RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 018906
(349 letters)
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 658 bits (1698), Expect = 0.0
Identities = 299/363 (82%), Positives = 319/363 (87%), Gaps = 27/363 (7%)
Query: 1 MVEHFAKTFLGVDKVIGTELEVTKSGRATGFAKKPGVLVGEHKREAVLKEFGSNLPDLGL 60
MVE F KTFLG DKV+GTELEV+KSGRATGF KKPGVLVG+HKR+AVLKEFG LPDLGL
Sbjct: 135 MVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFGDALPDLGL 194
Query: 61 GDRETDHDFMAVCKEGYMVPKMKCEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMP 120
GDRETDHDFM++CKEGYMVP+ KCEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMP
Sbjct: 195 GDRETDHDFMSICKEGYMVPRTKCEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMP 254
Query: 121 IGIILSILRVYTNIPLPERLAWYNYKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLD 180
IG ILS+LRVY NIPLPER+A YNYKLLGI+++VKG PPP PK GQ GVLF+CNHRTVLD
Sbjct: 255 IGFILSLLRVYLNIPLPERIARYNYKLLGIRLIVKGNPPPPPKKGQPGVLFVCNHRTVLD 314
Query: 181 PVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEG 240
PVVTAVALGRKISCVTYSISKF+E+ISPIKAVALSREREKDAA+IK+LLEEGDLVICPEG
Sbjct: 315 PVVTAVALGRKISCVTYSISKFSELISPIKAVALSREREKDAANIKRLLEEGDLVICPEG 374
Query: 241 TTCREPFLLRFSALFAELTDRIVPVAINTKQSVFHGTT---------------------- 278
TTCREPFLLRFSALFAELTDRIVPVAINTKQS+FHGTT
Sbjct: 375 TTCREPFLLRFSALFAELTDRIVPVAINTKQSMFHGTTVRGYKLLDPYFVFMNPRPTYEI 434
Query: 279 -----LPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVPSKK 333
LP ELT KGGKS IEVANYIQRVLAGTLGFECTNLTRKDKY+ILAGTDGRVPSKK
Sbjct: 435 TFLNQLPKELTCKGGKSPIEVANYIQRVLAGTLGFECTNLTRKDKYAILAGTDGRVPSKK 494
Query: 334 EKE 336
EK+
Sbjct: 495 EKK 497
>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
Length = 498
Score = 389 bits (1001), Expect = e-133
Identities = 185/377 (49%), Positives = 225/377 (59%), Gaps = 46/377 (12%)
Query: 1 MVEHFAKTFLGVDKVIGTELEVTKSGRATGFAKKPGVLVGEHKREAVLKEFGSNLPDLGL 60
MVE FAK L D+VIG+EL V + G ATGF + G V + V F P LGL
Sbjct: 121 MVERFAKEHLRADEVIGSELVVNRFGFATGFIR--GTDVDQSVANRVANLFVDERPQLGL 178
Query: 61 GDRETDHDFMAVCKEGYMVPKM----------KCEPLPRNKLLSPVIFHEGRLVQRPTPL 110
G F+++CKE P PLP VIFH+GRLV+RPTP
Sbjct: 179 GRISASSSFLSLCKEQIHPPFPANYNGDNQQQLVRPLP-------VIFHDGRLVKRPTPA 231
Query: 111 VALLTFLWMPIGIILSILRVYTNIPLPERLAWYNYKLLGIKVVVKGTPPPAPKNGQSGVL 170
ALL LW+P+GIIL+++R++ I LP Y ++ G KV+VKG PPP G SGVL
Sbjct: 232 TALLILLWIPLGIILAVIRIFVGIMLPMWAIPYVSRIFGGKVIVKGKPPPPASGGNSGVL 291
Query: 171 FICNHRTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLE 230
F+C HRT++DPVV + LGR I VTYSIS+ +EI+SPI V L+R R+ DA IK+ L
Sbjct: 292 FVCTHRTLMDPVVLSTVLGRSIPAVTYSISRLSEILSPIPTVRLTRIRDVDAEKIKRELA 351
Query: 231 EGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSVFHGTT------------ 278
GDLV+CPEGTTCREPFLLRFSALFAELTDRIVPVA+N + FH TT
Sbjct: 352 RGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDPIFF 411
Query: 279 ---------------LPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILA 323
LP E T GKS +VANY+QR+LA TLGFECTN TRKDKY +LA
Sbjct: 412 FMNPRPVYEVTFLNQLPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLA 471
Query: 324 GTDGRVPSKKEKEKEKE 340
G DG V ++ K+
Sbjct: 472 GNDGTVSYLSFLDQLKK 488
>gnl|CDD|215320 PLN02588, PLN02588, glycerol-3-phosphate acyltransferase.
Length = 525
Score = 236 bits (603), Expect = 2e-73
Identities = 140/373 (37%), Positives = 206/373 (55%), Gaps = 46/373 (12%)
Query: 1 MVEHFAKTFLGVDKVIGTELEVTKSGRATGFA--KKPGVLVGEHKREAVLKEFGSNLPDL 58
M++ F + +L ++ V+G ++++ G G KK L + + V +E ++ +
Sbjct: 158 MIDVFLRDYLEIEVVVGRDMKMV-GGYYLGIMEDKKKHELAFD---KVVQEERLNSGRLI 213
Query: 59 GLGDRETDHD---FMAVCKEGYMV---PKMKCEPLPRNKLLSPVIFHEGRLVQRPTPLVA 112
G+ + F C+E Y V K + LPR++ P+IFH+GRL +PTPL
Sbjct: 214 GITSFNSPSHRSLFSQFCQEIYFVRNSDKKSWQTLPRDQYPKPLIFHDGRLAIKPTPLNT 273
Query: 113 LLTFLWMPIGIILSILRVYTNIPLPERLAWYNYKLLGIKVVVKGTPPPAPKNGQSGVLFI 172
L+ F+W P L+ R+ + LP LA GI + + + + G LF+
Sbjct: 274 LVLFMWAPFAAALAAARLVFGLNLPYSLANPFLAFSGIHLTLTVNDLISSDR-KKGCLFV 332
Query: 173 CNHRTVLDPVVTAVALGRK-ISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEE 231
CNHRT+LDP+ + AL +K I VTYS+S+ +E+++PIK V L+R+R KD +++LL +
Sbjct: 333 CNHRTLLDPLYISYALRKKNIKAVTYSLSRLSELLAPIKTVRLTRDRVKDGQAMEKLLSQ 392
Query: 232 GDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSVFHGTTLP----------- 280
GDLV+CPEGTTCREP+LLRFS LF+E+ D IVPVAI++ + F+GTT
Sbjct: 393 GDLVVCPEGTTCREPYLLRFSPLFSEVCDVIVPVAIDSHVTFFYGTTASGLKAFDPIFFL 452
Query: 281 ----PELTVK-----------------GGKSAIEVANYIQRVLAGTLGFECTNLTRKDKY 319
P TV+ GK EVAN++Q + LGFECTNLTR+DKY
Sbjct: 453 LNPFPSYTVQLLDPVSGSSSSTCQDPDNGKLKFEVANHVQHEIGNALGFECTNLTRRDKY 512
Query: 320 SILAGTDGRVPSK 332
ILAG +G V K
Sbjct: 513 LILAGNNGVVKKK 525
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 91.7 bits (228), Expect = 4e-22
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 148 LGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKI-SCVTYSISKFT--- 203
+++ VKG PPP G VLF+ NH + D ++ + L R + V + +
Sbjct: 10 GFVRLEVKGPPPPP---GGGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEELLER 66
Query: 204 -EIISPIKAVALSREREKDAA----HIKQLLEEGD--LVICPEGTTCREP-FLLRFSALF 255
+ + A ++ R+ + AA ++ +LL + + I PEGT R L+F
Sbjct: 67 YPFFTRLGAFSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRTRRDKRPLQFKPGV 126
Query: 256 AELTDR----IVPVAINTKQSVFH---------GTTLPPELTVKGGKSAIEVANYIQRVL 302
A L ++ IVPVA+ +F G +P T G + A E+AN + R+L
Sbjct: 127 AHLAEKAGVPIVPVALRYTFELFEQFPEIFVRIGPPIPYAETALGEELAAELANRLTRLL 186
Query: 303 A 303
Sbjct: 187 D 187
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 67.8 bits (166), Expect = 4e-14
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 169 VLFICNHRTVLDPVVTAVALGRKISCVTYSISK-------FTEIISPIKAVALSREREKD 221
L + NH++ LDP+V + L RK+ V + K ++ + A+ + R +
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRK 60
Query: 222 AAH----IKQLLEEGD-LVICPEGTTCREPFLLRF---SALFAELTD-RIVPVAIN 268
A +LL+EG+ L+I PEGT R LL F +A A IVPVAI
Sbjct: 61 ARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIR 116
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 67.3 bits (165), Expect = 2e-13
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 145 YKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVT----YSIS 200
+LLG++V V+G PK V+ + NH++ LDP+V AL R I V + I
Sbjct: 5 LRLLGVRVRVEGLENLPPKGP---VIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIP 61
Query: 201 KFTEIISPIKAVALSREREKDAA----HIKQLLEEGD-LVICPEGTTCREPFLLRF---S 252
++ + A+ + R + A + L+EG+ +VI PEGT R+ LL F +
Sbjct: 62 FLGWLLRLLGAIPIDRGNGRSAREALREAIEALKEGESVVIFPEGTRSRDGELLPFKSGA 121
Query: 253 ALFAELTD-RIVPVAI-NTKQSVFHGTTLPPELTVK 286
A+ IVPVAI T S+ G LP V
Sbjct: 122 FRLAKEAGVPIVPVAISGTWGSLPKGKKLPRPGRVT 157
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 59.2 bits (144), Expect = 6e-11
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 168 GVLFICNHRTVLDPVVTAVALGRKISCVTYSISK--------FTEIISPIKAVALSRERE 219
+ + NH++ LDP++ ++ L K ++K ++ + + + R+
Sbjct: 15 PAIVVANHQSYLDPLLLSLLLP-KRGRPLVFVAKDELLNLPLLGWLMRLLGCIFIDRKNA 73
Query: 220 KDAA----HIKQLLEEGDLV-ICPEGTTCREPFLLRFSA----LFAELTDRIVPVAI 267
KDAA ++ +LL EG+LV I PEGT R LL F L E IVPVAI
Sbjct: 74 KDAANTLEYLVELLREGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVPIVPVAI 130
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 58.4 bits (141), Expect = 8e-10
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)
Query: 110 LVALLTFLWMPIGIILSILRVYTNIP--LPERLAWYNYKLLGIKVVVKGTPPPAPKNGQS 167
++ +L L ++++ R+ + L L G++V V+G PK
Sbjct: 8 ILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVEG-LENLPK--GG 64
Query: 168 GVLFICNHRTVLDPVVTAVALGRKISCVTYSISKFTEIISPI--------KAVALSRERE 219
L + NH++ LDP++ ++AL R+ ++K P+ A+ + RE
Sbjct: 65 PALVVANHQSFLDPLLLSLALPRRGP--VRFVAKKELFKVPLLGWLLRLLGAIPVDRENP 122
Query: 220 KDAA---HIKQLLEEGD-LVICPEGTT-----CREPFLLRFSALFAELTDRIVPVAIN 268
D + +L G LVI PEGT PF + L E IVPVAI
Sbjct: 123 DDETLRAAVARLKAGGRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVAIV 180
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 43.4 bits (103), Expect = 5e-05
Identities = 48/225 (21%), Positives = 78/225 (34%), Gaps = 59/225 (26%)
Query: 139 RLAWYNYKLLGIKVV-VKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVTY 197
R+ + G V+ V G P P ++ + + NH + +DP++ S +
Sbjct: 2 RVLLF---AFGFYVIKVHGKPDPP----EAPRIIVANHTSFIDPLIL-------FSDLFP 47
Query: 198 SI-----SKFTEIISPI----KAVALSREREKDAAH-IKQLLEEGD------LVICPEGT 241
SI I I + + R KD ++++ E ++I PEGT
Sbjct: 48 SIVAKKELGKLPFIGTILRALGCIFVDRSEPKDRKKVVEEIKERATDPNWPPILIFPEGT 107
Query: 242 TCREPFLLRFSALFAELTDRIV-PVAI--NTKQSVFHGTT-------------------- 278
T L+ F A V PVAI K +
Sbjct: 108 TTNGKALIMFK-KGAFEPGVPVQPVAIRYPNKFVDAFWNSSGYSSLMYLFRLLTQPANVL 166
Query: 279 ----LPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKY 319
LP + G+ E AN ++ ++A LG T+ T +DK
Sbjct: 167 EVEFLPVYTPSEEGEDPKEFANRVRLIMANKLGLPATDWTGEDKR 211
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 42.6 bits (101), Expect = 7e-05
Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 31/119 (26%)
Query: 145 YKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVT-------- 196
L G+KVVV G P PK L I NHR+ +D +V + R
Sbjct: 5 EWLSGVKVVVYGDEPKLPKER---ALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDS 61
Query: 197 -------YSISKFTEIISPIKAVALSREREKDAAHIKQLLEE-------GDLVICPEGT 241
+ E I L R+ EKD IK+ L+ L+I PEGT
Sbjct: 62 LKYPPLGGWGWQLGEFI------FLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 42.6 bits (101), Expect = 9e-05
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 41/151 (27%)
Query: 151 KVVVKGTPPPAPKNGQSGVLFICNHR-TVLDPVVTAVALGRKISCVTYS-------ISKF 202
++ V G PK+G V+F+ NH ++DP++ A L R + + + I
Sbjct: 15 RITVVG-RENVPKDG--PVIFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNPLIGWL 71
Query: 203 TEIISPIKAVALSREREKDAAHIK--------------QLLEEGD-LVICPEGTTCREPF 247
E A+ R KD A + L+ G + I PEG + P
Sbjct: 72 LESFG-----AIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGSHDRPR 126
Query: 248 LLRFSALFAEL---------TD-RIVPVAIN 268
LL A A + D +IVPV +N
Sbjct: 127 LLPLKAGAARMALEALEAGQKDVKIVPVGLN 157
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 41.2 bits (97), Expect = 1e-04
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 149 GIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVT----YSISKFTE 204
G+KV V G P P +S VL + NH++ LDP+ + A I + I F
Sbjct: 1 GLKVEVVG-PENLPA--KSPVLVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGI 57
Query: 205 IISPIKAVALSREREKDAAHI----KQLLEEGDLV-ICPEGTTCREPFLLRF------SA 253
++ A+ + RE + A ++L++G + + PEGT R +L F A
Sbjct: 58 MLWLTGAIFIDRENIRAIATALKAAIEVLKQGRSIGVFPEGTRSRGRDILPFKKGAFHIA 117
Query: 254 LFAELTDRIVPVAI 267
+ A + I+PV +
Sbjct: 118 IKAGV--PILPVVL 129
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 38.0 bits (89), Expect = 0.007
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 42/173 (24%)
Query: 121 IGIILSILRVYTNIPLPERL----AW----YNYKLL--GIKVVVKGTPPPAPKNGQSGVL 170
I ++ I +YT + LP+ L Y+L G + + P G G L
Sbjct: 395 IALVTLIGTLYTLLLLPDSLLRFLLLLLMHTRYRLRVEGRENI--------PAKG--GAL 444
Query: 171 FICNHRTVLDPVVTAVALGRKISCVTYS----------ISKFTEIISPIKAVALSREREK 220
+ NH + +D + A R I V K +I PI S K
Sbjct: 445 LLGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWFFKLFGVI-PI-----SSGGSK 498
Query: 221 DAAH-IKQLLEEGDLV-ICPEGTTCREPFLLRFSALF---AELTD-RIVPVAI 267
++ I++ L++G++V I PEG R L F F + TD I+P I
Sbjct: 499 ESLEFIRKALDDGEVVCIFPEGAITRNGQLNEFKRGFELIVKGTDVPIIPFYI 551
>gnl|CDD|233436 TIGR01490, HAD-SF-IB-hyp1, HAD-superfamily subfamily IB hydrolase,
TIGR01490. This hypothetical equivalog is a member of
the IB subfamily (TIGR01488) of the haloacid
dehalogenase (HAD) superfamily of aspartate-nucleophile
hydrolases. The sequences modelled by This model are all
bacterial. The IB subfamily includes the enzyme
phosphoserine phosphatase (TIGR00338). Due to this
relationship, several of these sequences have been
annotated as "phosphoserine phosphatase related
proteins," or "Phosphoserine phosphatase-family
enzymes." There is presently no evidence that any of the
enzymes in This model possess PSPase activity.
OMNI|NTL01ML1250 is annotated as a "possible
transferase," however this is due to the C-terminal
domain found on this sequence which is homologous to a
group of glycerol-phosphate acyltransferases (between
trusted and noise to TIGR00530). A subset of these
sequences including OMNI|CC1962, the Caulobacter
crescentus CicA protein cluster together and may
represent a separate equivalog [Unknown function,
Enzymes of unknown specificity].
Length = 202
Score = 32.7 bits (75), Expect = 0.15
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 2 VEHFAKTFLGVDKVIGTELEVTKSGRATGFAKKPGVLVGEHKREAVLKEFGSNLPDLGL- 60
V+ A+ LG+D IGT LE ++ G TG GE K A+ + DL
Sbjct: 117 VKPLAR-ILGIDNAIGTRLEESEDGIYTGNIDGN-NCKGEGKVHALAELLAEEQIDLKDS 174
Query: 61 ---GDRETDHDFMAVCKEGYMV 79
GD +D +++ Y+V
Sbjct: 175 YAYGDSISDLPLLSLVGHPYVV 196
>gnl|CDD|153247 cd07985, LPLAT_GPAT, Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: GPAT.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: glycerol-3-phosphate 1-acyltransferase (GPAT,
PlsB). LPLATs are acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
This subgroup includes glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB).
Length = 235
Score = 33.2 bits (76), Expect = 0.15
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 169 VLFICNHRTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQL 228
++++ R V DP+ ++GR + CV +S + P + ++QL
Sbjct: 54 MIYVAGDRVVSDPLCKPFSMGRNLLCV-HSKKHIDDP--PELKEEKMKANLATLKEMQQL 110
Query: 229 LEEGDLVI 236
L EG +I
Sbjct: 111 LNEGGQLI 118
>gnl|CDD|233435 TIGR01488, HAD-SF-IB, Haloacid Dehalogenase superfamily, subfamily
IB, phosphoserine phosphatase-like. This model
represents a subfamily of the Haloacid Dehalogenase
superfamily of aspartate-nucleophile hydrolases.
Subfamily IA, B, C and D are distinguished from the rest
of the superfamily by the presence of a variable domain
between the first and second conserved catalytic motifs.
In subfamilies IA and IB, this domain consists of an
alpha-helical bundle. It was necessary to model these
two subfamilies separately, breaking them at a an
apparent phylogenetic bifurcation, so that the resulting
model(s) are not so broadly defined that members of
subfamily III (which lack the variable domain) are
included. Subfamily IA includes the enzyme phosphoserine
phosphatase (TIGR00338) as well as three hypothetical
equivalogs. Many members of these hypothetical
equivalogs have been annotated as PSPase-like or
PSPase-family proteins. In particular, the hypothetical
equivalog which appears to be most closely related to
PSPase contains only Archaea (while TIGR00338 contains
only eukaryotes and bacteria) of which some are
annotated as PSPases. Although this is a reasonable
conjecture, none of these sequences has sufficient
evidence for this assignment. If such should be found,
this model should be retired while the PSPase model
should be broadened to include these sequences [Unknown
function, Enzymes of unknown specificity].
Length = 177
Score = 31.6 bits (72), Expect = 0.34
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 2 VEHFAKTFLGVDKVIGTELEVTKSGRATGFAKKPGVLVGEHKREAVLKEFGSNLPDLG-- 59
VE A+ LG+D V LE +G TG + GE K + + + + L
Sbjct: 103 VEPVAEK-LGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEESKITLKKI 161
Query: 60 --LGDRETD 66
+GD D
Sbjct: 162 IAVGDSVND 170
>gnl|CDD|128752 smart00476, DNaseIc, deoxyribonuclease I. Deoxyribonuclease I
catalyzes the endonucleolytic cleavage of
double-stranded DNA. The enzyme is secreted outside the
cell and also involved in apoptosis in the nucleus.
Length = 276
Score = 30.9 bits (70), Expect = 0.94
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 233 DLVICPEGTTCREPFLLRFSALFAELTD-RIVPVAINTKQSV 273
D C REPF+++FS+ + + IVP+ + +V
Sbjct: 116 DGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPEAAV 157
>gnl|CDD|192395 pfam09821, ABC_transp, ABC nitrate/sulfonate/bicarbonate family
transporter, ATPase subunit. Members of this family are
found in various prokaryotic ABC transporters,
predominantly involved in nitrate, sulfonate and
bicarbonate translocation.
Length = 120
Score = 29.4 bits (67), Expect = 1.0
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 221 DAAHIKQL--LEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVA 266
+AA + LE GD+ + P G E + LFAE VP+A
Sbjct: 19 EAAELLGFAELEGGDIELTPLGRRFAEADIDERKELFAEQLLAHVPLA 66
>gnl|CDD|227096 COG4754, COG4754, Uncharacterized conserved protein [Function
unknown].
Length = 157
Score = 29.7 bits (67), Expect = 1.1
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 229 LEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSVFHGTTLPPELTVKG 287
E GD+++ EG E + LF + I P A + + + L +
Sbjct: 60 AESGDIILTDEGKEYVESPIRERKELFRQKLKNIEPFATHLRLRLDDIEEAMEVLFEEE 118
>gnl|CDD|221786 pfam12814, Mcp5_PH, Meiotic cell cortex C-terminal pleckstrin
homology. The PH domain of these largely fungal
proteins is necessary for the cortical localisation of
the protein during meiosis, since the overall function
of the protein is to anchor dynein at the cell cortex
during the horsetail phase. During prophase I of fission
yeast, horsetail nuclear movement occurs, and this
starts when all the telomeres become bundled at the
spindle pole body - SPB. Subsequent to this, the nucleus
undergoes a dynamic oscillation, resulting in elongated
nuclear morphology. Horsetail nuclear movement is
thought to be predominantly due to the pulling of astral
microtubules that link the SPB to cortical
microtubule-attachment sites at the opposite end of the
cell; the pulling force is believed to be provided by
cytoplasmic dynein and dynactin.
Length = 121
Score = 29.2 bits (66), Expect = 1.3
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 138 ERLAWYNYKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVTY 197
+R W + + G+S + I + +V D L R
Sbjct: 32 KRYFWVHPYTRTLYWSSPNPKSEKVSEGKSKSVPIESVTSVKDGNPLPKGLKRF----NK 87
Query: 198 SISKFTEIISP---IKAVALSRER 218
SI I++P IK A +RER
Sbjct: 88 SI----VIVTPDRAIKFTAPTRER 107
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 30.4 bits (69), Expect = 1.5
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 146 KLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPV-VTAVALGRK--ISCVTY----S 198
K+ KVV G P + VL I NHRT +D + + +AL RK + + Y S
Sbjct: 75 KINKTKVVFSGDKVPPEER----VLLIANHRTEVDWMYLWDLAL-RKGCLGYIKYVLKSS 129
Query: 199 ISK---FTEIISPIKAVALSREREKDAAHIKQLLEEGD-------LVICPEGT 241
+ K F + + + R+ E D +I+Q+L L + PEGT
Sbjct: 130 LMKLPVFGWAFHIFEFIPVERKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGT 182
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 29.8 bits (67), Expect = 2.3
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 34 KPGVLVGEHKREAVLKEFGSN-LPDLGLGDRETDHDFMAVCKEGYMVPKMKCE--PLPRN 90
KP +VGE +L+ G N L +LG+ + M GY+V K + LP
Sbjct: 69 KPDRIVGE-----LLQPGGVNALKELGMEECAEGIG-MPC--FGYVVFDHKGKQVKLPYG 120
Query: 91 KLLSPVIFHEGRLVQ 105
S V FH G VQ
Sbjct: 121 AGASGVSFHFGDFVQ 135
>gnl|CDD|178307 PLN02705, PLN02705, beta-amylase.
Length = 681
Score = 29.5 bits (66), Expect = 3.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 311 TNLTRKDKYSILAGTDGRVPSKKEKEKEKERLKIQE 346
N S G G K+E+EKEKER K++E
Sbjct: 57 ENDVNNGNISSGGGGGGGGKGKREREKEKERTKLRE 92
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 29.0 bits (66), Expect = 3.9
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 19/99 (19%)
Query: 110 LVALLTFLWMPIGIILSILRVYTNIPLPERL----------------AWYNYKLLGIKVV 153
L+ L T W IIL +L++ IP R L +
Sbjct: 17 LLILNTLFWSVPIIILGLLKLLLPIPAIRRACSRLLNFIAEAWISINNVILRLLPRTQWD 76
Query: 154 VKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKI 192
V+G + + L I NH++ +D +V R+I
Sbjct: 77 VEG---LEGLSKKGWYLVISNHQSWVDILVLQYVFNRRI 112
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 27.2 bits (61), Expect = 4.2
Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Query: 332 KKEKEKEKERL---KIQEMED 349
K ++E+E +RL K +E+E+
Sbjct: 8 KAQREEELKRLKNLKREEIEE 28
>gnl|CDD|188519 TIGR04004, WcaM, colanic acid biosynthesis protein WcaM. This
protein of uncharacterized function is the final gene in
the conserved colanic acid biosynthesis cluster observed
in Enterobacteraceae.
Length = 464
Score = 29.1 bits (65), Expect = 4.2
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 200 SKFTEIISPIKAVALSREREKD-AAHIKQLLEEGDLVICPEGTTC 243
S+F + + V ++ D A KQ E V+ P G C
Sbjct: 25 SRFARALEGRQTVNIADYNPDDWIASFKQAFSEAQTVVVPAGLVC 69
>gnl|CDD|132411 TIGR03368, cellulose_yhjU, cellulose synthase operon protein YhjU.
This protein was identified by the partial phylogenetic
profiling algorithm (PMID:16930487) as part of the
system for cellulose biosynthesis in bacteria, and in
fact is found in cellulose biosynthesis gene regions.
The protein was designated YhjU in Salmonella
enteritidis, where disruption of its gene disrupts
cellulose biosynthesis and biofilm formation
(PMID:11929533) [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 518
Score = 28.8 bits (65), Expect = 4.4
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 92 LLSPVIFHEGRLVQRPTPLVALLTFLWMPI-GIILSILRVYTNIPLPERLAWYNYKLLGI 150
+L +F G L P +A FL +PI L ILR + +P L + + L
Sbjct: 8 ILKFALFWAGYLNFHPLLNLAFAAFLLLPIPNRWLRILRQFIAVPAGIALLYRDSWL--- 64
Query: 151 KVVVKGTPPPA 161
PP
Sbjct: 65 -------PPLD 68
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 28.4 bits (64), Expect = 4.6
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 2 VEHFAKTFLGVDKVIGTELEVTKSGRATGFAKKPGVLVGEHKREAV---LKEFGSNLPD- 57
VE A+ LG+D V+ ELE+ G+ TG P + GE K +A+ E G L +
Sbjct: 107 VEPIAE-RLGIDYVVANELEI-DDGKLTGRVVGP-ICDGEGKAKALRELAAELGIPLEET 163
Query: 58 LGLGDRETDHDFMAVCKEGY 77
+ GD D +
Sbjct: 164 VAYGDSANDLPMLEAAGLPI 183
>gnl|CDD|182253 PRK10123, wcaM, putative colanic acid biosynthesis protein;
Provisional.
Length = 464
Score = 29.0 bits (65), Expect = 4.7
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 200 SKFTEIISPIKAVALSREREKD-AAHIKQLLEEGDLVICPEGTTC 243
+ F + ++V ++ D A KQ EG V+ P G C
Sbjct: 23 TPFARALPARQSVNINDYNPHDWIASFKQAFSEGQTVVVPAGLVC 67
>gnl|CDD|220558 pfam10087, DUF2325, Uncharacterized protein conserved in bacteria
(DUF2325). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 96
Score = 26.8 bits (60), Expect = 5.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 209 IKAVALSREREKDAAHIKQLLEEGDLVICP 238
+ + REK I LL++ DLVI
Sbjct: 24 GEFIVHDGGREKKKKKIPALLKKADLVIVF 53
>gnl|CDD|185133 PRK15211, PRK15211, fimbrial chaperone protein PefD; Provisional.
Length = 229
Score = 27.9 bits (62), Expect = 7.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 127 ILRV-YTNIPLP---ERLAWYNYKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTV 178
I+R+ T+ LP E L W N + + PP PK + VL + + V
Sbjct: 86 IIRIMKTDSALPKDRESLFWLNVQEI----------PPKPKASEGNVLAVALNTQV 131
>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 28.0 bits (63), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 281 PELTVKGGKSAIEVANYIQRVLAGTLGF 308
PEL + G++A++ A I AGT+ F
Sbjct: 249 PELRERMGEAAVKAAKAINYENAGTVEF 276
>gnl|CDD|147835 pfam05899, Cupin_3, Protein of unknown function (DUF861). This
family consists of several proteins which seem to be
specific to plants and bacteria. The function of this
family is unknown.
Length = 74
Score = 25.7 bits (57), Expect = 9.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 229 LEEGDLVICPEGTTCREPFL 248
L GDLV+ P G T L
Sbjct: 48 LRAGDLVVFPAGFTGTWEVL 67
>gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional.
Length = 954
Score = 28.2 bits (64), Expect = 9.6
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 14/42 (33%)
Query: 289 KSAIEVANYIQRVLAGTLGFECTNLTRKDKYSIL-AGTDGRV 329
+ AI ANYI + L KD Y +L G +GRV
Sbjct: 777 EVAILNANYIAKRL-------------KDHYPVLYTGANGRV 805
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.407
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,237,678
Number of extensions: 1811386
Number of successful extensions: 1839
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1819
Number of HSP's successfully gapped: 46
Length of query: 349
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 251
Effective length of database: 6,590,910
Effective search space: 1654318410
Effective search space used: 1654318410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)