BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018905
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/305 (71%), Positives = 250/305 (81%), Gaps = 3/305 (0%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+GMVTPLG G ETTWRRLI GECGIR +T +DLKM +FD ET+L+ F QL+SKVAA V
Sbjct: 6 TGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFV 65
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G + GEF+E WLNSK ++A FI YA+CAADEAL DA+WLP+++ +KERTGV
Sbjct: 66 PYGSNPGEFDEALWLNSK---AVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGG 122
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
D V+AAQ+ICEKRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVTACATG
Sbjct: 123 GIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATG 182
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASRPFDC
Sbjct: 183 AHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCD 242
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HAK+RGAKIYAE+ GYGMSGDAHHITQP DGKGA+LAMTR
Sbjct: 243 RDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTR 302
Query: 344 ALKQA 348
AL+Q+
Sbjct: 303 ALRQS 307
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 267 bits (682), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 146/306 (47%), Positives = 188/306 (61%), Gaps = 15/306 (4%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+PL G E TW+RL+ GE G R +T ++ L ++A +
Sbjct: 15 TGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVD--------------DLACQIACRI 60
Query: 104 PCGI-SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXX 162
P G ++G FN D ++ K+ R + FI YA+ AAD+AL DA W P + + RTGV
Sbjct: 61 PVGDGTNGTFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIG 120
Query: 163 XXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACAT 222
V+A + +K RR+SPFFIP LIN+ASGHVS+K+ +GPNH+ VTACAT
Sbjct: 121 SGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACAT 180
Query: 223 GAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282
G H+IGDAAR+I FGD+DVMVAGGTES + +S+AGF +AL+T+ N P ASRP+D
Sbjct: 181 GTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDE 240
Query: 283 GRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMT 342
RDGF HA RGAKIYAEV GYGMSGDA HIT P G+GA M
Sbjct: 241 DRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMV 300
Query: 343 RALKQA 348
ALK+A
Sbjct: 301 AALKRA 306
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 253 bits (647), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 145/306 (47%), Positives = 195/306 (63%), Gaps = 15/306 (4%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+PL E +W+RL+ G+ G+R IT D+ L+ ++AA +
Sbjct: 11 TGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVS--------------DLSCQIAARI 56
Query: 104 PCGI-SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXX 162
P G ++G +N D + SK+ R + FI YA+ AAD+AL DA+W P + TGV
Sbjct: 57 PVGDGTNGTYNADLHMESKEQRKVDAFIVYAIAAADQALADAEWFPKSDEDQICTGVLIG 116
Query: 163 XXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACAT 222
V+A + +K RR+SPFFIP LIN+ASG+VS+KYG +GPNH+ VTAC+T
Sbjct: 117 SGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACST 176
Query: 223 GAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282
GAH+IGDAAR+I GD+DVM+AGGTES I+ +S+AGF RAL+T N P+ ASRP+D
Sbjct: 177 GAHAIGDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDV 236
Query: 283 GRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMT 342
RDGF HAKKRGA+IYAE+ GYG+SGDA+HIT P G+GA +M
Sbjct: 237 DRDGFVMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMM 296
Query: 343 RALKQA 348
ALK+A
Sbjct: 297 AALKRA 302
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 133/305 (43%), Positives = 177/305 (58%), Gaps = 16/305 (5%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G W RLI GE GI + E+ K + VAA V
Sbjct: 26 TGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYK--------------SIPCSVAAYV 71
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE ++++ D +S++ A+ AA+ A+ D+ W P + + TGV
Sbjct: 72 PRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGM 131
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A K ++SPFF+P+IL+NMA+G VS++Y +GPNHA TAC TG
Sbjct: 132 GMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTG 191
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 192 AHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--NSDPKLACRPFHPK 249
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +R A+IYAEV GYG+SGDA HIT P +G+GA+ M
Sbjct: 250 RDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAA 309
Query: 344 ALKQA 348
ALK A
Sbjct: 310 ALKDA 314
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 132/305 (43%), Positives = 176/305 (57%), Gaps = 16/305 (5%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G W RLI GE GI + E+ K + VAA V
Sbjct: 32 TGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYK--------------SIPCSVAAYV 77
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE ++++ D +S++ A+ AA+ A+ D+ W P + + TGV
Sbjct: 78 PRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGM 137
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A K ++SPFF+P+IL+NMA+G VS++Y +GPNHA TA TG
Sbjct: 138 GMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTG 197
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 198 AHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--NSDPKLACRPFHPK 255
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +R A+IYAEV GYG+SGDA HIT P +G+GA+ M
Sbjct: 256 RDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAA 315
Query: 344 ALKQA 348
ALK A
Sbjct: 316 ALKDA 320
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 178/305 (58%), Gaps = 23/305 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G +TP+G G E + + G+ G+R IT FD L ++AA V
Sbjct: 7 TGLGALTPIGVGQEAFHKAQLAGKSGVRPIT-------RFDASA-------LPVRIAAEV 52
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+ + ++L+ K+ R + RF+ YAL AA AL DA P D ER G
Sbjct: 53 -------DVDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERVGTLVGT 104
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+++ E+ R+SPFFIP ++ NMAS H++M+YGF GP+ VTACATG
Sbjct: 105 GIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATG 164
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
A ++G A RMIQ G++D+++AGGTE++I +++ F RAL+T+ N P++ASRPF
Sbjct: 165 ADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKASRPFTLS 223
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HAKKRGA+IYAE+ G+G S DAHHIT+PH +GKGA LAM R
Sbjct: 224 RDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMAR 283
Query: 344 ALKQA 348
ALK A
Sbjct: 284 ALKDA 288
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 174/305 (57%), Gaps = 16/305 (5%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+V+PLGCG E W+RLI G G+R + +D+ G+L++KV V
Sbjct: 29 TGIGIVSPLGCGKELVWQRLIGGGSGLRRLG-DDIA-------------GELSAKVGGTV 74
Query: 104 P--CGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXX 161
G F+ + + K+ R + RFI A+ AADEAL +A W P + Q+ERT
Sbjct: 75 QDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVV 134
Query: 162 XXXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACA 221
+A ++ + +RRLSPF IP L N+A+G +S+K+ F+GP VTACA
Sbjct: 135 ASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACA 194
Query: 222 TGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281
+IGDA RMI+ G++DV++AGG E++ D +S+ GF +RAL+T ++ P ASRPFD
Sbjct: 195 ASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFD 254
Query: 282 CGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAM 341
RDGF HA RGA+ AE+ GYG + DA+H+T DG GA+ AM
Sbjct: 255 RDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAM 314
Query: 342 TRALK 346
AL+
Sbjct: 315 KLALR 319
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 173/305 (56%), Gaps = 16/305 (5%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+V+PLGCG E W+RLI G G+R + +D+ G+L++KV V
Sbjct: 29 TGIGIVSPLGCGKELVWQRLIGGGSGLRRLG-DDIA-------------GELSAKVGGTV 74
Query: 104 P--CGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXX 161
G F+ + + K+ R + RFI A+ AADEAL +A W P + Q+ERT
Sbjct: 75 QDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVV 134
Query: 162 XXXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACA 221
+A ++ + +RRLSPF IP L N+A+G +S+K+ F+GP VTA A
Sbjct: 135 ASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXA 194
Query: 222 TGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281
+IGDA RMI+ G++DV++AGG E++ D +S+ GF +RAL+T ++ P ASRPFD
Sbjct: 195 ASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFD 254
Query: 282 CGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAM 341
RDGF HA RGA+ AE+ GYG + DA+H+T DG GA+ AM
Sbjct: 255 RDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAM 314
Query: 342 TRALK 346
AL+
Sbjct: 315 KLALR 319
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 197 bits (501), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 170/305 (55%), Gaps = 23/305 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G ++P+G +TTW + G GI +IT D + +H G+L +
Sbjct: 33 TGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTE------PYSVHLAGELKN------ 80
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
FN + ++ K+ R + RF YA+ AA EA+ DA+ L ++ +R GV
Sbjct: 81 --------FNIEDHIDKKEARRMDRFTQYAIVAAREAVKDAQ-LDINENTADRIGVWIGS 131
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
A + + +K RR+SPFF+P ++ +MA+G VS+ G +GPN A VTACATG
Sbjct: 132 GIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATG 191
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
+SIG+A +++Q GD+D M+ GGTE+ I +++AGF SRAL+T N + A RPF G
Sbjct: 192 TNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--NDDIETACRPFQEG 249
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF A+ RGA IYAE+ GYG +GDA+HIT P +G+G AM
Sbjct: 250 RDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQA 309
Query: 344 ALKQA 348
A+ A
Sbjct: 310 AMDDA 314
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 156/287 (54%), Gaps = 22/287 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+GM++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 23 TGLGMLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK------ 69
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 70 -------DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGS 121
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TAC +G
Sbjct: 122 GIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSG 181
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D
Sbjct: 182 VHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKE 240
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
RDGF HAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 241 RDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 156/287 (54%), Gaps = 22/287 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+GM++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 8 TGLGMLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK------ 54
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 55 -------DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGS 106
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TAC +G
Sbjct: 107 GIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSG 166
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D
Sbjct: 167 VHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKE 225
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
RDGF HAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 226 RDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 272
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 156/287 (54%), Gaps = 22/287 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+GM++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 23 TGLGMLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK------ 69
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 70 -------DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGS 121
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TAC +G
Sbjct: 122 GIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSG 181
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D
Sbjct: 182 VHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKE 240
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
RDGF HAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 241 RDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 163/305 (53%), Gaps = 22/305 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G +TP+G + W+ L+ G GI IT FD Q FG
Sbjct: 12 TGLGAITPIGNTLQDYWQGLMEGRNGIGPIT-------RFDASDQACRFGGEVK------ 58
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+F+ +L+ K+ + + RF +A+CA+ +A++DAK + ++ E GV
Sbjct: 59 -------DFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADE-IGVLIGT 110
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
D ++ +K R SPF IP ++ NMASG ++ G +GPN+ VTACA G
Sbjct: 111 GIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAG 170
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
+++IGDA R++Q G + M+ GGTE++I LS AGF +RAL+ + N P ASRPFD
Sbjct: 171 SNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHASRPFDKD 229
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF A RGAKIY E+ GY M+ DA+HIT P DG+GA A+
Sbjct: 230 RDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAW 289
Query: 344 ALKQA 348
ALK +
Sbjct: 290 ALKDS 294
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 155/287 (54%), Gaps = 22/287 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+GM++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 23 TGLGMLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK------ 69
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 70 -------DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGS 121
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TA +G
Sbjct: 122 GIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSG 181
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D
Sbjct: 182 VHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKE 240
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
RDGF HAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 241 RDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 155/287 (54%), Gaps = 22/287 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+GM++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 23 TGLGMLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK------ 69
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 70 -------DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGS 121
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TA +G
Sbjct: 122 GIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSG 181
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D
Sbjct: 182 VHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKE 240
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
RDGF HAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 241 RDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 161/308 (52%), Gaps = 29/308 (9%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREIT---PEDLKMGNFDRETQLHAFGQLTSKVA 100
TGIG VTP+G AET+W G G+ + T P+D + K+A
Sbjct: 9 TGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPV-----------------KIA 51
Query: 101 AVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVX 160
A + +F+ + +L K+ R RF YA+ +A+ A+ D+ L D R GV
Sbjct: 52 AELK------DFDVEKYLEKKEARKXDRFTHYAIASAEXAVQDS-GLVIDDSNANRVGVW 104
Query: 161 XXXXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTAC 220
++ + RR+SPFF+P + + SG VS+++G +G N VTAC
Sbjct: 105 IGSGIGGXETFETQYEIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTAC 164
Query: 221 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPF 280
AT +SIGDA ++I+ GD+D + GG E+ I S+AGF ++AL+ N P+ A RPF
Sbjct: 165 ATATNSIGDAFKVIERGDADAXITGGAEAPITKXSLAGFTANKALS--LNPDPETACRPF 222
Query: 281 DCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILA 340
D RDGF HAK RGAKIYAE+ GYG +GDA+HIT P +G+GA A
Sbjct: 223 DKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARA 282
Query: 341 MTRALKQA 348
A+ A
Sbjct: 283 XKXAIDDA 290
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 158/305 (51%), Gaps = 23/305 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG G+ +P+G E W L G+ GI IT D +FD +H ++
Sbjct: 28 TGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFD--HSDFD----VHNAAEIQ------- 74
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+F D + KD + YAL AA EA++ A L + ++R GV
Sbjct: 75 -------DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHAN-LDVEALNRDRFGVIVAS 126
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ D + EK +R+ P +P+ L NMASG+V+M++G G + TAC++
Sbjct: 127 GIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSS 186
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
+IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T + P AS PFD
Sbjct: 187 NDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED--PTRASIPFDKD 244
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
R+GF HA+KRGA I AEV GYG + DA+H+T PH +G+GAI A+
Sbjct: 245 RNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKL 304
Query: 344 ALKQA 348
AL++A
Sbjct: 305 ALEEA 309
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 158/305 (51%), Gaps = 23/305 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG G+ +P+G E W L G+ GI IT D +FD +H ++
Sbjct: 29 TGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFD--HSDFD----VHNAAEIQ------- 75
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+F D + KD + YAL AA EA++ A L + ++R GV
Sbjct: 76 -------DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHAN-LDVEALNRDRFGVIVAS 127
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ D + EK +R+ P +P+ L NMASG+V+M++G G + TAC++
Sbjct: 128 GIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSS 187
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
+IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T + P AS PFD
Sbjct: 188 NDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED--PTRASIPFDKD 245
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
R+GF HA+KRGA I AEV GYG + DA+H+T PH +G+GAI A+
Sbjct: 246 RNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKL 305
Query: 344 ALKQA 348
AL++A
Sbjct: 306 ALEEA 310
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 156/305 (51%), Gaps = 23/305 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG G+ +P+G W L G+ GI IT D +FD +H ++
Sbjct: 28 TGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFD--HSDFD----VHNAAEIQ------- 74
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
+F D + KD + YAL AA EA++ A L ++R GV
Sbjct: 75 -------DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHAN-LDVAALNRDRFGVIVAS 126
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ D + EK +R+ P +P+ L NMASG+V+M++G G + TAC++
Sbjct: 127 GIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSS 186
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
+IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T + P AS PFD
Sbjct: 187 NDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED--PTRASIPFDKD 244
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
R+GF HA+KRGA I AEV GYG + DA+H+T PH +G+GAI A+
Sbjct: 245 RNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKL 304
Query: 344 ALKQA 348
AL++A
Sbjct: 305 ALEEA 309
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 4/235 (1%)
Query: 111 EFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXD 170
+ + +S ++ + R R A+ A D+A+ DA L ++ ERTG+
Sbjct: 57 DIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADA-GLTEEEVSNERTGIIMGSGGPSTRT 115
Query: 171 TVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 230
VD+A + EK +R+ PF +P+ + + AS ++ + +G N++ +ACAT H IG+A
Sbjct: 116 IVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNA 175
Query: 231 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 290
MIQ+G D M AGG E LS+ F A+++KYN TP ASR +D RDGF
Sbjct: 176 YEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIA 234
Query: 291 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRAL 345
A RGAKIY E+ GYG + D + + P G+GAI M AL
Sbjct: 235 GGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMAL 287
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 4/235 (1%)
Query: 111 EFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXD 170
+ + +S ++ + R R A+ A D+A+ DA L ++ ERTG+
Sbjct: 74 DIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADA-GLTEEEVSNERTGIIMGSGGPSTRT 132
Query: 171 TVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 230
VD+A + EK +R+ PF +P+ + + AS ++ + +G N++ +ACAT H IG+A
Sbjct: 133 IVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNA 192
Query: 231 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 290
MIQ+G D M AGG E LS+ F A+++KYN TP ASR +D RDGF
Sbjct: 193 YEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIA 251
Query: 291 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRAL 345
A RGAKIY E+ GYG + D + + P G+GAI M AL
Sbjct: 252 GGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMAL 304
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 134/292 (45%), Gaps = 23/292 (7%)
Query: 57 ETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116
E+TW+ L+ GE GI + ED + +D ++ G L V DS
Sbjct: 30 ESTWKGLLAGESGIHAL--EDEFVTKWDLAVKIG--GHLKDPV---------------DS 70
Query: 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQ 176
+ D R ++ + A S + +R V V++
Sbjct: 71 HMGRLDMRRMSYVQRMGKLLGGQLWESAG---SPEVDPDRFAVVVGTGLGGAERIVESYD 127
Query: 177 MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQF 236
++ R++SP + I+ N A+ + ++ G + V+AC++G+ +I A R I
Sbjct: 128 LMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVM 187
Query: 237 GDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXX 296
GD+DV V GG E I+AL +A F RA++T+ N P+ ASRPFD RDGF
Sbjct: 188 GDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERASRPFDKDRDGFVFGEAGALM 246
Query: 297 XXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
HAK RGAK A + G G++ DA H+ P DG A AMTR+L+ A
Sbjct: 247 LIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELA 298
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 133/292 (45%), Gaps = 23/292 (7%)
Query: 57 ETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116
E+TW+ L+ GE GI + ED + +D ++ G L V DS
Sbjct: 30 ESTWKGLLAGESGIHAL--EDEFVTKWDLAVKIG--GHLKDPV---------------DS 70
Query: 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQ 176
+ D R ++ + A S + +R V V++
Sbjct: 71 HMGRLDMRRMSYVQRMGKLLGGQLWESAG---SPEVDPDRFAVVVGTGLGGAERIVESYD 127
Query: 177 MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQF 236
++ R++SP + I+ N A+ + ++ G + V+A ++G+ +I A R I
Sbjct: 128 LMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVM 187
Query: 237 GDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXX 296
GD+DV V GG E I+AL +A F RA++T+ N P+ ASRPFD RDGF
Sbjct: 188 GDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERASRPFDKDRDGFVFGEAGALM 246
Query: 297 XXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
HAK RGAK A + G G++ DA H+ P DG A AMTR+L+ A
Sbjct: 247 LIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELA 298
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+ +G + L G GI ++LK D + H +G + ++
Sbjct: 19 TGLGIVSSIGNNQQEVLASLREGRSGIT--FSQELK----DSGMRSHVWGNVKLDTTGLI 72
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGV 159
R + RF++ YA + ++A+ DA P R G+
Sbjct: 73 -------------------DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGL 113
Query: 160 XXXXXXXXXXDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V A + R L+ + P+ + + + + S ++ + G N++ +
Sbjct: 114 IAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISS 173
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++ASR
Sbjct: 174 ACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASR 232
Query: 279 PFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
+D RDGF HA RGA IYAE+ GYG + D + P G+GA+
Sbjct: 233 TYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAV 290
Query: 339 LAMTRAL 345
M A+
Sbjct: 291 RCMKMAM 297
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+ +G + L G GI ++LK D + H +G + ++
Sbjct: 19 TGLGIVSSIGNNQQEVLASLREGRSGI--TFSQELK----DSGMRSHVWGNVKLDTTGLI 72
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGV 159
R + RF++ YA + ++A+ DA P R G+
Sbjct: 73 -------------------DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGL 113
Query: 160 XXXXXXXXXXDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V A + R L+ + P+ + + + + S ++ + G N++ +
Sbjct: 114 IAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISS 173
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++ASR
Sbjct: 174 ACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASR 232
Query: 279 PFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
+D RDGF HA RGA IYAE+ GYG + D + P G+GA+
Sbjct: 233 TYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAV 290
Query: 339 LAMTRAL 345
M A+
Sbjct: 291 RCMKMAM 297
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+ +G + L G GI ++LK D + H +G + ++
Sbjct: 7 TGLGIVSSIGNNQQEVLASLREGRSGIT--FSQELK----DSGMRSHVWGNVKLDTTGLI 60
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGV 159
R + RF++ YA + ++A+ DA P R G+
Sbjct: 61 -------------------DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGL 101
Query: 160 XXXXXXXXXXDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V A + R L+ + P+ + + + + S ++ + G N++ +
Sbjct: 102 IAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISS 161
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++ASR
Sbjct: 162 ACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASR 220
Query: 279 PFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
+D RDGF HA RGA IYAE+ GYG + D + P G+GA+
Sbjct: 221 TYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAV 278
Query: 339 LAMTRAL 345
M A+
Sbjct: 279 RCMKMAM 285
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+ +G + L G GI ++LK D + H +G + ++
Sbjct: 7 TGLGIVSSIGNNQQEVLASLREGRSGIT--FSQELK----DSGMRSHVWGNVKLDTTGLI 60
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGV 159
R + RF++ YA + ++A+ DA P R G+
Sbjct: 61 -------------------DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGL 101
Query: 160 XXXXXXXXXXDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V A + R L+ + P+ + + + + S ++ + G N++ +
Sbjct: 102 IAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISS 161
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++ASR
Sbjct: 162 ACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASR 220
Query: 279 PFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
+D RDGF HA RGA IYAE+ GYG + D + P G+GA+
Sbjct: 221 TYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAV 278
Query: 339 LAMTRAL 345
M A+
Sbjct: 279 RCMKMAM 285
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+ +G + L G GI ++LK D + H +G + ++
Sbjct: 19 TGLGIVSSIGNNQQEVLASLREGRSGIT--FSQELK----DSGMRSHVWGNVKLDTTGLI 72
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGV 159
R + RF++ YA + ++A+ DA P R G+
Sbjct: 73 -------------------DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGL 113
Query: 160 XXXXXXXXXXDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V A + R L+ + P+ + + + + S ++ + G N++ +
Sbjct: 114 IAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISS 173
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++ASR
Sbjct: 174 ACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASR 232
Query: 279 PFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
+D RDGF HA RGA IYAE+ GYG + D + P G+GA+
Sbjct: 233 TYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAV 290
Query: 339 LAMTRAL 345
M A+
Sbjct: 291 RCMKMAM 297
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+ +G + L G GI ++LK D + H +G + ++
Sbjct: 7 TGLGIVSSIGNNQQEVLASLREGRSGIT--FSQELK----DSGMRSHVWGNVKLDTTGLI 60
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGV 159
R + RF++ YA + ++A+ DA P R G+
Sbjct: 61 -------------------DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGL 101
Query: 160 XXXXXXXXXXDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V A + R L+ + P+ + + + + S ++ + G N++ +
Sbjct: 102 IAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISS 161
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++ASR
Sbjct: 162 ACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASR 220
Query: 279 PFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
+D RDGF HA RGA IYAE+ GYG + D + P G+GA+
Sbjct: 221 TYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAV 278
Query: 339 LAMTRAL 345
M A+
Sbjct: 279 RCMKMAM 285
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 136/305 (44%), Gaps = 22/305 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGI M T L AETTW+ L+ + GIR T +D + FD ++ G L
Sbjct: 33 TGIAMTTALATDAETTWKLLLDRQSGIR--TLDDPFVEEFDLPVRIG--GHLLE------ 82
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
EF D L + R + + + +A S + R V
Sbjct: 83 -------EF--DHQLTRIELRRMGYLQRMSTVLSRRLWENAG---SPEVDTNRLMVSIGT 130
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ V + + + ++ +SP + + + N A+ V ++ + V+ACA+G
Sbjct: 131 GLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASG 190
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
A +I A + I G++D + GG E+ I+A+ +AGF + R + + N P A RPFD
Sbjct: 191 AEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRD 250
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HAK RGA I A + G ++ D H+ P +G+ A A+TR
Sbjct: 251 RDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITR 310
Query: 344 ALKQA 348
A++ A
Sbjct: 311 AIQLA 315
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 134/307 (43%), Gaps = 33/307 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+ +G + L G GI ++LK D + H +G + ++
Sbjct: 7 TGLGIVSSIGNNQQEVLASLREGRSGIT--FSQELK----DSGMRSHVWGNVKLDTTGLI 60
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGV 159
R + RF++ YA + ++A+ DA P R G+
Sbjct: 61 -------------------DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGL 101
Query: 160 XXXXXXXXXXDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V A + R L+ + P+ + + + + S ++ + G N++ +
Sbjct: 102 IAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISS 161
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
A AT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++ASR
Sbjct: 162 ASATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASR 220
Query: 279 PFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
+D RDGF HA RGA IYAE+ GYG + D + P G+GA+
Sbjct: 221 TYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAV 278
Query: 339 LAMTRAL 345
M A+
Sbjct: 279 RCMKMAM 285
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 134/307 (43%), Gaps = 33/307 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+ +G + L G GI ++LK D + H +G + ++
Sbjct: 7 TGLGIVSSIGNNQQEVLASLREGRSGIT--FSQELK----DSGMRSHVWGNVKLDTTGLI 60
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGV 159
R + RF++ YA + ++A+ DA P R G+
Sbjct: 61 -------------------DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGL 101
Query: 160 XXXXXXXXXXDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V A + R L+ + P+ + + + + S ++ + G N++ +
Sbjct: 102 IAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISS 161
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
A AT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++ASR
Sbjct: 162 AXATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASR 220
Query: 279 PFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
+D RDGF HA RGA IYAE+ GYG + D + P G+GA+
Sbjct: 221 TYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAV 278
Query: 339 LAMTRAL 345
M A+
Sbjct: 279 RCMKMAM 285
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 134/307 (43%), Gaps = 33/307 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V+ +G + L G GI ++LK D + H +G + ++
Sbjct: 19 TGLGIVSSIGNNQQEVLASLREGRSGI--TFSQELK----DSGMRSHVWGNVKLDTTGLI 72
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGV 159
R + RF++ YA + ++A+ DA P R G+
Sbjct: 73 -------------------DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGL 113
Query: 160 XXXXXXXXXXDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V A + R L+ + P+ + + + + S ++ + G N++ +
Sbjct: 114 IAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISS 173
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
A AT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++ASR
Sbjct: 174 ASATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASR 232
Query: 279 PFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
+D RDGF HA RGA IYAE+ GYG + D + P G+GA+
Sbjct: 233 TYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAV 290
Query: 339 LAMTRAL 345
M A+
Sbjct: 291 RCMKMAM 297
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 9/159 (5%)
Query: 183 LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVM 242
L+ + P+ + + + S ++ + +G N++ +ACAT AH IG A +IQ G D++
Sbjct: 130 LKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALELIQLGKQDIV 189
Query: 243 VAGGTESSIDALSMAGFCK---SRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXX 299
AGG E L C+ AL+TKYN TP +ASR +D RDGF
Sbjct: 190 FAGGGEE----LCWEXACEFDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGGGXVVVE 245
Query: 300 XXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
HA RGA IYAE+ GYG + D P G+GA+
Sbjct: 246 ELEHALARGAHIYAEIVGYGATSDGADXVAP--SGEGAV 282
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 184 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 243
R + + +P ++ V+ G +GP T C +G S+G+A R I+ G +DVM
Sbjct: 137 RHMFDYLVPSVM----PAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMF 192
Query: 244 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 303
AG ++ I + +A F RA TT N P+ ASRPFD RDGF
Sbjct: 193 AGAADTPITPIVVACFDAIRA-TTARNDDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDS 251
Query: 304 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGK 335
A RGA+I+AE+ GY +A+H+T DG+
Sbjct: 252 ALARGARIHAEISGYATRCNAYHMTGLKADGR 283
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 126/287 (43%), Gaps = 21/287 (7%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G VT LG + L G +R +M ++D LH +++AA +
Sbjct: 11 TGMGGVTALGSRWDEIEAALKAGRNAVR-------RMPDWDYFESLH------TRLAAPL 57
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P F + + K RS+ R YA+ A++ AL DA + + R GV
Sbjct: 58 PG------FAQPADWPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGS 111
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
M+ + ++ +++ + + +VS+ + +G +ACA+G
Sbjct: 112 SSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASG 171
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
+ +IG A I G +M+AGG E + ++A F A +T+ N P RPFD
Sbjct: 172 SQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTR-NDEPHLTPRPFDAK 229
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
RDG HAK RGA I+AE+ G+G + D H+TQP
Sbjct: 230 RDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP 276
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 24/238 (10%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G+V P G G W ++ G G+ +T FD S+ A +
Sbjct: 14 TGVGVVAPNGLGLAPYWSAVLDGRHGLGPVT-------RFD-----------VSRYPATL 55
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
I +F+ + + AL AAD AL DAK P + GV
Sbjct: 56 AGQID--DFHAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYD-MGVVTAN 112
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
T + + + + +S + + +G +S+++G +GP+ A V A G
Sbjct: 113 ACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGG 172
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281
++G A R I+ G + ++V+GG +S++D S ++T + P A PFD
Sbjct: 173 LDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTATD--PDRAYLPFD 227
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
+ASG +S G +GP+ + TAC++ ++ A ++ G+S + V GG
Sbjct: 155 VASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFV 214
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRG 317
F + RAL S+ F G DGF A++ G ++ A VRG
Sbjct: 215 DFSRQRALAADGR------SKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRG 268
Query: 318 YGMSGD 323
++ D
Sbjct: 269 SALNQD 274
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 91/246 (36%), Gaps = 16/246 (6%)
Query: 94 QLTSKVAAVVPCGISSGEFNEDSWLNSKDH-RSIARFIAYALCAADEALHDAKWLPSDQG 152
+L+ V A +P G F+ W S D SI R + + A +A + + P++
Sbjct: 2616 KLSRTVGAQIPTG-----FDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTPTELM 2670
Query: 153 QKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPF-FIPRILINMASGHVSMKY-GFQ 210
+ M L R P + +L N+ + HV Y G
Sbjct: 2671 RWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSYVGGY 2730
Query: 211 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRAL 265
G V ACAT A S+ + I+ G +D+++AGG E+ I MA + +
Sbjct: 2731 GAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATADTEMM 2790
Query: 266 TTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMS-GDA 324
K + + SR D R GF A K G + A V GY S D
Sbjct: 2791 RAK-GISDSKFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLA-VVGYAQSFADG 2848
Query: 325 HHITQP 330
H + P
Sbjct: 2849 VHTSIP 2854
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 195 LINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 253
IN S V+M GP V ACAT S+ I G + + + GG + +
Sbjct: 1080 FINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1139
Query: 254 LSMA-GFCKSRALTT---KYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA 309
S G K+ + T ++ TP E SRP R+GF A K G
Sbjct: 1140 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1199
Query: 310 KIYAEV 315
IY V
Sbjct: 1200 PIYGIV 1205
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 195 LINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 253
IN S V+M GP V ACAT S+ I G + + + GG + +
Sbjct: 1279 FINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1338
Query: 254 LSMA-GFCKSRALTT---KYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA 309
S G K+ + T ++ TP E SRP R+GF A K G
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1398
Query: 310 KIYAEV 315
IY V
Sbjct: 1399 PIYGIV 1404
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 195 LINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 253
IN S V+M GP V ACAT S+ I G + + + GG + +
Sbjct: 1279 FINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1338
Query: 254 LSMA-GFCKSRALTT---KYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA 309
S G K+ + T ++ TP E SRP R+GF A K G
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1398
Query: 310 KIYAEV 315
IY V
Sbjct: 1399 PIYGIV 1404
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 10/154 (6%)
Query: 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM 256
++ASG V+ G +GP TAC++G ++ A ++ + + +AGG +
Sbjct: 176 SVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSPGAF 235
Query: 257 AGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVR 316
F L +PF DGF A++ G + A +R
Sbjct: 236 TEFRSQGGLAADGR------CKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
Query: 317 GYGMSGD--AHHITQPHIDGKGAILAMTRALKQA 348
G ++ D ++ +T P G + RAL+ A
Sbjct: 290 GSAVNQDGASNGLTAPS--GPAQQRVIRRALENA 321
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 212 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES 249
P++ C +G S+ AA+ I G++DV++AGGTE+
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTEN 120
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G S+ A+++I GD+D+M+ GG E+
Sbjct: 93 CGSGLRSVSMASQLIALGDADIMLVGGAEN 122
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
M + +S + F+GP+ A TAC++ ++ +A + I G + GG + +
Sbjct: 141 MMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSV 200
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGF 287
F + L +P+ + FD +G+
Sbjct: 201 QFLRLGML------SPEGTCKAFDTAGNGY 224
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
CA+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 94 CASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 144
>pdb|1P6G|K Chain K, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P87|K Chain K, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AVY|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AW7|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2P|K Chain K, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2U|K Chain K, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOU|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|2QOW|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2QOY|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QP0|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QAL|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAN|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QB9|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBB|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBD|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBF|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBH|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBJ|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4K|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4M|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2VHO|K Chain K, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
pdb|2VHP|K Chain K, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
pdb|3DF1|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3DF3|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3J00|K Chain K, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|4ADV|K Chain K, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
pdb|3J0U|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0V|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0X|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J0Z|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J10|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J13|M Chain M, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
Length = 128
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 208 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 259
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 50 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 104
>pdb|1VS5|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS7|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3E1A|C Chain C, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|C Chain C, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
pdb|3I1M|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1O|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Q|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1S|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Z|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I21|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KC4|K Chain K, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
pdb|3OR9|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
pdb|3ORA|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3IZV|O Chain O, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|O Chain O, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
pdb|3SFS|K Chain K, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOQ|K Chain K, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAQ|K Chain K, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAS|K Chain K, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 129
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 208 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 259
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 51 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 105
>pdb|2GY9|K Chain K, Structure Of The 30s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYB|K Chain K, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 116
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 208 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 259
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 39 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 93
>pdb|3FIH|K Chain K, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IY8|K Chain K, Leishmania Tarentolae Mitonchondrial Ribosome Small
Subunit
pdb|2WWL|K Chain K, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 30s, The P-Site
Trna And The Tnac Leader Peptide (Part 1 Of 2).
pdb|3OFO|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFP|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3OFA|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The First 70s Ribosome.
pdb|3OFB|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The Second 70s Ribosome.
pdb|3OFX|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFY|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
pdb|3OAQ|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OAR|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|2YKR|K Chain K, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
pdb|4A2I|K Chain K, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
pdb|3J18|K Chain K, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
pdb|4GD1|K Chain K, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|4GD2|K Chain K, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 117
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 208 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 259
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 39 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 93
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
Query: 211 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRAL 265
GP V ACAT S+ I G + V + GG E S + +M ++
Sbjct: 1271 GPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEE 1330
Query: 266 TTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEV 315
+ P E SRP R+GF A + G IY V
Sbjct: 1331 FAR-GREPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIV 1379
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%)
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
M + +S + F+GP+ TAC++ ++ A + I+ G+ V GG + S
Sbjct: 139 MMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSL 198
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRG 317
F K L+ +GT R FD G+ A+ ++YA +
Sbjct: 199 QFMKLGMLSQ--DGT----CRSFDAEGTGYCRAEAVVAVLLTKKSLAR----RVYATILN 248
Query: 318 YGMSGD 323
G + D
Sbjct: 249 AGTNTD 254
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 221 ATGAHSIGDAARMIQFGDSDVMVAGGTES 249
++G +I AA IQ G S+V+VAGG E+
Sbjct: 92 SSGMQAIMSAAMQIQLGVSEVVVAGGVEA 120
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 260
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 86 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 122
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
Query: 182 RLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA--AVTA---------------CATGA 224
LRR P ++ +M G VS G QG + A AV A CA+G
Sbjct: 42 ELRRRYPDLDETLISDMILGVVS-PVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGL 100
Query: 225 HSIGDAARMIQFGDSDVMVAGGTES 249
++ AA+ ++ G D+++AGG ES
Sbjct: 101 EAVNTAAQKVRSGWDDLVLAGGVES 125
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTE 248
C + ++ DAAR I GD+ V + GG E
Sbjct: 91 CGSSXQALHDAARXIXTGDAQVCLVGGVE 119
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 221 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
A+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 106 ASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 155
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 221 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
A+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 95 ASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,369,364
Number of Sequences: 62578
Number of extensions: 328860
Number of successful extensions: 715
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 79
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)