Query 018904
Match_columns 349
No_of_seqs 243 out of 1512
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 07:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018904.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018904hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 19.0 1.7E+02 0.012 23.2 7.6 63 121-187 4-66 (248)
2 d1iwga8 f.35.1.1 (A:513-566,A: 2.2 1.1E+03 0.083 17.0 8.8 27 311-337 96-122 (222)
3 d1mcvi_ g.3.2.1 (I:) Trypsin i 2.1 4.1E+02 0.03 12.9 1.2 11 1-11 4-14 (28)
4 d1c4qa_ b.40.2.1 (A:) Verotoxi 2.0 1.1E+02 0.0081 18.6 -1.3 20 2-21 10-29 (69)
5 d2p7tc1 f.14.1.1 (C:86-119) Po 1.8 6.3E+02 0.046 12.7 2.3 14 306-319 17-30 (34)
6 d1gdha2 c.23.12.1 (A:2-100,A:2 1.7 6E+02 0.044 17.0 2.2 32 12-43 74-105 (129)
7 g2bi6.2 g.3.12.1 (L:,H:1-7,H:3 1.7 4.5E+02 0.033 12.6 0.9 13 2-14 13-25 (28)
8 d1w9ea1 b.36.1.1 (A:110-194) S 1.6 3.8E+02 0.027 16.6 0.8 17 1-17 1-17 (85)
9 d1iyra_ a.164.1.1 (A:) C-termi 1.6 2.9E+02 0.021 17.8 0.0 21 6-26 21-41 (83)
10 d1v54k_ f.23.5.1 (K:) Mitochon 1.5 5.2E+02 0.038 14.7 1.0 23 320-342 4-26 (49)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=18.96 E-value=1.7e+02 Score=23.24 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhh
Q 018904 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT 187 (349)
Q Consensus 121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~ 187 (349)
++.+.|++..+.-.+....+..=.-.. .....+.++++.+.++.+|.-+.||+-=.+.+..+.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~----a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLF----AITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHH----HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHH----HHHHHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 455555555444333333333222222 223345666777888888988888875555444443
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.18 E-value=1.1e+03 Score=17.02 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHH
Q 018904 311 LTAVVSVFLFGFHLSLAFFLGSIVVSV 337 (349)
Q Consensus 311 ~t~l~s~~lfge~lt~~~~lG~~lV~~ 337 (349)
..++.+..+.|.+++....+|..+.+.
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhh
Confidence 445566778899999988888766443
No 3
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=2.06 E-value=4.1e+02 Score=12.86 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=6.5
Q ss_pred CcccccccccC
Q 018904 1 MEYRKIKDEDN 11 (349)
Q Consensus 1 ~~~~~~~~~~~ 11 (349)
.||+|-|...+
T Consensus 4 leym~c~~dsd 14 (28)
T d1mcvi_ 4 LEYMRCKQDSD 14 (28)
T ss_dssp CCCCBCSSGGG
T ss_pred chhhhcccccc
Confidence 47877665433
No 4
>d1c4qa_ b.40.2.1 (A:) Verotoxin-1/shiga-toxin, B-pentamer {Escherichia coli [TaxId: 562]}
Probab=2.03 E-value=1.1e+02 Score=18.59 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=12.4
Q ss_pred cccccccccCCCCCCCcccc
Q 018904 2 EYRKIKDEDNDGGGSSSGDL 21 (349)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (349)
||.|+.|+|.-..++++++.
T Consensus 10 efskyneddtftvkv~gkey 29 (69)
T d1c4qa_ 10 EYTKYNDDDTFTVKVGDKEL 29 (69)
T ss_dssp EEEEECTTSCEEEEETTEEE
T ss_pred EEEeecCCCceEEeecCcee
Confidence 67777777765554555544
No 5
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.76 E-value=6.3e+02 Score=12.69 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 018904 306 SVAMLLTAVVSVFL 319 (349)
Q Consensus 306 ~~~~v~t~l~s~~l 319 (349)
+...+++.+.-|++
T Consensus 17 s~glv~aa~atwfv 30 (34)
T d2p7tc1 17 SFGLVTAALATWFV 30 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhh
Confidence 33445555555544
No 6
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}
Probab=1.70 E-value=6e+02 Score=17.01 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCCCCCccccccccCCCCccccCCCCCchhhh
Q 018904 12 DGGGSSSGDLESLRGKPISVTNVASKSSELAN 43 (349)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (349)
.+.|..+=|++..++|-+....+|+.+.++.-
T Consensus 74 ~gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVA 105 (129)
T d1gdha2 74 YSIGFDHIDLDACKARGIKVGNAPHGATQARE 105 (129)
T ss_dssp ESSCCTTBCHHHHHHTTCEEECCCCSBHHHHH
T ss_pred cccCCccccHHHHHhCCCEEEECCCCCchHHH
Confidence 46677788999999999999998888776554
No 7
>g2bi6.2 g.3.12.1 (L:,H:1-7,H:32-41) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=1.66 E-value=4.5e+02 Score=12.61 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=8.8
Q ss_pred cccccccccCCCC
Q 018904 2 EYRKIKDEDNDGG 14 (349)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (349)
||.-++|.-+|.+
T Consensus 13 eykcycdlispnd 25 (28)
T g2bi6.2 13 EYKCYCDLISPND 25 (28)
T ss_dssp CSSCEECCCCSSS
T ss_pred hheeeeeeecccc
Confidence 6777777766654
No 8
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.64 E-value=3.8e+02 Score=16.57 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=9.9
Q ss_pred CcccccccccCCCCCCC
Q 018904 1 MEYRKIKDEDNDGGGSS 17 (349)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (349)
||.|++.-.+++.++.|
T Consensus 1 ~~pr~v~l~k~~~~~lG 17 (85)
T d1w9ea1 1 MDPREVILCKDQDGKIG 17 (85)
T ss_dssp CCCEEEEEECCTTSCCS
T ss_pred CCCEEEEEEeCCCCCEe
Confidence 66776666555555444
No 9
>d1iyra_ a.164.1.1 (A:) C-terminal domain of DFF45/ICAD (DFF-C domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.56 E-value=2.9e+02 Score=17.75 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=13.9
Q ss_pred cccccCCCCCCCccccccccC
Q 018904 6 IKDEDNDGGGSSSGDLESLRG 26 (349)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (349)
+|++..|+---|++|+|---.
T Consensus 21 LKeK~aPElsLSsQdLElV~k 41 (83)
T d1iyra_ 21 LREKQAPELSLSSQDLELVTK 41 (83)
T ss_dssp HHTTCCTTTTSCHHHHHHHHT
T ss_pred HccCCCccccccHHHHHHHHc
Confidence 466677777777777765433
No 10
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.47 E-value=5.2e+02 Score=14.68 Aligned_cols=23 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred cCCcchHHHHHHHHHHHHHhhhh
Q 018904 320 FGFHLSLAFFLGSIVVSVSVYLH 342 (349)
Q Consensus 320 fge~lt~~~~lG~~lV~~gv~l~ 342 (349)
|+++-.-..++|++....+++-|
T Consensus 4 FHdKYGn~vL~~Ga~fc~avW~y 26 (49)
T d1v54k_ 4 FHDKYGNAVLASGATFCVAVWVY 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcEEEecccchhhhhhhh
Done!