ia~~~gPg~~ 86 (349)
.+.+++|+++|++++|||.|++..-|++.
T Consensus 112 ~Aa~~aL~~ag~~~~dId~lI~~t~t~~~ 140 (391)
T PLN03169 112 EASLACIKEWGRPVSDITHLVYVSSSEAR 140 (391)
T ss_pred HHHHHHHHHhCCCHHHCCEEEEECcCCCC
Confidence 58999999999999999997665556543
No 264
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=26.09 E-value=3.8e+02 Score=24.94 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec-CCCC
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR-GPGM 85 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~-gPg~ 85 (349)
...+++++|+++|+++++||.|.+.. .|+.
T Consensus 57 a~~A~~~al~~ag~~~~~Id~li~~~~~~~~ 87 (325)
T PRK12879 57 AIKAAERALARAGLDAEDIDLIIVATTTPDY 87 (325)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEcCCCCC
Confidence 44689999999999999999997654 3443
No 265
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=25.94 E-value=67 Score=31.44 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCC
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTRGPGMG 86 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~ 86 (349)
+-...+++.+|+++|++++|||.|++...|..+
T Consensus 26 eL~~eAa~~Al~dAgl~~~dID~iv~~~~~~~~ 58 (386)
T PRK08313 26 GLVREAIDRALADAGLTWDDIDAVVVGKAPDFF 58 (386)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEecccccc
Confidence 344568999999999999999999886555544
No 266
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=25.92 E-value=1.2e+02 Score=29.58 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
.+..+++.+|+++|++++|||.|-.. +.|
T Consensus 275 ~~~~a~~~Al~~Agi~~~dId~i~~h-gtg 303 (407)
T cd00828 275 GIARAIRTALAKAGLSLDDLDVISAH-GTS 303 (407)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEecc-ccc
Confidence 34568999999999999999999643 444
No 267
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=25.87 E-value=2.5e+02 Score=25.77 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=30.5
Q ss_pred cCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcC
Q 018903 255 CDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 255 ~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~ 291 (349)
.|..-++++-|...+..+.++|.+..++.|..+++|+
T Consensus 84 ~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 84 NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence 4667788887777899999999999888888998864
No 268
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=25.77 E-value=1.2e+02 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
...+++.+|++++++++|||.|++..
T Consensus 27 ~~~a~~~Al~~agl~p~dID~vi~g~ 52 (393)
T cd00826 27 GAKAIAAALEPAGVAAGAVEEACLGQ 52 (393)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEE
Confidence 34588899999999999999988754
No 269
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=25.70 E-value=1.8e+02 Score=25.64 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=28.1
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
+..++++|+++|=..-.|++...... ..+|+++++...
T Consensus 138 ~~~gi~~lii~G~~T~~CV~~Ta~dA--~~~gy~v~v~~D 175 (212)
T PRK11609 138 REHGITELIVMGLATDYCVKFTVLDA--LALGYQVNVITD 175 (212)
T ss_pred HHcCCCEEEEEEeccCHHHHHHHHHH--HHCCCEEEEEee
Confidence 45789999888877777777776543 457999888764
No 270
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=25.69 E-value=1.4e+02 Score=28.09 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEccchh----cHHHHHHHHHHHHhcCCEE
Q 018903 237 QETLFAMLVEITERAMAHCDKKDVLIVGGVGC----NERLQEMMRTMCSERGGRL 287 (349)
Q Consensus 237 q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~----N~~l~~~l~~~l~~~g~~v 287 (349)
-+.+.+.+++-+..+.-.+..+.+.+||=.+. -+-++++|++..+..|+..
T Consensus 254 ~~~l~e~vvK~v~tllps~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~ 308 (374)
T COG2441 254 YNALIEGVVKDVFTLLPSTYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGI 308 (374)
T ss_pred HHHHHHHHHHHHHHhccccCcceEEEeeecccccchhhHHHHHHHHHHhhcCccc
Confidence 34566666666666655566778888887442 2677788887777777743
No 271
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=25.58 E-value=1.4e+02 Score=25.51 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=27.9
Q ss_pred CCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCCeEeec
Q 018903 71 PDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVN 111 (349)
Q Consensus 71 ~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~ 111 (349)
.++.|+|+++.||++..-+..-..+.+.+ ...++|+++|-
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~-~~~~~PilGIC 79 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREA-RERKIPILGIC 79 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHH-HHTTSEEEEET
T ss_pred hcCCCEEEECCcCCccccccccccccccc-cccceEEEEEe
Confidence 45899999999999876534334444332 23689999986
No 272
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=25.45 E-value=2.1e+02 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHHH
Q 018903 237 QETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTMC 280 (349)
Q Consensus 237 q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~l 280 (349)
+..+++.|++.+.+.++....+.|+|.+.--....|++.|...+
T Consensus 71 ~~~Fa~~vA~~L~~~~~~~~~~~LvlvA~p~~LG~LR~~L~~~~ 114 (138)
T PF10116_consen 71 EERFAREVADRLEKARRAGKFDRLVLVAPPRFLGLLREHLSKAV 114 (138)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHhCHHH
Confidence 45556777777778888889999999998766666666665544
No 273
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.32 E-value=1.7e+02 Score=25.33 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=29.3
Q ss_pred HHcCCCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcCC
Q 018903 253 AHCDKKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATDD 292 (349)
Q Consensus 253 ~~~~~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~~ 292 (349)
+..++++|+++|...--|+........ +.|+++++...
T Consensus 129 r~~~i~~l~v~G~~td~CV~~T~~~A~--~~gy~v~v~~d 166 (205)
T COG1335 129 RNLGIDTVVVCGIATDICVLATARDAF--DLGYQVTLVED 166 (205)
T ss_pred HHCCCCEEEEeeeehhHHHHHHHHHHH--HCCCeEEEehh
Confidence 447899999999988888887766543 67999877654
No 274
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=25.00 E-value=90 Score=29.73 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=25.4
Q ss_pred CCCeEEEEcc--chhcH-HHHHHHHHHHHhcCCEEEEcC
Q 018903 256 DKKDVLIVGG--VGCNE-RLQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 256 ~~~~v~lsGG--Va~N~-~l~~~l~~~l~~~g~~v~~~~ 291 (349)
+...|+|||= .+.+. .+.+++.+.|+ .++++-.
T Consensus 262 ~~~~IvLSGs~g~~r~~~~v~~~I~~~L~---~~V~~L~ 297 (326)
T TIGR03281 262 KEAGVVLAGSGGTLREPINFSGKIKRVLS---CKVLVLD 297 (326)
T ss_pred CCCcEEEeCcchhccCchHHHHHHHHHhC---CCeEEec
Confidence 4458999987 88888 99999999885 4555543
No 275
>PTZ00004 actin-2; Provisional
Probab=24.90 E-value=74 Score=30.95 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHh
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSE 282 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~ 282 (349)
.++|+|+||.++=..+.+||.+.+..
T Consensus 297 ~~nIvl~GG~s~~~Gf~~RL~~EL~~ 322 (378)
T PTZ00004 297 YGNIVLSGGTTMYRGLPERLTKELTT 322 (378)
T ss_pred HhhEEeccchhcCcCHHHHHHHHHHH
Confidence 46899999999888999999888875
No 276
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=24.75 E-value=81 Score=30.38 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=22.9
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHh
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSE 282 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~ 282 (349)
.++|+|+||.++=..|.++|.+.+..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~ 315 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLK 315 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHH
Confidence 46899999999999999999998874
No 277
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=24.73 E-value=1.5e+02 Score=27.58 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
...+++++|+++|+++++||.|.+..
T Consensus 54 a~~A~~~al~~ag~~~~~Id~li~~~ 79 (320)
T cd00830 54 AVEAAKKALEDAGIDADDIDLIIVAT 79 (320)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 44689999999999999999997754
No 278
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=24.66 E-value=1.1e+02 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=28.5
Q ss_pred CCCcEEEEEecCCcceeEEEEEcCCeEEEeee
Q 018903 1 MKRMIALGFEGSANKIGVGVVTLDGSILSNPR 32 (349)
Q Consensus 1 m~~m~iLgIdts~~~~sval~~~dg~i~~~~~ 32 (349)
|..|+++.||.++...=+-|++.||+++.+.+
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~ 33 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERR 33 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcceeeeec
Confidence 66789999999999999999998999998764
No 279
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=24.63 E-value=2.8e+02 Score=24.97 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHH
Q 018903 239 TLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMM 276 (349)
Q Consensus 239 ~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l 276 (349)
.+++.+.+.++.+.++.+.=+|+||||-.-...+....
T Consensus 11 ~~a~~i~~~i~~~i~~~~~~~lalsGGstp~~~y~~L~ 48 (233)
T TIGR01198 11 ALAERIATKLQTALAERGQFSLALSGGRSPIALLEALA 48 (233)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEECCCccHHHHHHHHh
Confidence 34555566666665666667899999976655544433
No 280
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=24.63 E-value=1.6e+02 Score=29.07 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
-...+++.+|+++|++++|||.+.+..
T Consensus 29 L~~~a~~~al~~agi~~~~Id~v~~G~ 55 (401)
T PRK08131 29 LAATVIRRLLEKSGFPGDDIEDVILGC 55 (401)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 344689999999999999999998754
No 281
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=24.56 E-value=2e+02 Score=25.23 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHHHHHHH---HHhcCCEEEEcC--CCCCChHHHHHHH
Q 018903 238 ETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRTM---CSERGGRLFATD--DRYCVDNGAMIAY 304 (349)
Q Consensus 238 ~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~---l~~~g~~v~~~~--~~~~~D~G~~iG~ 304 (349)
+.+++.+.+.+....++.+.-.|+|+||-.-........... +....+.+|.-. -++.+|...-.+.
T Consensus 3 ~~~a~~i~~~i~~~i~~~~~~~i~LsgGstp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~ 74 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAERGRAVIALSGGSTPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRM 74 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEE--SCTHHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHH
Confidence 345666677777776777778999999976554444333322 221223444432 1345666554443
No 282
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=24.50 E-value=1.1e+02 Score=27.43 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEccchhcHHHHH
Q 018903 238 ETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQE 274 (349)
Q Consensus 238 ~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~ 274 (349)
..+++.+++.++...++.+.-+|+||||-.--..+..
T Consensus 5 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~ 41 (219)
T cd01400 5 EALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYEL 41 (219)
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEEECCCccHHHHHHH
Confidence 4456667777777767667678999999766544433
No 283
>PLN02362 hexokinase
Probab=24.31 E-value=4.9e+02 Score=26.70 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=17.3
Q ss_pred EEEEEecCCcceeEEEEEcCC
Q 018903 5 IALGFEGSANKIGVGVVTLDG 25 (349)
Q Consensus 5 ~iLgIdts~~~~sval~~~dg 25 (349)
.+|+||-+....=|++++.+|
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g 116 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQLGG 116 (509)
T ss_pred eEEEEecCCceEEEEEEEecC
Confidence 379999999888899988554
No 284
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=24.23 E-value=1.1e+02 Score=29.25 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+-...+.+.+|+++|++++|||.|++..
T Consensus 52 ~la~~Aa~~aL~~agl~~~dID~li~~s 79 (345)
T TIGR00748 52 TIGVEAARNALKRAKIDPKDIGAVYVGS 79 (345)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 3345689999999999999999997643
No 285
>KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
Probab=23.95 E-value=82 Score=29.28 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
..|+|+..|+.+|++++|||.|-++.
T Consensus 295 PvPAI~~vLKksGlkl~DiDl~EvNE 320 (396)
T KOG1391|consen 295 PVPAISGVLKKSGLKLKDIDLVEVNE 320 (396)
T ss_pred CcHHHHHHHHHcCCcccccceEEech
Confidence 34789999999999999999998864
No 286
>PLN03173 chalcone synthase; Provisional
Probab=23.93 E-value=1.5e+02 Score=29.13 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCCCCCEEEEec
Q 018903 58 PLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 58 ~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
.+++++|+++|++++|||.|++..
T Consensus 108 ~Aa~~AL~~ag~~~~dId~li~~t 131 (391)
T PLN03173 108 EAAAKAIKEWGQPKSKITHLVFCT 131 (391)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEc
Confidence 579999999999999999975443
No 287
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=23.93 E-value=1.5e+02 Score=28.40 Aligned_cols=29 Identities=24% Similarity=0.568 Sum_probs=24.4
Q ss_pred HHhhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 52 HLEHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 52 h~~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
.......+++.+|+++|++++|||.++.-
T Consensus 206 ~~~~~~~~~~~~L~~~gl~~~did~~i~H 234 (345)
T TIGR00748 206 YFHHVVTAAKGLMEKLGLTPEDFDYAVFH 234 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcCEEEeC
Confidence 34455678999999999999999999975
No 288
>PLN02287 3-ketoacyl-CoA thiolase
Probab=23.69 E-value=1.3e+02 Score=30.25 Aligned_cols=28 Identities=18% Similarity=0.509 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
+-...+++.+|+++|++++|||.|++..
T Consensus 73 eLa~eA~~~AL~dAgl~~~dID~vv~G~ 100 (452)
T PLN02287 73 DLLAPVLKAVVEKTGLNPSEVGDIVVGT 100 (452)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 3445689999999999999999998654
No 289
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=23.56 E-value=2.1e+02 Score=28.26 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHc-CCCCCCCCEEEEec
Q 018903 55 HVLPLVKSALKTA-GITPDEIDCLCYTR 81 (349)
Q Consensus 55 ~l~~~i~~~L~~~-~i~~~did~Ia~~~ 81 (349)
-...+++.+|+++ |++++|||.|.+..
T Consensus 34 La~~A~~~AL~~a~gl~~~dID~vi~g~ 61 (399)
T PRK09052 34 LLAHVLRSAVAQVPGLDPKLIEDAIVGC 61 (399)
T ss_pred HHHHHHHHHHHhccCcCHHHCCEEEEEe
Confidence 3446899999997 99999999998763
No 290
>PLN03172 chalcone synthase family protein; Provisional
Probab=23.44 E-value=2.3e+02 Score=27.84 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCCCCCCEEEEec
Q 018903 58 PLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 58 ~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
.+.+++|+++|++++|||.|++..
T Consensus 108 ~Aa~~aL~~ag~~~~dId~ii~~t 131 (393)
T PLN03172 108 EAAAKAIKEWGQPKSKITHLVFCT 131 (393)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEc
Confidence 578999999999999999875443
No 291
>PLN03171 chalcone synthase-like protein; Provisional
Probab=23.38 E-value=1.4e+02 Score=29.42 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCCCCCCCEEEE-ecCCCCC
Q 018903 58 PLVKSALKTAGITPDEIDCLCY-TRGPGMG 86 (349)
Q Consensus 58 ~~i~~~L~~~~i~~~did~Ia~-~~gPg~~ 86 (349)
.+.+++|+++|++++|||.|++ |.-|..+
T Consensus 114 ~Aa~~aL~~ag~~~~dId~li~~t~t~~~~ 143 (399)
T PLN03171 114 EAAKKAIAEWGRPAADITHLVVTTNSGAHI 143 (399)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCC
Confidence 5899999999999999999975 3344433
No 292
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=23.34 E-value=1.5e+02 Score=29.08 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
...+++.+|++++++++|||.|++..
T Consensus 30 ~~~a~~~aL~~agi~~~~Id~v~~G~ 55 (387)
T PRK07850 30 LGAVQRAVLDRAGIDPGDVEQVIGGC 55 (387)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 34689999999999999999998764
No 293
>PTZ00281 actin; Provisional
Probab=23.33 E-value=72 Score=31.07 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.3
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHhc
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSER 283 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~~ 283 (349)
.++|+|+||.++=..+.+||.+.+...
T Consensus 295 ~~nIvl~GG~s~~~Gf~~RL~~El~~~ 321 (376)
T PTZ00281 295 YGNVVLSGGTTMFPGIADRMNKELTAL 321 (376)
T ss_pred HhhccccCccccCcCHHHHHHHHHHHh
Confidence 468999999999999999999888753
No 294
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=23.33 E-value=1.6e+02 Score=28.25 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHc--CCCCCCCCEEEEe
Q 018903 54 EHVLPLVKSALKTA--GITPDEIDCLCYT 80 (349)
Q Consensus 54 ~~l~~~i~~~L~~~--~i~~~did~Ia~~ 80 (349)
..++..++++|+++ |++.+|||.++.-
T Consensus 259 ~~~~~~i~~~L~~~~~g~~~~did~~~~H 287 (361)
T cd00831 259 KNLERVLRKLLARLGIGLFKLAFDHWCVH 287 (361)
T ss_pred HHHHHHHHHHhccccCCCccccceEEEEC
Confidence 34667899999999 9999999999863
No 295
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.21 E-value=99 Score=24.14 Aligned_cols=31 Identities=35% Similarity=0.446 Sum_probs=25.2
Q ss_pred EEEEccchhcHHHHHHHHHHHHhcCCEEEEcC
Q 018903 260 VLIVGGVGCNERLQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 260 v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~ 291 (349)
||.+|| +.-+.+.+++++.++++|+++-+..
T Consensus 5 l~C~~G-aSSs~la~km~~~a~~~gi~~~i~a 35 (99)
T cd05565 5 VLCAGG-GTSGLLANALNKGAKERGVPLEAAA 35 (99)
T ss_pred EECCCC-CCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 444666 9999999999999999999876653
No 296
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.16 E-value=1.4e+02 Score=29.05 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHH
Q 018903 57 LPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVL 99 (349)
Q Consensus 57 ~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~l 99 (349)
+..++++|+++|++++|||.++... | +.|+-..+++.|
T Consensus 275 ~~~i~~~L~~~gl~~~DId~~v~Hq-~----n~~~~~~v~~~l 312 (378)
T PRK06816 275 IKPLLELVDKRNLDPDDIDYFLPHY-S----SEYFREKIVELL 312 (378)
T ss_pred HHHHHHHHHHcCCChhhCCEEeeCc-c----cHHHHHHHHHHH
Confidence 6788999999999999999998643 1 344444455544
No 297
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=23.14 E-value=1.4e+02 Score=27.99 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCCC
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKKP 106 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~p 106 (349)
+...++.+|+++|++++|||.+++. ++. ..+.+.++..+++|
T Consensus 221 ~~~~~~~~l~~~g~~~~di~~~~~h--~~~-------~~~~~~~~~~lgi~ 262 (318)
T TIGR00747 221 MGDVVEETLEANGLDPEDIDWFVPH--QAN-------LRIIEALAKRLELD 262 (318)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEC--CCC-------HHHHHHHHHHcCCC
Confidence 4567899999999999999999863 322 22334455566665
No 298
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=22.97 E-value=1.5e+02 Score=29.41 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 55 HVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 55 ~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
-...+++.+|+++|++++|||.|++.
T Consensus 30 L~~~A~~~Al~dAgl~~~dID~vi~g 55 (426)
T PRK08170 30 LAVAAGRALLNRQPFAPDDLDEVILG 55 (426)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 34468999999999999999999864
No 299
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=22.78 E-value=1.5e+02 Score=29.11 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.3
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
.+-...+++.+|+++|++++|||.|++.
T Consensus 26 ~~L~~~a~~~al~dAgl~~~~ID~vv~g 53 (394)
T PLN02644 26 TELGSIAIQAALERAGVDPALVQEVFFG 53 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 3444578999999999999999999874
No 300
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=22.71 E-value=1.3e+02 Score=23.48 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcCCEEEEcC
Q 018903 272 LQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 272 l~~~l~~~l~~~g~~v~~~~ 291 (349)
.++++.+.|++.++++|.|.
T Consensus 15 ~~~~~~~~L~~~g~~v~~P~ 34 (113)
T PF05014_consen 15 RVERLREALEKNGFEVYSPQ 34 (113)
T ss_dssp HHHHHHHHHHTTTTEEEGGC
T ss_pred HHHHHHHHHHhCCCEEEecc
Confidence 33344444444444444443
No 301
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=22.59 E-value=2.5e+02 Score=23.26 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=15.2
Q ss_pred cceeEEEEEcCCeEEEeeeee
Q 018903 14 NKIGVGVVTLDGSILSNPRHT 34 (349)
Q Consensus 14 ~~~sval~~~dg~i~~~~~~~ 34 (349)
.+.|+||++ ||+++..+...
T Consensus 95 SSPS~ALfK-dGelvh~ieRh 114 (136)
T PF06491_consen 95 SSPSIALFK-DGELVHFIERH 114 (136)
T ss_dssp -SSEEEEEE-TTEEEEEE-GG
T ss_pred CCchheeee-CCEEEEEeehh
Confidence 467999999 99999877433
No 302
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=22.22 E-value=1.9e+02 Score=27.34 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEE
Q 018903 56 VLPLVKSALKTAGITPDEIDCLC 78 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia 78 (349)
-..++...|.++|+++.+|+.++
T Consensus 78 n~~av~haL~~~G~~~~~V~lvv 100 (318)
T PF06406_consen 78 NLVAVHHALLKAGLEPQDVDLVV 100 (318)
T ss_dssp HHHHHHHHHHHHS--SSEEEEEE
T ss_pred hHHHHHHHHHHcCCCCCCeEEEe
Confidence 34578999999999887777444
No 303
>PRK04262 hypothetical protein; Provisional
Probab=21.54 E-value=2e+02 Score=27.49 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=22.8
Q ss_pred HhhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 53 LEHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 53 ~~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
.+-...+++.+|+++|++++|||.|.+.
T Consensus 52 ~~la~~Aa~~aL~~ag~~~~dId~li~~ 79 (347)
T PRK04262 52 ATIAVEAARNALKRAGIDPKEIGAVYVG 79 (347)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 3344578999999999999999998654
No 304
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=21.39 E-value=2.8e+02 Score=23.17 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEE
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFA 289 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~ 289 (349)
.+.|+++||= ++..-...+.+.+++.|+++.+
T Consensus 62 ~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l 93 (147)
T TIGR02826 62 ISCVLFLGGE-WNREALLSLLKIFKEKGLKTCL 93 (147)
T ss_pred CCEEEEechh-cCHHHHHHHHHHHHHCCCCEEE
Confidence 4679999998 6665555566667777886655
No 305
>PRK13410 molecular chaperone DnaK; Provisional
Probab=21.14 E-value=2.1e+02 Score=30.41 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEecCCCCCchhHHHHHHHHHHHhhcCC-CeEeeccHHHHHHHh
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTRGPGMGAPLQVAAVVVRVLSQLWKK-PIVAVNHCVAHIEMG 120 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg~~t~lr~g~~~ak~la~~~~~-p~~~v~hh~aHa~sa 120 (349)
+++...++.+|+++++++++||.|....|......+ .+.+...++. |...++.-+|-|.+|
T Consensus 309 ~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V------~~~l~~~fg~~~~~~~npdeaVA~GA 370 (668)
T PRK13410 309 DRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMV------QQLVRTLIPREPNQNVNPDEVVAVGA 370 (668)
T ss_pred HHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHH------HHHHHHHcCCCcccCCCCchHHHHhH
Confidence 345567888999999999999999988775433322 2233444443 334455555555544
No 306
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=21.10 E-value=4e+02 Score=22.82 Aligned_cols=66 Identities=21% Similarity=0.375 Sum_probs=37.1
Q ss_pred EEEEecCCcceeEEEEEc--CC--eEEEeeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHc----CCCCCCCCEE
Q 018903 6 ALGFEGSANKIGVGVVTL--DG--SILSNPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTA----GITPDEIDCL 77 (349)
Q Consensus 6 iLgIdts~~~~sval~~~--dg--~i~~~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~----~i~~~did~I 77 (349)
+.|||-+++..++.+.+. +| +++..... +.+|+. .-.....+.+...|+++++++ |+ +++.|
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~-----~s~gi~--~G~I~d~~~~~~~I~~ai~~ae~~~~~---~i~~V 70 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEV-----PSRGIR--KGVIVDIEAAARAIREAVEEAERMAGV---KIDSV 70 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEe-----cCCCcc--CcEEECHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 468999999888887752 45 45554322 122221 111222334455677777666 76 45666
Q ss_pred EEec
Q 018903 78 CYTR 81 (349)
Q Consensus 78 a~~~ 81 (349)
+++.
T Consensus 71 ~v~i 74 (187)
T smart00842 71 YVGI 74 (187)
T ss_pred EEEE
Confidence 6654
No 307
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=21.00 E-value=9e+02 Score=24.71 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=43.6
Q ss_pred CCCEEEEecCCCCCch-hHHHHHHHHHHHhhcCCCeE-eeccHHHHHHHhhhhcCCCCC---eEEEEeCCeeE--EEEEe
Q 018903 73 EIDCLCYTRGPGMGAP-LQVAAVVVRVLSQLWKKPIV-AVNHCVAHIEMGRIVTGAEDP---VVLYVSGGNTQ--VIAYS 145 (349)
Q Consensus 73 did~Ia~~~gPg~~t~-lr~g~~~ak~la~~~~~p~~-~v~hh~aHa~sa~~~s~~~~p---~~l~i~gg~~~--~~~~~ 145 (349)
.++.++++. |.+|+. -|-.+.-|- ...+.+++ .|+.-.|-|.+....... .+ +++++.||.+. ++...
T Consensus 134 ~~~~~vitV-Pa~~~~~qr~~~~~Aa---~~agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dvs~~~~~ 208 (602)
T PF00012_consen 134 KVTDVVITV-PAYFTDEQRQALRDAA---ELAGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDVSVVEFS 208 (602)
T ss_dssp BEEEEEEEE--TT--HHHHHHHHHHH---HHTT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEEEEEEEE
T ss_pred ccccceeee-chhhhhhhhhcccccc---cccccccceeecccccccccccccccc-cccceeccccccceEeeeehhcc
Confidence 477788885 888875 222332222 23344433 456666644432122211 22 45566666653 44456
Q ss_pred CCcEEEEeecccchh-hHHHHH
Q 018903 146 EGRYRIFGETIDIAV-GNCLDR 166 (349)
Q Consensus 146 ~g~~~~~~~~~~~S~-Gr~~Da 166 (349)
++.++++....+..+ |+.||.
T Consensus 209 ~~~~~v~~~~~~~~lGG~~~D~ 230 (602)
T PF00012_consen 209 NGQFEVLATAGDNNLGGRDFDE 230 (602)
T ss_dssp TTEEEEEEEEEETTCSHHHHHH
T ss_pred cccccccccccccccccceecc
Confidence 788877765444444 666663
No 308
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=20.99 E-value=4.1e+02 Score=23.85 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=47.4
Q ss_pred EEEEEecCCc-----ceeEEEEE-cCCeEEEeeeee-ccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEE
Q 018903 5 IALGFEGSAN-----KIGVGVVT-LDGSILSNPRHT-YFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCL 77 (349)
Q Consensus 5 ~iLgIdts~~-----~~sval~~-~dg~i~~~~~~~-~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~I 77 (349)
+|.|+|.++. .+++.+++ .|++++...... .+.-+| .|-.- -+..++.+++ +++... .+.|.|
T Consensus 30 ~vagvDvsy~~~~~~~aa~Vv~~~~~~~vie~~v~~~~~~~PY---IPGfL---aFRE~p~~l~-a~~~l~---~~~d~i 99 (212)
T COG1515 30 TVAGVDVSYEDGERGRAAAVVLDYPDLEVIETAVVRGPVSFPY---IPGFL---AFRELPLLLK-ALEKLS---VKPDLL 99 (212)
T ss_pred eEEEEEEEecCCCeEEEEEEEEEcCCCceEEEEEEecccccCc---ccchh---hhhhhHHHHH-HHHhcC---CCCCEE
Confidence 5789998876 22333333 367777654222 222222 12221 1222333333 333322 378999
Q ss_pred EEecCCCCCchhHHHHHHHHHHHhhcCCCeEeeccH
Q 018903 78 CYTRGPGMGAPLQVAAVVVRVLSQLWKKPIVAVNHC 113 (349)
Q Consensus 78 a~~~gPg~~t~lr~g~~~ak~la~~~~~p~~~v~hh 113 (349)
.|+.+ |..=.-|.| +|-.++..+++|.++|--+
T Consensus 100 lVDG~-GiaHPR~~G--lAsH~Gv~l~~PtIGVAK~ 132 (212)
T COG1515 100 LVDGH-GIAHPRRLG--LASHIGVLLDVPTIGVAKS 132 (212)
T ss_pred EEcCc-ceecCcccC--hhheeeeeeCCCceeEehh
Confidence 98853 322112222 2334556678999988644
No 309
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=20.96 E-value=1.4e+02 Score=24.01 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=27.5
Q ss_pred CCeEEEEccchhcHHHHHHHHHHHHhcCCEEEEcC
Q 018903 257 KKDVLIVGGVGCNERLQEMMRTMCSERGGRLFATD 291 (349)
Q Consensus 257 ~~~v~lsGGVa~N~~l~~~l~~~l~~~g~~v~~~~ 291 (349)
.+.+++.|+-+.+....+.+.+..+..+..++..+
T Consensus 12 ~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~ 46 (137)
T PF00205_consen 12 KRPVILAGRGARRSGAAEELRELAEKLGIPVATTP 46 (137)
T ss_dssp SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEG
T ss_pred CCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecC
Confidence 56899999988877888888888888899987754
No 310
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=20.64 E-value=1.2e+02 Score=31.88 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCCeEEEEccchhcHHHHHHH-------------HHHHHhcCCEEEEcCCCCCChHHHHHHHHHHHHHHcCCC-CCCccc
Q 018903 256 DKKDVLIVGGVGCNERLQEMM-------------RTMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGSS-TPLEES 321 (349)
Q Consensus 256 ~~~~v~lsGGVa~N~~l~~~l-------------~~~l~~~g~~v~~~~~~~~~D~G~~iG~a~~~~~~~~~~-~~~~~~ 321 (349)
+-+.|+|+.||+.-...+.-+ ++-++..|++-+.+- -.|+||+-++..+....-..|.. .+|.-+
T Consensus 454 k~DiLVLttGC~a~~~~k~Gl~~~ea~~~aG~gLk~vc~~lgiPpVL~~-GsCvDn~r~~~~a~aLA~~lgvdi~~LPl~ 532 (613)
T cd01915 454 KRNVLVLATGCGAGALAKAGLMDPEAAELAGDGLKAVCKALGIPPVLHM-GSCVDNSRIVDLATALANELGVDIPDLPLV 532 (613)
T ss_pred cCCEEEEecchhhhhhhhcCCCChHHHhhccchhhhhcccCCCCCcccc-ccchhHHHHHHHHHHHHHHhCCCcccCCce
Confidence 456799999987755544333 112222344322322 35999988877665554455665 556655
Q ss_pred ccccCccCc
Q 018903 322 TFTQRFRTD 330 (349)
Q Consensus 322 ~~~~~~~~~ 330 (349)
..-|+|-.|
T Consensus 533 ~~Apew~ee 541 (613)
T cd01915 533 ASAPEWMEE 541 (613)
T ss_pred eechhhHhH
Confidence 555777655
No 311
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=20.58 E-value=2.2e+02 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
+.+...++.+|+++|++++|||.|...
T Consensus 234 ~gl~~ai~~AL~~agl~~~dId~v~ah 260 (348)
T PRK06147 234 DGLTQAIRAALAEAGCGLEDMDYRIAD 260 (348)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEcC
Confidence 457789999999999999999999754
No 312
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=20.44 E-value=1.8e+02 Score=27.12 Aligned_cols=27 Identities=37% Similarity=0.371 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEe
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYT 80 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~ 80 (349)
..+...++.+|+++|++++|||.|...
T Consensus 205 ~~~~~~i~~al~~agl~~~did~~~~h 231 (332)
T cd00825 205 EGLARAAKEALAVAGLTVWDIDYLVAH 231 (332)
T ss_pred HHHHHHHHHHHHHcCCCHhHCCEEEcc
Confidence 445678999999999999999999865
No 313
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=20.22 E-value=2.2e+02 Score=27.90 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=22.1
Q ss_pred HHHHHHHHHH-cCCCCCCCCEEEEecCC
Q 018903 57 LPLVKSALKT-AGITPDEIDCLCYTRGP 83 (349)
Q Consensus 57 ~~~i~~~L~~-~~i~~~did~Ia~~~gP 83 (349)
..+++.+|++ +|+++++||.|++..-+
T Consensus 32 ~~~~~~al~~~agl~~~~Id~vi~g~~~ 59 (387)
T PRK08947 32 AHLMRSLLARNPALDPAEIDDIIWGCVQ 59 (387)
T ss_pred HHHHHHHHHhccCcChHHhCeEEEEecc
Confidence 3578999996 69999999999987544
No 314
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=20.17 E-value=4.3e+02 Score=27.14 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.4
Q ss_pred cEEEEEecCCcceeEEEEE-cCCeEEEeee
Q 018903 4 MIALGFEGSANKIGVGVVT-LDGSILSNPR 32 (349)
Q Consensus 4 m~iLgIdts~~~~sval~~-~dg~i~~~~~ 32 (349)
-.++|||-++.++-++|++ .+|+++....
T Consensus 6 ~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~ 35 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFNAKNGELLSLAQ 35 (516)
T ss_pred ceEEEEEcCCCceEEEEEecCCCccceeee
Confidence 3689999999999999998 6789887653
No 315
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=20.13 E-value=1.8e+02 Score=29.08 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEec
Q 018903 56 VLPLVKSALKTAGITPDEIDCLCYTR 81 (349)
Q Consensus 56 l~~~i~~~L~~~~i~~~did~Ia~~~ 81 (349)
...+++.+|+++++++++||.|++..
T Consensus 35 ~~~a~~~al~~agl~~~~Id~vi~G~ 60 (430)
T TIGR02446 35 GKMVVSELLARSEIDPKLIEQLVFGQ 60 (430)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 34689999999999999999998864
No 316
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=20.09 E-value=3.4e+02 Score=23.82 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=38.5
Q ss_pred EEEEecCCcceeEEEEEcCCeEEE-eeeeeccCCCCCCCcchhhhhhHHhhHHHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 6 ALGFEGSANKIGVGVVTLDGSILS-NPRHTYFTPPGQGFLPRETAQHHLEHVLPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 6 iLgIdts~~~~sval~~~dg~i~~-~~~~~~~~~~~~g~~p~~~~~~h~~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
+|.||.++.....++++ +++++. ..+.... .........+...+...+++.+.+ ..+.++..|.
T Consensus 1 ~L~iDiGNT~ik~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~----~v~isSV~~~ 65 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFD-GDKLIDPSGRISHS----------TALDSSSDELLELLESLLPQPKID----AVIISSVVPE 65 (206)
T ss_dssp EEEEEE-SSEEEEEEEE-TTEEEE-EEEE-EE----------ECTTSSHHHHHHHHHHHHHCTTCG----EEEEEESSGH
T ss_pred CEEEEECCCeEEEEEEE-CCEEEeeeeEEEec----------ccccccHHHHHHHHHHHhccccCC----cEEEEEcCCH
Confidence 58999999999999999 677766 3332100 001112344556677777765532 5667777764
No 317
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=20.08 E-value=4e+02 Score=23.27 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEccchh
Q 018903 237 QETLFAMLVEITERAMAHCDKKDVLIVGGVGC 268 (349)
Q Consensus 237 q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~ 268 (349)
++.+.+.+++++ ++.+++.|+.-||...
T Consensus 32 ~~e~a~~vld~a----~~~gv~~iitLgG~~~ 59 (188)
T TIGR00162 32 QYELVNAIIDVA----KKYGARMIYTLGGYGV 59 (188)
T ss_pred HHHHHHHHHHHH----HHcCCCEEEEecCCcC
Confidence 444566666655 6678999888888544
No 318
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=20.07 E-value=1.3e+02 Score=29.08 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
.....+++.+|+++|++++|||.|-+- |+|
T Consensus 206 ~~~~~ai~~AL~~Agl~p~dIdyIeaH-gtg 235 (342)
T PRK14691 206 DGAYRAMKIALRQAGITPEQVQHLNAH-ATS 235 (342)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEec-CCC
Confidence 344568999999999999999998654 444
No 319
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=20.00 E-value=2.1e+02 Score=28.05 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCEEEEecCCC
Q 018903 54 EHVLPLVKSALKTAGITPDEIDCLCYTRGPG 84 (349)
Q Consensus 54 ~~l~~~i~~~L~~~~i~~~did~Ia~~~gPg 84 (349)
..+..+++.+|+++|++++|||+|... |.|
T Consensus 270 ~~~~~a~~~al~~ag~~~~~i~~v~~h-gtg 299 (399)
T cd00832 270 PGLARAIRLALADAGLTPEDVDVVFAD-AAG 299 (399)
T ss_pred HHHHHHHHHHHHHcCCCHHHccEEEec-cCc
Confidence 345678999999999999999998644 444
Done!