Query 018904
Match_columns 349
No_of_seqs 243 out of 1512
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 07:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 2.7E-07 9.3E-12 72.4 10.0 70 123-192 34-104 (110)
2 2i68_A Protein EMRE; transmemb 98.4 3E-07 1E-11 74.8 6.2 69 124-192 35-104 (137)
3 3b5d_A Multidrug transporter E 98.1 1.7E-05 5.8E-10 62.0 10.0 66 281-346 39-105 (110)
4 2i68_A Protein EMRE; transmemb 98.1 3.2E-06 1.1E-10 68.7 5.6 67 279-345 37-104 (137)
5 7cei_B Protein (colicin E7 imm 24.6 24 0.00081 29.5 1.1 42 1-45 54-95 (206)
6 2hac_A T-cell surface glycopro 10.3 1.3E+02 0.0044 17.4 1.5 12 162-173 19-30 (33)
7 2v50_A Multidrug resistance pr 5.3 1.9E+03 0.064 22.8 8.9 24 313-336 379-402 (1052)
8 2ggv_A NS2B, non-structural pr 4.9 1.9E+02 0.0066 18.9 0.5 16 4-19 39-54 (56)
9 4dx5_A Acriflavine resistance 4.4 2.4E+03 0.082 21.9 9.0 25 312-336 378-402 (1057)
10 4dx5_A Acriflavine resistance 4.3 1.4E+03 0.049 23.6 7.1 26 311-336 910-935 (1057)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.60 E-value=2.7e-07 Score=72.35 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
....+++.++..+...+++++|.+.+..+ ..+.|+++++++++++||++++.||+|+.+.++|+..+...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34445688899999999999999998887 89999999999999999999999999999999999998654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.42 E-value=3e-07 Score=74.81 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904 124 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (349)
Q Consensus 124 i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~ 192 (349)
+..+++.++..+++.+++++|++.+..+ .++.|+++++++++++||++++.||+|+++.++|+.++...
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3345688899999999999999988777 89999999999999999999999999999999999998654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.13 E-value=1.7e-05 Score=61.98 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904 281 NHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346 (349)
Q Consensus 281 ~~a~~g~~~~~~~k~~~~i~~~~~-~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~ 346 (349)
..++...+..+.+|+.+....... ..+++++++++|+++|||++|..+++|.++|+.|+.+.+..+
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334444566778888776665555 688999999999999999999999999999999999877654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.11 E-value=3.2e-06 Score=68.70 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904 279 ILNHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG 345 (349)
Q Consensus 279 i~~~a~~g~~~~~~~k~~~~i~~~~~-~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~ 345 (349)
++..++...+..+.+|+.+....... +.+.|++++++|+++|||++|+.+++|.++|+.|+++.+..
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34445555667778888777666555 78999999999999999999999999999999999987653
No 5
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=24.63 E-value=24 Score=29.45 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=15.0
Q ss_pred CcccccccccCCCCCCCccccccccCCCCccccCCCCCchhhhhh
Q 018904 1 MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANWK 45 (349)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (349)
||-||-|..++-++ ..++-+++||..|+-.+..+-..+.+|.
T Consensus 54 ~e~rk~ke~~~~~a---~~kl~~espR~~PGvvTG~Gq~V~g~WL 95 (206)
T 7cei_B 54 LERRKQKENKEKDA---KAKLDKESKRNKPGKATGKGKPVNNKWL 95 (206)
T ss_dssp --------------------------CCCCCBCBCCCBCCCTTSS
T ss_pred HHHHHhhhhhhhhh---HHHhhhhccccCCCeeeccCeEcCchhh
Confidence 67787776555444 4567788999999998877777777774
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=10.29 E-value=1.3e+02 Score=17.40 Aligned_cols=12 Identities=33% Similarity=0.503 Sum_probs=6.5
Q ss_pred HHHHHhcCCCch
Q 018904 162 LYRIILKKKLSE 173 (349)
Q Consensus 162 ls~~~Lkekls~ 173 (349)
+..++++||+++
T Consensus 19 ~T~Ly~R~K~~~ 30 (33)
T 2hac_A 19 LTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHHHHhhc
Confidence 444556666554
No 7
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=5.30 E-value=1.9e+03 Score=22.78 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=16.2
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHH
Q 018904 313 AVVSVFLFGFHLSLAFFLGSIVVS 336 (349)
Q Consensus 313 ~l~s~~lfge~lt~~~~lG~~lV~ 336 (349)
++....++|.+++...++|.++.+
T Consensus 379 ~~~~l~~~g~~ln~~s~~gl~~~i 402 (1052)
T 2v50_A 379 TFGVLAAFGFSINTLTMFGMVLAI 402 (1052)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344456778999988887755443
No 8
>2ggv_A NS2B, non-structural protein 2B; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus}
Probab=4.91 E-value=1.9e+02 Score=18.88 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=4.1
Q ss_pred cccccccCCCCCCCcc
Q 018904 4 RKIKDEDNDGGGSSSG 19 (349)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (349)
+-+.+++.+|+|.|+.
T Consensus 39 ~L~~ee~~~~~~~~~~ 54 (56)
T 2ggv_A 39 QLMNDPGAGGGGSGGG 54 (56)
T ss_dssp EETTCTTC--------
T ss_pred EEcccCCCCCCCCCCC
Confidence 3445555566655543
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=4.41 E-value=2.4e+03 Score=21.86 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHH
Q 018904 312 TAVVSVFLFGFHLSLAFFLGSIVVS 336 (349)
Q Consensus 312 t~l~s~~lfge~lt~~~~lG~~lV~ 336 (349)
.++....++|.+++...++|.++.+
T Consensus 378 ~~~~~l~~~g~~ln~~sl~gl~~~i 402 (1057)
T 4dx5_A 378 GTFAVLAAFGFSINTLTMFGMVLAI 402 (1057)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHe
Confidence 3344456789999988888765543
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=4.26 E-value=1.4e+03 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHH
Q 018904 311 LTAVVSVFLFGFHLSLAFFLGSIVVS 336 (349)
Q Consensus 311 ~t~l~s~~lfge~lt~~~~lG~~lV~ 336 (349)
+.++.+..++|.+++...++|.++++
T Consensus 910 ~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 910 IGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 34455666789999999999876543
Done!