BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018906
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TFR|A Chain A, Rnase H From Bacteriophage T4
pdb|3H8J|A Chain A, Native T4 Rnase H In The Absence Of Divalent Metal Ions
Length = 305
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 68 DFMAVCKEGYMVPKMK---CEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMPIGII 124
DF EG P MK E + ++ + V+ E + LV L+ F ++P I
Sbjct: 210 DFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLV-LIDFDYIPDNIA 268
Query: 125 LSILRVYTNIPLPERLAWYNY 145
+I+ Y + LP R Y+Y
Sbjct: 269 SNIVNYYNSYKLPPRGKIYSY 289
>pdb|3H8S|A Chain A, Structure Of D19n T4 Rnase H In The Presence Of Divalent
Mag
Length = 305
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 68 DFMAVCKEGYMVPKMK---CEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMPIGII 124
DF EG P MK E + ++ + V+ E + LV L+ F ++P I
Sbjct: 210 DFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLV-LIDFDYIPDNIA 268
Query: 125 LSILRVYTNIPLPERLAWYNY 145
+I+ Y + LP R Y+Y
Sbjct: 269 SNIVNYYNSYKLPPRGKIYSY 289
>pdb|2IHN|A Chain A, Co-Crystal Of Bacteriophage T4 Rnase H With A Fork Dna
Substrate
pdb|3H7I|A Chain A, Structure Of The Metal-Free D132n T4 Rnase H
pdb|3H8W|A Chain A, Structure Of D132n T4 Rnase H In The Presence Of Divalent
Ma
Length = 305
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 68 DFMAVCKEGYMVPKMK---CEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMPIGII 124
DF EG P MK E + ++ + V+ E + LV L+ F ++P I
Sbjct: 210 DFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLV-LIDFDYIPDNIA 268
Query: 125 LSILRVYTNIPLPERLAWYNY 145
+I+ Y + LP R Y+Y
Sbjct: 269 SNIVNYYNSYKLPPRGKIYSY 289
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 277 TTLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAG 324
T+ PE T GG +A+ A YIQ++ G L E N++ D + + G
Sbjct: 251 NTIFPEYT--GGDNAVXGAQYIQQLFTGKLQTEEXNISGADGTANIEG 296
>pdb|1RLZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its High Ionic
Strength, Low Ph Crystal Form
pdb|1ROZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1ROZ|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1RQD|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
pdb|1RQD|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
Length = 369
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 275 HGTTLPPELTVKGGKSAIEVANYIQRVLA-GTLGFECTNLTR 315
H +TLPPE T G NY + A GT GF+ TN R
Sbjct: 20 HSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGR 61
>pdb|1DHS|A Chain A, Crystal Structure Of The Nad Complex Of Human
Deoxyhypusine Synthase
Length = 361
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 275 HGTTLPPELTVKGGKSAIEVANYIQRVLA-GTLGFECTNLTR 315
H +TLPPE T G NY + A GT GF+ TN R
Sbjct: 12 HSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGR 53
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 48 LKEFGSNLPDLGLGDRETDHDFMAVCKEGYMVPKMKCE 85
LK G++ D+ +R T HD++A +EGY K +C+
Sbjct: 75 LKGHGTHYEDM---ERTTFHDWVASVEEGYGWLKQRCQ 109
>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
Length = 348
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 28 ATGFAKKPGVLVGEHKREAVLKEFGSNLPDLGLGDRETDHDFMAVC 73
A F K G ++G H+ ++KE G+++ L +GDR + F C
Sbjct: 47 AGDFGNKAGTVLG-HEGIGIVKEIGADVSSLQVGDRVSVAWFFEGC 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,137,537
Number of Sequences: 62578
Number of extensions: 422624
Number of successful extensions: 797
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 8
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)