BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018904
         (349 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XOZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
           With Tadalafil
 pdb|1XP0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
           With Vardenafil
          Length = 364

 Score = 31.2 bits (69), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 17/101 (16%)

Query: 70  RAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLY 129
           +AGK +  +T    L      AL +AAL+   +H GV++   ++T  +        A++Y
Sbjct: 118 KAGKIQNKLTDLEIL------ALLIAALSHDLDHPGVSNQFLINTNSE-------LALMY 164

Query: 130 LVKNLLQYYIFAY----VDAPGYQILKNLNIISTGVLYRII 166
             +++L+++ F      +++PG QIL  L+I       +II
Sbjct: 165 NDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKII 205


>pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
           With Gmp
 pdb|1T9S|B Chain B, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
           With Gmp
 pdb|1TBF|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
           With Sildenafil
          Length = 347

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 17/101 (16%)

Query: 70  RAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLY 129
           +AGK +  +T    L      AL +AAL+   +H GV++   ++T  +        A++Y
Sbjct: 118 KAGKIQNKLTDLEIL------ALLIAALSHDLDHPGVSNQFLINTNSE-------LALMY 164

Query: 130 LVKNLLQYYIFAY----VDAPGYQILKNLNIISTGVLYRII 166
             +++L+++ F      +++PG QIL  L+I       +II
Sbjct: 165 NDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKII 205


>pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5
           Inhibitors: Evaluation Of Modifications To The Central
           Ring System.
 pdb|3HDZ|A Chain A, Identification, Synthesis, And Sar Of Amino Substituted
           Pyrido[3,2b]pryaziones As Potent And Selective Pde5
           Inhibitors
          Length = 324

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 17/101 (16%)

Query: 70  RAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLY 129
           +AGK +  +T    L      AL +AAL+   +H GV++   ++T  +        A++Y
Sbjct: 95  KAGKIQNKLTDLEIL------ALLIAALSHDLDHPGVSNQFLINTNSE-------LALMY 141

Query: 130 LVKNLLQYYIFAY----VDAPGYQILKNLNIISTGVLYRII 166
             +++L+++ F      +++PG QIL  L+I       +II
Sbjct: 142 NDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKII 182


>pdb|2CHM|A Chain A, Crystal Structure Of N2 Substituted Pyrazolo
           Pyrimidinones- A Flipped Binding Mode In Pde5
 pdb|3TGE|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor1
 pdb|3TGG|A Chain A, A Novel Series Of Potent And Selective Pde5 Inhibitor2
          Length = 326

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 17/101 (16%)

Query: 70  RAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLY 129
           +AGK +  +T    L      AL +AAL+   +H GV++   ++T  +        A++Y
Sbjct: 97  KAGKIQNKLTDLEIL------ALLIAALSHDLDHPGVSNQFLINTNSE-------LALMY 143

Query: 130 LVKNLLQYYIFAY----VDAPGYQILKNLNIISTGVLYRII 166
             +++L+++ F      +++PG QIL  L+I       +II
Sbjct: 144 NDESVLEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKII 184


>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
           Alpha-Actinin-4 Mutant(K255e)
 pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
           Alpha-Actinin-4 Mutant(K255e)
          Length = 237

 Score = 28.1 bits (61), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 207 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWL-YVFGMAFNAV 252
           I  I +   S   G+      K  P +N+NVQNF + +  G+AFNA+
Sbjct: 116 IQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNAL 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,283,607
Number of Sequences: 62578
Number of extensions: 285520
Number of successful extensions: 696
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 5
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)