Query 018907
Match_columns 349
No_of_seqs 133 out of 218
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v46_A Cell division control p 100.0 1.7E-46 5.9E-51 333.6 10.6 111 233-349 12-123 (170)
2 4h0a_A Uncharacterized protein 34.3 25 0.00085 33.4 3.3 31 312-342 88-119 (323)
3 4ifa_A Extracellular protein c 26.4 36 0.0012 32.7 2.9 47 294-341 78-129 (339)
4 2ejb_A Probable aromatic acid 25.9 36 0.0012 29.8 2.6 35 233-267 117-153 (189)
5 1qzu_A Hypothetical protein MD 25.1 33 0.0011 30.5 2.2 35 233-267 131-170 (206)
6 1sbz_A Probable aromatic acid 21.6 46 0.0016 29.4 2.4 35 233-267 113-149 (197)
7 3zqu_A Probable aromatic acid 21.2 44 0.0015 29.8 2.3 35 233-267 130-166 (209)
8 1g63_A Epidermin modifying enz 20.8 43 0.0015 29.1 2.0 35 233-267 106-145 (181)
9 1p3y_1 MRSD protein; flavoprot 20.4 39 0.0013 29.7 1.7 35 233-267 114-153 (194)
10 4a18_M RPL22, ribosomal protei 20.1 1.4E+02 0.0047 24.5 4.8 35 246-286 28-62 (118)
No 1
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A
Probab=100.00 E-value=1.7e-46 Score=333.62 Aligned_cols=111 Identities=30% Similarity=0.549 Sum_probs=102.8
Q ss_pred CCCcEEEecCCcccccchhhHHHHhhcCcccCChhhhhccCCCCCceEEEEeeecCCCCCeeeEEEEEcCCCCC-CCCCC
Q 018907 233 EGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPSTM-KSEDW 311 (349)
Q Consensus 233 ~~~PIIivPs~~tslitl~Nik~fLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~vvd~~~~~-~~~~W 311 (349)
+++|||||||++||||||+|||+|||||+|||+++..+ ..+++|+|+|++.+ .+.+++|+||||+.+| +||||
T Consensus 12 ~~~PIIiVp~s~sSlitm~NiK~FLedg~fv~~~~~~~----~~~~~v~I~r~~~~--~~~~~~f~VVD~~~~~tkpe~W 85 (170)
T 3v46_A 12 RKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLPS----VPNGLVNIEKNFER--ISRPIRFIIVDNTRMFTKPEYW 85 (170)
T ss_dssp CSCCEEECCCCTTCSSCTTTHHHHHHHCCCCCGGGSCC----CTTSEEEEEECCTT--SSSCEEEEEESSSTTCCSGGGG
T ss_pred CCCCEEEECCCccchhhHHHHHHHHhcCeecChhhccc----CCCCeEEEEEecCC--CCcceEEEEEEChHHcCCccCC
Confidence 67999999999999999999999999999999998643 25689999999864 2578999999999999 69999
Q ss_pred CeEEEEEeeCCccccCCCCCCCHHHhhccccEEEEeeC
Q 018907 312 DRVVAVFVLGKEWQFKEWPFKDHVEIFNKRIVTWGSME 349 (349)
Q Consensus 312 ~RVVaVf~~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~ 349 (349)
+|||||||+|++||||+|||++|++||++||||||+|+
T Consensus 86 ~RVVAVFv~G~~WQFk~w~~~~P~elF~~v~Gf~~~~~ 123 (170)
T 3v46_A 86 DRVVAIFTTGHTWQFNNYQWNSPQELFQRCKGYYFHFA 123 (170)
T ss_dssp GGEEEEECCSCGGGGTTSSSCSHHHHHHHSEEEEEEET
T ss_pred ceEEEEEeECchhhcCCCCCCChHHHhccceEEEEEec
Confidence 99999999999999999999999999999999999996
No 2
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=34.28 E-value=25 Score=33.40 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=26.4
Q ss_pred CeEEEEEeeCCccccCCCCCCCH-HHhhcccc
Q 018907 312 DRVVAVFVLGKEWQFKEWPFKDH-VEIFNKRI 342 (349)
Q Consensus 312 ~RVVaVf~~G~~WQFk~w~~~~p-~~lF~~v~ 342 (349)
++||+||++|..|..+++....+ .+||++..
T Consensus 88 ~kVv~iy~~g~~~~~~p~~iG~s~~~v~~~~~ 119 (323)
T 4h0a_A 88 EEIVSVYATGEKVNVSPLKIGQHSAEIFNHTS 119 (323)
T ss_dssp TEEEEEEEESSSCCCTTCCTTSBGGGTTTSCC
T ss_pred CEEEEEEECCCccccCCcccCCCHHHHHHhcC
Confidence 89999999999999999988755 56877653
No 3
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=26.44 E-value=36 Score=32.66 Aligned_cols=47 Identities=13% Similarity=0.299 Sum_probs=32.9
Q ss_pred eeEEEEEc-CCCCC---CCCCCCeEEEEEeeCCccccCCCCCCCH-HHhhccc
Q 018907 294 VKAYEVRD-KPSTM---KSEDWDRVVAVFVLGKEWQFKEWPFKDH-VEIFNKR 341 (349)
Q Consensus 294 ~~~f~vvd-~~~~~---~~~~W~RVVaVf~~G~~WQFk~w~~~~p-~~lF~~v 341 (349)
.+.+.|-+ +...+ .-++ ++||+|+++|+.+..++++...+ .+||++.
T Consensus 78 gy~w~vY~~~~~~y~~vgv~~-~kVv~~y~~g~~~~~~p~kiG~s~~~v~~~~ 129 (339)
T 4ifa_A 78 GYEWWVYNQDLAQYVQFGVAE-RKVVTAYVAGEQVKVPPYYINEKYEDVYKKN 129 (339)
T ss_dssp SCEEEEECSSGGGCEEEEEET-TEEEEEEECCTTSCBTTBCTTCBHHHHHHHS
T ss_pred CceEEEEcCCCCcEEEEEEEC-CEEEEEEECCCccccCCcccCCCHHHHHHhc
Confidence 35566654 32333 2223 99999999999999999888865 5688764
No 4
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=25.86 E-value=36 Score=29.77 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=27.7
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHhhcCccc-CChh
Q 018907 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGVYI-PTDV 267 (349)
Q Consensus 233 ~~~PIIivPs~~-tslitl~Nik~fLe~g~fv-~~~~ 267 (349)
.+.|+||+|+.+ ...+++-|+...-+.|.++ ||..
T Consensus 117 ~~~plvl~Pa~m~~~~~~~~N~~~L~~~G~~ivpp~~ 153 (189)
T 2ejb_A 117 ERVPLVLLVREAPYNEIHLENMLKITRMGGVVVPASP 153 (189)
T ss_dssp HTCCEEEEECCSSCCHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCeEEeCCCh
Confidence 358999999954 4789999999999988754 4544
No 5
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=25.07 E-value=33 Score=30.49 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=26.2
Q ss_pred CCCcEEEecCCc----ccccchhhHHHHhhcCccc-CChh
Q 018907 233 EGVPIILVPSAS----QTLITIYNVKEFLEDGVYI-PTDV 267 (349)
Q Consensus 233 ~~~PIIivPs~~----tslitl~Nik~fLe~g~fv-~~~~ 267 (349)
.+.||||+|+.- ...++.-|++.+-+.|.++ |+..
T Consensus 131 ~~~pvvlaPaMn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 170 (206)
T 1qzu_A 131 RSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVA 170 (206)
T ss_dssp TTSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC---
T ss_pred CCCCEEEEecCCccccCCHHHHHHHHHHHHCCCEEECCcc
Confidence 568999999765 3678899999999988755 4544
No 6
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=21.60 E-value=46 Score=29.40 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=27.4
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHhhcCccc-CChh
Q 018907 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGVYI-PTDV 267 (349)
Q Consensus 233 ~~~PIIivPs~~-tslitl~Nik~fLe~g~fv-~~~~ 267 (349)
.+.|+||+|+.+ ...+++-|+..+-+.|.++ ||..
T Consensus 113 ~~~plvl~Pa~m~~~~~~~~N~~~L~~~G~~ivpp~~ 149 (197)
T 1sbz_A 113 EGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMP 149 (197)
T ss_dssp HTCEEEEEECCSSBCHHHHHHHHHHHTTTCEECCCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCC
Confidence 458999999964 3679999999999988654 4544
No 7
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=21.20 E-value=44 Score=29.78 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=27.7
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHhhcCcc-cCChh
Q 018907 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGVY-IPTDV 267 (349)
Q Consensus 233 ~~~PIIivPs~~-tslitl~Nik~fLe~g~f-v~~~~ 267 (349)
.+.|+||+|+.+ .+.+++-|+...-+.|.. +||..
T Consensus 130 ~~~plvl~Paem~~~~~~~~Nm~~L~~~G~~iipp~~ 166 (209)
T 3zqu_A 130 ERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAP 166 (209)
T ss_dssp HTCCEEEEECCSSCCHHHHHHHHHHHHHTCEECCSCC
T ss_pred cCCcEEEEEcccccCHHHHHHHHHHHHCCCEEeCCCc
Confidence 358999999964 478999999999998874 45544
No 8
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=20.82 E-value=43 Score=29.12 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=27.6
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCccc-CChh
Q 018907 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDV 267 (349)
Q Consensus 233 ~~~PIIivPs~~t----slitl~Nik~fLe~g~fv-~~~~ 267 (349)
.+.|+||+|+.-+ ..++.-|+..+-+.|.++ ||..
T Consensus 106 ~~~pvvlaPamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 145 (181)
T 1g63_A 106 GYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDM 145 (181)
T ss_dssp TGGGEEEEECCCHHHHTCHHHHHHHHHHHTTTCEECCCEE
T ss_pred cCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCCEEECCCC
Confidence 4589999997753 578899999999988755 4544
No 9
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=20.44 E-value=39 Score=29.69 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCCcEEEecCCc----ccccchhhHHHHhhcCccc-CChh
Q 018907 233 EGVPIILVPSAS----QTLITIYNVKEFLEDGVYI-PTDV 267 (349)
Q Consensus 233 ~~~PIIivPs~~----tslitl~Nik~fLe~g~fv-~~~~ 267 (349)
.+.|+||+|+.- .+.+++-|+..+-+.|.++ ||..
T Consensus 114 ~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 153 (194)
T 1p3y_1 114 HPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVE 153 (194)
T ss_dssp SSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBC
T ss_pred cCCCEEEEECCChhhcCCHHHHHHHHHHHHCCCEEECCCC
Confidence 458999999844 3678999999999988754 4544
No 10
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M
Probab=20.14 E-value=1.4e+02 Score=24.53 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=24.2
Q ss_pred cccchhhHHHHhhcCcccCChhhhhccCCCCCceEEEEeee
Q 018907 246 TLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKF 286 (349)
Q Consensus 246 slitl~Nik~fLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~ 286 (349)
.++.+.|-.+||+|-.=|. .+ .+.-.+.|+|+|..
T Consensus 28 ~I~d~a~fekfL~erIKV~--gk----~gnLg~~V~i~~~~ 62 (118)
T 4a18_M 28 KVILIGEFAEFLKSKIKVG--GK----LGNLGENITISNDD 62 (118)
T ss_dssp TCCCHHHHHHHHHHHCCBT--TB----SSCCTTTEEEEECS
T ss_pred ceecHHHHHHHHHHHhhcc--Cc----ccccCCeEEEEEcC
Confidence 6899999999999866552 11 11244578898764
Done!