Query 018910
Match_columns 349
No_of_seqs 229 out of 1567
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:04:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0306 PitA Phosphate/sulphat 100.0 2.6E-41 5.7E-46 329.8 15.7 197 94-304 127-325 (326)
2 PF01384 PHO4: Phosphate trans 100.0 3.2E-38 7E-43 308.2 13.8 190 92-294 111-326 (326)
3 KOG2493 Na+/Pi symporter [Inor 100.0 1.7E-34 3.7E-39 290.1 2.8 158 137-304 340-508 (512)
4 COG0306 PitA Phosphate/sulphat 100.0 5.5E-31 1.2E-35 257.4 19.2 157 145-304 4-160 (326)
5 KOG2493 Na+/Pi symporter [Inor 100.0 2E-32 4.3E-37 275.3 8.3 196 142-343 24-219 (512)
6 PF01384 PHO4: Phosphate trans 100.0 4.3E-31 9.3E-36 258.1 14.3 161 160-326 1-163 (326)
7 TIGR00341 conserved hypothetic 83.2 32 0.0007 34.6 13.6 66 56-124 77-161 (325)
8 PRK10712 PTS system fructose-s 78.0 53 0.0012 35.4 14.0 91 105-197 348-450 (563)
9 PRK10478 putative PTS system f 60.6 2E+02 0.0044 29.4 14.2 77 103-181 132-216 (359)
10 COG3104 PTR2 Dipeptide/tripept 57.3 2.7E+02 0.0059 29.8 14.4 96 170-265 81-203 (498)
11 PRK10929 putative mechanosensi 47.9 92 0.002 36.4 9.3 27 236-263 887-913 (1109)
12 PRK10692 hypothetical protein; 43.1 89 0.0019 26.1 6.0 56 181-240 4-60 (92)
13 PF10762 DUF2583: Protein of u 37.8 1.1E+02 0.0024 25.4 5.7 57 181-240 4-60 (89)
14 PRK01844 hypothetical protein; 31.8 92 0.002 25.0 4.3 40 107-147 7-46 (72)
15 PF01235 Na_Ala_symp: Sodium:a 30.6 1.3E+02 0.0029 31.3 6.5 72 255-340 35-117 (416)
16 PF09512 ThiW: Thiamine-precur 29.1 4.4E+02 0.0096 23.9 8.8 80 250-342 65-144 (150)
17 PRK10263 DNA translocase FtsK; 28.6 6.8E+02 0.015 30.3 12.2 10 255-264 142-151 (1355)
18 PLN02953 phosphatidate cytidyl 27.3 52 0.0011 34.2 2.9 15 247-261 299-313 (403)
19 COG1288 Predicted membrane pro 26.3 1.1E+02 0.0024 32.4 5.0 170 139-341 301-477 (481)
20 PRK11281 hypothetical protein; 26.2 4.5E+02 0.0097 31.0 10.3 28 235-263 889-916 (1113)
21 PF06738 DUF1212: Protein of u 25.7 3.8E+02 0.0082 23.9 7.9 31 228-259 158-188 (193)
22 PF15461 BCD: Beta-carotene 15 24.7 3.1E+02 0.0066 26.4 7.5 72 270-343 148-225 (259)
23 PRK09765 PTS system 2-O-a-mann 23.7 9.8E+02 0.021 26.1 12.6 24 281-304 601-624 (631)
24 COG1914 MntH Mn2+ and Fe2+ tra 22.9 3.4E+02 0.0073 28.3 7.8 66 141-206 84-152 (416)
25 TIGR00835 agcS amino acid carr 21.5 9.5E+02 0.02 25.1 12.2 68 146-213 129-198 (425)
26 PRK10334 mechanosensitive chan 21.1 5.5E+02 0.012 25.1 8.6 25 238-263 83-107 (286)
27 TIGR01594 holin_lambda phage h 20.9 3.2E+02 0.007 23.1 6.0 31 228-260 54-84 (107)
28 PF03672 UPF0154: Uncharacteri 20.1 2.3E+02 0.005 22.2 4.5 36 111-147 4-39 (64)
No 1
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=329.79 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=174.8
Q ss_pred cccCchhhhHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q 018910 94 AGDDDLPGMAQAFHISSSTASAISICIALAALTLPFFMKSLGQGLDIKTKLLSHATLLFGFYMAWNIGANDVANAMGTSV 173 (349)
Q Consensus 94 ~~~~~l~ki~~~~~~Sp~~~~~i~~~l~~lv~~~~~~~~~~~~~~~~~~~~f~~l~iisA~~~AFs~GANDvaNa~G~iV 173 (349)
++|+.+.+++.+|++||++++.+++++...+. +..++ .++..+.|++||++|+++||++||+||+||+||++||++
T Consensus 127 ~~~~~~~~Iv~swvlsPii~~~ia~~l~~~~~---~~~~~-~~~~~~~~~~~r~l~i~sa~~~aF~hGaNdvanaiGpi~ 202 (326)
T COG0306 127 VDWGVLGKIVASWVLSPILGGVLAYLLYSLLR---RLIVG-KDGKRKVERIFRILLIISASLVAFAHGANDVANAIGPLV 202 (326)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc-cccchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHH
Confidence 78999999999999999999655555433221 21221 136678899999999999999999999999999999999
Q ss_pred hcC--cchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceeccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCccchh
Q 018910 174 GSG--ALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQVASYYGWPVSTT 251 (349)
Q Consensus 174 gsg--~l~~~~alllaai~i~lGall~G~rVi~TvG~~I~~l~~~~g~p~~~~~a~~aAllaAai~vliaT~lGiPVSTT 251 (349)
+.. ...|.|++++|++++++|++++|+||+||+|+||++++|.++ +|+++++++++.+++.+|+|+|||
T Consensus 203 ~~~~~~~~~~~v~~~g~~~i~lG~~~~g~Rvi~TvG~kIt~L~p~~g---------fsA~~~sa~~v~~as~~GlPvStT 273 (326)
T COG0306 203 AVLISSLPPFWVLVLGGIALALGTLTGGPRVIETVGKKITELTPSRG---------FSAQLSSAITVLLASLLGLPVSTT 273 (326)
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHHccHHHHHHHhhhhcccCcchh---------HHHHHHHHHHHHHHHHcCCCcccc
Confidence 887 488999999999999999999999999999999999987766 899999999999999999999999
Q ss_pred hHhhhHHHHHHHhhCCCCcccHHhHhHhhhhhhhchhHHHHHHHHHHHHHHHH
Q 018910 252 HCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRV 304 (349)
Q Consensus 252 haiVGsIiGvGla~~G~~~V~w~~l~~Iv~sWilTPpia~iis~ll~~ll~~i 304 (349)
|+++||++|+|++. +.+.+||+.+++|+.+|++|||+++++++++|++++.+
T Consensus 274 ~~~vgaI~GvG~~~-~~~~v~~~~~~~Iv~aWvvT~p~a~~ls~~~~~~~~~~ 325 (326)
T COG0306 274 HTLVGAVLGVGLAL-AGGAVNWKVIKNIVLAWVVTLPAAALLSALLYWLLLFI 325 (326)
T ss_pred eeeeeeeeecchhh-ccCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999874 44689999999999999999999999999999998754
No 2
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=100.00 E-value=3.2e-38 Score=308.17 Aligned_cols=190 Identities=26% Similarity=0.330 Sum_probs=164.5
Q ss_pred cccccC-chhhhHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHhc------CCc-------hhhhhHHHHHHHHHHHHHH
Q 018910 92 TEAGDD-DLPGMAQAFHISSSTASAISICIALAALTLPFFMKSLG------QGL-------DIKTKLLSHATLLFGFYMA 157 (349)
Q Consensus 92 ~~~~~~-~l~ki~~~~~~Sp~~~~~i~~~l~~lv~~~~~~~~~~~------~~~-------~~~~~~f~~l~iisA~~~A 157 (349)
+.+||+ .+.|++.+|++||++++.++.++.+++. ++.++.+ ... .+.++.|+.+|++++|++|
T Consensus 111 ~~v~w~~~~~~I~~~wv~sPlia~~~a~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~sa~~~s 187 (326)
T PF01384_consen 111 SAVNWSKGLLKIVLSWVISPLIAFILAYILYRLIR---RIFLRRKNPVKRALRPLPILFFDPRVEKIFRFLQILSAAFVS 187 (326)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 468999 5999999999999999777766655442 2122110 011 3588999999999999999
Q ss_pred HHHhhhhHhHHHHHHHhc------C------cchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceeccccCCchhHHHH
Q 018910 158 WNIGANDVANAMGTSVGS------G------ALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFA 225 (349)
Q Consensus 158 Fs~GANDvaNa~G~iVgs------g------~l~~~~alllaai~i~lGall~G~rVi~TvG~~I~~l~~~~g~p~~~~~ 225 (349)
|+||+||+||++||++.. + ...|.|+++++++++++|++++|+|++||+|++|++++|.++
T Consensus 188 fahGaND~~naig~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~i~~G~~~~G~rv~~tvG~~it~l~p~~g------- 260 (326)
T PF01384_consen 188 FAHGANDVANAIGPLAAILIIYNTGSVNSGKAEIPWWILLLGGLAIALGTLTGGWRVIRTVGEKITKLDPSRG------- 260 (326)
T ss_pred HHHHhccHHHHHHHHHHHHHHhhcCCcccccccChHHHHHHHHHHHHHHHHHhhHHHHHHhccchhccCcchh-------
Confidence 999999999999999643 2 234899999999999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHHhhCCccchhhHhhhHHHHHHHhhCCCCcccHHhHhHhhhhhhhchhHHHHHH
Q 018910 226 GLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVS 294 (349)
Q Consensus 226 a~~aAllaAai~vliaT~lGiPVSTThaiVGsIiGvGla~~G~~~V~w~~l~~Iv~sWilTPpia~iis 294 (349)
+++++++++++++++.+|+|+||||+++||++|+|++ +|.+.|||+.+++|+.+|++|||+|+++|
T Consensus 261 --~~a~l~sa~~v~~as~~GlPvStT~~~vgaivGvG~~-~~~~~V~w~~~~~I~~~Wi~T~p~a~~~S 326 (326)
T PF01384_consen 261 --FSAQLSSALTVLIASLLGLPVSTTHAIVGAIVGVGLA-RGFRSVNWKTVRKIVLGWILTLPIAALLS 326 (326)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcchhheeeeeeEeeeee-cCCCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999998 57899999999999999999999999874
No 3
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=290.08 Aligned_cols=158 Identities=27% Similarity=0.379 Sum_probs=147.0
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhc-----------CcchHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 018910 137 GLDIKTKLLSHATLLFGFYMAWNIGANDVANAMGTSVGS-----------GALTLRQAVLTAAVLEFSGALLMGTHVTST 205 (349)
Q Consensus 137 ~~~~~~~~f~~l~iisA~~~AFs~GANDvaNa~G~iVgs-----------g~l~~~~alllaai~i~lGall~G~rVi~T 205 (349)
+.++++++|..+|+++||+++|+||+||++|++||+++. +.-+|.|.++.+++++.+|.+++|+||++|
T Consensus 340 d~e~v~~lFs~lQvlTACF~sFAHGaNDVsNAIgPL~Al~~iy~~g~v~~k~~~Pi~vLlyG~~aicvGlw~~G~rVIkT 419 (512)
T KOG2493|consen 340 DSEEVSRLFSTLQVLTACFASFAHGANDVSNAIGPLVALYLIYRTGYVEQKEETPIYVLLYGGFAICVGLWTLGHRVIKT 419 (512)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHHHHHcCCccceeccceeeeecccceeeeeehhhhHHHHHH
Confidence 445788999999999999999999999999999999642 334688999999999999999999999999
Q ss_pred hhcCceeccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCccchhhHhhhHHHHHHHhhCCCCcccHHhHhHhhhhhhh
Q 018910 206 MQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVI 285 (349)
Q Consensus 206 vG~~I~~l~~~~g~p~~~~~a~~aAllaAai~vliaT~lGiPVSTThaiVGsIiGvGla~~G~~~V~w~~l~~Iv~sWil 285 (349)
+|+++++++|-+| ||+++++|+++++|+.+|+|+|+||+.|||+++||++ |+.+.|+|+.+++|..+|++
T Consensus 420 vG~kmt~itPasG---------FsIEfgaA~TvLiAsklGlPiStThc~VGsVvaVG~~-rs~~~V~w~~fR~I~~sW~v 489 (512)
T KOG2493|consen 420 VGKKMTEITPASG---------FSIEFGAAITVLIASKLGLPISTTHCLVGSVVAVGLA-RSLKGVDWRTFRNIFFSWFV 489 (512)
T ss_pred HhhcccccCCCcc---------ceeeHHHHHHHHHHHhcCCCcccceeeeeeEEEEEEe-ccCCCcchHHHHHhHhhhee
Confidence 9999999976666 8999999999999999999999999999999999999 57789999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 018910 286 SPILGALVSFLVYKCIRRV 304 (349)
Q Consensus 286 TPpia~iis~ll~~ll~~i 304 (349)
|.|+++++|.+...+++..
T Consensus 490 TlPvsglisa~~m~Il~~~ 508 (512)
T KOG2493|consen 490 TLPVSGLISAGIMWILQYA 508 (512)
T ss_pred ecchHHHHHHHHHHHHHHH
Confidence 9999999999999999887
No 4
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.5e-31 Score=257.42 Aligned_cols=157 Identities=48% Similarity=0.833 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceeccccCCchhHHH
Q 018910 145 LSHATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLF 224 (349)
Q Consensus 145 f~~l~iisA~~~AFs~GANDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TvG~~I~~l~~~~g~p~~~~ 224 (349)
+..+.++.+++|+|++|+||++|+|||.+++|+++++++++++++++++|+++.|.+|.+|+++++++.+.++. ....
T Consensus 4 l~~~~li~~l~~a~~iGand~ana~gtaVgs~alt~~~Av~laavf~f~Ga~l~g~~V~~TI~~~iv~~~~~~~--~~~~ 81 (326)
T COG0306 4 LLVLALIAALFFAFNIGANDTANAVGTAVGSGALTPRQAVLLAAVFNFLGALLGGGNVAETIGSGIVDPGLLND--SLTP 81 (326)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhhccCCccHHHHHHHHHHHHHHHHHHcCccHHHHHhcCCCCchhccc--hhhH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999766542 4556
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCccchhhHhhhHHHHHHHhhCCCCcccHHhHhHhhhhhhhchhHHHHHHHHHHHHHHHH
Q 018910 225 AGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRV 304 (349)
Q Consensus 225 ~a~~aAllaAai~vliaT~lGiPVSTThaiVGsIiGvGla~~G~~~V~w~~l~~Iv~sWilTPpia~iis~ll~~ll~~i 304 (349)
.+++++++++++|+++++++|+|+||||+++|+++|+|++..+. .++|+.+.+|+.+|+++|++++.++|++|..+++.
T Consensus 82 ~~~~aaLlaa~~w~~ia~~~GiP~StshaiiGaiiG~gla~~~~-~~~~~~~~~Iv~swvlsPii~~~ia~~l~~~~~~~ 160 (326)
T COG0306 82 AGVLAALLAAILWNLIATYLGIPVSTSHALIGAIIGAGLALGGG-VVDWGVLGKIVASWVLSPILGGVLAYLLYSLLRRL 160 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999997554 68999999999999999999999999999999988
No 5
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-32 Score=275.26 Aligned_cols=196 Identities=34% Similarity=0.580 Sum_probs=188.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceeccccCCchh
Q 018910 142 TKLLSHATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDT 221 (349)
Q Consensus 142 ~~~f~~l~iisA~~~AFs~GANDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TvG~~I~~l~~~~g~p~ 221 (349)
-.+..+++++.|++++|++||||+||+.|+.+++|.++.+|+.+++++++.+|+.+.|++|.+|+.+++++.+.++.+|.
T Consensus 24 ~~w~livg~i~afll~f~mGANDvaNsfgtSVgSgvltl~QA~iLAsife~lGsvl~G~~V~dt~r~gVId~s~y~~~~~ 103 (512)
T KOG2493|consen 24 FLWALIVGFIVAFLLAFGMGANDVANSFGTSVGSGVLTLKQAYILASIFETLGSVLLGASVTDTMRKGVIDFSIYNDTPK 103 (512)
T ss_pred hHHHHHHHHHHHHHHhcccCccccccccccccccCceehHHHHHHHHHHHHHHHHHccchhhhhHHhceeehHHhcCCHH
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCccchhhHhhhHHHHHHHhhCCCCcccHHhHhHhhhhhhhchhHHHHHHHHHHHHH
Q 018910 222 LLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCI 301 (349)
Q Consensus 222 ~~~~a~~aAllaAai~vliaT~lGiPVSTThaiVGsIiGvGla~~G~~~V~w~~l~~Iv~sWilTPpia~iis~ll~~ll 301 (349)
..+.++.+++.+.+.|.++||.+++|+|+||+++|+-+|.+++.+|.+++.|..+.+|+.+|+++|.++++++.++|.++
T Consensus 104 ~lmlgqva~L~G~a~W~l~At~~~~PvSttHsiVgatigfs~~~~g~~Gi~w~~v~~iv~swfiSpilsg~~s~ilf~~v 183 (512)
T KOG2493|consen 104 TLMLGQVAALFGSAAWLLVATFLKLPVSTTHSIVGATIGFSLVARGFNGIVWMEVIKIVASWFISPILSGIISAILFFLV 183 (512)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCccceeeeeeheeeeeeeeccccceeehhhHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccChhhhhhhcchhHHHHHHHHHHHHHHHHHh
Q 018910 302 RRVCAFTLWTCTNNARCLASNMALPWLVKFLKFICLCLWFLK 343 (349)
Q Consensus 302 ~~i~~~~i~~~~~~~~~a~~~~~~P~~~~~~~~~~~~~~~~k 343 (349)
+.. ++|++||.++.+ +.+|.++.+++.+-.+.++||
T Consensus 184 ~~s----vl~~~~p~~~gl--~~lp~~y~~~~~~n~f~ivy~ 219 (512)
T KOG2493|consen 184 DHS----VLRAANPVKNGL--RLLPVFYFITVSINVFGIVYD 219 (512)
T ss_pred HHH----HHHhcCchhhch--hhcchhhhhhhhheeeeEEec
Confidence 999 999999999999 999999999988887777776
No 6
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=99.97 E-value=4.3e-31 Score=258.11 Aligned_cols=161 Identities=46% Similarity=0.795 Sum_probs=151.4
Q ss_pred HhhhhHhHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceeccccC-CchhHHHHHHHHHHHHHHHHH
Q 018910 160 IGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQ-GKDTLLFAGLLSSLAAAGTWL 238 (349)
Q Consensus 160 ~GANDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TvG~~I~~l~~~~-g~p~~~~~a~~aAllaAai~v 238 (349)
+|+||++|++|+.|++|.++++++++++++++++|+++.|.+|.+|++++|++.+.++ ++|...+.+++|+++++++|+
T Consensus 1 ~GaND~an~~gt~Vgs~al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~~~~~~~~~al~~a~iw~ 80 (326)
T PF01384_consen 1 NGANDAANSFGTAVGSRALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQILMIGMLAALLAAAIWL 80 (326)
T ss_pred CCccchHHHHHHHHhcCccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999998886 678888888999999999999
Q ss_pred HHHHhhCCccchhhHhhhHHHHHHHhhCCCCcccHH-hHhHhhhhhhhchhHHHHHHHHHHHHHHHHhhcccccccChhh
Q 018910 239 QVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWS-SLARVTSSWVISPILGALVSFLVYKCIRRVCAFTLWTCTNNAR 317 (349)
Q Consensus 239 liaT~lGiPVSTThaiVGsIiGvGla~~G~~~V~w~-~l~~Iv~sWilTPpia~iis~ll~~ll~~i~~~~i~~~~~~~~ 317 (349)
+++|++|+|+|+||+++|+++|+|++.+|.+.+||. .+.+|+.+|+++|++++++++++|++++++ +.+++++.+
T Consensus 81 ~i~t~~glPvStThalvGal~G~~l~~~g~~~v~w~~~~~~I~~~wv~sPlia~~~a~~l~~~~~~~----~~~~~~~~~ 156 (326)
T PF01384_consen 81 LIATWLGLPVSTTHALVGALIGAGLASGGFSAVNWSKGLLKIVLSWVISPLIAFILAYILYRLIRRI----FLRRKNPVK 156 (326)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHH
Confidence 999999999999999999999999998888999999 599999999999999999999999999999 788777777
Q ss_pred hhhhcchhH
Q 018910 318 CLASNMALP 326 (349)
Q Consensus 318 ~a~~~~~~P 326 (349)
+++ +..|
T Consensus 157 ~~~--~~~~ 163 (326)
T PF01384_consen 157 RAL--RPLP 163 (326)
T ss_pred hhh--hccc
Confidence 777 5555
No 7
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=83.19 E-value=32 Score=34.64 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=36.2
Q ss_pred cccccchhhhhhccCccccccccccccccCCCCCccccccc-------------------CchhhhHHHHhcChhHHHHH
Q 018910 56 HSFASISSFAEAEGEGEEEQNEGLQVQKHHHDEPTKTEAGD-------------------DDLPGMAQAFHISSSTASAI 116 (349)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~l~ki~~~~~~Sp~~~~~i 116 (349)
-|-.++|.++|.++||+.+.-..-|+.++-+|+. .+++ +-..-++-+++++|+.|=..
T Consensus 77 ~~e~v~s~~~~~~e~~~~~~v~~eEL~~~~~~~s---~~~~~yl~~l~lA~iIA~iGLl~nS~avIIGAMlIaPlmgPi~ 153 (325)
T TIGR00341 77 KPEFVISPASRREEAEEKTSLPVEELYEMAKSYA---SLNKGRSVVTILAGIIALSGLIMNNAVILIGAMIIAPLLGPIH 153 (325)
T ss_pred ccceecChhhhhhhccccCCcCHHHHHHHHHhhC---cCcHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhHHHHH
Confidence 6778888777654443333222233333433333 2233 23335677788888888776
Q ss_pred HHHHHHHH
Q 018910 117 SICIALAA 124 (349)
Q Consensus 117 ~~~l~~lv 124 (349)
++.+|...
T Consensus 154 a~a~g~~~ 161 (325)
T TIGR00341 154 GFAVNLSV 161 (325)
T ss_pred HHHHHHHc
Confidence 66665543
No 8
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=78.00 E-value=53 Score=35.42 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHhcChhHHHHHHHHHHHHHHHHH--HHHHHhc---CCchhhhhHHHHHHHHHHHHHHHHHhh--hhHhHHHHHHH-hcC
Q 018910 105 AFHISSSTASAISICIALAALTLP--FFMKSLG---QGLDIKTKLLSHATLLFGFYMAWNIGA--NDVANAMGTSV-GSG 176 (349)
Q Consensus 105 ~~~~Sp~~~~~i~~~l~~lv~~~~--~~~~~~~---~~~~~~~~~f~~l~iisA~~~AFs~GA--NDvaNa~G~iV-gsg 176 (349)
+.++-|+++.++...+.+.+.--+ ++...+. ....+.+ -..+..+.+++++|..|. |=++..++.-. ..+
T Consensus 348 piliiPllt~li~~~l~~~viGpp~~~l~~~l~~~l~~l~~~~--~~l~G~ilGam~~fdmggpvnkaa~~~~~~~la~~ 425 (563)
T PRK10712 348 PILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTAN--AVLLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQ 425 (563)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHhc
Confidence 456788888776666655432111 3232221 1112112 234566778888887665 55666666553 333
Q ss_pred cchHHHHHHHH----HHHHHHHHHh
Q 018910 177 ALTLRQAVLTA----AVLEFSGALL 197 (349)
Q Consensus 177 ~l~~~~allla----ai~i~lGall 197 (349)
..++..+...+ -+++++++++
T Consensus 426 g~~p~~a~~~a~~vpp~G~alA~~l 450 (563)
T PRK10712 426 TYAPMAAIMAAGMVPPLAMGLATMV 450 (563)
T ss_pred CchHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444433333 3445555554
No 9
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=60.64 E-value=2e+02 Score=29.41 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=42.8
Q ss_pred HHHHhcChhHHHHHHHHHHHHHHHHH--HHHHHhc---CCchhhhhHHHHHHHHHHHHHHHHHhh--hhHhHHHHHHHh-
Q 018910 103 AQAFHISSSTASAISICIALAALTLP--FFMKSLG---QGLDIKTKLLSHATLLFGFYMAWNIGA--NDVANAMGTSVG- 174 (349)
Q Consensus 103 ~~~~~~Sp~~~~~i~~~l~~lv~~~~--~~~~~~~---~~~~~~~~~f~~l~iisA~~~AFs~GA--NDvaNa~G~iVg- 174 (349)
+.+.++-|+++..+..++.+.+.--+ ++...+. .+....+ -..+..+.++.++|..|. |-+|-+++...-
T Consensus 132 ~~piliiP~l~~li~g~lm~~vig~pi~~l~~~l~~~L~~l~~~~--~~~lG~ilG~m~afDmGGPvNK~A~~f~~~~~~ 209 (359)
T PRK10478 132 VMPIFIIPIVGTLITAGIMMWGLGEPIGALTNSLTQWLQGMQQGS--IVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVA 209 (359)
T ss_pred hcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHh
Confidence 44567778877665554444221111 2222111 1222222 334778899999999996 888888887643
Q ss_pred cCcchHH
Q 018910 175 SGALTLR 181 (349)
Q Consensus 175 sg~l~~~ 181 (349)
.+...|.
T Consensus 210 ~g~~~~~ 216 (359)
T PRK10478 210 QGVYTVV 216 (359)
T ss_pred cCCchHH
Confidence 3433443
No 10
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=57.31 E-value=2.7e+02 Score=29.83 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=57.2
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhhhHH------------HHHHhhcCceeccccC--------CchhH--HH---
Q 018910 170 GTSVGSGALTLRQAVLTAAVLEFSGALLMGTH------------VTSTMQKGILVTSVFQ--------GKDTL--LF--- 224 (349)
Q Consensus 170 G~iVgsg~l~~~~alllaai~i~lGall~G~r------------Vi~TvG~~I~~l~~~~--------g~p~~--~~--- 224 (349)
|-.++-+.+-.+.++.++|+.+.+|-+..+.. +.-.+|+|..|.++-. ++|.| ++
T Consensus 81 GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~f 160 (498)
T COG3104 81 GGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLF 160 (498)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEE
Confidence 33334445556677888888888886555443 2234777777754311 11211 10
Q ss_pred --HHHHHHHHHHHHHHHHHHhhCCccchhhHhhhHHHHHHHhh
Q 018910 225 --AGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVY 265 (349)
Q Consensus 225 --~a~~aAllaAai~vliaT~lGiPVSTThaiVGsIiGvGla~ 265 (349)
+.-..++.+-.++-.++..+|.++--.-+-+|-.+|.-...
T Consensus 161 Y~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 161 YMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred EEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 00123445555666778889988888888888888887754
No 11
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=47.89 E-value=92 Score=36.40 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=18.9
Q ss_pred HHHHHHHhhCCccchhhHhhhHHHHHHH
Q 018910 236 TWLQVASYYGWPVSTTHCIVGSMVGFGL 263 (349)
Q Consensus 236 i~vliaT~lGiPVSTThaiVGsIiGvGl 263 (349)
..+.+.+.+|++.+.-.+++|++ |+|+
T Consensus 887 g~l~~L~~lGI~~t~l~al~gal-GVgI 913 (1109)
T PRK10929 887 GGLVGFSMIGIEWSKLQWLVAAL-GVGL 913 (1109)
T ss_pred HHHHHHHHcCCChHHHHHHHHHH-HHHH
Confidence 33456677999999888877774 5444
No 12
>PRK10692 hypothetical protein; Provisional
Probab=43.09 E-value=89 Score=26.05 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCceeccccCCchhHH-HHHHHHHHHHHHHHHHH
Q 018910 181 RQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLL-FAGLLSSLAAAGTWLQV 240 (349)
Q Consensus 181 ~~alllaai~i~lGall~G~rVi~TvG~~I~~l~~~~g~p~~~-~~a~~aAllaAai~vli 240 (349)
+.+.+++-++|.+|.++.-..|.-++-+.+.+++.. ... -.++++..++|.+|+..
T Consensus 4 k~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp----~~~~~gal~~IFiGAllWL~G 60 (92)
T PRK10692 4 KNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLP----QFFAHGALLSIFVGALLWLAG 60 (92)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCch----HHHHhhHHHHHHHHHHHHHhc
Confidence 346678888999998888777888888888887632 221 12456666666666643
No 13
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=37.76 E-value=1.1e+02 Score=25.42 Aligned_cols=57 Identities=25% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCceeccccCCchhHHHHHHHHHHHHHHHHHHH
Q 018910 181 RQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQV 240 (349)
Q Consensus 181 ~~alllaai~i~lGall~G~rVi~TvG~~I~~l~~~~g~p~~~~~a~~aAllaAai~vli 240 (349)
+.+.+++-+++.+|.++.-..|.-++-+.+.+++..+- ..-.++++..++|.+|+..
T Consensus 4 k~a~~~GN~lMglGmv~Mv~gigysi~~~~~~L~Lp~~---~~~gal~~IFiGAllWL~G 60 (89)
T PF10762_consen 4 KNAFLLGNVLMGLGMVVMVGGIGYSILSQIPQLGLPQF---LAHGALFSIFIGALLWLVG 60 (89)
T ss_pred hhhHHHhhHHHHHhHHHHHHhHHHHHHHhcccCCCcHH---HHhhHHHHHHHHHHHHHhc
Confidence 34667888889999888877777777777877764321 1112456666666666643
No 14
>PRK01844 hypothetical protein; Provisional
Probab=31.75 E-value=92 Score=24.97 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=26.2
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHH
Q 018910 107 HISSSTASAISICIALAALTLPFFMKSLGQGLDIKTKLLSH 147 (349)
Q Consensus 107 ~~Sp~~~~~i~~~l~~lv~~~~~~~~~~~~~~~~~~~~f~~ 147 (349)
++-+++++++|+++||.+... ++-+.+..+|+-.++.+|.
T Consensus 7 I~l~I~~li~G~~~Gff~ark-~~~k~lk~NPpine~mir~ 46 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARK-YMMNYLQKNPPINEQMLKM 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 445677888888888765422 4455555777777777764
No 15
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=30.64 E-value=1.3e+02 Score=31.31 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhCCCCcccHHhHhHhhhhhhhchhHHHHHHHHHHHHHHHHhhcccccccChh-----------hhhhhcc
Q 018910 255 VGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRVCAFTLWTCTNNA-----------RCLASNM 323 (349)
Q Consensus 255 VGsIiGvGla~~G~~~V~w~~l~~Iv~sWilTPpia~iis~ll~~ll~~i~~~~i~~~~~~~-----------~~a~~~~ 323 (349)
+|.|.|+..+ +..+.=+-+++.|+... +++...|.=-.+-.+. |++|+. ++.++++
T Consensus 35 ~GNI~GVa~A------I~~GGPGAiFWMWi~a~-~Gmatk~~E~~La~~y------R~~~~~G~~~GGP~yyi~~gl~~k 101 (416)
T PF01235_consen 35 TGNIAGVATA------IAIGGPGAIFWMWISAL-LGMATKYAEVTLAQKY------REKDEDGEYRGGPMYYIEKGLGSK 101 (416)
T ss_pred cchHHHHHHH------HHhhchhHHHHHHHHHH-HHHHHHHHHHHHHHHh------eEECCCCCEeecHHHHHHHHhccc
Q ss_pred hhHHHHHHHHHHHHHHH
Q 018910 324 ALPWLVKFLKFICLCLW 340 (349)
Q Consensus 324 ~~P~~~~~~~~~~~~~~ 340 (349)
++++++++. .++.+..
T Consensus 102 ~la~~fai~-~~~~~~~ 117 (416)
T PF01235_consen 102 WLAILFAIF-LIIAFGI 117 (416)
T ss_pred hHHHHHHHH-HHHHHHh
No 16
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=29.12 E-value=4.4e+02 Score=23.93 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=38.7
Q ss_pred hhhHhhhHHHHHHHhhCCCCcccHHhHhHhhhhhhhchhHHHHHHHHHHHHHHHHhhcccccccChhhhhhhcchhHHHH
Q 018910 250 TTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRVCAFTLWTCTNNARCLASNMALPWLV 329 (349)
Q Consensus 250 TThaiVGsIiGvGla~~G~~~V~w~~l~~Iv~sWilTPpia~iis~ll~~ll~~i~~~~i~~~~~~~~~a~~~~~~P~~~ 329 (349)
|-.+.-||++|+=++ | +-.+..+++..+|+-=++-.++++.++-+.+-.. +..++... -. +.+|+..
T Consensus 65 t~lAfPGsm~GA~la--G---llyr~~~k~~~a~lGEviGTGiIGal~sypva~~----~~g~~~~~--~~--~v~~F~~ 131 (150)
T PF09512_consen 65 TLLAFPGSMFGALLA--G---LLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKL----FMGKEAAL--FF--FVPPFLI 131 (150)
T ss_pred CHHHhccchHHHHHH--H---HHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHH----HhCCchhh--hh--hHHHHHH
Confidence 344555666665443 1 1223345556666666666666665554444443 34433222 33 5566655
Q ss_pred HHHHHHHHHHHHH
Q 018910 330 KFLKFICLCLWFL 342 (349)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (349)
.-....++-++++
T Consensus 132 St~~Ga~ig~~~l 144 (150)
T PF09512_consen 132 STLIGAIIGYILL 144 (150)
T ss_pred HHHHHHHHHHHHH
Confidence 5444444444433
No 17
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.63 E-value=6.8e+02 Score=30.27 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=8.4
Q ss_pred hhHHHHHHHh
Q 018910 255 VGSMVGFGLV 264 (349)
Q Consensus 255 VGsIiGvGla 264 (349)
.|+++|..+.
T Consensus 142 gGGIIG~lLs 151 (1355)
T PRK10263 142 SGGVIGSLLS 151 (1355)
T ss_pred ccchHHHHHH
Confidence 5999998886
No 18
>PLN02953 phosphatidate cytidylyltransferase
Probab=27.30 E-value=52 Score=34.17 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=8.3
Q ss_pred ccchhhHhhhHHHHH
Q 018910 247 PVSTTHCIVGSMVGF 261 (349)
Q Consensus 247 PVSTThaiVGsIiGv 261 (349)
++|---+.-|.+-|+
T Consensus 299 ~ISPkKTwEG~iGGi 313 (403)
T PLN02953 299 SISPKKTWEGTFVGL 313 (403)
T ss_pred cCCCCCeeeeehhHH
Confidence 566666655555443
No 19
>COG1288 Predicted membrane protein [Function unknown]
Probab=26.28 E-value=1.1e+02 Score=32.42 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=81.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceeccccCC
Q 018910 139 DIKTKLLSHATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQG 218 (349)
Q Consensus 139 ~~~~~~f~~l~iisA~~~AFs~GANDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TvG~~I~~l~~~~g 218 (349)
++....|....++.+..- ..|.||..+++-. |+-+...+.++.+++=.+=...-.+.+.+|+=+...+. .++
T Consensus 301 ~eiA~~Fl~mgIiig~I~--glse~~~~~sF~~----Ga~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~--lsg 372 (481)
T COG1288 301 PEIAAQFLAMGIIIGLIG--GLSENDIASSFIE----GASDLLGVALIIGLARGINLIMDDGMILDTILNYLASL--LSG 372 (481)
T ss_pred HHHHHHHHHHHHHHHHHh--ccchhHHHHHHHH----hHHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHH--Hhc
Confidence 344556666666666655 6799999988743 33333333334344333333445556666654332221 111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhC--CccchhhHhhhHHHHHHHhhCCCCcccHHhHh---Hh--hhhhhhchhHHH
Q 018910 219 KDTLLFAGLLSSLAAAGTWLQVASYYG--WPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLA---RV--TSSWVISPILGA 291 (349)
Q Consensus 219 ~p~~~~~a~~aAllaAai~vliaT~lG--iPVSTThaiVGsIiGvGla~~G~~~V~w~~l~---~I--v~sWilTPpia~ 291 (349)
++..+.+.....+...++ +|.|+=|+...=-+=+=++. .-.+....+. +. -..=+++|--+.
T Consensus 373 ---------ls~~~f~i~mli~~~~l~f~VpS~SG~A~ltMPImAPLaD--~vgv~RqvvV~Afq~g~G~~n~I~PTSg~ 441 (481)
T COG1288 373 ---------LSSAVFAIGMLIFQALLNFFVPSGSGLAVLTMPIMAPLAD--LVGVPRQVVVLAFQLGDGFSNIIAPTSGL 441 (481)
T ss_pred ---------CCHHHHHHHHHHHHHHheEEEeCCCchhHhhchhhhhhHH--hcCCCHHHhhhhhhhcchhhheecCchHH
Confidence 122222333334444555 78888777543222222221 1122222110 00 012356665444
Q ss_pred HHHHHHHHHHHHHhhcccccccChhhhhhhcchhHHHHHHHHHHHHHHHH
Q 018910 292 LVSFLVYKCIRRVCAFTLWTCTNNARCLASNMALPWLVKFLKFICLCLWF 341 (349)
Q Consensus 292 iis~ll~~ll~~i~~~~i~~~~~~~~~a~~~~~~P~~~~~~~~~~~~~~~ 341 (349)
+.+ .+.. . +-+..++-+ ...|++...++..|.+.++
T Consensus 442 ~ma-----~La~------~-~i~y~~W~K--fv~pl~~i~~li~~~~lii 477 (481)
T COG1288 442 LMA-----TLAM------A-RVPYGTWLK--FVAPLLGILFLISSVVLII 477 (481)
T ss_pred HHH-----HHHH------c-cCChhHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 333 2221 1 234567777 8888888666665555544
No 20
>PRK11281 hypothetical protein; Provisional
Probab=26.21 E-value=4.5e+02 Score=31.02 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCccchhhHhhhHHHHHHH
Q 018910 235 GTWLQVASYYGWPVSTTHCIVGSMVGFGL 263 (349)
Q Consensus 235 ai~vliaT~lGiPVSTThaiVGsIiGvGl 263 (349)
...+.+...+|++.|.-.++.|+ +|+|+
T Consensus 889 i~iliaL~~lGi~~t~L~~l~ga-LgVgI 916 (1113)
T PRK11281 889 VGAVTAFSTLGVSWDKLQWLVAA-LSVGL 916 (1113)
T ss_pred HHHHHHHHHcCCChHHHHHHHHH-HHHHH
Confidence 34455667889998887776655 45654
No 21
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=25.67 E-value=3.8e+02 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhCCccchhhHhhhHHH
Q 018910 228 LSSLAAAGTWLQVASYYGWPVSTTHCIVGSMV 259 (349)
Q Consensus 228 ~aAllaAai~vliaT~lGiPVSTThaiVGsIi 259 (349)
+++.+++.+ ..+...+|.|.+...+++|+++
T Consensus 158 ~aa~~~~~~-a~~~~~~~~~~~~~~vii~~i~ 188 (193)
T PF06738_consen 158 IAAFLASLL-AALLARLGPPFSPSAVIIGAIM 188 (193)
T ss_pred HHHHHHHHH-HHHHHHhCCCcCHHHHHHHHHh
Confidence 344444433 4445578999999999999986
No 22
>PF15461 BCD: Beta-carotene 15,15'-dioxygenase
Probab=24.72 E-value=3.1e+02 Score=26.42 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=42.3
Q ss_pred cccHHhHhH----hhhhhhhchhHHHHHHHHHHHHHHHHhhcc-cccccChhh-hhhhcchhHHHHHHHHHHHHHHHHHh
Q 018910 270 AVFWSSLAR----VTSSWVISPILGALVSFLVYKCIRRVCAFT-LWTCTNNAR-CLASNMALPWLVKFLKFICLCLWFLK 343 (349)
Q Consensus 270 ~V~w~~l~~----Iv~sWilTPpia~iis~ll~~ll~~i~~~~-i~~~~~~~~-~a~~~~~~P~~~~~~~~~~~~~~~~k 343 (349)
.-+|+...+ .+..+.+.|..++.+-+++..-.+.+.|.. -+++++..+ -.+ .+.|+..+-....+.+++..+
T Consensus 148 ~~~~~~~~el~~L~~~f~~lppl~af~lYFc~wHS~rh~~~~~~~l~~~~~~~~~~~--~a~~~~~~a~~~~~~l~~~~~ 225 (259)
T PF15461_consen 148 RRRWRLAAELALLLALFALLPPLVAFALYFCLWHSLRHILRIIRFLDGQSSRRRFLR--SAAPLTLAAILGLAGLYFLLP 225 (259)
T ss_pred hhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 445664444 355668889999888888888887763322 122222222 333 678886655444555555544
No 23
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=23.72 E-value=9.8e+02 Score=26.14 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.4
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHH
Q 018910 281 SSWVISPILGALVSFLVYKCIRRV 304 (349)
Q Consensus 281 ~sWilTPpia~iis~ll~~ll~~i 304 (349)
+.|++...++.+++++++.++|+.
T Consensus 601 ~~~~~~~~~g~~v~a~~~~~~k~~ 624 (631)
T PRK09765 601 IGWFGAALVGAAISTAILLIWRRH 624 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcch
Confidence 469999999999999998888765
No 24
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=22.91 E-value=3.4e+02 Score=28.30 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 018910 141 KTKLLSHATLLFGFYMAWNIGANDVANAMGTSVGSG---ALTLRQAVLTAAVLEFSGALLMGTHVTSTM 206 (349)
Q Consensus 141 ~~~~f~~l~iisA~~~AFs~GANDvaNa~G~iVgsg---~l~~~~alllaai~i~lGall~G~rVi~Tv 206 (349)
.|++.+.+..+..+.+..+.-+.|.++..|...+-. ..++.+..++.++...+=....|.|..|.+
T Consensus 84 r~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~~~r~~E~~ 152 (416)
T COG1914 84 RERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLKGYRLLERV 152 (416)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 466778888889999999999999999999998754 335566555555544433333345555543
No 25
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=21.49 E-value=9.5e+02 Score=25.13 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHHHH--HHHHHhhhhHhHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceec
Q 018910 146 SHATLLFGFY--MAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVT 213 (349)
Q Consensus 146 ~~l~iisA~~--~AFs~GANDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TvG~~I~~l 213 (349)
|++..+.+++ ..|..|.---+|++.-.+....-.|.|...+.-.....=..++|-|.+-.+.+.+++.
T Consensus 129 k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~ 198 (425)
T TIGR00835 129 RWLAVLFAVFLIASFGIGNMVQANAIASALSNAFNVPKLVTGIVLTVLTALIIFGGLKRIAKISSVVVPF 198 (425)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 3444443333 2334453344466655554211234554333222222223566877777777766654
No 26
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=21.10 E-value=5.5e+02 Score=25.10 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=15.2
Q ss_pred HHHHHhhCCccchhhHhhhHHHHHHH
Q 018910 238 LQVASYYGWPVSTTHCIVGSMVGFGL 263 (349)
Q Consensus 238 vliaT~lGiPVSTThaiVGsIiGvGl 263 (349)
+.+...+|+++++--+..|+ .|+++
T Consensus 83 ~~~l~~lGi~~~~l~a~~G~-~glai 107 (286)
T PRK10334 83 IAALGRVGVQTASVIAVLGA-AGLAV 107 (286)
T ss_pred HHHHHHcCCcHHHHHHHHHH-HHHHH
Confidence 44556789998776664443 44443
No 27
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=20.87 E-value=3.2e+02 Score=23.14 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhCCccchhhHhhhHHHH
Q 018910 228 LSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVG 260 (349)
Q Consensus 228 ~aAllaAai~vliaT~lGiPVSTThaiVGsIiG 260 (349)
+|+.++- ...-...++|+|.|.+-. +|+.+|
T Consensus 54 mCg~la~-~~~~~l~~~g~~~~~a~~-~g~~IG 84 (107)
T TIGR01594 54 MCAAIAL-VAASALDFLGLPTSLSPF-LGGMIG 84 (107)
T ss_pred HHHHHHH-HHHHHHHHcCCcHHHHHH-Hhhhee
Confidence 5666653 334566789999887764 444444
No 28
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.07 E-value=2.3e+02 Score=22.19 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHH
Q 018910 111 STASAISICIALAALTLPFFMKSLGQGLDIKTKLLSH 147 (349)
Q Consensus 111 ~~~~~i~~~l~~lv~~~~~~~~~~~~~~~~~~~~f~~ 147 (349)
++++++|+++||.+... ++-+.+..+|+-.++.+|.
T Consensus 4 ilali~G~~~Gff~ar~-~~~k~l~~NPpine~mir~ 39 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARK-YMEKQLKENPPINEKMIRA 39 (64)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 45566667777655322 4445454677656666654
Done!