BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018907
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZLM0|CDC73_CHICK Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1
Length = 531
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 113/263 (42%), Gaps = 54/263 (20%)
Query: 127 DLELDDISLIRACERPLKDREALLECKGIDF----YSVLVSSTRREEER---QRIESQQR 179
D E+D I + ER + R +L+ G +F +++L S REE R QR
Sbjct: 215 DAEVDVTRDIVSRERVWRTRTTILQSTGKNFAKNIFAILQSVKAREEGRAPEQRPAPNTA 274
Query: 180 KDGLVAKN--------------RLMG--------VDERGIGYG---GGGGGGGGGAGDEA 214
+N R G +D G +G G +
Sbjct: 275 PTDPTLRNKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASARKTQT 334
Query: 215 YEANPKPKLLQLK----SGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVK 270
A P P+ + + K G PII++P+A+ +LIT+ N K+ L+D ++P+D K K
Sbjct: 335 PAAQPVPRPVSQARPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKK 394
Query: 271 NMNGMRPECVTVQKKFSRDRDQ---------VVKAYEVRDKPSTMKSEDWDRVVAVFVLG 321
G + E T+ R +DQ V Y V D+P + +DWDRVVAVFV G
Sbjct: 395 Q--GCQRENETL---IQRRKDQMQPGGTTVSVTVPYRVVDQPLKLMPQDWDRVVAVFVQG 449
Query: 322 KEWQFKEWPF----KDHVEIFNK 340
WQFK WP+ V+IF K
Sbjct: 450 PAWQFKGWPWLLPDGSPVDIFAK 472
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 64/110 (58%), Gaps = 10/110 (9%)
Query: 2 DPLSALRDFTIRSELDKVTQTGDEILFGSDYTFPSSIETAY----RSKQGN---LYTLQT 54
D LS LR + + + ++ GDE++FG ++++P +++T Y K+G YTL +
Sbjct: 3 DVLSVLRQYNTQKK--EIVVKGDEVIFG-EFSWPKNVKTNYVIWGTGKEGQPREYYTLDS 59
Query: 55 VVYFIKHYNLKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIE 104
+++ + + +L H Y++RA + +P V PDRK L YL G T ++ I+
Sbjct: 60 ILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLAYLNGETSTSSSID 109
>sp|Q8JZM7|CDC73_MOUSE Parafibromin OS=Mus musculus GN=Cdc73 PE=2 SV=1
Length = 531
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 115/263 (43%), Gaps = 54/263 (20%)
Query: 127 DLELDDISLIRACERPLKDREALLECKGIDF----YSVLVSSTRREEER---QRIES--- 176
D E+D I + ER + R +L+ G +F +++L S REE R QR
Sbjct: 215 DAEVDVTRDIVSRERVWRTRTTILQSTGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAA 274
Query: 177 ------QQRKDGLVAKNRL-------------MGVDERGIGYG---GGGGGGGGGAGDEA 214
+ ++ A NR +D G +G G +
Sbjct: 275 PVDPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASARKTQT 334
Query: 215 YEANPKPKLLQLK----SGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVK 270
A P P+ + + K G PII++P+A+ +LIT+ N K+ L+D ++P+D K K
Sbjct: 335 PAAQPVPRPVSQARPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKK 394
Query: 271 NMNGMRPECVTVQKKFSRDRDQ---------VVKAYEVRDKPSTMKSEDWDRVVAVFVLG 321
G + E T+ R +DQ V Y V D+P + +DWDRVVAVFV G
Sbjct: 395 Q--GCQRENETL---IQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQG 449
Query: 322 KEWQFKEWPF----KDHVEIFNK 340
WQFK WP+ V+IF K
Sbjct: 450 PAWQFKGWPWLLPDGSPVDIFAK 472
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 64/110 (58%), Gaps = 10/110 (9%)
Query: 2 DPLSALRDFTIRSELDKVTQTGDEILFGSDYTFPSSIETAY----RSKQGN---LYTLQT 54
D LS LR + I+ + ++ GDE++FG ++++P +++T Y K+G YTL +
Sbjct: 3 DVLSVLRQYNIQKK--EIVVKGDEVIFG-EFSWPKNVKTNYVVWGTGKEGQPREYYTLDS 59
Query: 55 VVYFIKHYNLKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIE 104
+++ + + +L H Y++RA + +P V PDRK L YL G ++ I+
Sbjct: 60 ILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASID 109
>sp|Q6P1J9|CDC73_HUMAN Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1
Length = 531
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 115/263 (43%), Gaps = 54/263 (20%)
Query: 127 DLELDDISLIRACERPLKDREALLECKGIDF----YSVLVSSTRREEER---QRIES--- 176
D E+D I + ER + R +L+ G +F +++L S REE R QR
Sbjct: 215 DAEVDVTRDIVSRERVWRTRTTILQSTGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAA 274
Query: 177 ------QQRKDGLVAKNRL-------------MGVDERGIGYG---GGGGGGGGGAGDEA 214
+ ++ A NR +D G +G G +
Sbjct: 275 PVDPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASARKTQT 334
Query: 215 YEANPKPKLLQLK----SGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVK 270
A P P+ + + K G PII++P+A+ +LIT+ N K+ L+D ++P+D K K
Sbjct: 335 PAAQPVPRPVSQARPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKK 394
Query: 271 NMNGMRPECVTVQKKFSRDRDQ---------VVKAYEVRDKPSTMKSEDWDRVVAVFVLG 321
G + E T+ R +DQ V Y V D+P + +DWDRVVAVFV G
Sbjct: 395 Q--GCQRENETL---IQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQG 449
Query: 322 KEWQFKEWPF----KDHVEIFNK 340
WQFK WP+ V+IF K
Sbjct: 450 PAWQFKGWPWLLPDGSPVDIFAK 472
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 64/110 (58%), Gaps = 10/110 (9%)
Query: 2 DPLSALRDFTIRSELDKVTQTGDEILFGSDYTFPSSIETAY----RSKQGN---LYTLQT 54
D LS LR + I+ + ++ GDE++FG ++++P +++T Y K+G YTL +
Sbjct: 3 DVLSVLRQYNIQKK--EIVVKGDEVIFG-EFSWPKNVKTNYVVWGTGKEGQPREYYTLDS 59
Query: 55 VVYFIKHYNLKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIE 104
+++ + + +L H Y++RA + +P V PDRK L YL G ++ I+
Sbjct: 60 ILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASID 109
>sp|Q4V8C8|CDC73_RAT Parafibromin OS=Rattus norvegicus GN=Cdc73 PE=2 SV=1
Length = 531
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 115/263 (43%), Gaps = 54/263 (20%)
Query: 127 DLELDDISLIRACERPLKDREALLECKGIDF----YSVLVSSTRREEER---QRIES--- 176
D E+D I + ER + R +L+ G +F +++L S REE R QR
Sbjct: 215 DAEVDVTRDIVSRERVWRTRTTILQSTGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAA 274
Query: 177 ------QQRKDGLVAKNRL-------------MGVDERGIGYG---GGGGGGGGGAGDEA 214
+ ++ A NR +D G +G G +
Sbjct: 275 PVDPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASARKTQT 334
Query: 215 YEANPKPKLLQLK----SGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVK 270
A P P+ + + K G PII++P+A+ +LIT+ N K+ L+D ++P+D K K
Sbjct: 335 PAAQPVPRPVSQARPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKK 394
Query: 271 NMNGMRPECVTVQKKFSRDRDQ---------VVKAYEVRDKPSTMKSEDWDRVVAVFVLG 321
G + E T+ R +DQ V Y V D+P + +DWDRVVAVFV G
Sbjct: 395 Q--GCQRENETL---IQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQG 449
Query: 322 KEWQFKEWPF----KDHVEIFNK 340
WQFK WP+ V+IF K
Sbjct: 450 PAWQFKGWPWLLPDGSPVDIFAK 472
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 64/110 (58%), Gaps = 10/110 (9%)
Query: 2 DPLSALRDFTIRSELDKVTQTGDEILFGSDYTFPSSIETAY----RSKQGN---LYTLQT 54
D LS LR + I+ + ++ GDE++FG ++++P +++T Y K+G YTL +
Sbjct: 3 DVLSVLRQYNIQKK--EIVVKGDEVIFG-EFSWPKNVKTNYVVWGTGKEGQPREYYTLDS 59
Query: 55 VVYFIKHYNLKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIE 104
+++ + + +L H Y++RA + +P V PDRK L YL G ++ I+
Sbjct: 60 ILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASID 109
>sp|Q06697|CDC73_YEAST Cell division control protein 73 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC73 PE=1 SV=1
Length = 393
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 140/325 (43%), Gaps = 53/325 (16%)
Query: 33 TFPSSIETAYRSKQGNLYTLQTVVYFIKHYNLKHTDYIQRARSNKLPAVTLPDRKPLYEY 92
+FP + ET G+L L+ +V+ + + DY+ ++ +L V+ R L +
Sbjct: 49 SFPLNEETEIEI-DGSLVQLRIIVHCWMNKDSSAADYLADCQNKQLTNVSFLQRTDLINW 107
Query: 93 LTGVTDSADQIETV-----------IANDHVLNDGKIVETDGGG---DDLELDDISLIRA 138
L+G T+S+ ++ I N + + V++ +D E+ D ++
Sbjct: 108 LSGNTESSQYLKAPGQKGETSDKVDIENKTLAGELSTVKSTTSASLENDSEVSDPVVVET 167
Query: 139 C--ERPLKDREALLE-CKGIDFYSVLVSSTRREEERQRIESQQRKDGLVAKNRLMGVDER 195
ER L D + L K I+F ++ ++ E + ++S + G + ++L +
Sbjct: 168 MKHERILVDHNSALRGAKPINFGYLI-----KDAELKLVQSIK---GSLRGSKLPPGHKG 219
Query: 196 GIGYGGGGGGGGGGAGDEAYEANPKPKLLQLKSGKIGEGVPIILVPSASQTLITIYNVKE 255
G G GG + PIIL+PSA+ +++T+ N+K+
Sbjct: 220 AHGRISKTNGSSGGPRKD----------------------PIILIPSAASSILTVANIKQ 257
Query: 256 FLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPSTMKSEDWDRVV 315
FL + Y V +N+ + V ++K F R + ++ V + K E WDRVV
Sbjct: 258 FLLESKY----VNPRNLPSVPNGLVNIEKNFER-ISRPIRFIIVDNTRMFTKPEYWDRVV 312
Query: 316 AVFVLGKEWQFKEWPFKDHVEIFNK 340
A+F G WQF + + E+F +
Sbjct: 313 AIFTTGHTWQFNNYQWNSPQELFQR 337
>sp|Q9UUE7|CDC73_SCHPO Cell division control protein 73 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cdc73 PE=3 SV=1
Length = 371
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 127/297 (42%), Gaps = 58/297 (19%)
Query: 50 YTLQTVVYFIKHYNLKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIETVIAN 109
++L++V + + +YIQ+ + +T +R L +L G +DS E +I
Sbjct: 64 FSLRSVYFAWLLRDTSIAEYIQQCSELGIQNLTFLERTDLISWLEGSSDS----EHIIGL 119
Query: 110 DHVLNDGKIVETDGGGD-DLEL----DDISLIRACERPLKDREALLE-CKGIDFYSVLVS 163
+ +G TD D++L ++++ + R + + ++L K IDF S+
Sbjct: 120 EKPKPEGS---TDAATSMDVDLHKKSEEVNWLFENTRTVSNHNSVLHGIKPIDFISL--- 173
Query: 164 STRREEERQRIESQQRKDGLVAKNRLMGVDERGIGYGGGGGGGGGGAGDEAYEANPKPKL 223
RKD L Y DE
Sbjct: 174 ---------------RKDVL--------------DYIHANKATASAHADE---------- 194
Query: 224 LQLKSGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYI-PTDVKVKNMNGMRPECVTV 282
Q + K PIIL+ ++ +L+T++N+K+FLE+G+++ P + G PE + +
Sbjct: 195 -QERPAKKRNRDPIILLSPSASSLLTMHNIKKFLEEGIFVPPAEAAHAAGGGRGPELIAL 253
Query: 283 QKKFSRDRDQVVKAYEVRDKPSTMKSEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFN 339
K S + ++ + + + K + WDRVV VF G+ WQF+++ + + ++F+
Sbjct: 254 SHKSSNSKFGTMR-FIIVEGTEKFKPDYWDRVVCVFTTGQAWQFRDYKWSEPHQLFH 309
>sp|A7GGC7|AROE_CLOBL Shikimate dehydrogenase OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=aroE PE=3 SV=1
Length = 258
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 27 LFGSDYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYNLKHT---DYIQRARSNKLPA--V 81
L G + + S E N Y + +F K +NLK D+I+ N + V
Sbjct: 6 LIGKNINYSESPEI-----HNNYYKKNNIPFFYKIFNLKQDQIDDFIKNLHKNNIKGFNV 60
Query: 82 TLPDRKPLYEYLTGVTDSADQIETV 106
T+P ++ + +YL + AD+I V
Sbjct: 61 TIPYKETILQYLNDIVYPADKIGAV 85
>sp|C1FSW2|AROE_CLOBJ Shikimate dehydrogenase OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=aroE PE=3 SV=1
Length = 258
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 27 LFGSDYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYNLKHT---DYIQRARSNKLPA--V 81
L G + + S E N Y + +F K +NLK D+I+ N + V
Sbjct: 6 LIGKNINYSESPEI-----HNNYYKKNNIPFFYKIFNLKQDQIDDFIKNLHKNNIKGFNV 60
Query: 82 TLPDRKPLYEYLTGVTDSADQIETV 106
T+P ++ + +YL + AD+I V
Sbjct: 61 TIPYKETILQYLNDIVYPADKIGAV 85
>sp|A5I4X1|AROE_CLOBH Shikimate dehydrogenase OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=aroE PE=3 SV=1
Length = 258
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 27 LFGSDYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYNLKHT---DYIQRARSNKLPA--V 81
L G + + S E N Y + +F K +NLK D+I+ N + V
Sbjct: 6 LIGKNINYSESPEI-----HNNYYKKNNIPFFYKIFNLKQDQIDDFIKNLHKNNIKGFNV 60
Query: 82 TLPDRKPLYEYLTGVTDSADQIETV 106
T+P ++ + +YL + AD+I V
Sbjct: 61 TIPYKETILQYLNDIVYPADKIGAV 85
>sp|C3L127|AROE_CLOB6 Shikimate dehydrogenase OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=aroE PE=3 SV=1
Length = 258
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 27 LFGSDYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYNLKHT---DYIQRARSNKLPA--V 81
L G + + S E N Y + +F K +NLK D+I+ N + V
Sbjct: 6 LIGKNINYSESPEI-----HNNYYKKNNIPFFYKIFNLKQDQIDDFIKNLHKNNIKGFNV 60
Query: 82 TLPDRKPLYEYLTGVTDSADQIETV 106
T+P ++ + +YL + AD+I V
Sbjct: 61 TIPYKETILQYLNDIVYPADKIGAV 85
>sp|A7FWA9|AROE_CLOB1 Shikimate dehydrogenase OS=Clostridium botulinum (strain ATCC 19397
/ Type A) GN=aroE PE=3 SV=1
Length = 258
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 27 LFGSDYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYNLKHT---DYIQRARSNKLPA--V 81
L G + + S E N Y + +F K +NLK D+I+ N + V
Sbjct: 6 LIGKNINYSESPEI-----HNNYYKKNNIPFFYKIFNLKQDQIDDFIKNLHKNNIKGFNV 60
Query: 82 TLPDRKPLYEYLTGVTDSADQIETV 106
T+P ++ + +YL + AD+I V
Sbjct: 61 TIPYKETILQYLNDIVYPADKIGAV 85
>sp|Q8GXR9|DHNA_ARATH NADH dehydrogenase C1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=NDC1 PE=1 SV=2
Length = 519
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 94 TGVTDSADQIETVIANDHVLNDGKIVETDGG------GDDLELDDISLIRACERPLKDRE 147
TG+ D+++T++ DH+ +G + GG G +E D + L E L
Sbjct: 151 TGIQFLRDRVKTLLPCDHLGVNGSEISVTGGTVLLESGFKIEYDWLVLALGAESKLDVVP 210
Query: 148 ALLECKGIDFYSVLVSSTRREEERQRIESQQRKDGLVAKNRLMGVDERGI 197
+E FY+ L + R E+ ++E + KDG K ++G G+
Sbjct: 211 GAMEL-AFPFYT-LEDAIRVNEKLSKLERKNFKDGSAIKVAVVGCGYAGV 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,603,258
Number of Sequences: 539616
Number of extensions: 6620401
Number of successful extensions: 62933
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 53273
Number of HSP's gapped (non-prelim): 6640
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)