Query 018904
Match_columns 349
No_of_seqs 243 out of 1512
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 6.5E-48 1.4E-52 354.0 33.2 301 46-347 15-325 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 1.4E-38 3E-43 288.3 23.5 221 114-335 12-244 (244)
3 PLN00411 nodulin MtN21 family 100.0 6E-26 1.3E-30 216.8 31.7 287 46-346 13-330 (358)
4 PRK15430 putative chlorampheni 99.9 1.4E-24 3E-29 203.4 30.0 275 45-342 7-283 (296)
5 PRK11453 O-acetylserine/cystei 99.9 5.9E-24 1.3E-28 199.4 34.1 276 48-345 6-288 (299)
6 PF06027 DUF914: Eukaryotic pr 99.9 3E-24 6.4E-29 201.5 30.6 279 54-346 21-307 (334)
7 PRK11272 putative DMT superfam 99.9 6.1E-24 1.3E-28 198.7 31.0 271 48-346 10-287 (292)
8 PTZ00343 triose or hexose phos 99.9 2.6E-23 5.6E-28 198.9 35.3 271 62-346 65-350 (350)
9 PRK11689 aromatic amino acid e 99.9 8.6E-24 1.9E-28 197.9 29.2 270 46-344 4-287 (295)
10 TIGR00817 tpt Tpt phosphate/ph 99.9 1.8E-23 3.8E-28 196.4 26.8 273 58-346 14-295 (302)
11 TIGR00950 2A78 Carboxylate/Ami 99.9 8.5E-23 1.8E-27 187.3 28.8 254 58-339 1-259 (260)
12 PRK10532 threonine and homoser 99.9 2.8E-22 6.1E-27 187.5 31.1 269 43-345 9-282 (293)
13 PF08449 UAA: UAA transporter 99.9 1E-20 2.2E-25 177.8 32.0 260 77-348 31-301 (303)
14 TIGR00803 nst UDP-galactose tr 99.9 1.9E-22 4.1E-27 181.2 17.5 219 122-342 2-222 (222)
15 KOG3912 Predicted integral mem 99.9 1.7E-20 3.7E-25 166.6 23.9 289 50-344 7-334 (372)
16 TIGR00688 rarD rarD protein. T 99.9 2.4E-20 5.3E-25 171.0 25.8 250 46-319 2-255 (256)
17 TIGR03340 phn_DUF6 phosphonate 99.9 3.3E-20 7.2E-25 172.5 24.1 270 49-341 4-280 (281)
18 COG0697 RhaT Permeases of the 99.9 1.4E-18 3E-23 160.9 32.7 283 46-347 7-290 (292)
19 KOG4510 Permease of the drug/m 99.7 1.5E-17 3.2E-22 147.1 6.4 269 50-342 42-323 (346)
20 KOG1581 UDP-galactose transpor 99.7 3.1E-14 6.8E-19 128.6 26.4 256 77-343 50-312 (327)
21 KOG1580 UDP-galactose transpor 99.7 1.8E-15 3.8E-20 131.7 15.1 221 120-342 86-311 (337)
22 TIGR00776 RhaT RhaT L-rhamnose 99.7 2.3E-13 5E-18 127.1 28.4 267 48-344 3-288 (290)
23 COG2962 RarD Predicted permeas 99.6 9.1E-13 2E-17 119.0 26.9 274 45-345 6-284 (293)
24 KOG1441 Glucose-6-phosphate/ph 99.5 5.5E-14 1.2E-18 130.8 11.5 220 120-346 84-309 (316)
25 KOG1443 Predicted integral mem 99.5 2.7E-12 5.9E-17 116.1 20.4 285 50-344 16-315 (349)
26 KOG2766 Predicted membrane pro 99.5 9.9E-15 2.1E-19 128.5 1.1 247 78-345 48-300 (336)
27 KOG1444 Nucleotide-sugar trans 99.5 2.6E-11 5.7E-16 111.0 23.1 282 48-345 14-301 (314)
28 KOG2765 Predicted membrane pro 99.4 8.5E-12 1.8E-16 115.8 16.7 219 124-345 164-391 (416)
29 COG5006 rhtA Threonine/homoser 99.4 1.2E-09 2.5E-14 96.8 26.0 256 51-340 18-278 (292)
30 KOG1582 UDP-galactose transpor 99.4 1.6E-10 3.5E-15 103.0 20.1 293 39-345 36-333 (367)
31 KOG1583 UDP-N-acetylglucosamin 99.3 1.5E-12 3.3E-17 116.1 6.0 215 122-344 67-314 (330)
32 PF00892 EamA: EamA-like trans 99.2 3.3E-10 7.1E-15 91.4 10.9 123 57-190 2-125 (126)
33 KOG1442 GDP-fucose transporter 99.1 5E-11 1.1E-15 106.4 4.4 259 78-345 61-328 (347)
34 COG2510 Predicted membrane pro 99.1 1.7E-09 3.6E-14 86.1 11.9 134 49-191 6-139 (140)
35 PF13536 EmrE: Multidrug resis 99.1 1.1E-09 2.4E-14 87.8 10.0 71 122-193 37-108 (113)
36 PF03151 TPT: Triose-phosphate 99.0 2.2E-08 4.7E-13 84.2 15.9 140 205-344 1-153 (153)
37 TIGR00950 2A78 Carboxylate/Ami 98.8 2.3E-07 5E-12 84.8 16.9 133 45-187 127-260 (260)
38 COG5070 VRG4 Nucleotide-sugar 98.8 1.8E-07 3.9E-12 81.5 14.0 222 121-344 70-296 (309)
39 PF06800 Sugar_transport: Suga 98.8 2.9E-06 6.2E-11 77.5 22.2 214 117-341 43-268 (269)
40 KOG4314 Predicted carbohydrate 98.8 1.6E-07 3.5E-12 80.3 12.7 203 127-344 61-276 (290)
41 PF03151 TPT: Triose-phosphate 98.7 4.8E-07 1E-11 76.0 14.2 140 48-189 2-151 (153)
42 PF00892 EamA: EamA-like trans 98.6 3.4E-07 7.4E-12 73.5 10.7 125 214-343 1-125 (126)
43 PRK15051 4-amino-4-deoxy-L-ara 98.6 3.5E-07 7.5E-12 73.0 9.6 69 122-190 40-108 (111)
44 COG2510 Predicted membrane pro 98.6 7.3E-07 1.6E-11 71.2 10.8 128 206-343 5-138 (140)
45 PLN00411 nodulin MtN21 family 98.5 5.8E-06 1.3E-10 79.4 16.4 142 43-192 186-329 (358)
46 PF05653 Mg_trans_NIPA: Magnes 98.5 1.1E-05 2.4E-10 75.6 17.5 72 118-191 51-122 (300)
47 PRK10532 threonine and homoser 98.5 5.6E-06 1.2E-10 77.5 15.6 134 46-192 148-282 (293)
48 TIGR00817 tpt Tpt phosphate/ph 98.4 1.4E-06 3.1E-11 81.8 10.9 142 46-192 145-294 (302)
49 PTZ00343 triose or hexose phos 98.4 7.9E-06 1.7E-10 78.4 16.1 143 46-190 194-347 (350)
50 PRK11689 aromatic amino acid e 98.4 6.6E-06 1.4E-10 77.1 15.3 133 46-192 156-288 (295)
51 PRK11272 putative DMT superfam 98.4 9.5E-06 2.1E-10 75.8 15.0 136 46-192 150-286 (292)
52 PRK13499 rhamnose-proton sympo 98.4 0.00051 1.1E-08 65.3 26.3 170 44-221 5-191 (345)
53 TIGR03340 phn_DUF6 phosphonate 98.3 3.5E-06 7.6E-11 78.3 10.9 63 126-188 218-280 (281)
54 PRK02971 4-amino-4-deoxy-L-ara 98.3 4.7E-05 1E-09 62.3 14.9 121 204-346 2-124 (129)
55 PRK11453 O-acetylserine/cystei 98.2 0.0001 2.2E-09 69.1 16.9 144 46-192 143-288 (299)
56 PF08449 UAA: UAA transporter 98.1 6.9E-05 1.5E-09 70.5 14.1 145 46-192 154-298 (303)
57 TIGR00776 RhaT RhaT L-rhamnose 98.1 5.3E-05 1.2E-09 70.8 12.8 135 43-191 149-288 (290)
58 PRK02971 4-amino-4-deoxy-L-ara 98.0 4.2E-05 9.1E-10 62.6 9.8 67 127-193 56-124 (129)
59 PRK15430 putative chlorampheni 98.0 0.00027 5.8E-09 66.2 16.5 137 201-343 5-144 (296)
60 TIGR00688 rarD rarD protein. T 97.9 0.00066 1.4E-08 62.1 16.2 135 204-342 2-140 (256)
61 PRK10452 multidrug efflux syst 97.8 0.00017 3.6E-09 58.1 9.7 70 123-192 34-104 (120)
62 PRK10650 multidrug efflux syst 97.8 0.0002 4.4E-09 56.6 9.3 69 122-190 38-107 (109)
63 PRK11431 multidrug efflux syst 97.8 0.00024 5.3E-09 55.8 9.7 69 123-191 33-102 (105)
64 COG2076 EmrE Membrane transpor 97.8 0.00022 4.7E-09 55.7 9.2 70 122-191 33-103 (106)
65 COG0697 RhaT Permeases of the 97.7 0.0018 3.8E-08 59.5 16.2 133 46-192 154-288 (292)
66 PRK09541 emrE multidrug efflux 97.7 0.0003 6.5E-09 55.8 9.3 69 124-192 35-104 (110)
67 PRK15051 4-amino-4-deoxy-L-ara 97.7 0.0011 2.3E-08 52.8 12.2 61 283-343 48-108 (111)
68 PF06800 Sugar_transport: Suga 97.6 0.0012 2.5E-08 60.5 13.1 124 41-180 133-256 (269)
69 PF13536 EmrE: Multidrug resis 97.6 0.0025 5.5E-08 50.7 12.6 62 284-346 47-108 (113)
70 KOG2922 Uncharacterized conser 97.5 0.00038 8.3E-09 64.4 8.4 66 127-192 72-137 (335)
71 KOG1441 Glucose-6-phosphate/ph 97.4 0.00038 8.2E-09 65.4 6.8 142 46-190 163-306 (316)
72 PRK10452 multidrug efflux syst 97.4 0.0023 4.9E-08 51.5 10.2 63 283-345 41-104 (120)
73 COG5006 rhtA Threonine/homoser 97.3 0.006 1.3E-07 54.8 13.0 128 50-189 152-280 (292)
74 PF00893 Multi_Drug_Res: Small 97.3 0.0011 2.3E-08 51.1 7.2 55 127-181 37-92 (93)
75 PRK09541 emrE multidrug efflux 97.2 0.0048 1E-07 48.9 10.1 58 287-345 45-104 (110)
76 PF05653 Mg_trans_NIPA: Magnes 97.1 0.0046 1E-07 58.0 11.0 117 201-342 4-120 (300)
77 PF06027 DUF914: Eukaryotic pr 97.0 0.022 4.8E-07 54.1 14.7 141 45-193 167-307 (334)
78 COG2076 EmrE Membrane transpor 97.0 0.0083 1.8E-07 46.9 9.4 65 281-345 39-104 (106)
79 PRK11431 multidrug efflux syst 97.0 0.011 2.4E-07 46.5 9.9 63 283-345 40-103 (105)
80 PF10639 UPF0546: Uncharacteri 96.8 0.0037 7.9E-08 49.7 6.3 69 121-189 43-112 (113)
81 PRK10650 multidrug efflux syst 96.8 0.018 3.9E-07 45.6 9.9 61 283-343 46-107 (109)
82 KOG1581 UDP-galactose transpor 96.4 0.029 6.3E-07 51.7 10.1 138 43-188 169-310 (327)
83 COG4975 GlcU Putative glucose 96.4 0.00045 9.8E-09 61.5 -1.8 263 48-341 4-282 (288)
84 TIGR00803 nst UDP-galactose tr 96.3 0.069 1.5E-06 47.6 11.8 66 123-188 156-221 (222)
85 COG2962 RarD Predicted permeas 96.2 0.27 5.8E-06 45.3 14.8 130 53-192 155-284 (293)
86 PF04657 DUF606: Protein of un 96.0 0.65 1.4E-05 38.4 15.5 131 206-341 3-138 (138)
87 PRK13499 rhamnose-proton sympo 95.6 0.5 1.1E-05 45.1 15.0 76 116-192 257-342 (345)
88 PF10639 UPF0546: Uncharacteri 95.3 0.053 1.1E-06 43.1 6.0 108 211-341 3-111 (113)
89 PF00893 Multi_Drug_Res: Small 95.3 0.098 2.1E-06 40.1 7.4 51 285-335 42-93 (93)
90 KOG4510 Permease of the drug/m 94.8 0.063 1.4E-06 48.8 5.7 131 48-189 193-323 (346)
91 PF04657 DUF606: Protein of un 94.7 1.9 4.2E-05 35.5 13.9 104 78-188 30-138 (138)
92 PF04142 Nuc_sug_transp: Nucle 94.2 0.33 7.1E-06 44.2 9.2 64 283-346 28-91 (244)
93 KOG2765 Predicted membrane pro 93.9 1.6 3.6E-05 41.7 13.2 151 39-193 240-392 (416)
94 COG4975 GlcU Putative glucose 93.2 0.0086 1.9E-07 53.6 -2.9 125 41-181 147-271 (288)
95 KOG1580 UDP-galactose transpor 93.1 0.17 3.6E-06 45.2 4.9 65 125-189 247-311 (337)
96 COG5070 VRG4 Nucleotide-sugar 92.3 0.66 1.4E-05 41.2 7.5 112 75-190 182-295 (309)
97 KOG1444 Nucleotide-sugar trans 90.9 1.2 2.6E-05 41.6 8.2 141 46-191 157-300 (314)
98 PF06379 RhaT: L-rhamnose-prot 90.7 5.7 0.00012 37.7 12.4 133 201-344 4-153 (344)
99 KOG2922 Uncharacterized conser 90.1 0.21 4.5E-06 46.7 2.4 117 201-342 18-134 (335)
100 COG3238 Uncharacterized protei 89.8 11 0.00023 31.6 14.9 138 203-347 4-149 (150)
101 COG3238 Uncharacterized protei 86.9 17 0.00037 30.4 12.3 68 124-191 74-146 (150)
102 PF04342 DUF486: Protein of un 86.5 1.5 3.3E-05 34.1 4.7 42 301-342 65-106 (108)
103 COG3169 Uncharacterized protei 84.4 17 0.00036 28.0 11.6 43 301-343 72-114 (116)
104 KOG1583 UDP-N-acetylglucosamin 82.5 10 0.00022 35.0 8.8 141 42-190 160-313 (330)
105 PF07857 DUF1632: CEO family ( 80.3 8.9 0.00019 35.1 7.9 127 205-344 1-134 (254)
106 KOG4831 Unnamed protein [Funct 79.8 19 0.00041 28.2 8.2 69 121-189 54-123 (125)
107 PF04342 DUF486: Protein of un 73.2 8.7 0.00019 30.0 4.8 49 141-189 57-106 (108)
108 KOG3912 Predicted integral mem 70.8 14 0.0003 34.2 6.4 59 285-343 99-157 (372)
109 KOG1443 Predicted integral mem 69.5 11 0.00025 35.2 5.7 75 116-190 240-314 (349)
110 PRK02237 hypothetical protein; 67.3 42 0.00091 26.4 7.5 46 299-344 58-105 (109)
111 KOG4831 Unnamed protein [Funct 62.5 11 0.00024 29.4 3.5 40 303-342 84-123 (125)
112 PF02694 UPF0060: Uncharacteri 57.1 19 0.0004 28.2 3.9 49 297-345 54-104 (107)
113 PF05297 Herpes_LMP1: Herpesvi 55.8 3.8 8.2E-05 37.7 0.0 94 138-236 42-137 (381)
114 PF06570 DUF1129: Protein of u 54.8 1.5E+02 0.0032 26.0 10.7 15 158-172 188-202 (206)
115 KOG1442 GDP-fucose transporter 51.3 8.9 0.00019 35.4 1.6 136 46-186 185-322 (347)
116 COG3169 Uncharacterized protei 50.7 1.2E+02 0.0025 23.5 7.2 30 160-189 84-113 (116)
117 PRK02237 hypothetical protein; 47.2 60 0.0013 25.5 5.4 47 147-193 61-107 (109)
118 KOG1582 UDP-galactose transpor 45.4 1.4E+02 0.0031 27.7 8.2 115 77-193 219-334 (367)
119 PF02694 UPF0060: Uncharacteri 41.8 70 0.0015 25.1 5.0 47 147-193 59-105 (107)
120 TIGR02865 spore_II_E stage II 40.1 5E+02 0.011 27.9 15.2 44 146-189 11-54 (764)
121 PF06379 RhaT: L-rhamnose-prot 37.9 3.7E+02 0.0081 25.7 25.1 108 117-224 71-193 (344)
122 PF05915 DUF872: Eukaryotic pr 37.1 2E+02 0.0044 22.9 7.1 11 3-13 1-11 (115)
123 PF06123 CreD: Inner membrane 35.9 4.5E+02 0.0097 26.1 11.0 77 148-231 300-378 (430)
124 PF05297 Herpes_LMP1: Herpesvi 28.2 19 0.00042 33.2 0.0 30 39-69 20-49 (381)
125 PF07857 DUF1632: CEO family ( 27.6 4.8E+02 0.01 23.9 11.8 122 48-190 2-133 (254)
126 KOG4314 Predicted carbohydrate 25.9 1E+02 0.0022 27.2 3.9 51 293-343 74-124 (290)
127 PF09656 PGPGW: Putative trans 25.4 2.2E+02 0.0048 19.3 5.2 46 174-229 4-49 (53)
128 PRK11901 hypothetical protein; 25.2 1.1E+02 0.0023 29.0 4.3 12 19-30 15-26 (327)
129 PF07123 PsbW: Photosystem II 24.4 65 0.0014 26.4 2.3 31 200-230 102-132 (138)
130 TIGR01167 LPXTG_anchor LPXTG-m 24.2 1.2E+02 0.0026 17.8 3.1 24 323-346 9-32 (34)
131 PRK11715 inner membrane protei 23.9 7.3E+02 0.016 24.7 10.9 59 166-231 324-384 (436)
132 PRK15087 hemolysin; Provisiona 23.4 5.2E+02 0.011 22.9 14.0 17 329-345 172-188 (219)
133 COG1742 Uncharacterized conser 22.3 3.9E+02 0.0084 20.9 6.5 74 276-349 34-109 (109)
134 PRK10447 HflBKC-binding inner 22.2 5.6E+02 0.012 22.8 17.7 35 145-180 104-138 (219)
135 TIGR02230 ATPase_gene1 F0F1-AT 21.4 1.2E+02 0.0026 23.5 3.3 35 155-189 54-88 (100)
136 COG2149 Predicted membrane pro 20.8 4.4E+02 0.0096 21.1 7.6 48 174-221 29-76 (120)
137 KOG2234 Predicted UDP-galactos 20.5 7.7E+02 0.017 23.7 16.2 67 127-193 258-324 (345)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-48 Score=353.98 Aligned_cols=301 Identities=37% Similarity=0.596 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC-CC-CCccccccchhhh
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNH--EGV-TD-DNRLSTTLDEVIV 121 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~--~~~-~~-~~~~~~~~~~l~~ 121 (349)
.+++.++.+++++++.....|+++..++++|.|++++++.|++|+++|..+.+++.++ ++. +. ......+|++.++
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 7899999999999999999999998778899999999999999999999998543211 110 00 1112255678999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc---CCC---
Q 018904 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN---SNS--- 195 (349)
Q Consensus 122 ~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~---~~~--- 195 (349)
..+|+++|+++|+++|+++.++|++++|+..|++++.||+++.++|+||++++||.++++.++|+.++|.+ +.+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~ 174 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS 174 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999943 211
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHH
Q 018904 196 DRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT 275 (349)
Q Consensus 196 ~~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (349)
+...+++..|...++.+|++++++++|.||++|+.+. +.|+||.+++++|++++++.....|++++.+.|+|+||+..+
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~-s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v 253 (345)
T KOG2234|consen 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNV-SLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV 253 (345)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence 1223578899999999999999999999999999775 999999999999999999998888888777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCCC
Q 018904 276 VLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 347 (349)
Q Consensus 276 ~l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~~ 347 (349)
|+.++.++++|++++.++||+|++.|.++++++++++.+.|+.+||.++|..+++|+.+|+.++++|+..|.
T Consensus 254 w~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 254 WLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred HHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997664
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=1.4e-38 Score=288.33 Aligned_cols=221 Identities=41% Similarity=0.739 Sum_probs=205.2
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (349)
Q Consensus 114 ~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~ 193 (349)
.++|+.+++++||++|+++|++.|++++++|++++|++.|+++++||++++++||||++++||.++++.++|+++++.++
T Consensus 12 ~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 12 KSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCC------c------ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhh
Q 018904 194 NSD------R------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDA 261 (349)
Q Consensus 194 ~~~------~------~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 261 (349)
... . ...+...|+++++++++++|+++||.||++|+.+. ++|.||.|++.+|++++++.....|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~-s~~~~N~qL~~~gi~~~~~~~~~~~~~~ 170 (244)
T PF04142_consen 92 SQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV-SLWIQNMQLYLFGILFNLLALLLSDGSA 170 (244)
T ss_pred ccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 221 0 02346799999999999999999999999999875 9999999999999999998877778888
Q ss_pred hhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 018904 262 VMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV 335 (349)
Q Consensus 262 ~~~~~~~~~~~~~~~l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV 335 (349)
+.+.|+|+||+.++|..++.++++|+++++++||+|++.|.+++.++++++.++++++||.++|..+++|+.+|
T Consensus 171 ~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 171 ISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999998764
No 3
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=6e-26 Score=216.81 Aligned_cols=287 Identities=14% Similarity=0.131 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 125 (349)
+.|..+++.=+..++..++.|.+-+. .++|....++|..+..++.+++.+ +++++. .+.+.+||++..+++.
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~---G~~~~~~~~~R~~iA~l~Ll~~~~--~~~~~~---~~~~~~~~~~~~l~l~ 84 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK---GLNIYPFLGYSYLLASLLLLPSLF--FTNRSR---SLPPLSVSILSKIGLL 84 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHHHHHHHH--HHHHhc---ccCcchHHHHHHHHHH
Confidence 35777888788888888898887654 356677889999999888887763 222211 1112346777778888
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHH------hcCCCchHHHHHHHHHHhhhhhccccCCCC---
Q 018904 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII------LKKKLSEIQWAAFILLCCGCTTAQLNSNSD--- 196 (349)
Q Consensus 126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~------Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~--- 196 (349)
|++...++.+.+.|++|+++++++++.++.|++++++++++ +|||++++||+|++++++|+.++..+++..
T Consensus 85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~ 164 (358)
T PLN00411 85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV 164 (358)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 88776788899999999999999999999999999999999 699999999999999999999876432110
Q ss_pred -----------------cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHH-HHHHHHHHHHHhc
Q 018904 197 -----------------RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVF-GMAFNAVAIVIQD 258 (349)
Q Consensus 197 -----------------~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 258 (349)
....+...|++++++++++||++.++.++..++.++ . ...+.+...+ +..+..+....++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~-~-~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 165 ASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA-A-FTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred ccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-H-hHHHHHHHHHHHHHHHHHHHHHcc
Confidence 001123569999999999999999999999887754 2 2223332333 3333333332221
Q ss_pred hhhhhhccccccChHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 018904 259 FDAVMNKGFFHGYSFITVLMILNHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIV 334 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~l~i~~~a~----~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~l 334 (349)
.+ .. .....++... ..+++.++ +..+..+.+++.++...+...++.|++++++|++++||++++.+++|+++
T Consensus 243 ~~-~~--~~~~~~~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~L 318 (358)
T PLN00411 243 NN-PS--VWIIHFDITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGIL 318 (358)
T ss_pred CC-cc--cceeccchHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 11 00 0111122222 22333333 33445556778899999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCC
Q 018904 335 VSVSVYLHSAGK 346 (349)
Q Consensus 335 V~~gv~l~~~~~ 346 (349)
|+.|+++.+..+
T Consensus 319 Il~Gv~l~~~~~ 330 (358)
T PLN00411 319 ITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHhhh
Confidence 999999987543
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.94 E-value=1.4e-24 Score=203.42 Aligned_cols=275 Identities=14% Similarity=0.131 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904 45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 124 (349)
Q Consensus 45 ~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i 124 (349)
.+++++.++..+.|+.+++.+|.. ++++|.++++.|.+++.++.++++. .+++. +...+..+++++......
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-----~~~~~~~~~~~R~~~a~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~ 78 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-----YYVPADEILTHRVIWSFFFMVVLMS--ICRQW-SYLKTLIQTPQKIFMLAV 78 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHH--HHccH-HHHHHHHcCHHHHHHHHH
Confidence 457788888999999999999975 2488999999999998876666552 12111 000011123455444445
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchh
Q 018904 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ 204 (349)
Q Consensus 125 ~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~ 204 (349)
.++....++.++|+|++++|+++++++.++.|+++++++++++|||++++||.|++++++|+.++..+.+ + ..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-~----~~-- 151 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-S----LP-- 151 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-C----cc--
Confidence 5666788999999999999999999999999999999999999999999999999999999998864321 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHH--HHHHH
Q 018904 205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL--MILNH 282 (349)
Q Consensus 205 G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~i~~~ 282 (349)
.+.++++++||++.++.||..++... .....+.+...++.+.... ...+..... .........+. ..+..
T Consensus 152 --~~~l~aa~~~a~~~i~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~g~~t 223 (296)
T PRK15430 152 --IIALGLAFSFAFYGLVRKKIAVEAQT-GMLIETMWLLPVAAIYLFA--IADSSTSHM---GQNPMSLNLLLIAAGIVT 223 (296)
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHHHHHHHHH--HccCCcccc---cCCcHHHHHHHHHHHHHH
Confidence 35788899999999999886432211 2222222222222222111 011100000 00111111111 11234
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904 283 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 283 a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~ 342 (349)
+++..+..+.+++.++...+...+.+|+++.++|++++||++++.+++|+++|+.|+.+.
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 456667778889999999999999999999999999999999999999999998876544
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=5.9e-24 Score=199.41 Aligned_cols=276 Identities=14% Similarity=0.139 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (349)
Q Consensus 48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l 127 (349)
.++.++..++|+++.+++|..- ++++|...+++|..+..+..+++. . +++ ..++..... |+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~----~~~~p~~~~~~R~~~a~~~l~~~~---~-~~~--------~~~~~~~~~---g~ 66 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGL----HNMPPLMLAGLRFMLVAFPAIFFV---A-RPK--------VPLNLLLGY---GL 66 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHh---c-CCC--------CchHHHHHH---HH
Confidence 3456678999999999999864 358999999999988765544433 2 111 112322222 33
Q ss_pred H-HHHHHHHHHHHHhc-CChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhH
Q 018904 128 L-YLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG 205 (349)
Q Consensus 128 l-~~~~n~l~~~al~~-~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G 205 (349)
+ ...+..+.|.+++| .|++.++++.++.|+++.+++++++|||++++||+|++++++|+.++..++.++ .+....|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--~~~~~~G 144 (299)
T PRK11453 67 TISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG--QHVAMLG 144 (299)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC--cchhHHH
Confidence 2 34566678889998 689999999999999999999999999999999999999999999886432211 1224579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHH
Q 018904 206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS 285 (349)
Q Consensus 206 ~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~ 285 (349)
++++++++++++.++++.||..++.+.......+.+....+.+.........+.+.... ..+..++...|..+++.++.
T Consensus 145 ~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~i~ 223 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTIDMTTILSLMYLAFV 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccCCHHHHHHHHHHHHH
Confidence 99999999999999999999866543211111112222222211111111112111000 01122344556666666665
Q ss_pred HHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 286 GIAVSMV-----MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 286 g~~~~~~-----~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
++.+++. +++.++.+.+....++|+++.++|++++||+++..+++|+++|+.|+++...+
T Consensus 224 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 224 ATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 5554444 45667777788889999999999999999999999999999999999886543
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.94 E-value=3e-24 Score=201.53 Aligned_cols=279 Identities=16% Similarity=0.202 Sum_probs=204.4
Q ss_pred HHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHH
Q 018904 54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKN 133 (349)
Q Consensus 54 ~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n 133 (349)
+.++.++.........+. +.+.| ..-.++.+++-.++-.+.+. +|+... +..+..+++.+.+.+.|+++...|
T Consensus 21 lsl~~~~t~~~s~~l~~~-~~~~P-~~Qs~~~Y~~l~~vy~~~~~--~r~~~~---~~~~~~~~~~w~y~lla~~Dv~aN 93 (334)
T PF06027_consen 21 LSLCITGTGTFSSLLANK-GVNIP-TFQSFFNYVLLALVYTPILL--YRRGFK---KWLKVLKRPWWKYFLLALLDVEAN 93 (334)
T ss_pred HHHHHHhHHHHHHHHHhc-CccCc-HHHHHHHHHHHHHHHhhhhh--hccccc---cchhhcchhHHHHHHHHHHHHHHH
Confidence 455555555555443333 33444 44445555554333333331 333211 111223456678999999999999
Q ss_pred HHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCC----CcccccchhHHHHH
Q 018904 134 LLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNS----DRVLQTPLQGWIMA 209 (349)
Q Consensus 134 ~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~----~~~~~~~~~G~ll~ 209 (349)
.+.+.|++|++.+.+|++.++.+++++++++++||||+++.|++|++++++|+.++...+.. +...+++..|++++
T Consensus 94 ~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~ 173 (334)
T PF06027_consen 94 YLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLA 173 (334)
T ss_pred HHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999988765321 11234688999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHH----HHHHHH
Q 018904 210 IVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI----LNHALS 285 (349)
Q Consensus 210 l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i----~~~a~~ 285 (349)
+++++++|+++|++|+..|+.+ ......+++++|.+++.+.....|+++..+. .|+...+... +...+.
T Consensus 174 l~~a~lya~~nV~~E~~v~~~~---~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~----~w~~~~~~~~v~~~~~lf~~ 246 (334)
T PF06027_consen 174 LLGAILYAVSNVLEEKLVKKAP---RVEFLGMLGLFGFIISGIQLAILERSGIESI----HWTSQVIGLLVGYALCLFLF 246 (334)
T ss_pred HHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHheehhhhhcc----CCChhhHHHHHHHHHHHHHH
Confidence 9999999999999999998864 3445567788898888876655555444321 1232222221 122334
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904 286 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 286 g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
.+.+..++++.++...+....++.+++.++++++||+++++..++|.++|+.|..+|+..+
T Consensus 247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 4566778889888888888888999999999999999999999999999999999998654
No 7
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.94 E-value=6.1e-24 Score=198.67 Aligned_cols=271 Identities=14% Similarity=0.044 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (349)
Q Consensus 48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l 127 (349)
.+.+++.++.|+++.+.+|... ++.+|.+.+++|..+..++.+++. ..+++ + .. ++|+.....+.|.
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~----~~~~p~~~~~~R~~~a~l~ll~~~---~~~~~-~-~~----~~~~~~~~~~~g~ 76 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGV----ESWPPLMMAGVRFLIAGILLLAFL---LLRGH-P-LP----TLRQWLNAALIGL 76 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHH---HHhCC-C-CC----cHHHHHHHHHHHH
Confidence 3456678999999999999875 358899999999999988777765 22221 1 11 1233334555565
Q ss_pred HH-HHHHHHHHHHH-hcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhH
Q 018904 128 LY-LVKNLLQYYIF-AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG 205 (349)
Q Consensus 128 l~-~~~n~l~~~al-~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G 205 (349)
+. ..++.+.+++. +++++++++++.++.|+++++++.+ +|||++++||.|++++++|+.++..+++. +....|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----~~~~~G 151 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----SGNPWG 151 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc----ccchHH
Confidence 53 56788899999 9999999999999999999999985 79999999999999999999988543211 234579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHH
Q 018904 206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS 285 (349)
Q Consensus 206 ~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~ 285 (349)
+++.+++++++|+++++.||..+++ +......++.. +.+...+.....+.. .....+...|..+++.++.
T Consensus 152 ~l~~l~a~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~l~i~ 221 (292)
T PRK11272 152 AILILIASASWAFGSVWSSRLPLPV---GMMAGAAEMLA-AGVVLLIASLLSGER------LTALPTLSGFLALGYLAVF 221 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHH-HHHHHHHHHHHcCCc------ccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999875432 23333333333 333222222221110 0001123344444444443
Q ss_pred -----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904 286 -----GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 286 -----g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
.....+.+|+.++...+...+.+|+++.+++++++||++|..+++|+++|+.|+++.+..+
T Consensus 222 ~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 222 GSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677788888888899999999999999999999999999999999998876543
No 8
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.94 E-value=2.6e-23 Score=198.94 Aligned_cols=271 Identities=13% Similarity=0.110 Sum_probs=187.4
Q ss_pred HHHHHHhhccCCccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 018904 62 AILIVWSKRAGKYEYS-VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIF 140 (349)
Q Consensus 62 ~i~~k~s~~~~~~~~~-~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al 140 (349)
.+..|+.-+ +++ |.++..+|.+++.+++..+. ..+. ++.++.....++.......|+++...+...+.|+
T Consensus 65 ~~~nK~vl~----~~~~P~~l~~~~~~~~~l~~~~~~---~~~~--~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl 135 (350)
T PTZ00343 65 VVDNKLALN----MLPLPWTISSLQLFVGWLFALLYW---ATGF--RKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISM 135 (350)
T ss_pred HHHHHHHHH----hCChhHHHHHHHHHHHHHHHHHHH---HhCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344465532 356 89999999999877655443 1111 1112221112244456677777776667788999
Q ss_pred hcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHHHHH
Q 018904 141 AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAG 220 (349)
Q Consensus 141 ~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~al~~ 220 (349)
++++++.++++.++.|+++++++++++|||+++++++++++.++||.+...++. +....|+++++++++++++++
T Consensus 136 ~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----~~~~~G~~~~l~s~~~~a~~~ 210 (350)
T PTZ00343 136 GLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-----HFTWLAFWCAMLSNLGSSLRS 210 (350)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-----hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864321 234679999999999999999
Q ss_pred HHHHHHhhcCCCC--chHHHHHHH--HHHHHHHHHHHHHHhchhhhhh---c--cccccChH-HHHHHHHHHHHHHHHHH
Q 018904 221 VYTEAIMKKRPSR--NINVQNFWL--YVFGMAFNAVAIVIQDFDAVMN---K--GFFHGYSF-ITVLMILNHALSGIAVS 290 (349)
Q Consensus 221 v~~e~~~k~~~~~--~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~-~~~l~i~~~a~~g~~~~ 290 (349)
++.||.+++.+.. +....+.+. ...|.++.++.....+...... . .....+.. ..+..++..++.+.+..
T Consensus 211 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n 290 (350)
T PTZ00343 211 IFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYN 290 (350)
T ss_pred HHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 9999998764310 111222222 4456666655544222211000 0 00111111 11222333344444433
Q ss_pred ----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904 291 ----MVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 291 ----~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
+.+++.++...+...++.+++++++|+++|||++|+.+++|.++++.|+++|+.-|
T Consensus 291 ~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 291 EVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 36777888999999999999999999999999999999999999999999998753
No 9
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.94 E-value=8.6e-24 Score=197.92 Aligned_cols=270 Identities=13% Similarity=0.104 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 125 (349)
+.++++++.++.|+++.+..|..- ++++|....++|..+..++.+++. ++. +.++.++.. ....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~----~~~~P~~~~~~R~~~a~l~l~~~~----~~~------~~~~~~~~~--~~~~ 67 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVS----ESLGPVGGAAMIYSVSGLLLLLTV----GFP------RLRQFPKRY--LLAG 67 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH----ccCChHHHHHHHHHHHHHHHHHHc----ccc------ccccccHHH--HHHH
Confidence 456778889999999999999875 468999999999988877665542 111 111112221 2233
Q ss_pred HHHHHHHHHHHHHHHh----cCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCc----
Q 018904 126 AVLYLVKNLLQYYIFA----YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR---- 197 (349)
Q Consensus 126 ~ll~~~~n~l~~~al~----~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~---- 197 (349)
++.+..++.+.|.+++ ++++++++++.++.|+++++++++++|||++++||.|++++++|+.++..++....
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 147 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL 147 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh
Confidence 4446678888888775 46888999999999999999999999999999999999999999998865432110
Q ss_pred --ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHH
Q 018904 198 --VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT 275 (349)
Q Consensus 198 --~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (349)
...+...|+++++.++++||+++++.||..++.+. .. ......+.. ..+.....+ +.. ...+...
T Consensus 148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~--~~---~~~~~~~~~-l~~~~~~~~-~~~------~~~~~~~ 214 (295)
T PRK11689 148 INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG--IT---LFFILTALA-LWIKYFLSP-QPA------MVFSLPA 214 (295)
T ss_pred hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc--hh---HHHHHHHHH-HHHHHHHhc-Ccc------ccCCHHH
Confidence 01123569999999999999999999998655442 21 111112222 222112211 110 1122233
Q ss_pred HHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904 276 VLMILNH----ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 344 (349)
Q Consensus 276 ~l~i~~~----a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~ 344 (349)
|..+++. +++..+..+.+|+.++...+...+..|+++.+++++++||+++..+++|+++|+.|+++...
T Consensus 215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3333332 33344556677888889899999999999999999999999999999999999999865543
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.93 E-value=1.8e-23 Score=196.42 Aligned_cols=273 Identities=13% Similarity=0.152 Sum_probs=187.0
Q ss_pred HhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 018904 58 TSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQY 137 (349)
Q Consensus 58 ~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~ 137 (349)
..+..+..|+.-++ .+ .|.+..++|...+.+.+.+.. +... .+ +.+.++|+.......|+++..++.+.+
T Consensus 14 ~~~~~~~NK~~l~~--~~-~P~~~~~~~~~~~~~~~~~~~----~~~~-~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~ 83 (302)
T TIGR00817 14 NVYFNIYNKKLLNV--FP-YPYFKTLISLAVGSLYCLLSW----SSGL-PK--RLKISSALLKLLLPVAIVHTIGHVTSN 83 (302)
T ss_pred HHHHHHHHHHHHhh--CC-hhHHHHHHHHHHHHHHHHHHH----HhCC-CC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556766432 22 368888899888766554432 1111 11 112235566667778888888999999
Q ss_pred HHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHH
Q 018904 138 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSG 217 (349)
Q Consensus 138 ~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~a 217 (349)
++++|+++++++++.++.|+++++++++++|||+++++|.|++++++|+.+...++ .+....|++++++++++++
T Consensus 84 ~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-----~~~~~~G~~~~l~a~~~~a 158 (302)
T TIGR00817 84 VSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-----LSFNWAGFLSAMISNITFV 158 (302)
T ss_pred HHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-----ccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764221 1234679999999999999
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccc---cCh-HHHHHHHHHHHHHH-----HH
Q 018904 218 FAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFH---GYS-FITVLMILNHALSG-----IA 288 (349)
Q Consensus 218 l~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~l~i~~~a~~g-----~~ 288 (349)
++.++.||..++++. +....+.+....+.++.++.....+..+........ ..+ ...+...+..+++. ..
T Consensus 159 ~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (302)
T TIGR00817 159 SRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQV 237 (302)
T ss_pred HHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999998873221 222333444455555555544332211110000000 001 11222122222211 12
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904 289 VSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 289 ~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
..+.+++.++.+.+......|++++++|++++||++|..+++|+++++.|+++|++.|
T Consensus 238 ~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 238 AFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 2246788899999999999999999999999999999999999999999999998654
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.92 E-value=8.5e-23 Score=187.29 Aligned_cols=254 Identities=13% Similarity=0.089 Sum_probs=185.2
Q ss_pred HhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 018904 58 TSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQY 137 (349)
Q Consensus 58 ~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~ 137 (349)
|+.+.+..|+.-+ ...|+.++.+.|.+...++..+.. +++ . .+++|+. .....++...+++.+.+
T Consensus 1 Wg~~~~~~k~~~~---~~~~~~~~~~~r~~~~~l~l~~~~---~~~-~------~~~~~~~--~~~~~~~~~~l~~~~~~ 65 (260)
T TIGR00950 1 WGTTGVVIGQYLE---GQVPLYFAVFRRLIFALLLLLPLL---RRR-P------PLKRLLR--LLLLGALQIGVFYVLYF 65 (260)
T ss_pred CcchHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHH---Hhc-c------CHhHHHH--HHHHHHHHHHHHHHHHH
Confidence 6788889998643 246788999999888877666654 222 1 1112222 23333344678999999
Q ss_pred HHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHH
Q 018904 138 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSG 217 (349)
Q Consensus 138 ~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~a 217 (349)
+|++|+|+++.+++.++.|+++++++.+++|||++++||.|++++++|+.++..+++. +....|+++.+.++++++
T Consensus 66 ~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~----~~~~~G~~~~l~a~~~~a 141 (260)
T TIGR00950 66 VAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL----SINPAGLLLGLGSGISFA 141 (260)
T ss_pred HHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc----cccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988654321 245689999999999999
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHH-----HHHHHHHHHHHHHHH
Q 018904 218 FAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL-----MILNHALSGIAVSMV 292 (349)
Q Consensus 218 l~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~i~~~a~~g~~~~~~ 292 (349)
.++++.|+..++.+. +....+.+....+.++..+.....+... . .+...|. .++...++..+..+.
T Consensus 142 ~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~a 212 (260)
T TIGR00950 142 LGTVLYKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAWFLGPNP-----Q---ALSLQWGALLYLGLIGTALAYFLWNKG 212 (260)
T ss_pred HHHHHHhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCCC-----C---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876553 2222222223344444443332221110 0 1222232 223334455556667
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh
Q 018904 293 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSV 339 (349)
Q Consensus 293 ~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv 339 (349)
+|+.++...+...+.+|+++.+++++++||+++..+++|.++++.|+
T Consensus 213 ~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 213 LTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 88888888899999999999999999999999999999999999986
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.92 E-value=2.8e-22 Score=187.53 Aligned_cols=269 Identities=12% Similarity=-0.026 Sum_probs=193.0
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhh
Q 018904 43 NWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVY 122 (349)
Q Consensus 43 ~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (349)
...+++.++++.++.|+.+.+++|+.- .+++|.+.+++|.++..++.+++. .+++. +. ++|+....
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~----~~~~~~~~~~~R~~~a~l~l~~~~---~~~~~-----~~--~~~~~~~~ 74 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLF----PLVGAPGVTALRLALGTLILIAIF---KPWRL-----RF--AKEQRLPL 74 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHH----HHcCHHHHHHHHHHHHHHHHHHHH---hHHhc-----cC--CHHHHHHH
Confidence 336788999999999999999999875 358999999999999987776654 22211 11 12333335
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccc
Q 018904 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTP 202 (349)
Q Consensus 123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~ 202 (349)
...|+++...+.+.|++++|+|++.+.++.++.|+++++++. ||.++ +.++.++++|+.++..++.+. .+..
T Consensus 75 ~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~--~~~~ 146 (293)
T PRK10532 75 LFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDV--SHVD 146 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCc--ccCC
Confidence 556667788899999999999999999999999999998873 55554 455677899998875332111 1234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHH-----HHH
Q 018904 203 LQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFI-----TVL 277 (349)
Q Consensus 203 ~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l 277 (349)
..|+++.+++++++|++.++.||..++.+. . ....+ ...+.+...+.....+.+. .++.. .++
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~--~-~~~~~-~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~l~l 214 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGP--A-TVAIG-SLIAALIFVPIGALQAGEA--------LWHWSILPLGLAV 214 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCc--h-HHHHH-HHHHHHHHHHHHHHccCcc--------cCCHHHHHHHHHH
Confidence 579999999999999999999998766543 2 22332 2333333333222211100 01222 233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 278 MILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 278 ~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
.++.+.++..+..+.+++.++...+...+.+|+++.++|++++||+++..+++|+++|+.|+..+...
T Consensus 215 gv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 215 AILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 34444455556667778889999999999999999999999999999999999999999999887643
No 13
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.90 E-value=1e-20 Score=177.82 Aligned_cols=260 Identities=21% Similarity=0.323 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHH
Q 018904 77 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI 156 (349)
Q Consensus 77 ~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~p 156 (349)
.|..+.+...+...+++.+.. ...+. + + .+.+....+.+.++++.+++.+.+.+++|+|.++.+++++++|
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~---~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~ 101 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILL---SLFKF--P-K---SRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKP 101 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHH---Hhccc--c-C---CCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHH
Confidence 368888888888777777665 22211 1 1 1123344578889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018904 157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL-----QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP 231 (349)
Q Consensus 157 l~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~-----~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~ 231 (349)
+++++++++++|||++++||.++++.++|+++....+..+... .....|+++++++.++.|+.++++||..++++
T Consensus 102 i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~ 181 (303)
T PF08449_consen 102 IPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG 181 (303)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999987654322111 11234999999999999999999999999887
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHH---hchhhhhhccccccChHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018904 232 SRNINVQNFWLYVFGMAFNAVAIVI---QDFDAVMNKGFFHGYSFITV---LMILNHALSGIAVSMVMKYADNIVKVYST 305 (349)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---l~i~~~a~~g~~~~~~~k~~~~i~~~~~~ 305 (349)
. +.+...++...++.++..+.... .+..+.. .+...++...+ +..+..+++...+.+..+..++...+...
T Consensus 182 ~-~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~--~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~ 258 (303)
T PF08449_consen 182 K-SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAI--RFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVT 258 (303)
T ss_pred C-cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHH
Confidence 6 55666677778888777665543 1111110 11111111111 12234455556667778889999999999
Q ss_pred HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCCCC
Q 018904 306 SVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 348 (349)
Q Consensus 306 ~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~~~ 348 (349)
+++.+++.++|+++||+++++.+++|.++++.|+.+|+..+++
T Consensus 259 t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k 301 (303)
T PF08449_consen 259 TLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK 301 (303)
T ss_pred HHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999876543
No 14
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.90 E-value=1.9e-22 Score=181.18 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=193.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCC--ccc
Q 018904 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD--RVL 199 (349)
Q Consensus 122 ~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~--~~~ 199 (349)
+.+|+..|+.+|.+.++++.+.++...+.. +.+.+.++++....++++++..||.++.....|+..++.++..+ ...
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~ 80 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMF 80 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccc
Confidence 568899999999999999999999999999 99999999999999999999999999999999999887654321 112
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHH
Q 018904 200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI 279 (349)
Q Consensus 200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 279 (349)
++...|..+.+.+++++++.++|+|+..|+++. ..+.+++++..++.+.+.......+.+...+.+++++++...|..+
T Consensus 81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (222)
T TIGR00803 81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG 159 (222)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence 356789999999999999999999998877654 7899999999999887665544445554555567788899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904 280 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 280 ~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~ 342 (349)
+.+++++.++++++||.|++.+++...++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 999999999999999999999999999999999999999999999999999999999999886
No 15
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=166.56 Aligned_cols=289 Identities=19% Similarity=0.255 Sum_probs=204.3
Q ss_pred HHHHHHHHHhHHHHHHHHhhc---cC----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-------ccccc
Q 018904 50 VTLALTVLTSSQAILIVWSKR---AG----KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN-------RLSTT 115 (349)
Q Consensus 50 ~l~~~~~~~s~~~i~~k~s~~---~~----~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~-------~~~~~ 115 (349)
+-++.+.-.+.|.++.||+.+ +| ++++-....+|+.|+.++.+-..+- .+..++.... +.+..
T Consensus 7 ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir---~~sn~~g~~s~~~~ilsq~~~p 83 (372)
T KOG3912|consen 7 LSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR---LRSNGQGVSSDLDSILSQDSSP 83 (372)
T ss_pred hhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCcccccccccccccCC
Confidence 444567778889999999864 22 4566778899999999766544333 2322221111 11122
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC--
Q 018904 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS-- 193 (349)
Q Consensus 116 ~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~-- 193 (349)
.+. ..+..|++++.....+.|.|+.+++++.+|+++...++||++++..+||++++.+||+|+....+|++++...+
T Consensus 84 f~p-~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~ 162 (372)
T KOG3912|consen 84 FNP-VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH 162 (372)
T ss_pred CCc-ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecc
Confidence 333 34666999999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred -CCC--cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHH-HHHHH---Hhchhhhh--h
Q 018904 194 -NSD--RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFN-AVAIV---IQDFDAVM--N 264 (349)
Q Consensus 194 -~~~--~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~-~~~~~---~~~~~~~~--~ 264 (349)
.++ +..++...|+++++.+.+.-|+..|+.||.+|+++..|... .-+-..+|.++. ++... ...+++.. .
T Consensus 163 ~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~a-vg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~ 241 (372)
T KOG3912|consen 163 LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQA-VGWEGLFGLVILSLLAIPMYYIPSGDSFSCNP 241 (372)
T ss_pred cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHH-hhhhhhHHHHHHHHHHHHHhheecCCcCcCCC
Confidence 111 22356789999999999999999999999999987634433 344567774433 32221 11111100 0
Q ss_pred ccccccChHHHHH-----HHHHHHHHHHHH---------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 018904 265 KGFFHGYSFITVL-----MILNHALSGIAV---------SMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFL 330 (349)
Q Consensus 265 ~~~~~~~~~~~~l-----~i~~~a~~g~~~---------~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~l 330 (349)
.|.+..+.. .|. ..+..++++..+ -.+.|+.++..+.....++..+.++++..+..|.+...|+.
T Consensus 242 ~g~~eD~~~-~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqil 320 (372)
T KOG3912|consen 242 RGVLEDWGD-AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQIL 320 (372)
T ss_pred CcchhhHHH-HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 111111110 000 001122222222 24568888888989999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcC
Q 018904 331 GSIVVSVSVYLHSA 344 (349)
Q Consensus 331 G~~lV~~gv~l~~~ 344 (349)
|.++.+.|+.+||.
T Consensus 321 GFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 321 GFLILIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999985
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.88 E-value=2.4e-20 Score=171.01 Aligned_cols=250 Identities=14% Similarity=0.056 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-cccc-hhhhhh
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLD-EVIVYP 123 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~-~~~~-~l~~~~ 123 (349)
++++++++..+.|+.+++++|.. .+++|.++++.|.+++.++.+++.. .++++....++.+ .+++ +.....
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-----~~~~~~~i~~~R~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-----KPLPATDILGHRMIWSFPFMLLSVT--LFRQWAALIERLKRIQKRPLILSLL 74 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHhCcccchHHHHHH
Confidence 46677888999999999999984 2489999999999998776555442 1111100001111 1122 233567
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccch
Q 018904 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPL 203 (349)
Q Consensus 124 i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~ 203 (349)
+.|++...++.++++|++++++++++++.++.|+++++++++++|||++++||++++++++|++++..++. + ..
T Consensus 75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-~----~~- 148 (256)
T TIGR00688 75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-S----LP- 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-C----ch-
Confidence 77888889999999999999999999999999999999999999999999999999999999998754321 1 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHH--HHH
Q 018904 204 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM--ILN 281 (349)
Q Consensus 204 ~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--i~~ 281 (349)
.+.+++++++|.+.++.|+..++ +. . +.........++........++....+ ......+.++. .+.
T Consensus 149 ---~~~l~aa~~~a~~~i~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~ 217 (256)
T TIGR00688 149 ---WEALVLAFSFTAYGLIRKALKNT-DL-A---GFCLETLSLMPVAIYYLLQTDFATVQQ---TNPFPIWLLLVLAGLI 217 (256)
T ss_pred ---HHHHHHHHHHHHHHHHHhhcCCC-Cc-c---hHHHHHHHHHHHHHHHHHHhccCcccc---cCchhHHHHHHHHHHH
Confidence 34688999999999999886442 21 1 111101111222221111112111000 00111112211 123
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018904 282 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFL 319 (349)
Q Consensus 282 ~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~l 319 (349)
.+++..+..+.+|+.++...+...+++|+++.++++++
T Consensus 218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677788899999999999999999999999764
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.87 E-value=3.3e-20 Score=172.51 Aligned_cols=270 Identities=11% Similarity=0.067 Sum_probs=174.0
Q ss_pred HHHHHHHHHHhHHHHHHH-HhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904 49 VVTLALTVLTSSQAILIV-WSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (349)
Q Consensus 49 ~~l~~~~~~~s~~~i~~k-~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l 127 (349)
++-++..+.++...+..| .+++ .++.+ +.+.....++.+|+. ..+....+++..+ ++........++
T Consensus 4 ~~~~~aa~~~a~~~~~~k~~~~~-----~~~~~--~~~~~~~~~~l~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~ 71 (281)
T TIGR03340 4 TLVVFSALMHAGWNLMAKSHADK-----EPDFL--WWALLAHSVLLTPYG---LWYLAQVGWSRLP--ATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCc-----hhHHH--HHHHHHHHHHHHHHH---HHhcccCCCCCcc--hhhHHHHHHHHH
Confidence 455667888888888888 4432 22332 444444555555554 2211111111111 122223455566
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHH
Q 018904 128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWI 207 (349)
Q Consensus 128 l~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~l 207 (349)
....++.+.+.|+++.|+++.+.+.++.|+++++++++++|||++++||.|+.+++.|+.++..++.. +....|+.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~----~~~~~g~~ 147 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA----QHRRKAYA 147 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc----ccchhHHH
Confidence 67899999999999999999999999999999999999999999999999999999999987654321 12346888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHH-HHHHHH---hchhhhhhccccccChH--HHHHHHHH
Q 018904 208 MAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFN-AVAIVI---QDFDAVMNKGFFHGYSF--ITVLMILN 281 (349)
Q Consensus 208 l~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~--~~~l~i~~ 281 (349)
+.++++++++++++..|+..++.++ . ....+....+.+.. .+.... .+..... ...... ..+...+.
T Consensus 148 ~~l~aal~~a~~~i~~k~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 148 WALAAALGTAIYSLSDKAAALGVPA--F-YSALGYLGIGFLAMGWPFLLLYLKRHGRSMF----PYARQILPSATLGGLM 220 (281)
T ss_pred HHHHHHHHHHHhhhhccccccchhc--c-cccHHHHHHHHHHHHHHHHHHHHHHhccchh----hhHHHHHHHHHHHHHH
Confidence 8999999999999988876443322 1 00111111222221 111111 1111000 000011 12222233
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 018904 282 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL 341 (349)
Q Consensus 282 ~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l 341 (349)
.+++..+..+.+++.++...+...+.+|+++.++|++++||+++..+++|+++|+.|+++
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 334445555667777776667777889999999999999999999999999999999875
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.86 E-value=1.4e-18 Score=160.92 Aligned_cols=283 Identities=16% Similarity=0.151 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 125 (349)
......+...+.|+......|....+ +.++....+.|.+....+..+.. .++.. .+.+..++..+.....
T Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~ 76 (292)
T COG0697 7 LGLLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLL---LLEPR----GLRPALRPWLLLLLLA 76 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHH---Hhhcc----cccccccchHHHHHHH
Confidence 34556666778899998888876532 45667777778888776633333 22111 0111111122334555
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHH-HHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchh
Q 018904 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ 204 (349)
Q Consensus 126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~-~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~ 204 (349)
++....++.+.+.++++++++.++++.++.|++++++++ +++|||+++++|.+++++++|+.++..++..+. .+ ...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~-~~-~~~ 154 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG-IL-SLL 154 (292)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch-hH-HHH
Confidence 566788999999999999999999999999999999997 677999999999999999999999987643221 11 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHH
Q 018904 205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHAL 284 (349)
Q Consensus 205 G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~ 284 (349)
|+.+.+++++++|++.++.|+.. +.+. ......... .+...........+.. .......+....+..++..++
T Consensus 155 g~~~~l~a~~~~a~~~~~~~~~~-~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 155 GLLLALAAALLWALYTALVKRLS-RLGP--VTLALLLQL-LLALLLLLLFFLSGFG---APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCCh--HHHHHHHHH-HHHHHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 3322 111110111 1111111111111110 000000111122223333334
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCCC
Q 018904 285 SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 347 (349)
Q Consensus 285 ~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~~ 347 (349)
+..+..+.++..++...+......++++.+++++++||+++..+++|.++++.|+.+.+.+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 290 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR 290 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 455556667777777777777899999999999999999999999999999999998876643
No 19
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.70 E-value=1.5e-17 Score=147.11 Aligned_cols=269 Identities=10% Similarity=0.102 Sum_probs=176.2
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCccccccchhhhhhHHHHH
Q 018904 50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGV-TDDNRLSTTLDEVIVYPIPAVL 128 (349)
Q Consensus 50 ~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~ll 128 (349)
++...-++.+++.+..|... .+|-+..-.|.+..+++.+|.+. +++... .+.. + ++. +.++|+.
T Consensus 42 l~~vs~ff~~~~vv~t~~~e------~~p~e~a~~r~l~~mlit~pcli--y~~~~v~gp~g--~--R~~---LiLRg~m 106 (346)
T KOG4510|consen 42 LLTVSYFFNSCMVVSTKVLE------NDPMELASFRLLVRMLITYPCLI--YYMQPVIGPEG--K--RKW---LILRGFM 106 (346)
T ss_pred ehhhHHHHhhHHHhhhhhhc------cChhHhhhhhhhhehhhhheEEE--EEeeeeecCCC--c--EEE---EEeehhh
Confidence 33334445555555555554 44666777777777777777652 232221 1111 1 111 3455666
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCC----C---Cc--cc
Q 018904 129 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN----S---DR--VL 199 (349)
Q Consensus 129 ~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~----~---~~--~~ 199 (349)
.+....+.|+|++|++.+.+.++..+.|.+|.++++.+||||.|+..-++..+.+.||+++..++. . +. .-
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~ 186 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQV 186 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccc
Confidence 677778999999999999999999999999999999999999999999999999999999977631 1 00 11
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHHHHHHHH-hchhhhhhccccccChHHHHH
Q 018904 200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS-RNINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVL 277 (349)
Q Consensus 200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~-~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 277 (349)
.....|....+.++++.|--.++.|++-|+.+. .+.+ +....+.+..++.... .+++ .+.. +-+++...
T Consensus 187 ~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvs----yf~~i~lV~s~I~~~~ig~~~-lP~c----gkdr~l~~ 257 (346)
T KOG4510|consen 187 EYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVS----YFSLITLVVSLIGCASIGAVQ-LPHC----GKDRWLFV 257 (346)
T ss_pred cccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEeh----HHHHHHHHHHHHHHhhcccee-cCcc----ccceEEEE
Confidence 245688888888888888888888888777542 1222 1222333333333221 1211 1111 11111111
Q ss_pred HHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904 278 MIL-NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 278 ~i~-~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~ 342 (349)
.+. ..-++++++...+..-.+-..+...+...+++.++.+++|||.||++.++|+++|+.+....
T Consensus 258 ~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 258 NLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred EehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 111 22234566666665555556677888999999999999999999999999999999887543
No 20
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.69 E-value=3.1e-14 Score=128.56 Aligned_cols=256 Identities=16% Similarity=0.242 Sum_probs=200.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHH
Q 018904 77 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI 156 (349)
Q Consensus 77 ~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~p 156 (349)
++..++|...+.+++++..++. +++. +. ...+.++.+...++.+.+...++|.|++|++-++..+-.+++.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~--~~k~---~~----~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKm 120 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLK--WWKK---EL----SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKM 120 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh--cccc---cC----CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhh
Confidence 5678899999999999877663 2221 11 1223455678888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCC----cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018904 157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD----RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 232 (349)
Q Consensus 157 l~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~----~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~ 232 (349)
+.++++..++.|+|++..+.+...+...||.+....++++ ....+..+|++++...-++.|+.+..++++.|+...
T Consensus 121 IPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~ 200 (327)
T KOG1581|consen 121 IPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKV 200 (327)
T ss_pred hHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCc
Confidence 9999999999999999999999999999999887553322 122367899999999999999999999999997654
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018904 233 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITV---LMILNHALSGIAVSMVMKYADNIVKVYSTSVAM 309 (349)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~ 309 (349)
+.+.+.+.+..++.+.+....+.. +.-.....|...+....+ +.-.+.++|+..+.+.++..++++-.....++-
T Consensus 201 -s~~~mM~~vNLf~~i~~~~~li~q-g~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk 278 (327)
T KOG1581|consen 201 -SSLHMMFGVNLFSAILNGTYLILQ-GHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRK 278 (327)
T ss_pred -cHhHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHH
Confidence 666667777888888888775422 110000112222222222 233456778888889999999998888889999
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904 310 LLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 310 v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~ 343 (349)
+++.++|.++||+++++.|++|..+|+.|+++-.
T Consensus 279 ~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 279 MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence 9999999999999999999999999999987543
No 21
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.8e-15 Score=131.69 Aligned_cols=221 Identities=15% Similarity=0.178 Sum_probs=169.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCC--Cc
Q 018904 120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNS--DR 197 (349)
Q Consensus 120 ~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~--~~ 197 (349)
+.|+..+..|.++....+.|+||+|-++..+-.+++|+-++++.+++.++++++++..++++.++||++....+.. +.
T Consensus 86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~ 165 (337)
T KOG1580|consen 86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGA 165 (337)
T ss_pred hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCC
Confidence 4688888899999999999999999999999999999999999999999999999999999999999998876432 12
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHH-
Q 018904 198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITV- 276 (349)
Q Consensus 198 ~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (349)
..+....|.++.+++-...++.+..++++.+.+.... .-+...+.+++.+.....+++ .++.-.-.-|.+.++...|
T Consensus 166 e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g-~~MM~~~NlwStL~Lg~g~lf-TGElweF~yF~~RhP~~~~~ 243 (337)
T KOG1580|consen 166 EDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTG-TSMMFYTNLWSTLYLGAGLLF-TGELWEFFYFVQRHPYVFWD 243 (337)
T ss_pred cccccchHHHHHHHHHHhcccchhHHHHHHHhhccCc-hhhHHHHHHHHHHHhhhhhee-hhhHHHHHHHHHhccHHHHH
Confidence 2346789999999999999999999999877755422 223345566777666554432 1110000001111221111
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904 277 --LMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 277 --l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~ 342 (349)
+.-+..++|.+++.....+.+....+..++.+..|+++.|+++|+++++..||+|..+|+.+...=
T Consensus 244 l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 244 LTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 122345667787777777888888888888999999999999999999999999999999998643
No 22
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.65 E-value=2.3e-13 Score=127.10 Aligned_cols=267 Identities=12% Similarity=0.129 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (349)
Q Consensus 48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l 127 (349)
+++.++..++|+++++..|... ..++.+.+ +..+..++...+... .++ . + +..++....-.+.|+
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~~-----g~~~~~~~--~~~~g~l~~~~~~~~-~~~-~-----~-~~~~~~~~~g~l~G~ 67 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKIG-----GGPYSQTL--GTTFGALILSIAIAI-FVL-P-----E-FWALSIFLVGLLSGA 67 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhccC-----CCHHHHHH--HHHHHHHHHHHHHHH-HhC-C-----c-ccccHHHHHHHHHHH
Confidence 4566778899999999998764 24444444 444443333322211 221 1 1 111222223455566
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHhh-hHHHHHHHHHHHHhcCCCchHH----HHHHHHHHhhhhhccccCCCCcc-c--
Q 018904 128 LYLVKNLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQ----WAAFILLCCGCTTAQLNSNSDRV-L-- 199 (349)
Q Consensus 128 l~~~~n~l~~~al~~~~~~~~~ll~~-~~pl~talls~~~Lkekls~~q----w~gl~l~~~Gv~lv~~~~~~~~~-~-- 199 (349)
+....|.+++.+.++++.+.+..+.+ +++++.++++.+++|||.++++ +.|+++.++|+.++...++++.. .
T Consensus 68 ~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~ 147 (290)
T TIGR00776 68 FWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSE 147 (290)
T ss_pred HHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccc
Confidence 68899999999999999999999998 9999999999999999999999 99999999999988654322111 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHH---HHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHH
Q 018904 200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINV---QNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITV 276 (349)
Q Consensus 200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
.+...|+++.++++++++++.+..|+. + .++ ... +..-+...+.+++.+. . +.++ + .+...|
T Consensus 148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~~~--~~~~~~~~~g~~~~~~~~~~~~--~-~~~~------~--~~~~~~ 212 (290)
T TIGR00776 148 FNFKKGILLLLMSTIGYLVYVVVAKAF-G-VDG--LSVLLPQAIGMVIGGIIFNLGH--I-LAKP------L--KKYAIL 212 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHc-C-CCc--ceehhHHHHHHHHHHHHHHHHH--h-cccc------h--HHHHHH
Confidence 223579999999999999999999865 2 332 222 2222222333333222 0 0000 0 111122
Q ss_pred HHHH---HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH----HHHHHHHHHhhhhcC
Q 018904 277 LMIL---NHALSGIAVSMVMK-YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFF----LGSIVVSVSVYLHSA 344 (349)
Q Consensus 277 l~i~---~~a~~g~~~~~~~k-~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~----lG~~lV~~gv~l~~~ 344 (349)
..++ ..+++..+.....+ +.+.......++..|+.+++.+++++||+.+..++ +|.++++.|+.+-..
T Consensus 213 ~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 213 LNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 2222 12333333333335 66666677778889999999999999999999999 999999999887543
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.61 E-value=9.1e-13 Score=119.01 Aligned_cols=274 Identities=15% Similarity=0.164 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904 45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 124 (349)
Q Consensus 45 ~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i 124 (349)
++++++.+.+-++|+..+...|+.+ +.++.++.--|-+-.+.+.+..+.. .|+. ++.....+++|.+..+.+
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~-----~~~~~eIlahRviwS~~~~l~ll~~-~r~~--~~~~~~~~~p~~~~~~~l 77 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLE-----PLPATEILAHRVIWSFPFMLALLFL-LRQW--RELKQLLKQPKTLLMLAL 77 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHHHHH-Hhhh--HHHHHHHhCcHHHHHHHH
Confidence 4678888899999999999999974 5778888888877776666555432 1211 111223456677778888
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchh
Q 018904 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ 204 (349)
Q Consensus 125 ~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~ 204 (349)
.+++...+-.++.+|..+=..-++++=+..+|++..+++.+++|||+++.||+++.++.+||..-..... +-+..
T Consensus 78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-----~lpwv 152 (293)
T COG2962 78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-----SLPWV 152 (293)
T ss_pred HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-----CCcHH
Confidence 8888888888888999999999999999999999999999999999999999999999999998765432 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-HhchhhhhhccccccChHHHHHHHHHHH
Q 018904 205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIV-IQDFDAVMNKGFFHGYSFITVLMILNHA 283 (349)
Q Consensus 205 G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~a 283 (349)
. +.-++.+++|+..-|+ .|-.+..+....++.+ .+..+...+ .+|..+ +....+...++.+...+
T Consensus 153 a----l~la~sf~~Ygl~RK~-~~v~a~~g~~lE~l~l----~p~al~yl~~l~~~~~-----~~~~~~~~~~~LLv~aG 218 (293)
T COG2962 153 A----LALALSFGLYGLLRKK-LKVDALTGLTLETLLL----LPVALIYLLFLADSGQ-----FLQQNANSLWLLLVLAG 218 (293)
T ss_pred H----HHHHHHHHHHHHHHHh-cCCchHHhHHHHHHHH----hHHHHHHHHHHhcCch-----hhhcCCchHHHHHHHhh
Confidence 3 4446677777766544 3333222232222221 222222222 222221 11101122222222212
Q ss_pred H-HH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 284 L-SG---IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 284 ~-~g---~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
. .. .+.+..-|..+-...++.++++|..-.+++++++||+++..+++..+.|-.|+.+|..+
T Consensus 219 ~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 219 LVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 12222335555556678899999999999999999999999999999999999988753
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.53 E-value=5.5e-14 Score=130.81 Aligned_cols=220 Identities=17% Similarity=0.246 Sum_probs=154.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCccc
Q 018904 120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL 199 (349)
Q Consensus 120 ~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~ 199 (349)
......|+.+.+...+.+.++++++.+.+|++..+.|+++.++++++.+|+.++..++.++....||.+....+.
T Consensus 84 ~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~----- 158 (316)
T KOG1441|consen 84 RTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL----- 158 (316)
T ss_pred HHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc-----
Confidence 345666778899999999999999999999999999999999999999999999999999999999999876432
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHH--HHHHHHHHHHH-HHHHHhchhhhhhccccccChHHHH
Q 018904 200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNF--WLYVFGMAFNA-VAIVIQDFDAVMNKGFFHGYSFITV 276 (349)
Q Consensus 200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~--~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
+....|.+..+.+.+..++.+++.++++++++. +..-.|+ ++.-.+..+.+ +.....++... ..-....++...+
T Consensus 159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~-~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~ 236 (316)
T KOG1441|consen 159 SFNLFGFISAMISNLAFALRNILSKKLLTSKGE-SLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFL 236 (316)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhH
Confidence 356899999999999999999999999964332 2222222 22223333333 32222222211 0001112333322
Q ss_pred HHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904 277 LMILNHAL---SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 277 l~i~~~a~---~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
..++...+ .+.....++.+.++++-+.+....-++....|+++|++++|+.+.+|.++.+.|+++|++.|
T Consensus 237 ~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 237 ILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 22222211 12233344455556655566555666777889999999999999999999999999999755
No 25
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.51 E-value=2.7e-12 Score=116.08 Aligned_cols=285 Identities=16% Similarity=0.202 Sum_probs=188.0
Q ss_pred HHHHHHHHHhHHHHHHHHhhcc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhh-hhhHHH
Q 018904 50 VTLALTVLTSSQAILIVWSKRA--GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI-VYPIPA 126 (349)
Q Consensus 50 ~l~~~~~~~s~~~i~~k~s~~~--~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~i~~ 126 (349)
..+.+++.|-.-.|..++...+ ...+|| ..++-+..++++.++..... .+++. .++.|...+|++.+ +.+..|
T Consensus 16 ~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fP-Lf~ts~h~~v~flfa~~~~~--l~~~~-~~r~r~~~sw~~~Lr~~aPta 91 (349)
T KOG1443|consen 16 LTLALVLLYYFLSIGLTFYFKWLTKNFHFP-LFVTSLHLAVKFLFAALSRR--LYQCS-VPRARVVLSWRDYLRRLAPTA 91 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCcCCc-hHHHHHHHHHHHHHHHHHHH--HHhcc-CCccccCCcHHHHHHHhhhhh
Confidence 3344557777777777876543 345555 56666777888776665442 22222 22334456787544 455666
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHH
Q 018904 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW 206 (349)
Q Consensus 127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ 206 (349)
+.-+..-.+.+++++|++.+.|++..+..|+|+.+++..+-=||.++.-..-+++..+|+.+....+. +....|.
T Consensus 92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-----qf~i~Gf 166 (349)
T KOG1443|consen 92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-----QFNIEGF 166 (349)
T ss_pred hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-----ceeehhH
Confidence 66778889999999999999999999999999999999998899999888888888889988877643 2457899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHHHHHHHHhch-hhhhhccccccC-hHHHHHHHHHH
Q 018904 207 IMAIVMALLSGFAGVYTEAIMKKRPS--RNINVQNFWLYVFGMAFNAVAIVIQDF-DAVMNKGFFHGY-SFITVLMILNH 282 (349)
Q Consensus 207 ll~l~a~~~~al~~v~~e~~~k~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~i~~~ 282 (349)
.+++++++++|+-..++++++++++. .++.....++.-.-.+..++..+..++ ....+...+... +...+..+...
T Consensus 167 ~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i 246 (349)
T KOG1443|consen 167 FLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLI 246 (349)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHH
Confidence 99999999999999999999988762 111111122221222222222222232 111111111111 11234444444
Q ss_pred HHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904 283 ALSGIAVSMVMKY--------ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 344 (349)
Q Consensus 283 a~~g~~~~~~~k~--------~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~ 344 (349)
+++|. .++++.. .+.+..+.+.-+.-+.+.+++..+.+|+++...++|..+...|+..|..
T Consensus 247 ~l~g~-laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 247 SLGGL-LAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHH-HHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 55554 2343322 2333444555556678999999999999999999999999999999954
No 26
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.47 E-value=9.9e-15 Score=128.51 Aligned_cols=247 Identities=16% Similarity=0.204 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHH
Q 018904 78 VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNII 157 (349)
Q Consensus 78 ~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl 157 (349)
|..-.|+...+-.++=-+++. .|+ +..+..||+ |.+.|+.+.-.|.+..-|.||++....+++-.-.++
T Consensus 48 Pt~QtFl~Y~LLalVY~~~~~--fR~------~~~~~~~~h---Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip 116 (336)
T KOG2766|consen 48 PTSQTFLNYVLLALVYGPIML--FRR------KYIKAKWRH---YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIP 116 (336)
T ss_pred ccHHHHHHHHHHHHHHhhHHH--hhh------HHHHHHHHH---hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhH
Confidence 455567776665444444442 332 123344665 777788888899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCC---CCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 018904 158 STGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN---SDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234 (349)
Q Consensus 158 ~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~---~~~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~ 234 (349)
.+.+++|++||.|+.+.|..|++++..||..+..++- +....+++..|+++++.++.++|.+++.+|.+.|+-+.
T Consensus 117 ~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d~-- 194 (336)
T KOG2766|consen 117 CVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNADR-- 194 (336)
T ss_pred HHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCcH--
Confidence 9999999999999999999999999999998876531 12234578999999999999999999999999988653
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018904 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM---ILNHALSGIAVSMVMKYADNIVKVYSTSVAMLL 311 (349)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~ 311 (349)
....-++..+|.+++.+-.+.+ ..+... . .|++..... .+.+-+.......++|..++..-+.....+-.+
T Consensus 195 -~elm~~lgLfGaIIsaIQ~i~~-~~~~~t---l-~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmw 268 (336)
T KOG2766|consen 195 -VELMGFLGLFGAIISAIQFIFE-RHHVST---L-HWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMW 268 (336)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhh-ccceee---E-eehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHH
Confidence 4444577889999988875543 222111 1 122221111 112222334444555666666556666667777
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 312 TAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 312 t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
+.++ ..||-+.+|...+..+.+..|.++|...
T Consensus 269 sl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 269 SLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred HHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 7777 7889999999999999999999999754
No 27
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.6e-11 Score=111.01 Aligned_cols=282 Identities=16% Similarity=0.167 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHH
Q 018904 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTAN-FLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA 126 (349)
Q Consensus 48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~v-f~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 126 (349)
.+..+...+.-....++-|+.-. .|+||..-.+ +.+.+.. ++.+.++ ++.|.-+. ...+|+..+++..++
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s-~~~v~~l----k~~~lv~~--~~l~~~~~kk~~P~~ 84 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLAS-VLVVLVL----KRLGLVNF--RPLDLRTAKKWFPVS 84 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHH-HHHHHHH----HHhceeec--CCcChHHHHHHccHH
Confidence 33444444444455556676443 4778765444 3444443 3333333 33332111 124577777788888
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHH
Q 018904 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW 206 (349)
Q Consensus 127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ 206 (349)
+++.+.-.....+++|++.+.+.+++...|++|++.-..++|.|.++.-|.++....+|......++.. ....|+
T Consensus 85 ~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s-----f~~~gY 159 (314)
T KOG1444|consen 85 LLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS-----FNLRGY 159 (314)
T ss_pred HHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce-----ecchhH
Confidence 888888888888999999999999999999999999999999999999999999999999887654322 334599
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHH-HHhchhhhhhccccccChHHHHHHHHHHHHH
Q 018904 207 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI-VIQDFDAVMNKGFFHGYSFITVLMILNHALS 285 (349)
Q Consensus 207 ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~ 285 (349)
.+++..+++.+...++.|+..+..+- +-+...++-.+.+.+...+.. +.+|++..... +-.......+..+...++.
T Consensus 160 ~w~~~n~~~~a~~~v~~kk~vd~~~l-~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~-~~~~~~~~~~~~~~lScv~ 237 (314)
T KOG1444|consen 160 SWALANCLTTAAFVVYVKKSVDSANL-NKFGLVFYNNLLSLPPLLILSFITGELDALSLN-FDNWSDSSVLVVMLLSCVM 237 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc-cceeEEeehhHHHHHHHHHHHHHhcchHHHHhh-cccccchhHHHHHHHHHHH
Confidence 99999999999999999988766432 111111122233444444333 34555522111 1001123345555555555
Q ss_pred HHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 286 GIAVSMVM----KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 286 g~~~~~~~----k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
|..++|.. +..++.............+.+.+.+.+|++.++.-++|..+-++|..+|+..
T Consensus 238 gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~ 301 (314)
T KOG1444|consen 238 GFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA 301 (314)
T ss_pred HHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence 55555533 3334444334443445567777778889999999999999999998888754
No 28
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.42 E-value=8.5e-12 Score=115.79 Aligned_cols=219 Identities=19% Similarity=0.207 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCC---cccc
Q 018904 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD---RVLQ 200 (349)
Q Consensus 124 i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~---~~~~ 200 (349)
.-+.+-+++|...+.|+++++.+..+++.++.-+||..++..+.+||+|+.|.+++++.+.||+++..+++.+ ...+
T Consensus 164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~ 243 (416)
T KOG2765|consen 164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS 243 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence 3345578899999999999999999999999999999999999999999999999999999999998764322 1234
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHH
Q 018904 201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRP-SRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI 279 (349)
Q Consensus 201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 279 (349)
++..|.++.+++|+++|.|.+..||-..+++ ..++...--+.+.+..++..+..++.+.- ..+ .|.-.+..-...+
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e--~F~lP~~~q~~~v 320 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEE--RFELPSSTQFSLV 320 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccC--cccCCCCceeEee
Confidence 6789999999999999999999998776663 22332111122222233332222221211 000 0111111112222
Q ss_pred HHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 280 LNHALSGIAVSMVMKY-----ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 280 ~~~a~~g~~~~~~~k~-----~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
+..++.+.+++=.+|. .+........++++.++.+...++=|.++|+.+++|.+.|+.|-++.|..
T Consensus 321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence 2333444444433333 33444444455677899999999889999999999999999999887753
No 29
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.37 E-value=1.2e-09 Score=96.80 Aligned_cols=256 Identities=14% Similarity=0.062 Sum_probs=157.0
Q ss_pred HHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHH
Q 018904 51 TLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYL 130 (349)
Q Consensus 51 l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~ 130 (349)
++..+-.+++..+. |.. .+...+..+.-+|-.+..++.+++. |.||++- -+.+|+.+..|+ +...
T Consensus 18 l~amvsiq~Gas~A-k~L----FP~vG~~g~t~lRl~~aaLIll~l~-RPwr~r~------~~~~~~~~~~yG---vsLg 82 (292)
T COG5006 18 LVAMVSIQSGASFA-KSL----FPLVGAAGVTALRLAIAALILLALF-RPWRRRL------SKPQRLALLAYG---VSLG 82 (292)
T ss_pred HHHHHHHHhhHHHH-HHH----ccccChhhHHHHHHHHHHHHHHHHh-hHHHhcc------ChhhhHHHHHHH---HHHH
Confidence 33445555554433 333 2456678888899888877777665 2222211 123455544444 5567
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHH
Q 018904 131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAI 210 (349)
Q Consensus 131 ~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l 210 (349)
.-|.++|.+++.+|.+.+..+-++.|+.+++++ .||..-.-|.+ +.+.|..+..-.+.+ ..+....|..+.+
T Consensus 83 ~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vwva--LAvlGi~lL~p~~~~--~~~lDp~Gv~~Al 154 (292)
T COG5006 83 GMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVWVA--LAVLGIWLLLPLGQS--VWSLDPVGVALAL 154 (292)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhhHHHHH--HHHHHHHhheeccCC--cCcCCHHHHHHHH
Confidence 889999999999999999999999999988764 45555555655 556666655322211 1234578999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHHHHHHH
Q 018904 211 VMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVS 290 (349)
Q Consensus 211 ~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~g~~~~ 290 (349)
.+..||+.|=+..+|.-+..+. ......-+. .+.++.++.-....+. .+ +++.....-+..++.++.+.
T Consensus 155 ~AG~~Wa~YIv~G~r~g~~~~g--~~g~a~gm~-vAaviv~Pig~~~ag~-----~l---~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 155 GAGACWALYIVLGQRAGRAEHG--TAGVAVGML-VAALIVLPIGAAQAGP-----AL---FSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred HHhHHHHHHHHHcchhcccCCC--chHHHHHHH-HHHHHHhhhhhhhcch-----hh---cChHHHHHHHHHHHHhcccc
Confidence 9999999999999988754332 111111111 1222222221111111 11 12222222233344445555
Q ss_pred HHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhh
Q 018904 291 MVM-----KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVY 340 (349)
Q Consensus 291 ~~~-----k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~ 340 (349)
|.+ +..+.-.-+...+.+|.++.+.|++++||++|..||+|.+.|+.+..
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 544 33333333444567789999999999999999999999999998876
No 30
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.6e-10 Score=102.97 Aligned_cols=293 Identities=17% Similarity=0.182 Sum_probs=191.7
Q ss_pred chhhhhhHHHHHHHHHHHHHhHHHHHHHHhhc-cCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Q 018904 39 SELANWKRKSVVTLALTVLTSSQAILIVWSKR-AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLD 117 (349)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~s~~~i~~k~s~~-~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~ 117 (349)
++.++|++-.+......+++-.++.+-.+..+ .+..+|. +...+.+.++-..+.+ ......++ .+....||
T Consensus 36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~G-WylTlvQf~~Ysg~gl------ie~~~~~~-k~r~iP~r 107 (367)
T KOG1582|consen 36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFG-WYLTLVQFLVYSGFGL------IELQLIQT-KRRVIPWR 107 (367)
T ss_pred ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccc-hHHHHHHHHHHHhhhh------eEEEeecc-cceecchh
Confidence 44566665444445555666666766655443 3333343 4444444333111111 11111111 22234466
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCc
Q 018904 118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR 197 (349)
Q Consensus 118 ~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~ 197 (349)
. |.+.+.+-.....+.+-++.|++-++..+..+++.+-+.+.+.++=++|+.+....+..+..+|.++..+.++..
T Consensus 108 t---Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~- 183 (367)
T KOG1582|consen 108 T---YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT- 183 (367)
T ss_pred H---hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc-
Confidence 4 777777778889999999999999999999999999999999999999999999999999999999987765322
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHH
Q 018904 198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL 277 (349)
Q Consensus 198 ~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 277 (349)
..+....|+.+.-+|-++.|+-+-.+||.+|.++. +.....++-+..|.++.+..+.. .++-.....+...++..++.
T Consensus 184 sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~-ss~EmvfySy~iG~vflf~~mvl-Tge~f~a~~fcaehp~~tyG 261 (367)
T KOG1582|consen 184 SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPA-SSSEMVFYSYGIGFVFLFAPMVL-TGELFSAWTFCAEHPVRTYG 261 (367)
T ss_pred CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC-CcceEEEeeecccHHHHHHHHHh-cccchhhhHHHHhCcHhHHH
Confidence 22345789999999999999999999999998765 22222233344455555444332 11111111122222333333
Q ss_pred HHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 278 MILNHALSG----IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 278 ~i~~~a~~g----~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
..+.-++.+ ..+-..+|..++......++.+.-+|.++|+++|..++|....-|..+|+.|+++-..+
T Consensus 262 y~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 262 YAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence 332222211 22233456678888888888889999999999999999999999999999999965443
No 31
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.5e-12 Score=116.09 Aligned_cols=215 Identities=17% Similarity=0.282 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhc-CChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCc---
Q 018904 122 YPIPAVLYLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR--- 197 (349)
Q Consensus 122 ~~i~~ll~~~~n~l~~~al~~-~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~--- 197 (349)
|++.-..++..|.+.++++++ +|.+..-+.++..++.+++++++++|+|+|.+|+.++++..+|+++.....+.+.
T Consensus 67 Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~ 146 (330)
T KOG1583|consen 67 YAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSK 146 (330)
T ss_pred hheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhh
Confidence 555555678899999999997 9999999999999999999999999999999999999999999998765322110
Q ss_pred --------c---cccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHH------hchh
Q 018904 198 --------V---LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI------QDFD 260 (349)
Q Consensus 198 --------~---~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~ 260 (349)
. ......|+.+...+.+.+|..++|+|...|+++. .. ..++ ++.=.+.++..+. .++.
T Consensus 147 ~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK-h~-~Eal---FytH~LsLP~Flf~~~div~~~~ 221 (330)
T KOG1583|consen 147 LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK-HW-KEAL---FYTHFLSLPLFLFMGDDIVSHWR 221 (330)
T ss_pred hcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ch-HHHH---HHHHHhccchHHHhcchHHHHHH
Confidence 0 0124579999999999999999999999999875 22 2222 2332233333221 1111
Q ss_pred hh--------hhccccccChHHHHHHHHHHHHHH-HHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHH
Q 018904 261 AV--------MNKGFFHGYSFITVLMILNHALSG-IAVSMVMKY---ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAF 328 (349)
Q Consensus 261 ~~--------~~~~~~~~~~~~~~l~i~~~a~~g-~~~~~~~k~---~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~ 328 (349)
.. +..|+. -+..|..++.+.+.+ .|+..++-. .++........++..++.++|+..|++++|++.
T Consensus 222 ~~~~se~~~~p~~g~~---vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h 298 (330)
T KOG1583|consen 222 LAFKSESYLIPLLGFK---VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWH 298 (330)
T ss_pred HHhcCcceeccccCcc---ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHH
Confidence 11 111111 233455445444433 233332211 123333344556778999999999999999999
Q ss_pred HHHHHHHHHHhhhhcC
Q 018904 329 FLGSIVVSVSVYLHSA 344 (349)
Q Consensus 329 ~lG~~lV~~gv~l~~~ 344 (349)
|+|+++|+.|..+|..
T Consensus 299 ~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 299 WLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998863
No 32
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.16 E-value=3.3e-10 Score=91.36 Aligned_cols=123 Identities=16% Similarity=0.087 Sum_probs=95.7
Q ss_pred HHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHH-HHHHHHH
Q 018904 57 LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLL 135 (349)
Q Consensus 57 ~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll-~~~~n~l 135 (349)
.|+...++.|... ++++|.+.++.|.+...+ .+++.. ..+++. ....++++.......+.+ ....+.+
T Consensus 2 ~~a~~~~~~k~~~----~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 2 SWAIYSVFSKKLL----KKISPLSITFWRFLIAGI-LLILLL--ILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred eeeeHHHHHHHHh----ccCCHHHHHHHHHHHHHH-HHHHHH--hhcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence 4777788887764 348899999999999886 444332 122111 112234444455666666 5789999
Q ss_pred HHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904 136 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (349)
Q Consensus 136 ~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~ 190 (349)
.+.++++++++..+++.++.|+++.+++++++||+++++||.|+++.+.|+.++.
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998763
No 33
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=5e-11 Score=106.36 Aligned_cols=259 Identities=17% Similarity=0.181 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccc---cccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhh
Q 018904 78 VTTANFLVETLKCALSLAALARIWNHE-GVTDDNRLS---TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKN 153 (349)
Q Consensus 78 ~~~~vf~~e~~~~~i~l~~l~~~~~~~-~~~~~~~~~---~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~ 153 (349)
|....+...++...+|+.+-.. .++. +....+++. ..-|+++.+.+ .+.+--...++.++|++.+-|++=++
T Consensus 61 plf~t~~qcLvt~~~c~~ls~l-s~k~~~~ftfp~~~ldl~t~r~vlplsv---Vfi~mI~fnnlcL~yVgVaFYyvgRs 136 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSL-SVKYPGLFTFPSLQLDLATARQVLPLSV---VFILMISFNNLCLKYVGVAFYYVGRS 136 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccceeccCcccccHHHHHhhcchhh---eeeeehhccceehhhcceEEEEeccc
Confidence 4556666666666666654311 1111 111112222 22244444433 33333344556899999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 018904 154 LNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233 (349)
Q Consensus 154 ~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~ 233 (349)
+..+|+.++++.+||+|-+..-..+.++.+.|.-+=.-.+ +....-...|.++...++++-|+.++++||..-...+
T Consensus 137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE--~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~- 213 (347)
T KOG1442|consen 137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE--GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD- 213 (347)
T ss_pred hhhhHHHHhHHhhcccccccccceeehhheehheeccccc--cccCccchhhhHHHHHHHHHHHHHHHhhheecccccC-
Confidence 9999999999999999999887777666666654432111 1112346789999999999999999999987665555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-hchhhhhhccccccChHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHH
Q 018904 234 NINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM----KYADNIVKVYSTSVA 308 (349)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~a~~g~~~~~~~----k~~~~i~~~~~~~~~ 308 (349)
.+|..+.+...++.++.++.+++ .+.+.+. ++.+.++...|......++.|..+.|+. |..++.+.+...+..
T Consensus 214 ~iw~lt~ynnv~a~lLflpll~lnge~~~v~--~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAk 291 (347)
T KOG1442|consen 214 CIWRLTAYNNVNALLLFLPLLILNGEFQAVV--GFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAK 291 (347)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHcchHHHHc--CcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHH
Confidence 78888888888888877776543 2333222 3333446677888778788887777764 556666666666677
Q ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 309 MLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 309 ~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
...-.++++.+++|..+..-|-|-.+|+.|..+|+.-
T Consensus 292 a~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~v 328 (347)
T KOG1442|consen 292 AAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLV 328 (347)
T ss_pred HHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHH
Confidence 7777888999999999999999999999999999753
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.10 E-value=1.7e-09 Score=86.10 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHH
Q 018904 49 VVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL 128 (349)
Q Consensus 49 ~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll 128 (349)
+..++..++++..+++.|.-- ++.+|....+.|......++..+.+ ..++.+... ..+.|.+....+.|+.
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl----~~vdp~~At~IRtiVi~~~l~~v~~---~~g~~~~~~--~~~~k~~lflilSGla 76 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGL----EGVDPDFATTIRTIVILIFLLIVLL---VTGNWQAGG--EIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHHHHHHHH---hcCceeccc--ccCcceehhhhHHHHH
Confidence 345567888999999999854 4577899999999887777666652 222111110 1234666667777877
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904 129 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (349)
Q Consensus 129 ~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~ 191 (349)
-.+.-.++|.|++.=+++...-+..+.|++++++++++||||+|..+|+|+++..+|++++..
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 888999999999999999999999999999999999999999999999999999999988753
No 35
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.07 E-value=1.1e-09 Score=87.75 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=63.2
Q ss_pred hhHHHHHH-HHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904 122 YPIPAVLY-LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (349)
Q Consensus 122 ~~i~~ll~-~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~ 193 (349)
....|++. ..++.++++|+++.| +...++.++.|+++++++++++|||+++++|.++++.++|++++..++
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 44445554 488999999999999 588899999999999999999999999999999999999999998764
No 36
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.00 E-value=2.2e-08 Score=84.19 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC----CCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhh-c-cccc-cC--hHHH
Q 018904 205 GWIMAIVMALLSGFAGVYTEAIMKKR----PSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMN-K-GFFH-GY--SFIT 275 (349)
Q Consensus 205 G~ll~l~a~~~~al~~v~~e~~~k~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~--~~~~ 275 (349)
|.++++.++++.|+..++.|+.+++. ...+......++...+.++.++.....|..+..+ . .... .. +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67889999999999999999999884 2224444445556667766666554433322111 0 0010 00 2233
Q ss_pred HHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904 276 VLMILNHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 344 (349)
Q Consensus 276 ~l~i~~~a~----~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~ 344 (349)
+..++..++ .......++++.+++..+....+..+++.+.|+++|||++|..+++|.++.+.|+++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 333333333 223445577888999999999999999999999999999999999999999999999974
No 37
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.82 E-value=2.3e-07 Score=84.83 Aligned_cols=133 Identities=14% Similarity=0.004 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904 45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 124 (349)
Q Consensus 45 ~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i 124 (349)
.++.++.++..+.|+...+..|...++ .+.++.+....+..+..++.++.. ...+. + .. .++++......
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~--~-~~--~~~~~~~~~~~ 196 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKK--EGPELLQFTGWVLLLGALLLLPFA---WFLGP--N-PQ--ALSLQWGALLY 196 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhc--CCchHHHHHHHHHHHHHHHHHHHH---HhcCC--C-CC--cchHHHHHHHH
Confidence 357778888999999999998886532 222233444356667666666665 22221 1 11 12334333444
Q ss_pred HHHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhh
Q 018904 125 PAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT 187 (349)
Q Consensus 125 ~~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~ 187 (349)
.+++ ......++++++++.+++..+++.++.|+++++++++++||+++..||.|..+.+.|++
T Consensus 197 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 197 LGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 4444 46788899999999999999999999999999999999999999999999999999873
No 38
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.79 E-value=1.8e-07 Score=81.53 Aligned_cols=222 Identities=12% Similarity=0.126 Sum_probs=143.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCc--c
Q 018904 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR--V 198 (349)
Q Consensus 121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~--~ 198 (349)
.+..++++..+--.-.--++||++.+.+++..++.++.+|..-..++|.|++.....+.++..+.-....+++.... .
T Consensus 70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~ 149 (309)
T COG5070 70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFK 149 (309)
T ss_pred hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHH
Confidence 34555655444333444689999999999999999999999999999999999999999888877766655432110 1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHH-HHHhchhhhhhccccccChHHHHH
Q 018904 199 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVA-IVIQDFDAVMNKGFFHGYSFITVL 277 (349)
Q Consensus 199 ~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 277 (349)
.+..+.|++++...++.++..-...||..|-..... ....++-...+.++.... ++.+||++..-..-+.. +...|+
T Consensus 150 ~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~-d~l~am 227 (309)
T COG5070 150 AQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSV-DSLMAM 227 (309)
T ss_pred hcccCCceEEEehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCCh-HHHHHH
Confidence 124678999999999999988888887665432111 111222233455544433 34577764311111111 223344
Q ss_pred HHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904 278 MILNHALS--GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 344 (349)
Q Consensus 278 ~i~~~a~~--g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~ 344 (349)
.+-..+-. ..+.+++.+..++..-++...+...-..+.|.++|||+.+...+....+=..+..+|..
T Consensus 228 ~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 228 FISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred HHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 33221111 13345556666666666666677777889999999999999998888886666666653
No 39
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.78 E-value=2.9e-06 Score=77.49 Aligned_cols=214 Identities=12% Similarity=0.174 Sum_probs=137.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHh-hhHHHHHHHHHHHHhcCCCchHHHH----HHHHHHhhhhhccc
Q 018904 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILK-NLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTTAQL 191 (349)
Q Consensus 117 ~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~-~~~pl~talls~~~Lkekls~~qw~----gl~l~~~Gv~lv~~ 191 (349)
+.++.-.+.|++..+.+..+|.+++++..+...=+. .++.+.+++.++++++|--+..++. |+++..+|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 666777888999999999999999999988665554 8888999999999999998888876 78888889988876
Q ss_pred cCCCCcc---cccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhcccc
Q 018904 192 NSNSDRV---LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFF 268 (349)
Q Consensus 192 ~~~~~~~---~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (349)
.++.+.. .++...|++..+++.+.+..|.+..+. .+-++-.-+..|.. |+++..........+ .++
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~~~~~~~~lPqai-----Gm~i~a~i~~~~~~~-----~~~ 191 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA-FHVSGWSAFLPQAI-----GMLIGAFIFNLFSKK-----PFF 191 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh-cCCChhHhHHHHHH-----HHHHHHHHHhhcccc-----ccc
Confidence 5433321 234567999999999999999888764 22222112222322 333332222111111 111
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHH----HHHHHHHHHHHhhh
Q 018904 269 HGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLA----FFLGSIVVSVSVYL 341 (349)
Q Consensus 269 ~~~~~~~~l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~----~~lG~~lV~~gv~l 341 (349)
+..++...+.=+.-+++....-......+....-..+..+++++++.|.++|+|+=+.. .++|.++|+.|..+
T Consensus 192 ~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 192 EKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred ccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 11122222211222334443333333333222333355778999999999999997654 57888888887654
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.76 E-value=1.6e-07 Score=80.32 Aligned_cols=203 Identities=12% Similarity=0.181 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHH
Q 018904 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW 206 (349)
Q Consensus 127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ 206 (349)
++.+..|.++..|++.++++.++.+..++-.|+-++++..||+|+...+.++.++...|++.+.+.++ + ..+...|+
T Consensus 61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-~--~a~e~iGi 137 (290)
T KOG4314|consen 61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-E--HADEIIGI 137 (290)
T ss_pred EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-h--hhhhhhhH
Confidence 34678899999999999999999999999999999999999999999999999999999999876543 2 24678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH---HHHHHHHHHH-HHH-----HhchhhhhhccccccChHHHHH
Q 018904 207 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWL---YVFGMAFNAV-AIV-----IQDFDAVMNKGFFHGYSFITVL 277 (349)
Q Consensus 207 ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l---~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~l 277 (349)
.....+++.+|++-|..|+.....+- -....++ .++-.++.-. ..+ ++++++ +....|.
T Consensus 138 ~~AV~SA~~aAlYKV~FK~~iGnAn~---Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qs---------FA~~PWG 205 (290)
T KOG4314|consen 138 ACAVGSAFMAALYKVLFKMFIGNANF---GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQS---------FAAAPWG 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcc---hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHH---------HhhCCch
Confidence 99999999999999999988765321 1111222 2232222211 111 122221 1111222
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904 278 MILNHALSGIAVSMVMK----YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 344 (349)
Q Consensus 278 ~i~~~a~~g~~~~~~~k----~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~ 344 (349)
.....+.-.....+... ....+..+.-..++....+.+..+.-+-..+..++.|.+++..|..+.-.
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 22211111111111111 11222333333344556777777766777888999999999999776543
No 41
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.71 E-value=4.8e-07 Score=75.97 Aligned_cols=140 Identities=12% Similarity=0.165 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcc---CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--Cccc-----cccc
Q 018904 48 SVVTLALTVLTSSQAILIVWSKRA---GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD--NRLS-----TTLD 117 (349)
Q Consensus 48 ~~~l~~~~~~~s~~~i~~k~s~~~---~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~--~~~~-----~~~~ 117 (349)
+++.+...+..+...+..|...++ .+++.++.+..+......++++++.... .++..... .... ...+
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL--LEGPQLSSFFSEIFGEELSSDPN 79 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHhhhhhhcchHH
Confidence 456667888889999888764432 2467889999999999998888886532 22211000 0000 0224
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 118 ~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
........|++....|...|..++++++.+++++.+.|.+.+.++++++++|+++..|+.|+.+.++|+..-
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 455667778888999999999999999999999999999999999999999999999999999999998753
No 42
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.64 E-value=3.4e-07 Score=73.54 Aligned_cols=125 Identities=17% Similarity=0.250 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHHHHHHHHHH
Q 018904 214 LLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293 (349)
Q Consensus 214 ~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~g~~~~~~~ 293 (349)
++||.+.++.|+..++.+ + ...+.+....+.+ ..+.....+..+..+. ....+.......++..+++..+..+.+
T Consensus 1 ~~~a~~~~~~k~~~~~~~--~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS--P-LSITFWRFLIAGI-LLILLLILGRKPFKNL-SPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCC--H-HHHHHHHHHHHHH-HHHHHHhhccccccCC-ChhhhhhhhHhhccceehHHHHHHHHH
Confidence 468889999999988754 2 3333444444443 2222222121110000 000011112222233455566677788
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 294 k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~ 343 (349)
++.+..........+|+++.++++++++|+++..+++|.++++.|+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99888888888999999999999999999999999999999999998753
No 43
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.60 E-value=3.5e-07 Score=72.96 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (349)
Q Consensus 122 ~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~ 190 (349)
.++.-++|..+..+...+++.+|.+.+..+.++.++++++++++++|||++.+||+|+.+.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 333335588899999999999999999999999999999999999999999999999999999998875
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.59 E-value=7.3e-07 Score=71.19 Aligned_cols=128 Identities=16% Similarity=0.280 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHHHHHHHH-hchhhhhhccccccChHHHHHHHHHHH
Q 018904 206 WIMAIVMALLSGFAGVYTEAIMKKRPSR-NINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVLMILNHA 283 (349)
Q Consensus 206 ~ll~l~a~~~~al~~v~~e~~~k~~~~~-~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~a 283 (349)
.++.+++++++++..++.|--.++.++. ...+++. ...++....... ..++...+ .+...|+.+...+
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRti----Vi~~~l~~v~~~~g~~~~~~~------~~~k~~lflilSG 74 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTI----VILIFLLIVLLVTGNWQAGGE------IGPKSWLFLILSG 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHH----HHHHHHHHHHHhcCceecccc------cCcceehhhhHHH
Confidence 4678999999999999998777765541 1122222 222222222221 22221111 2333344333323
Q ss_pred ----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904 284 ----LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 284 ----~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~ 343 (349)
++..+..+.+|.-++.+..+.+..++++++++|++++||++|..+++|..+|.+|..+..
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 333444455566666666777889999999999999999999999999999999987654
No 45
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.49 E-value=5.8e-06 Score=79.44 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=91.0
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc-hhh
Q 018904 43 NWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVT-TANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLD-EVI 120 (349)
Q Consensus 43 ~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~-~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~-~l~ 120 (349)
++..+..++++.++.|+...++.|.... +|++. ...++......+.+.+... ..+.. +.......|. ..+
T Consensus 186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~l--~~~~~--~~~~~~~~~~~~~~ 257 (358)
T PLN00411 186 DWLIGGALLTIQGIFVSVSFILQAHIMS----EYPAAFTVSFLYTVCVSIVTSMIGL--VVEKN--NPSVWIIHFDITLI 257 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCcHhHHHHHHHHHHHHHHHHHHH--HHccC--CcccceeccchHHH
Confidence 3444667777788999988888765432 34332 3344444433332222221 11111 0011111111 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
.....++.-.+...++++++++++++.+++...+.|++++++++++++|+++..|++|.++.+.|+.++..+
T Consensus 258 ~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 258 TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 111122222346678999999999999999999999999999999999999999999999999999998754
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.47 E-value=1.1e-05 Score=75.58 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=63.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904 118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (349)
Q Consensus 118 ~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~ 191 (349)
..|..+. +++.+.+.+.+.|+.+.|++..+=+.....++.++++.+++|||++++.|.|..+.++|.+++..
T Consensus 51 ~~W~~G~--~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 51 PLWWIGL--LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHHH--HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 3445555 34678889999999999999999999999999999999999999999999999999999987653
No 47
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.47 E-value=5.6e-06 Score=77.45 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 125 (349)
.+.++.++..+.|+...+..|...+ ++++.... ...++..++..+... . ... . ...++.........
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~----~~~~~~~~-~~~~~~~~~l~~~~~--~-~~~--~---~~~~~~~~~~~l~l 214 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGA----EHGPATVA-IGSLIAALIFVPIGA--L-QAG--E---ALWHWSILPLGLAV 214 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----cCCchHHH-HHHHHHHHHHHHHHH--H-ccC--c---ccCCHHHHHHHHHH
Confidence 4777888889999999999887642 24454443 333444444444431 1 111 0 01122221111223
Q ss_pred HHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 126 AVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 126 ~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
|++ -.+...++++++++++++.++++..++|++.+++++++++|+++..||+|..+.+.|++.....
T Consensus 215 gv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 215 AILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 333 3567789999999999999999999999999999999999999999999999999999887543
No 48
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.45 E-value=1.4e-06 Score=81.76 Aligned_cols=142 Identities=8% Similarity=0.005 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ccc-----cccchh
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN-RLS-----TTLDEV 119 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~-~~~-----~~~~~l 119 (349)
.+.++.++..+.|+.+.+..|.... ++++++.+..+.......+..+|+.. ..+ +..... ... ......
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~l~p~~~--~~~-~~~~~~~~~~~~~~~~~~~~~ 219 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMT--IKSLDKTNLYAYISIMSLFLLSPPAF--ITE-GPPFLPHGFMQAISGVNVTKI 219 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHHHHHHHHH--HHc-chHHHHHHHHHhhcccCchHH
Confidence 4777788888999999888876543 13578888888888777777777652 111 100000 000 011111
Q ss_pred hh-hhHHHH-HHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 120 IV-YPIPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 120 ~~-~~i~~l-l~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
+. ....+. .+...|.+.|.+++++++.++++....+|++++++++++++|+++..|++|..+.+.|+.+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 220 YTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 11 223333 45567788889999999999999999999999999999999999999999999999999988654
No 49
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.44 E-value=7.9e-06 Score=78.43 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccC---CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CC----Cccc-cc
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAG---KYEYSVTTANFLVETLKCALSLAALARIWNHEGV-T-DD----NRLS-TT 115 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~---~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~-~-~~----~~~~-~~ 115 (349)
.+.++.++..+.++.+.+..|...++. ++++++.........+..++++|+... .+... . .. .... ..
T Consensus 194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~--~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLF--FEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHhhhcccccc
Confidence 477778888999999999988754321 124666666666667777777776531 11100 0 00 0000 01
Q ss_pred cch-hhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904 116 LDE-VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (349)
Q Consensus 116 ~~~-l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~ 190 (349)
+.. +......++.|..+|.+.|++++++++.++++...++|+++.++++++++|+++..|++|..+.+.|+.+..
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 111 123344566788999999999999999999999999999999999999999999999999999999998754
No 50
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.44 E-value=6.6e-06 Score=77.05 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 125 (349)
.+.++.++..+.|+...+..|...+ ++++.+..+. ...+...+... . .... . ...++.........
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~----~~~~~~~~~~---~~~~~l~~~~~--~-~~~~-~---~~~~~~~~~~l~~~ 221 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYAR----GKNGITLFFI---LTALALWIKYF--L-SPQP-A---MVFSLPAIIKLLLA 221 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC----CCCchhHHHH---HHHHHHHHHHH--H-hcCc-c---ccCCHHHHHHHHHH
Confidence 3677888899999999999887642 2344443221 11122222111 2 1110 1 11223333333344
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
++.-.+...++++++++++++..+++.++.|++.+++++++++|+++..||+|.++.+.|+.+....
T Consensus 222 ~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 222 AAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 4445668889999999999999999999999999999999999999999999999999999887543
No 51
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.39 E-value=9.5e-06 Score=75.85 Aligned_cols=136 Identities=13% Similarity=0.019 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 125 (349)
.+.++.++..+.|+...+..|.... + . +.........+...+..++. ..... ... ...+.+........
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~-~~~~~~~~~~i~~l 218 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPL---P-V-GMMAGAAEMLAAGVVLLIAS---LLSGE--RLT-ALPTLSGFLALGYL 218 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---C-c-chHHHHHHHHHHHHHHHHHH---HHcCC--ccc-ccCCHHHHHHHHHH
Confidence 4677777888899998888766432 1 1 23333444444444444443 21111 100 11122333233333
Q ss_pred HHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 126 AVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 126 ~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
+++ -.+...+++++++++++++.+++..+.|++.++++++++||+++..||.|..+.+.|+.+....
T Consensus 219 ~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 219 AVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 443 3567889999999999999999999999999999999999999999999999999999887543
No 52
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.38 E-value=0.00051 Score=65.26 Aligned_cols=170 Identities=11% Similarity=-0.037 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-cccchhhhh
Q 018904 44 WKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDEVIVY 122 (349)
Q Consensus 44 ~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~-~~~~~l~~~ 122 (349)
.-.+++.+++..+.+++..+-.|..++..-+.|.. ...++.+++.-.. ...+. .+.. ..-+. .+.+.+..-
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~-v~gi~~wl~~~~~-~g~~~--~~~f----~~~~~~~~~~~~~~~ 76 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWS-VGGIFSWLILPWL-IAALL--LPDF----WAYYSSFSGSTLLPV 76 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccccCCCchhHHHH-HHHHHHHHHHHHH-HHHHH--hhhH----HHHHHhcCHHHHHHH
Confidence 44678889999999999999988876543344433 2222333332110 01110 0000 00011 234555566
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCC---c----hHHHHHHHHHHhhhhhccc---
Q 018904 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKL---S----EIQWAAFILLCCGCTTAQL--- 191 (349)
Q Consensus 123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekl---s----~~qw~gl~l~~~Gv~lv~~--- 191 (349)
.+.|++-.+.|..++.+.+++..+...-+ ..++.+..+++..++++|=- + ..-.+|+++.++|+++...
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77888899999999999999999965544 58899999999999988532 3 3356677888889988876
Q ss_pred -cCCCC----cccccchhHHHHHHHHHHHHHHHHH
Q 018904 192 -NSNSD----RVLQTPLQGWIMAIVMALLSGFAGV 221 (349)
Q Consensus 192 -~~~~~----~~~~~~~~G~ll~l~a~~~~al~~v 221 (349)
.+..+ ....+.-.|+++.+++.+.+++++.
T Consensus 157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred hcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 33211 1123567899999999999999883
No 53
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.35 E-value=3.5e-06 Score=78.29 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhh
Q 018904 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (349)
Q Consensus 126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~l 188 (349)
++...+.+.++++++++.|++..+.+.++.|++..+++++++||+++..||.|..+.++|+.+
T Consensus 218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 344567888999999999999999999999999999999999999999999999999999875
No 54
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.29 E-value=4.7e-05 Score=62.29 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHH
Q 018904 204 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHA 283 (349)
Q Consensus 204 ~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a 283 (349)
.|+++++.+.++.+.+.+..|+-+++.++.+.. . .. ........ + ...+.++.+...+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~---~----~~--~~~~~~~~-~------------p~~~i~lgl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHA---W----DF--IAALLAFG-L------------ALRAVLLGLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccch---h----HH--HHHHHHHh-c------------cHHHHHHHHHHHH
Confidence 478889999999999999999877765431110 1 00 01110100 0 0114555555556
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--HcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904 284 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVF--LFGFHLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 284 ~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~--lfge~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
+...+..++++..+........+....+..+.++. +|||++|+.+++|.++|+.|+++.++++
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 66667778888877666665555666667777774 8999999999999999999999887643
No 55
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.18 E-value=0.0001 Score=69.10 Aligned_cols=144 Identities=11% Similarity=0.009 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc-cccccchhhhhhH
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNR-LSTTLDEVIVYPI 124 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~i 124 (349)
.+-++.++..+.|+...++.|...+. ..+.......+....+..+....... ..+........ ...++..+.....
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASL--ILDGSATMIHSLVTIDMTTILSLMY 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHH--HhcCchhhhhhhccCCHHHHHHHHH
Confidence 46677778889999999998765321 11111222233332232221111110 11111000000 0112233333333
Q ss_pred HHHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 125 PAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 125 ~~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
.+++ -.+...+++.+++++++++.+.+..+.|++.+++++++++|+++..||+|..+.++|+.+...+
T Consensus 220 l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 220 LAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 3333 3467778999999999999999999999999999999999999999999999999999887654
No 56
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.11 E-value=6.9e-05 Score=70.48 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 125 (349)
.+++++++..+..+.+.+.-+...+ +++.++.+.++...++.+++..+........+..+..+....+..-.....+.
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~--~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~ 231 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFK--KYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF 231 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence 3888888888999999888765443 35667899999999999887776653200111110111111122222334444
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
++.........+.-.+..++.+.+++..++-+++.+++..++++++++.||.|+++.+.|..+-...
T Consensus 232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 5555666667777789999999999999999999999999999999999999999999999886543
No 57
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.09 E-value=5.3e-05 Score=70.80 Aligned_cols=135 Identities=11% Similarity=0.031 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhh
Q 018904 43 NWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVY 122 (349)
Q Consensus 43 ~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (349)
+.+++.+..++..+.++...+..|... ++|.+.+|....--++.+..+.. .+++.+ +. ..+..+..
T Consensus 149 ~~~~Gi~~~l~sg~~y~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~ 214 (290)
T TIGR00776 149 NFKKGILLLLMSTIGYLVYVVVAKAFG------VDGLSVLLPQAIGMVIGGIIFNL-GHILAK--PL-----KKYAILLN 214 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcC------CCcceehhHHHHHHHHHHHHHHH-HHhccc--ch-----HHHHHHHH
Confidence 335677777888888999999988653 45555544333321222222211 021111 11 11233344
Q ss_pred hHHHHHHHHHHHHHHHHHh-cCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHH----HHHHHHHhhhhhccc
Q 018904 123 PIPAVLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQL 191 (349)
Q Consensus 123 ~i~~ll~~~~n~l~~~al~-~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw----~gl~l~~~Gv~lv~~ 191 (349)
.+.|++..+.+.+++.+.+ +.+++.+.++.+..|+..++++++++||+.+++|+ +|.++.+.|+.++..
T Consensus 215 ~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 215 ILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 5577888889999999999 99999999999999999999999999999999999 999999999988753
No 58
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.05 E-value=4.2e-05 Score=62.57 Aligned_cols=67 Identities=12% Similarity=0.022 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHH--HhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRI--ILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (349)
Q Consensus 127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~--~Lkekls~~qw~gl~l~~~Gv~lv~~~~ 193 (349)
++|.++..++.++++..|++.+.-+.+..+..+++.++. ++||+++..||+|+.+.++|+.++..++
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 348889999999999999999999999999889888885 8999999999999999999999987543
No 59
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.04 E-value=0.00027 Score=66.24 Aligned_cols=137 Identities=13% Similarity=0.162 Sum_probs=87.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-chhhhhhccccccChHHHH--H
Q 018904 201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQ-DFDAVMNKGFFHGYSFITV--L 277 (349)
Q Consensus 201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--l 277 (349)
+...|++++++++++|+...++.|.. .+.+ +....... ..++.++..+..... +.++... .........+ .
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~--~~~~~~~R-~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP--ADEILTHR-VIWSFFFMVVLMSICRQWSYLKT--LIQTPQKIFMLAV 78 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC--HHHHHHHH-HHHHHHHHHHHHHHHccHHHHHH--HHcCHHHHHHHHH
Confidence 45689999999999999999999653 3322 33333333 334443333322221 1111100 0101111111 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904 278 MILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 278 ~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~ 343 (349)
..+..+....+..+.+++.+....+...+..|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 223334445566667788888888888899999999999999999999999999999999988653
No 60
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.90 E-value=0.00066 Score=62.05 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHH-hchhhh-hhccccccChHHHHH--HH
Q 018904 204 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI-QDFDAV-MNKGFFHGYSFITVL--MI 279 (349)
Q Consensus 204 ~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l--~i 279 (349)
.|.+++++++++|+...+..|. ..+.+ .....+.=..++.++..+.... .+++.. ............... .-
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~---~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP---ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC---HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 4888999999999999999986 33332 2222222233344333322211 111110 000000000111111 11
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904 280 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 280 ~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~ 342 (349)
+..+....+..+.+++.+........++.|++++++++++++|+++..+++|.++.+.|+.+.
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 123334455566678877777777788999999999999999999999999999999998754
No 61
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.84 E-value=0.00017 Score=58.12 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
.+.-++|.++..+...+++++|.+.+-.+ .....+.+++.+.+++||+++..|++|+.+.++|++.+...
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 34446688899999999999999965555 58999999999999999999999999999999999988654
No 62
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.80 E-value=0.0002 Score=56.62 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChH-HHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904 122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (349)
Q Consensus 122 ~~i~~ll~~~~n~l~~~al~~~~~~-~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~ 190 (349)
..+.-++|.++..+.-.+++++|.+ .|++-.....+.+++.+.+++||++++.|++|+.+.+.|++.+.
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4444456788999999999999998 56666789999999999999999999999999999999998763
No 63
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.80 E-value=0.00024 Score=55.81 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChH-HHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904 123 PIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (349)
Q Consensus 123 ~i~~ll~~~~n~l~~~al~~~~~~-~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~ 191 (349)
.+.-++|..+..+...+++.+|.+ .|++-.....+.+++.+++++||++++.|++|+.+.++|++.+..
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 334456888999999999999988 566666799999999999999999999999999999999998743
No 64
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00022 Score=55.71 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChH-HHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904 122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (349)
Q Consensus 122 ~~i~~ll~~~~n~l~~~al~~~~~~-~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~ 191 (349)
..+.-+++.++..+.-.+++++|.+ .|++-.....+.+++.+++++||+++..|++++.+.++|++.+..
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3444456788889999999999988 567777999999999999999999999999999999999988754
No 65
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.73 E-value=0.0018 Score=59.53 Aligned_cols=133 Identities=20% Similarity=0.143 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANF-LVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 124 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf-~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i 124 (349)
.+.++.+...+.++.+.+..|... +.++....+ ...........+.. .... + ....+++......
T Consensus 154 ~g~~~~l~a~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~-~~~~~~~~~~~~~ 219 (292)
T COG0697 154 LGLLLALAAALLWALYTALVKRLS-----RLGPVTLALLLQLLLALLLLLLFF---LSGF-----G-APILSRAWLLLLY 219 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHH---hccc-----c-ccCCHHHHHHHHH
Confidence 456677778888888887777553 233344443 22121122222222 1111 0 1123344445555
Q ss_pred HHHHHH-HHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 125 PAVLYL-VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 125 ~~ll~~-~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
.+++.. +...+++.+++..+++..+.+..+.|++..++++++++|+.+..|+.|..+.+.|+.+....
T Consensus 220 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 220 LGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 555545 58899999999999999999999999999999999999999999999999999999988653
No 66
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.72 E-value=0.0003 Score=55.82 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 124 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 124 i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
..-++|.++..+...+++.+|.+.+-.+ .....+.+++.+++++||++++.|+.|+.+.++|++.+...
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3345688888999999999999965555 67899999999999999999999999999999999998653
No 67
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.69 E-value=0.0011 Score=52.83 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904 283 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 283 a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~ 343 (349)
++...+..++++..+........+++++++.++|+++|||++|..+++|.++++.|+.+..
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3344556677777766655555568899999999999999999999999999999987654
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.64 E-value=0.0012 Score=60.55 Aligned_cols=124 Identities=13% Similarity=0.029 Sum_probs=90.9
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhh
Q 018904 41 LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI 120 (349)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 120 (349)
..+.++..+.+++.++.+....++.|+.. .++.+. ++-+.+..++...++. ...+ +..+.+..|
T Consensus 133 ~~~~~kgi~~Ll~stigy~~Y~~~~~~~~------~~~~~~-~lPqaiGm~i~a~i~~--~~~~---~~~~~k~~~---- 196 (269)
T PF06800_consen 133 KSNMKKGILALLISTIGYWIYSVIPKAFH------VSGWSA-FLPQAIGMLIGAFIFN--LFSK---KPFFEKKSW---- 196 (269)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcC------CChhHh-HHHHHHHHHHHHHHHh--hccc---ccccccchH----
Confidence 34556778888888888888888888854 344333 4456666665555442 1111 111112334
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHH
Q 018904 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFI 180 (349)
Q Consensus 121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~ 180 (349)
.-.+.|+++.+.|.+++++.+....++.-.+.|+.++..++-+.++|||+=+++++...+
T Consensus 197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 447789999999999999999999999999999999999999999999999999886544
No 69
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.56 E-value=0.0025 Score=50.71 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904 284 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 284 ~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
.......+..++.++ .......+.|+++.++|+++|+|+++...++|.+++..|+.+...++
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 444556677788775 55566778999999999999999999999999999999998776554
No 70
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.00038 Score=64.36 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
+.+.+.....|.|+.+-|++..+-+.++..+..++++..++|||++..-.+|..+.++|-.++...
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 446889999999999999999999999999999999999999999999999999999999876543
No 71
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.40 E-value=0.00038 Score=65.36 Aligned_cols=142 Identities=12% Similarity=0.093 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCccccccc-hhhhhh
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL-AALARIWNHEGVTDDNRLSTTLD-EVIVYP 123 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l-~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~ 123 (349)
.+.+...+.++..+.+-|+.|......+++.++.+......-+.+++.+ |+.. ..++.....-....|. +...+.
T Consensus 163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~---~~~~~~~~~~~~~~~~~~~~~~~ 239 (316)
T KOG1441|consen 163 FGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLD---YVEGNKFVGFLTAPWFVTFLILL 239 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHh---hhcccceeeeeccccchhhHHHH
Confidence 4666677788889999999887665445778888888777666666666 7652 2222111000111121 233445
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (349)
Q Consensus 124 i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~ 190 (349)
.-++++...|...|..+.+++|-++++....|=+++...++++++++++..|.+|..+.++|+.+-.
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 5558889999999999999999999999999999999999999999999999999999999998764
No 72
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.38 E-value=0.0023 Score=51.55 Aligned_cols=63 Identities=27% Similarity=0.299 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 283 ALSGIAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 283 a~~g~~~~~~~k~~~~i~~-~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
++.-.+++.++|+.+-... ...+....+.++++|+++|||++|+.+++|.++|+.|+...+..
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 4444556667777542222 22245677889999999999999999999999999999877654
No 73
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.32 E-value=0.006 Score=54.78 Aligned_cols=128 Identities=16% Similarity=0.069 Sum_probs=84.3
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHH-
Q 018904 50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL- 128 (349)
Q Consensus 50 ~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll- 128 (349)
+....-.+|+...+..|..-+ .-+-.+-+-....+..++.+|+- ....+. .+ .++.-+..-...|++
T Consensus 152 ~Al~AG~~Wa~YIv~G~r~g~----~~~g~~g~a~gm~vAaviv~Pig---~~~ag~----~l-~~p~ll~laLgvavlS 219 (292)
T COG5006 152 LALGAGACWALYIVLGQRAGR----AEHGTAGVAVGMLVAALIVLPIG---AAQAGP----AL-FSPSLLPLALGVAVLS 219 (292)
T ss_pred HHHHHhHHHHHHHHHcchhcc----cCCCchHHHHHHHHHHHHHhhhh---hhhcch----hh-cChHHHHHHHHHHHHh
Confidence 344556778887777654321 11224445556666777777776 222221 11 122222111222222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 129 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 129 ~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
-.+-..+..++++.+|..++.++.++.|.+-++..+++|+|++|..||+++....++.+=.
T Consensus 220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 2345567889999999999999999999999999999999999999999998887766533
No 74
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.30 E-value=0.0011 Score=51.08 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhcCChHHH-HHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 018904 127 VLYLVKNLLQYYIFAYVDAPGY-QILKNLNIISTGVLYRIILKKKLSEIQWAAFIL 181 (349)
Q Consensus 127 ll~~~~n~l~~~al~~~~~~~~-~ll~~~~pl~talls~~~Lkekls~~qw~gl~l 181 (349)
.+|..+..+...+++++|.+.+ .+......+.+++.+.+++||++|..||.|+.+
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 4688899999999999999965 666689999999999999999999999999875
No 75
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.20 E-value=0.0048 Score=48.94 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 287 IAVSMVMKYADNIVKVYS--TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 287 ~~~~~~~k~~~~i~~~~~--~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
.+++.++|..+ +...++ +.+..+.++++|+++|||++|+.+++|.++++.|+.+.+..
T Consensus 45 ~~l~~al~~ip-l~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 45 WLLAQTLAYIP-TGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34455565544 222233 34577888999999999999999999999999999987764
No 76
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.13 E-value=0.0046 Score=58.04 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=80.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHH
Q 018904 201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL 280 (349)
Q Consensus 201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 280 (349)
+...|.++.+.++++.+.+..++||-.++.+..+..... .... .. -++..|..++
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~----------~~~~-~l--------------~~~~W~~G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS----------GGRS-YL--------------RRPLWWIGLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc----------hhhH-HH--------------hhHHHHHHHH
Confidence 567899999999999999999999876654320110000 0000 00 0122233333
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904 281 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 281 ~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~ 342 (349)
..+++...-...+.+++.....+...++.+++.+++..+++|+++...++|.++++.|..+.
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li 120 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI 120 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence 33444443344556678888888888999999999999999999999999999999998643
No 77
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.04 E-value=0.022 Score=54.12 Aligned_cols=141 Identities=12% Similarity=-0.011 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904 45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 124 (349)
Q Consensus 45 ~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i 124 (349)
-.+-++++...++++.+.++-+..-+ +.+..+..-+-.+..++++.+.... -+.. +......+++....+..
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~----~~~~~~~lg~~Glfg~ii~~iq~~i--le~~--~i~~~~w~~~~~~~~v~ 238 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVK----KAPRVEFLGMLGLFGFIISGIQLAI--LERS--GIESIHWTSQVIGLLVG 238 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHHHHHHHHh--eehh--hhhccCCChhhHHHHHH
Confidence 45667888888899999888776432 3456666666666777766655421 1111 11122222332222222
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (349)
Q Consensus 125 ~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~ 193 (349)
-+++.+....+.-+.+++.+|+..++=.-+..+...++..+++|+++++..++|.++..+|+++....+
T Consensus 239 ~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 239 YALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 222233344455567888999988888889999999999999999999999999999999999986543
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0083 Score=46.89 Aligned_cols=65 Identities=29% Similarity=0.262 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 281 NHALSGIAVSMVMKYADNI-VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 281 ~~a~~g~~~~~~~k~~~~i-~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
..++.-.+.+..+|+.+-- .-..-+-...+.+++.|+++|||+++...++|.++++.|+..-+..
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 3344445667777775422 2233355678899999999999999999999999999999876543
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.96 E-value=0.011 Score=46.48 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 283 ALSGIAVSMVMKYADNI-VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 283 a~~g~~~~~~~k~~~~i-~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
++...+++..+|..+-. .-+.-+....+.++++|+++|||++|+.+++|..+++.|+..-+..
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 33444556666664422 2233345677889999999999999999999999999999876543
No 80
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.83 E-value=0.0037 Score=49.65 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
.|.+|=++|......+|+.+...|.+.+.-+ +++.-++|++.++++.+|..+++.|+|+.+.+.|+.++
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 3667777899999999999999999977666 69999999999988888888999999999999999765
No 81
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.79 E-value=0.018 Score=45.56 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904 283 ALSGIAVSMVMKYADNI-VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 283 a~~g~~~~~~~k~~~~i-~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~ 343 (349)
++...+++.++|+.+-. .-..-+....+.+++.|+++|||++|+.+++|.++++.|+..-+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34445566666665422 12233456678899999999999999999999999999998754
No 82
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.43 E-value=0.029 Score=51.74 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHH-HHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---ccccccch
Q 018904 43 NWKRKSVVTLALTVLTSSQAIL-IVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN---RLSTTLDE 118 (349)
Q Consensus 43 ~~~~~~~~l~~~~~~~s~~~i~-~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~---~~~~~~~~ 118 (349)
+...++.++..-.++.+..... -+.-+ ++..++...++-.++...+.....+. .......... +-+.-++|
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~---~~k~s~~~mM~~vNLf~~i~~~~~li--~qg~~~~av~F~~~hp~~~~D 243 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFK---KYKVSSLHMMFGVNLFSAILNGTYLI--LQGHLLPAVSFIKEHPDVAFD 243 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhc---cCCccHhHHHHHHHHHHHHHHHHhhh--cCCCCchHHHHHHcChhHHHH
Confidence 3356777777655554443222 12222 46778899999998888777665541 1111111100 01122456
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhh
Q 018904 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (349)
Q Consensus 119 l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~l 188 (349)
+..+. .+.++...+.|+-++.-.+-+.+.+.-+.=++..+++.+.+++++++.||.|+.+.|.|...
T Consensus 244 i~l~s---~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 244 ILLYS---TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHH---HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 54444 55577888888899999999999999999999999999999999999999999998888765
No 83
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.00045 Score=61.55 Aligned_cols=263 Identities=13% Similarity=0.162 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (349)
Q Consensus 48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l 127 (349)
++..++-++.|++.+.+. ..-|+.++...--+ -+-++++++... +-.. +. .+++.+..-.+.|.
T Consensus 4 ~liaL~P~l~WGsip~v~---~k~GG~p~qQ~lGt---T~GALifaiiv~---~~~~---p~----~T~~~~iv~~isG~ 67 (288)
T COG4975 4 LLIALLPALGWGSIPLVA---NKFGGKPYQQTLGT---TLGALIFAIIVF---LFVS---PE----LTLTIFIVGFISGA 67 (288)
T ss_pred HHHHHHHHHHhcccceee---eecCCChhHhhhhc---cHHHHHHHHHHh---eeec---Cc----cchhhHHHHHHhhh
Confidence 445556778898887763 22334444443222 222333444333 1111 11 23555666677788
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHh-hhHHHHHHHHHHHHhcCCCchHHH----HHHHHHHhhhhhccccCCCCc---cc
Q 018904 128 LYLVKNLLQYYIFAYVDAPGYQILK-NLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQLNSNSDR---VL 199 (349)
Q Consensus 128 l~~~~n~l~~~al~~~~~~~~~ll~-~~~pl~talls~~~Lkekls~~qw----~gl~l~~~Gv~lv~~~~~~~~---~~ 199 (349)
+.......+|-|.+++..+.+.=+. .++.+-+.+++++.++|--+..|. .++++..+|+.+-..++..++ ..
T Consensus 68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~ 147 (288)
T COG4975 68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENP 147 (288)
T ss_pred HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccCh
Confidence 8888999999999999988776554 788889999999999998888775 467777888877766543221 12
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHH
Q 018904 200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI 279 (349)
Q Consensus 200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 279 (349)
++.-.|+...+.+.+.+-.+.|..+...- +.-+.+..|.. |+++..+..-..+.+.. .+-.+|..+
T Consensus 148 ~n~kkgi~~L~iSt~GYv~yvvl~~~f~v-~g~saiLPqAi-----GMv~~ali~~~~~~~~~--------~~K~t~~ni 213 (288)
T COG4975 148 SNLKKGIVILLISTLGYVGYVVLFQLFDV-DGLSAILPQAI-----GMVIGALILGFFKMEKR--------FNKYTWLNI 213 (288)
T ss_pred HhhhhheeeeeeeccceeeeEeeeccccc-cchhhhhHHHH-----HHHHHHHHHhhcccccc--------hHHHHHHHH
Confidence 23457877777788888777777764421 11113333332 44444433222111111 122344433
Q ss_pred H---HHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHcCCcchHHH----HHHHHHHHHHhhh
Q 018904 280 L---NHALSGIAVSMVMKYADNIVKVY-STSVAMLLTAVVSVFLFGFHLSLAF----FLGSIVVSVSVYL 341 (349)
Q Consensus 280 ~---~~a~~g~~~~~~~k~~~~i~~~~-~~~~~~v~t~l~s~~lfge~lt~~~----~lG~~lV~~gv~l 341 (349)
. .-+++.+.+-+.-...+ +..++ .+....+++++-|+++++|+=|..+ ++|..+++.|..+
T Consensus 214 i~G~~Wa~GNl~ml~a~~~~G-vAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 214 IPGLIWAIGNLFMLLAAQKVG-VATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred hhHHHHHhhHHHHHHhhhhhc-eeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 2 22334443322221111 11111 1234557889999999999988755 6777777777554
No 84
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.27 E-value=0.069 Score=47.64 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhh
Q 018904 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (349)
Q Consensus 123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~l 188 (349)
....++.++...+..+.++|.++.+.++...+.++++++++.++++|+++..||.|..+.+.|+.+
T Consensus 156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 334455677888899999999999999999999999999999999999999999999999988753
No 85
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.16 E-value=0.27 Score=45.30 Aligned_cols=130 Identities=13% Similarity=0.032 Sum_probs=92.9
Q ss_pred HHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHH
Q 018904 53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK 132 (349)
Q Consensus 53 ~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~ 132 (349)
.+++.++..+.+-|..+ .++.+-..+..+.-+..++..+. +-....+ .-...+......+...|..-++-
T Consensus 155 ~la~sf~~Ygl~RK~~~------v~a~~g~~lE~l~l~p~al~yl~--~l~~~~~--~~~~~~~~~~~LLv~aG~vTavp 224 (293)
T COG2962 155 ALALSFGLYGLLRKKLK------VDALTGLTLETLLLLPVALIYLL--FLADSGQ--FLQQNANSLWLLLVLAGLVTAVP 224 (293)
T ss_pred HHHHHHHHHHHHHHhcC------CchHHhHHHHHHHHhHHHHHHHH--HHhcCch--hhhcCCchHHHHHHHhhHHHHHH
Confidence 45666777777777764 34555545444444445555442 2221110 00112345556677777777888
Q ss_pred HHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 133 n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
-.++-.|-+.+|.++..++.+..|...-+++.+++||+++..|+.+.+..-+|+++...+
T Consensus 225 L~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 225 LLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998887653
No 86
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.05 E-value=0.65 Score=38.37 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHH
Q 018904 206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS 285 (349)
Q Consensus 206 ~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~ 285 (349)
.++.+.+..+-++++..+-++.++..+ .+..++.....|.+...+.....+..+.. .....+++.|+.=+..++.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs--~~~as~i~~~~G~i~~~i~~~~~~~~~~~---~~~~~p~w~~lGG~lG~~~ 77 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGS--PLVASFISFGVGFILLLIILLITGRPSLA---SLSSVPWWAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHHHHhcccccc---hhccCChHHhccHHHHHHH
Confidence 456677778888888888888777542 34444444455655555544433321111 1223345555432222222
Q ss_pred HHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHH-Hc---CCcchHHHHHHHHHHHHHhhh
Q 018904 286 GIAVSMVMKYADNIVKVYST-SVAMLLTAVVSVF-LF---GFHLSLAFFLGSIVVSVSVYL 341 (349)
Q Consensus 286 g~~~~~~~k~~~~i~~~~~~-~~~~v~t~l~s~~-lf---ge~lt~~~~lG~~lV~~gv~l 341 (349)
-....+.....+........ .-+.+.+.+++.+ +| .+++++..++|.++++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 23334444444433332222 2234566666765 33 578999999999999999864
No 87
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.65 E-value=0.5 Score=45.12 Aligned_cols=76 Identities=9% Similarity=0.158 Sum_probs=57.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHH---Hh-hhHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHhh
Q 018904 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQI---LK-NLNIISTGVLYRIILKKKLS------EIQWAAFILLCCG 185 (349)
Q Consensus 116 ~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~l---l~-~~~pl~talls~~~Lkekls------~~qw~gl~l~~~G 185 (349)
+|+.....+.|++...+|.+++.+-+.++.....+ +. |+..++.++-.. ++||+=+ +.-++|+++.++|
T Consensus 257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g 335 (345)
T PRK13499 257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA 335 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence 57777778999999999999999998875543334 55 777677776666 6999877 5557777888888
Q ss_pred hhhcccc
Q 018904 186 CTTAQLN 192 (349)
Q Consensus 186 v~lv~~~ 192 (349)
.+++...
T Consensus 336 ~~lig~~ 342 (345)
T PRK13499 336 ANIVGLG 342 (345)
T ss_pred HHHHhhc
Confidence 8877653
No 88
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.31 E-value=0.053 Score=43.08 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHHHHHHH
Q 018904 211 VMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVS 290 (349)
Q Consensus 211 ~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~g~~~~ 290 (349)
+-+++|++.+-+.||-.++.+....-.+ .. -.... . +. ++..+...+.+-.+.....
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~~-~~---~~~~~----L-l~--------------n~~y~ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASLQ-LL---QEIKF----L-LL--------------NPKYIIPFLLNQSGSVLFF 59 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchHH-HH---HHHHH----H-HH--------------hHHHHHHHHHHHHHHHHHH
Confidence 3467899999999987776543111111 10 01101 1 10 2223334444555555555
Q ss_pred HHHHHhhhHHHH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 018904 291 MVMKYADNIVKV-YSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL 341 (349)
Q Consensus 291 ~~~k~~~~i~~~-~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l 341 (349)
+.+...|-.... .+++++-++|++.++++.+|..+...++|+++|+.|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 666666644444 446888999999999988888899999999999999865
No 89
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.31 E-value=0.098 Score=40.09 Aligned_cols=51 Identities=29% Similarity=0.333 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 018904 285 SGIAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV 335 (349)
Q Consensus 285 ~g~~~~~~~k~~~~i~~-~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV 335 (349)
.-.+.+..+|+.+-... ...+....+.+.+.|+++|||++|+.+++|.++|
T Consensus 42 s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 42 SFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33455666666553332 2234567788999999999999999999999876
No 90
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=94.81 E-value=0.063 Score=48.78 Aligned_cols=131 Identities=11% Similarity=0.124 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (349)
Q Consensus 48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l 127 (349)
.+..+..+++.++-.|+.|+.-++.++-.+.+--.. +.++.++... ...+ .-.+.+.+|+.+.+...|+
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~----i~lV~s~I~~----~~ig---~~~lP~cgkdr~l~~~lGv 261 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSL----ITLVVSLIGC----ASIG---AVQLPHCGKDRWLFVNLGV 261 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHH----HHHHHHHHHH----hhcc---ceecCccccceEEEEEehh
Confidence 445556777777778888887333222222221112 2222222221 1111 1234456777778888898
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 128 l~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
+.+++..+.-.++|.=-++-.++...+..++..+.-.+++||-.+++.|.|.++.+...+.+
T Consensus 262 fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 262 FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 88999999999999999999999999999999999999999999999999887665555444
No 91
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.66 E-value=1.9 Score=35.54 Aligned_cols=104 Identities=16% Similarity=0.051 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHH-
Q 018904 78 VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI- 156 (349)
Q Consensus 78 ~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~p- 156 (349)
|....++.....++++..+.. ..++. ...+.+ +-.+.+...|++-...-.+..+....+.++...++.-+.-
T Consensus 30 ~~~as~i~~~~G~i~~~i~~~--~~~~~--~~~~~~---~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl 102 (138)
T PF04657_consen 30 PLVASFISFGVGFILLLIILL--ITGRP--SLASLS---SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQL 102 (138)
T ss_pred cHHHHHHHHHHHHHHHHHHHH--Hhccc--ccchhc---cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 556666666666665555442 22221 111121 1112233355665666667777889999997777765544
Q ss_pred HHHHHHHHH----HhcCCCchHHHHHHHHHHhhhhh
Q 018904 157 ISTGVLYRI----ILKKKLSEIQWAAFILLCCGCTT 188 (349)
Q Consensus 157 l~talls~~----~Lkekls~~qw~gl~l~~~Gv~l 188 (349)
+...++-.+ .-|+++++.|.+|+.+..+|+.+
T Consensus 103 ~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 103 IASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 444445554 46899999999999999999864
No 92
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=94.24 E-value=0.33 Score=44.18 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904 283 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 283 a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
++...+....+++.|+..-.......+++|+++++++++.+++..||++..+...|+.+...++
T Consensus 28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 3444556677888888888888888999999999999999999999999999999998876543
No 93
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.92 E-value=1.6 Score=41.68 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=97.4
Q ss_pred chhhhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Q 018904 39 SELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANF-LVETLKCALSLAALARIWNHEGVTDDNRLSTTLD 117 (349)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf-~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~ 117 (349)
.+.++-..+.++.++.+++++....+.|.-..+.+.+.+ ....| +..++.+++..|.+.. ...-+ .++-.+.++.
T Consensus 240 ~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvd-i~lffGfvGLfnllllwP~l~i-L~~~~-~e~F~lP~~~- 315 (416)
T KOG2765|consen 240 LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVD-IQLFFGFVGLFNLLLLWPPLII-LDFFG-EERFELPSST- 315 (416)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-HHHHHHHHHHHHHHHHhHHHHH-HHHhc-cCcccCCCCc-
Confidence 334444567788888889999998888764332223333 22222 3334445555543321 11111 1211122222
Q ss_pred hhhhhhHHHHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904 118 EVIVYPIPAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (349)
Q Consensus 118 ~l~~~~i~~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~ 193 (349)
......+.++. -.++..++-.|.-.+++-+.++-...++...++.-.++-++++|+.+.+|-+..++|.+++..+.
T Consensus 316 q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 316 QFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred eeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 22222333333 46799999999999999999999999999988888888899999999999999999999887653
No 94
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.20 E-value=0.0086 Score=53.59 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=84.4
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhh
Q 018904 41 LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI 120 (349)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 120 (349)
..|.+++...++...+.+....++.+.-. ++ ....++-..+..+++...+ -..++ +.. ..|+.+
T Consensus 147 ~~n~kkgi~~L~iSt~GYv~yvvl~~~f~------v~-g~saiLPqAiGMv~~ali~---~~~~~--~~~----~~K~t~ 210 (288)
T COG4975 147 PSNLKKGIVILLISTLGYVGYVVLFQLFD------VD-GLSAILPQAIGMVIGALIL---GFFKM--EKR----FNKYTW 210 (288)
T ss_pred hHhhhhheeeeeeeccceeeeEeeecccc------cc-chhhhhHHHHHHHHHHHHH---hhccc--ccc----hHHHHH
Confidence 33444554444445555555554444432 22 2223444556666666555 22221 111 235556
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 018904 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFIL 181 (349)
Q Consensus 121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l 181 (349)
.-.+||+.....|..+++|-+....++.--++|+..+...+-..++||||=++++|..+..
T Consensus 211 ~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~i 271 (288)
T COG4975 211 LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVII 271 (288)
T ss_pred HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhh
Confidence 6789999999999999999999999999999999999999999999999999999876543
No 95
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.06 E-value=0.17 Score=45.24 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 125 ~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
.|+.-.+...+.|.-..+..+-+-+++..+.-.||.+.++++++..++.+||+|-.+.|.|...=
T Consensus 247 ~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 247 LAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 34444667778888888999999999999999999999999999999999999999999988653
No 96
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=92.29 E-value=0.66 Score=41.22 Aligned_cols=112 Identities=9% Similarity=0.093 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccc--cchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHh
Q 018904 75 EYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT--LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILK 152 (349)
Q Consensus 75 ~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~--~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~ 152 (349)
++-.+..+|...++.+.+.+.+-+ .-++. .+ ..+..+ -..+..+.+.|++-..-..+.-+-.+-++.++++++.
T Consensus 182 Nf~d~dtmfYnNllslPiL~~~s~--~~edw-s~-~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvG 257 (309)
T COG5070 182 NFKDFDTMFYNNLLSLPILLSFSF--LFEDW-SP-GNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVG 257 (309)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHH--HhccC-Cc-chhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHH
Confidence 344577889999987665554432 12222 11 111112 2344567788877767777777788889999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904 153 NLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (349)
Q Consensus 153 ~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~ 190 (349)
+++-...++-...+++|..+.....++++++...++-.
T Consensus 258 ALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa 295 (309)
T COG5070 258 ALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred HhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987766643
No 97
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=1.2 Score=41.60 Aligned_cols=141 Identities=11% Similarity=-0.039 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc---chhhhh
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTL---DEVIVY 122 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~---~~l~~~ 122 (349)
++|..+..-.+..+...+.+|..-.. .+.+....++...++.+.......+. ..+.. +......+| .-+..+
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~--~~l~~~~lv~yNnl~~L~~l~~~~~~-~ge~~--~l~~~~~~~~~~~~~~~~ 231 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDS--ANLNKFGLVFYNNLLSLPPLLILSFI-TGELD--ALSLNFDNWSDSSVLVVM 231 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc--ccccceeEEeehhHHHHHHHHHHHHH-hcchH--HHHhhcccccchhHHHHH
Confidence 36777777777777777777765332 23455667777777766554443321 11100 000000112 223456
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (349)
Q Consensus 123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~ 191 (349)
.+.+++-++-+.+.++..+..++.++++....+.+.+.+-..++.+++.++....|+.++++|-++-+.
T Consensus 232 ~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 232 LLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 777777888999999999999999999999888999999889999999999999999999999887654
No 98
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=90.70 E-value=5.7 Score=37.71 Aligned_cols=133 Identities=14% Similarity=0.249 Sum_probs=73.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH--HHHHHHHHHHH---HHHhchhhhhhccccccChH-H
Q 018904 201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWL--YVFGMAFNAVA---IVIQDFDAVMNKGFFHGYSF-I 274 (349)
Q Consensus 201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~ 274 (349)
....|+++..+++++++...+=.||. |+-+ |+ +.|+ .+++.++.... ..++|..++.. ..+. .
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws----WE-s~Wlv~gi~swli~P~~~a~l~ip~~~~i~~-----~~~~~~ 72 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS----WE-SYWLVQGIFSWLIVPWLWALLAIPDFFSIYS-----ATPAST 72 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc----HH-HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH-----hCChhH
Confidence 46789999999999999888877765 4432 22 2222 23333333221 11233322211 1111 1
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHhhhhc
Q 018904 275 TVLMI---LNHALSGIAVSMVMKYAD-NIVKVYSTSVAMLLTAVVSVFLFG-------FHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 275 ~~l~i---~~~a~~g~~~~~~~k~~~-~i~~~~~~~~~~v~t~l~s~~lfg-------e~lt~~~~lG~~lV~~gv~l~~ 343 (349)
.+... +.-+++++..+..+||.+ +...+.+.-+..++.+++--++.| ++-....++|.++++.|+.+..
T Consensus 73 l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g 152 (344)
T PF06379_consen 73 LFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICG 152 (344)
T ss_pred HHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHh
Confidence 11112 234678888888899975 223334444455566666444433 2233467899999999988765
Q ss_pred C
Q 018904 344 A 344 (349)
Q Consensus 344 ~ 344 (349)
+
T Consensus 153 ~ 153 (344)
T PF06379_consen 153 K 153 (344)
T ss_pred H
Confidence 3
No 99
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.09 E-value=0.21 Score=46.66 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=79.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHH
Q 018904 201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL 280 (349)
Q Consensus 201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 280 (349)
+...|.++.+.++++-+.+-+..||-.++... . -..+.+. ..+++ ..+..|..++
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-----------------~----~~ra~~g--g~~yl--~~~~Ww~G~l 72 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-----------------S----GLRAGEG--GYGYL--KEPLWWAGML 72 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhh-----------------h----cccccCC--Ccchh--hhHHHHHHHH
Confidence 45677777777777766666666665544210 0 0001110 00112 1344566677
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904 281 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 281 ~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~ 342 (349)
..++|-.+-...+-+++++...+..+++.+++++++..+++|.+++.-.+|.++.+.|..+-
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~i 134 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTI 134 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEE
Confidence 77777665555566778888888899999999999999999999999999999988886533
No 100
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.82 E-value=11 Score=31.59 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHH
Q 018904 203 LQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNH 282 (349)
Q Consensus 203 ~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 282 (349)
.+..+..+++..+..+++..+-++.|..++ +. .-...-...|........+..+..+.. ......+++.|..=.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~s-pl-~As~isf~vGt~~L~~l~l~~~~~~~~--a~~~~~pwW~~~GG~-- 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGS-PL-LASLISFLVGTVLLLILLLIKQGHPGL--AAVASAPWWAWIGGL-- 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCC-hH-HHHHHHHHHHHHHHHHHHHHhcCCCch--hhccCCchHHHHccc--
Confidence 345666777888888888888888777653 33 222222333444333333222221111 111223445554321
Q ss_pred HHHHHHHHH---HHHHhhhH-HHHHHHHHHHHHHHHHHHH-HcC---CcchHHHHHHHHHHHHHhhhhcCCCC
Q 018904 283 ALSGIAVSM---VMKYADNI-VKVYSTSVAMLLTAVVSVF-LFG---FHLSLAFFLGSIVVSVSVYLHSAGKL 347 (349)
Q Consensus 283 a~~g~~~~~---~~k~~~~i-~~~~~~~~~~v~t~l~s~~-lfg---e~lt~~~~lG~~lV~~gv~l~~~~~~ 347 (349)
+|...+.- .....++. .......-+.+.+.+++.+ ++| .+++..-++|.++++.|+++....++
T Consensus 78 -lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~~ 149 (150)
T COG3238 78 -LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFGA 149 (150)
T ss_pred -hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccccc
Confidence 22222111 11111211 1222222344555566544 233 66999999999999999877766543
No 101
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.85 E-value=17 Score=30.38 Aligned_cols=68 Identities=15% Similarity=0.042 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHh----cCCCchHHHHHHHHHHhhhhhccc
Q 018904 124 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIIL----KKKLSEIQWAAFILLCCGCTTAQL 191 (349)
Q Consensus 124 i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~L----kekls~~qw~gl~l~~~Gv~lv~~ 191 (349)
+.|++-..+-...-.....+.+++.+.+ ..-+.+.-.++-.+=+ +++++..+++|+++..+|+.+++.
T Consensus 74 ~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 74 IGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred HccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3343333333333345566666655544 4555555555555433 489999999999999999666643
No 102
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=86.51 E-value=1.5 Score=34.07 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904 301 KVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 301 ~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~ 342 (349)
|..-..++..+-+.++++.++|++++.++.|.++++.+++..
T Consensus 65 Ki~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 65 KIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 333344455556677888999999999999999999998754
No 103
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.38 E-value=17 Score=28.01 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904 301 KVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 301 ~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~ 343 (349)
|..-.-++..+-+.+|++.++|++.+.++.|.+++..|+++.-
T Consensus 72 K~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 72 KTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 3333444555667889999999999999999999999998654
No 104
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=82.46 E-value=10 Score=35.05 Aligned_cols=141 Identities=15% Similarity=0.201 Sum_probs=80.5
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHH-HhhccCCccchHHHHHHHHHHHHHHHHHHHHHH---HHhhcCCCCCCccccccc
Q 018904 42 ANWKRKSVVTLALTVLTSSQAILIV-WSKRAGKYEYSVTTANFLVETLKCALSLAALAR---IWNHEGVTDDNRLSTTLD 117 (349)
Q Consensus 42 ~~~~~~~~~l~~~~~~~s~~~i~~k-~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~---~~~~~~~~~~~~~~~~~~ 117 (349)
..|..+..+++++.+..+-.++.-. ..++.| -++-+.+|.+-++.+..-+.+.-- .++.-... ++..-
T Consensus 160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG---Kh~~EalFytH~LsLP~Flf~~~div~~~~~~~~s--e~~~~--- 231 (330)
T KOG1583|consen 160 FWWLIGIALLVFALLLSAYMGIYQETTYQKYG---KHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKS--ESYLI--- 231 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHhccchHHHhcchHHHHHHHHhcC--cceec---
Confidence 3444565666666666665665543 244333 357899999988854332222100 01100000 00000
Q ss_pred hhhhhhHHHH-HHHHHHHHH-HHHHh-------cCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhh
Q 018904 118 EVIVYPIPAV-LYLVKNLLQ-YYIFA-------YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (349)
Q Consensus 118 ~l~~~~i~~l-l~~~~n~l~-~~al~-------~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~l 188 (349)
...-..+|.. .|.+.|.+. |.-.+ .+++-+.++...+.=.+..++|...++..+++.+|+|..+.|.|..+
T Consensus 232 p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~ 311 (330)
T KOG1583|consen 232 PLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLL 311 (330)
T ss_pred cccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHH
Confidence 0011123333 355555443 32222 24455667777888889999999999999999999999999999987
Q ss_pred cc
Q 018904 189 AQ 190 (349)
Q Consensus 189 v~ 190 (349)
..
T Consensus 312 fa 313 (330)
T KOG1583|consen 312 FA 313 (330)
T ss_pred HH
Confidence 64
No 105
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=80.30 E-value=8.9 Score=35.07 Aligned_cols=127 Identities=22% Similarity=0.141 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHH
Q 018904 205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHAL 284 (349)
Q Consensus 205 G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~ 284 (349)
|++..++|+++.+...|=.||.-.. | ++..|- .+.....+...+..+..+.. .+.++..+.=..-+.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g-D--g~~fQw-~~~~~i~~~g~~v~~~~~~p---------~f~p~amlgG~lW~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG-D--GFFFQW-VMCSGIFLVGLVVNLILGFP---------PFYPWAMLGGALWAT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC-C--cHHHHH-HHHHHHHHHHHHHHHhcCCC---------cceeHHHhhhhhhhc
Confidence 5566778888877766666644222 1 444332 22222222222222221110 122222222222233
Q ss_pred HHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHH-HcCCcc-----hHHHHHHHHHHHHHhhhhcC
Q 018904 285 SGIAVSMVMKYAD-NIVKVYSTSVAMLLTAVVSVF-LFGFHL-----SLAFFLGSIVVSVSVYLHSA 344 (349)
Q Consensus 285 ~g~~~~~~~k~~~-~i~~~~~~~~~~v~t~l~s~~-lfge~l-----t~~~~lG~~lV~~gv~l~~~ 344 (349)
++.+.-.++|..+ ++-...-..+..+.....|-+ +||++. .+...+|.++++.|..+|..
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 4444444444432 122223334444555555533 566543 34568999999999887764
No 106
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=79.78 E-value=19 Score=28.19 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChHHH-HHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGY-QILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~-~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
.|.+|=+++-....++|.-+++.|-+.+ -+.+++...||+++...+=.|.-.++-.+|..+.++|+.+.
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 3666777788888899999999998854 45667888999998877655555666778888888887654
No 107
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.20 E-value=8.7 Score=29.98 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=32.7
Q ss_pred hcCChHHHHHHh-hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 141 AYVDAPGYQILK-NLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 141 ~~~~~~~~~ll~-~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
+..+++.-.++. ......-+.++.+++||++++.+..|.++...+|..+
T Consensus 57 ~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 57 QTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred cccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 333444333333 2233445678999999999999999998887766543
No 108
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=70.82 E-value=14 Score=34.23 Aligned_cols=59 Identities=8% Similarity=0.153 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904 285 SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 285 ~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~ 343 (349)
+.+++...+.+..+..-.+.--..++|+.++|..+++.+++..+|+|...|..|+....
T Consensus 99 gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 99 GSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred hhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 33433333444333333333334568999999999999999999999999999987543
No 109
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=69.50 E-value=11 Score=35.16 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=62.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (349)
Q Consensus 116 ~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~ 190 (349)
+|.....+.+|.+-+.--...|.-+..++.-+.++..-.+-+.+.+++..+++++++...|.|+.+...|+..-.
T Consensus 240 ~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 240 LRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence 344445566666555555666777788888899999999999999999999999999999999999999998873
No 110
>PRK02237 hypothetical protein; Provisional
Probab=67.29 E-value=42 Score=26.36 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=35.9
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904 299 IVKVYSTSVAM--LLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA 344 (349)
Q Consensus 299 i~~~~~~~~~~--v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~ 344 (349)
--+.++.+-.. +.+.+.++.+-|++|+..-++|+++++.|+.+...
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 44566666554 45668889999999999999999999999876543
No 111
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=62.47 E-value=11 Score=29.42 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904 303 YSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 303 ~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~ 342 (349)
+.++++..++.+.|..+-.|...-..++|..++++|+++.
T Consensus 84 v~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 84 VTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred ecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 4566778899999998777777888899999999998763
No 112
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=57.14 E-value=19 Score=28.24 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHH--HHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 297 DNIVKVYSTSVAM--LLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 297 ~~i~~~~~~~~~~--v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
++--+.++.+-.. +.+.+.++.+-|++|+..-++|+++++.|+.+....
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3445566666543 567788899999999999999999999998765443
No 113
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=55.85 E-value=3.8 Score=37.68 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHhcCChHHHHHHhhhHHHHHHH-HHHHHhcCCCc-hHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHH
Q 018904 138 YIFAYVDAPGYQILKNLNIISTGV-LYRIILKKKLS-EIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALL 215 (349)
Q Consensus 138 ~al~~~~~~~~~ll~~~~pl~tal-ls~~~Lkekls-~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~ 215 (349)
+-++-.+-+...++++...+.+.| +-.+++|||+- +.-.+|+++.++-..+...-.. ..+..+.|+++.++.+++
T Consensus 42 iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tL---tGQ~LF~Gi~~l~l~~lL 118 (381)
T PF05297_consen 42 IIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTL---TGQTLFVGIVILFLCCLL 118 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHH
Confidence 344556666666676666555444 44556676653 4455555555544443322111 123567888877776666
Q ss_pred HHHHHHHHHHHhhcCCCCchH
Q 018904 216 SGFAGVYTEAIMKKRPSRNIN 236 (349)
Q Consensus 216 ~al~~v~~e~~~k~~~~~~~~ 236 (349)
.-.-..|.+ ++++... ++|
T Consensus 119 aL~vW~Ym~-lLr~~GA-s~W 137 (381)
T PF05297_consen 119 ALGVWFYMW-LLRELGA-SFW 137 (381)
T ss_dssp ---------------------
T ss_pred HHHHHHHHH-HHHHhhh-HHH
Confidence 555556644 6666654 554
No 114
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=54.80 E-value=1.5e+02 Score=26.00 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcCCCc
Q 018904 158 STGVLYRIILKKKLS 172 (349)
Q Consensus 158 ~talls~~~Lkekls 172 (349)
.+++..++++|+|++
T Consensus 188 ~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 188 VIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHhC
Confidence 444455666676654
No 115
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.34 E-value=8.9 Score=35.37 Aligned_cols=136 Identities=12% Similarity=0.032 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCccccccchhhhhh
Q 018904 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGV--TDDNRLSTTLDEVIVYP 123 (349)
Q Consensus 46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~ 123 (349)
.+.++-+...+..+.++|-.|-....-+. .-+...+...+.+++..+|.+.. ..+-. ...+++ ..++-+..+.
T Consensus 185 ~GvifGVlaSl~vAlnaiytkk~l~~v~~--~iw~lt~ynnv~a~lLflpll~l--nge~~~v~~~~~l-~a~~Fw~~mt 259 (347)
T KOG1442|consen 185 IGVIFGVLASLAVALNAIYTKKVLPPVGD--CIWRLTAYNNVNALLLFLPLLIL--NGEFQAVVGFPHL-PAIKFWILMT 259 (347)
T ss_pred hhhHHHHHHHHHHHHHHHhhheecccccC--eehhhHHHHHHHHHHHHHHHHHH--cchHHHHcCcccc-hHHHHHHHHH
Confidence 46667777777778888887732211011 12445567777788888887632 11100 001112 1233334556
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhh
Q 018904 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGC 186 (349)
Q Consensus 124 i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv 186 (349)
+.|++.+.-|....+=.+.++|-+..+-...+-..=.+++..+++|..+...|.+-++.+.|-
T Consensus 260 LsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs 322 (347)
T KOG1442|consen 260 LSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGS 322 (347)
T ss_pred HHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehh
Confidence 666665555555556667788888888888888888999999999999999997665544443
No 116
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.71 E-value=1.2e+02 Score=23.54 Aligned_cols=30 Identities=20% Similarity=0.035 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 160 GVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 160 alls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
..+|.+.+||.+++.++.|.++...|+..+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 458999999999999999998888777655
No 117
>PRK02237 hypothetical protein; Provisional
Probab=47.16 E-value=60 Score=25.50 Aligned_cols=47 Identities=6% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904 147 GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (349)
Q Consensus 147 ~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~ 193 (349)
.++.-...-++...+..+..=|+|.++..|+|..+.++|+.++...|
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 44555555666666778888899999999999999999999887654
No 118
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=45.37 E-value=1.4e+02 Score=27.71 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ccccccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhH
Q 018904 77 SVTTANFLVETLKCALSLAALARIWNHEGVTDDN-RLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLN 155 (349)
Q Consensus 77 ~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~ 155 (349)
+..+.+|.+..+++...+..+.+ ..+-.+.+. ...+.||..-...+-++...+.......-.+...+.++..+....
T Consensus 219 ss~EmvfySy~iG~vflf~~mvl--Tge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 219 SSSEMVFYSYGIGFVFLFAPMVL--TGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CcceEEEeeecccHHHHHHHHHh--cccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 34677788888887766655532 111111111 112344432222222222111111111222445677777788888
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904 156 IISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (349)
Q Consensus 156 pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~ 193 (349)
=-.|.++|++++.+.++....-+.++.+.|+.+-..+.
T Consensus 297 KavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 88999999999999999999999999999999876654
No 119
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=41.77 E-value=70 Score=25.08 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=39.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904 147 GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (349)
Q Consensus 147 ~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~ 193 (349)
.++.-...-++...+-.+.+=|+|..+..|+|..+.++|+.++...|
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 45555566677777788888899999999999999999999987754
No 120
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=40.09 E-value=5e+02 Score=27.87 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=33.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 146 PGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 146 ~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
+.+.++..+.|.-.|.++...+.+|-+..-+.+.+-.++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45678889999999999999887776555566666667777655
No 121
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=37.90 E-value=3.7e+02 Score=25.75 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=71.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhcCChH-HHHHHhhhHHHHHHHHHHHHh-------cCCCchHHHHHHHHHHhhhhh
Q 018904 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIIL-------KKKLSEIQWAAFILLCCGCTT 188 (349)
Q Consensus 117 ~~l~~~~i~~ll~~~~n~l~~~al~~~~~~-~~~ll~~~~pl~talls~~~L-------kekls~~qw~gl~l~~~Gv~l 188 (349)
..++...+-|++.-+.+..+=.+.+|+..+ ..++...+...+=+++--++. .++-...-++|+++.++|+.+
T Consensus 71 ~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai 150 (344)
T PF06379_consen 71 STLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAI 150 (344)
T ss_pred hHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHH
Confidence 344555667777777777777888888776 344444555555555544433 334456788999999999999
Q ss_pred ccccCC-------CCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 018904 189 AQLNSN-------SDRVLQTPLQGWIMAIVMALLSGFAGVYTE 224 (349)
Q Consensus 189 v~~~~~-------~~~~~~~~~~G~ll~l~a~~~~al~~v~~e 224 (349)
+...+. .+..+.+.-.|+++.+.+.+++|+.+.=.+
T Consensus 151 ~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 151 CGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred HhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 865421 111112355899999999999998877655
No 122
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=37.06 E-value=2e+02 Score=22.86 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=6.0
Q ss_pred ccccccccCCC
Q 018904 3 YRKIKDEDNDG 13 (349)
Q Consensus 3 ~~~~~~~~~~~ 13 (349)
|..++.+|+++
T Consensus 1 y~~l~~~d~d~ 11 (115)
T PF05915_consen 1 YSNLSNEDEDD 11 (115)
T ss_pred CCCCCCCCccc
Confidence 45566655543
No 123
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=35.86 E-value=4.5e+02 Score=26.10 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=45.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHh--hhhhccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Q 018904 148 YQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCC--GCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEA 225 (349)
Q Consensus 148 ~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~--Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~al~~v~~e~ 225 (349)
|.++.-.-+..+-.+.=.+-|.|+.+.|.+=+.++.+ =.+++..+ + +...+....+.++.|.++-+.|...
T Consensus 300 YgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlS---E----hi~F~~AYliAa~a~i~Li~~Y~~~ 372 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLS---E----HIGFNLAYLIAALACIGLISLYLSS 372 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH---h----hhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344445578999999864433332 22223332 2 2345666777888888999999999
Q ss_pred HhhcCC
Q 018904 226 IMKKRP 231 (349)
Q Consensus 226 ~~k~~~ 231 (349)
++|+..
T Consensus 373 vl~~~k 378 (430)
T PF06123_consen 373 VLKSWK 378 (430)
T ss_pred HHhcch
Confidence 988754
No 124
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=28.16 E-value=19 Score=33.21 Aligned_cols=30 Identities=10% Similarity=-0.055 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 018904 39 SELANWKRKSVVTLALTVLTSSQAILIVWSK 69 (349)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~s~~~i~~k~s~ 69 (349)
.+++.-..+.++++.+.++| ...|...+++
T Consensus 20 ~~~a~l~~~~llll~ail~w-~~iimsd~t~ 49 (381)
T PF05297_consen 20 QPHASLLFGLLLLLVAILVW-FFIIMSDLTQ 49 (381)
T ss_dssp -------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHH-HHHHHhcccc
Confidence 33333333444444455555 3344444543
No 125
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=27.60 E-value=4.8e+02 Score=23.86 Aligned_cols=122 Identities=8% Similarity=-0.030 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCA---LSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI 124 (349)
Q Consensus 48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~---i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i 124 (349)
|+.++.++++++++.+=+|..... +. +|+++..... .++...+ .++. ++ +.. .-.+
T Consensus 2 ~~a~~va~~~fGs~~vPvK~~~~g-----Dg---~~fQw~~~~~i~~~g~~v~~--~~~~-----p~----f~p--~aml 60 (254)
T PF07857_consen 2 YIACIVAVLFFGSNFVPVKKFDTG-----DG---FFFQWVMCSGIFLVGLVVNL--ILGF-----PP----FYP--WAML 60 (254)
T ss_pred chhHHHHHHHhcccceeeEeccCC-----Cc---HHHHHHHHHHHHHHHHHHHH--hcCC-----Cc----cee--HHHh
Confidence 456777889999999888765321 12 3444444322 2222221 2111 11 111 2455
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHH-H-Hhc--CC---CchHHHHHHHHHHhhhhhcc
Q 018904 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-I-ILK--KK---LSEIQWAAFILLCCGCTTAQ 190 (349)
Q Consensus 125 ~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~-~-~Lk--ek---ls~~qw~gl~l~~~Gv~lv~ 190 (349)
-|.+....|.+..-..+.+..+...++-++.-+.+.-... + +++ +. -....++|+++..+|..+..
T Consensus 61 gG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 61 GGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred hhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence 5688999999999999999999999999887776665442 2 333 22 34556778888888887654
No 126
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=25.94 E-value=1e+02 Score=27.19 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=38.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904 293 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343 (349)
Q Consensus 293 ~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~ 343 (349)
+|..++...+-...+...+.-+++|.++|+++....++.+.+-+.|+.+..
T Consensus 74 L~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia 124 (290)
T KOG4314|consen 74 LKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA 124 (290)
T ss_pred HHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEE
Confidence 444444444444455566788999999999999999999999999987654
No 127
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=25.40 E-value=2.2e+02 Score=19.29 Aligned_cols=46 Identities=9% Similarity=0.233 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018904 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKK 229 (349)
Q Consensus 174 ~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~ 229 (349)
...+|..+..+|++....++ .|.+.++++-...+......++..+.
T Consensus 4 v~v~G~~lv~~Gii~~~lPG----------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG----------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC----------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34677888888988886653 25666666666666666666666543
No 128
>PRK11901 hypothetical protein; Reviewed
Probab=25.16 E-value=1.1e+02 Score=29.04 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=7.4
Q ss_pred cccccccCCCCc
Q 018904 19 GDLESLRGKPIS 30 (349)
Q Consensus 19 ~~~~~~~~~~~~ 30 (349)
.||-..|.|..+
T Consensus 15 SDRrp~Rsr~~~ 26 (327)
T PRK11901 15 SDRRPTRSRKSS 26 (327)
T ss_pred ccCCCcccccCC
Confidence 677666666433
No 129
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=24.45 E-value=65 Score=26.40 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018904 200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKR 230 (349)
Q Consensus 200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~ 230 (349)
++..+|+++.-+-.+.|++|.+|++.+-+++
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ede 132 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDEDE 132 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCCCc
Confidence 4678999999999999999999998765333
No 130
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=24.16 E-value=1.2e+02 Score=17.79 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=13.8
Q ss_pred cchHHHHHHHHHHHHHhhhhcCCC
Q 018904 323 HLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 323 ~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
.-++..++|.+++..+.+++.+.+
T Consensus 9 ~~~~~~~~G~~l~~~~~~~~~~rk 32 (34)
T TIGR01167 9 GNSLLLLLGLLLLGLGGLLLRKRK 32 (34)
T ss_pred ccHHHHHHHHHHHHHHHHHheecc
Confidence 345566777766666555554433
No 131
>PRK11715 inner membrane protein; Provisional
Probab=23.88 E-value=7.3e+02 Score=24.70 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=37.3
Q ss_pred HhcCCCchHHHHHHHHHH--hhhhhccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018904 166 ILKKKLSEIQWAAFILLC--CGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP 231 (349)
Q Consensus 166 ~Lkekls~~qw~gl~l~~--~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~ 231 (349)
+=|.|+.+.|.+=+.++. .=.+++..+ + +...+....+.|+.|.++-+.|...++|+..
T Consensus 324 ~~~~~iHpiQYlLVGlAl~lFYLLLLSlS---E----HigF~~AYliAa~a~v~li~~Y~~~vl~~~k 384 (436)
T PRK11715 324 LKKLRIHPVQYLLVGLALVLFYLLLLSLS---E----HIGFTLAYLIAALACVLLIGFYLSAVLRSWK 384 (436)
T ss_pred hcCceecHHHHHHHHHHHHHHHHHHHHHH---h----hhchHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 336788888885443332 222233332 2 2345666778888888999999998888754
No 132
>PRK15087 hemolysin; Provisional
Probab=23.40 E-value=5.2e+02 Score=22.86 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhcCC
Q 018904 329 FLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 329 ~lG~~lV~~gv~l~~~~ 345 (349)
+.|+++-..|+.+|..+
T Consensus 172 ~~GG~~Y~~G~~fY~~~ 188 (219)
T PRK15087 172 AVGGVVYSLGVIFYVCK 188 (219)
T ss_pred HHHhHHHHhhHHHHccC
Confidence 47777777777777653
No 133
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=22.30 E-value=3.9e+02 Score=20.95 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCCCCC
Q 018904 276 VLMILNHALSGIAVSMVMKYADNIVKVYSTS--VAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 349 (349)
Q Consensus 276 ~l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~--~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~~~~ 349 (349)
|......++.-..+-..+....+--+.++.+ +=++.+.+..+++-|..|+.+-++|.++.+.|+.+....|-++
T Consensus 34 ~~l~g~~sL~lf~~llT~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR~~ 109 (109)
T COG1742 34 WLLPGALSLALFGWLLTLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPRGT 109 (109)
T ss_pred hHHHHHHHHHHHHHHHHcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCCCC
No 134
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=22.23 E-value=5.6e+02 Score=22.80 Aligned_cols=35 Identities=6% Similarity=-0.092 Sum_probs=17.5
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHH
Q 018904 145 APGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFI 180 (349)
Q Consensus 145 ~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~ 180 (349)
....+.+..+..+|..+-.+- +..|-....|.+.+
T Consensus 104 ~iV~~A~~~Ta~iF~~ls~~a-~~tk~Dfs~lg~~L 138 (219)
T PRK10447 104 DVIALALGGTALVFFCCSAYV-LTTRKDMSFLGGML 138 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHH
Confidence 345555555666665544333 44444444555443
No 135
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.43 E-value=1.2e+02 Score=23.49 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904 155 NIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (349)
Q Consensus 155 ~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv 189 (349)
.|++..++.-.+|-|++...-|.-+.+.++|+++-
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 57788888888888888766677777777777653
No 136
>COG2149 Predicted membrane protein [Function unknown]
Probab=20.80 E-value=4.4e+02 Score=21.06 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 018904 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGV 221 (349)
Q Consensus 174 ~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~al~~v 221 (349)
++=.++.+.-.|+.+-++.+...++......|.++++++....+.+..
T Consensus 29 WiRTsLallafGvai~~f~~~l~~~~~r~~lg~fii~~gil~~a~g~~ 76 (120)
T COG2149 29 WIRTSLALLAFGVAIDQFVPFLATPVIRELLGVFLILVGILLAALGAL 76 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777788888776543222333567788888887777776655
No 137
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=20.53 E-value=7.7e+02 Score=23.69 Aligned_cols=67 Identities=19% Similarity=0.125 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (349)
Q Consensus 127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~ 193 (349)
+.+.....+.-.-.+|.|--.=.-..+..++++++.++.+++.++|..=.+|..+.+..+.+-...|
T Consensus 258 l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P 324 (345)
T KOG2234|consen 258 LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP 324 (345)
T ss_pred HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence 4566777777788899998888888888999999999999999999999999888888887766443
Done!