Query 018910
Match_columns 349
No_of_seqs 229 out of 1567
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:57:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p58_D Envelope protein M; fla 7.4 2.6E+02 0.009 21.3 2.6 18 97-114 27-44 (75)
2 2lx0_A Membrane fusion protein 6.9 3.5E+02 0.012 17.2 2.5 17 328-344 12-28 (32)
3 3iyz_A Aquaporin-4; water tran 6.8 1.5E+03 0.051 21.6 10.4 20 283-302 250-269 (340)
4 4f4l_A ION transport protein; 5.6 1.3E+02 0.0045 23.9 0.0 14 62-75 95-108 (112)
5 3s90_C Talin-1, metavinculin; 5.4 3.6E+02 0.012 18.3 2.1 17 158-174 19-35 (40)
6 3j27_B Matrix protein, small e 5.3 3.7E+02 0.013 20.4 2.5 18 97-114 27-44 (75)
7 4hkr_A Calcium release-activat 4.9 1.1E+03 0.037 21.4 5.6 61 276-339 109-169 (214)
8 3kp9_A Vkorc1/thioredoxin doma 4.3 7.2E+02 0.025 23.0 4.2 12 243-254 67-78 (291)
9 2vv5_A MSCS, small-conductance 4.1 1.9E+03 0.064 19.6 9.1 25 238-263 83-107 (286)
10 4djk_A Probable glutamate/gamm 4.1 1.7E+03 0.059 20.7 7.0 35 189-224 302-342 (511)
No 1
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=7.40 E-value=2.6e+02 Score=21.27 Aligned_cols=18 Identities=0% Similarity=-0.158 Sum_probs=12.7
Q ss_pred CchhhhHHHHhcChhHHH
Q 018910 97 DDLPGMAQAFHISSSTAS 114 (349)
Q Consensus 97 ~~l~ki~~~~~~Sp~~~~ 114 (349)
+-+.|++.+..-.|.-++
T Consensus 27 ~~l~kvE~WilrNp~~al 44 (75)
T 1p58_D 27 KHAQRIETWILRHPGFTI 44 (75)
T ss_pred HHHHHHHHHHHHChHHHH
Confidence 456778888777776653
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=6.91 E-value=3.5e+02 Score=17.17 Aligned_cols=17 Identities=41% Similarity=1.069 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 018910 328 LVKFLKFICLCLWFLKY 344 (349)
Q Consensus 328 ~~~~~~~~~~~~~~~k~ 344 (349)
+++++-|..--||+.||
T Consensus 12 lvalltflafgfwlfky 28 (32)
T 2lx0_A 12 LVALLTFLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566667888887
No 3
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=6.79 E-value=1.5e+03 Score=21.59 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=16.7
Q ss_pred hhhchhHHHHHHHHHHHHHH
Q 018910 283 WVISPILGALVSFLVYKCIR 302 (349)
Q Consensus 283 WilTPpia~iis~ll~~ll~ 302 (349)
.++.|+++++++.++|..+.
T Consensus 250 ywvgPiiGailaallY~~l~ 269 (340)
T 3iyz_A 250 YWVGPIIGAVLAGALYEYVF 269 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 34899999999999998763
No 4
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=5.58 E-value=1.3e+02 Score=23.87 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred hhhhhhccCccccc
Q 018910 62 SSFAEAEGEGEEEQ 75 (349)
Q Consensus 62 ~~~~~~~~~~~~~~ 75 (349)
.+|.+.+.||++++
T Consensus 95 ~~f~~~~~~~~~~~ 108 (112)
T 4f4l_A 95 DAMAITKEQEEEAK 108 (112)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 46776665554443
No 5
>3s90_C Talin-1, metavinculin; four-helix bundle, cell adhesion, focal adhesion; 1.97A {Mus musculus}
Probab=5.40 E-value=3.6e+02 Score=18.29 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=12.4
Q ss_pred HHHhhhhHhHHHHHHHh
Q 018910 158 WNIGANDVANAMGTSVG 174 (349)
Q Consensus 158 Fs~GANDvaNa~G~iVg 174 (349)
|...++|++|+.+-+|.
T Consensus 19 Fv~~AkeVa~~Ta~Lv~ 35 (40)
T 3s90_C 19 FVQSAKEVANSTANLVK 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 45678899888776653
No 6
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=5.31 E-value=3.7e+02 Score=20.38 Aligned_cols=18 Identities=0% Similarity=-0.158 Sum_probs=12.7
Q ss_pred CchhhhHHHHhcChhHHH
Q 018910 97 DDLPGMAQAFHISSSTAS 114 (349)
Q Consensus 97 ~~l~ki~~~~~~Sp~~~~ 114 (349)
+-+.|++.+..-.|.-++
T Consensus 27 ~~l~rvE~WilrNp~~al 44 (75)
T 3j27_B 27 KHAQRIETWILRHPGFTI 44 (75)
T ss_dssp HHHHHHHHHHHHCCTHHH
T ss_pred HHHHHHHHHHHHChHHHH
Confidence 456778888777776653
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=4.87 E-value=1.1e+03 Score=21.36 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=34.4
Q ss_pred HhHhhhhhhhchhHHHHHHHHHHHHHHHHhhcccccccChhhhhhhcchhHHHHHHHHHHHHHH
Q 018910 276 LARVTSSWVISPILGALVSFLVYKCIRRVCAFTLWTCTNNARCLASNMALPWLVKFLKFICLCL 339 (349)
Q Consensus 276 l~~Iv~sWilTPpia~iis~ll~~ll~~i~~~~i~~~~~~~~~a~~~~~~P~~~~~~~~~~~~~ 339 (349)
=..|=.+|..+-.+|..+=.+-..++-++ ++-............ ..+|..+.|+.|.|-|.
T Consensus 109 ~~yIE~AW~fST~lGi~LFL~evall~WV-KF~~~~~~aa~~~t~--vliPv~i~F~~Fa~hFY 169 (214)
T 4hkr_A 109 HWYIETAWAFSTLLGLILFLLEIAILCWV-KFYDLSRRAAWSATV--VLIPVMIIFMAFAIHFY 169 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTCHHHHHHHHH--HTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhheE-EeecCCcHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 35688899987655544422222223332 112333333344444 56899999999988764
No 8
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=4.28 E-value=7.2e+02 Score=22.99 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=6.6
Q ss_pred hhCCccchhhHh
Q 018910 243 YYGWPVSTTHCI 254 (349)
Q Consensus 243 ~lGiPVSTThai 254 (349)
.+|+|.|.-..+
T Consensus 67 ~fGiP~~~~G~~ 78 (291)
T 3kp9_A 67 FLGIPTAAVGLL 78 (291)
T ss_dssp ETTEEHHHHHHH
T ss_pred hcCCcHHHHHHH
Confidence 456666655444
No 9
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=4.15 E-value=1.9e+03 Score=19.60 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=14.0
Q ss_pred HHHHHhhCCccchhhHhhhHHHHHHH
Q 018910 238 LQVASYYGWPVSTTHCIVGSMVGFGL 263 (349)
Q Consensus 238 vliaT~lGiPVSTThaiVGsIiGvGl 263 (349)
+.+...+|+++++--+. .+++|+++
T Consensus 83 ~~~l~~~gi~~~~l~a~-~g~~g~ai 107 (286)
T 2vv5_A 83 IAALGRVGVQTASVIAV-LGAAGLVV 107 (286)
T ss_dssp HHHHHTTTCCSTTHHHH-HHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHH-HHHHHHHH
Confidence 34456789987654443 33445444
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=4.14 E-value=1.7e+03 Score=20.67 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhHHHHHHhhcC------ceeccccCCchhHHH
Q 018910 189 VLEFSGALLMGTHVTSTMQKG------ILVTSVFQGKDTLLF 224 (349)
Q Consensus 189 i~i~lGall~G~rVi~TvG~~------I~~l~~~~g~p~~~~ 224 (349)
+....+.+....|+...++++ ..+.++ ++.|.+..
T Consensus 302 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~~-~~~P~~ai 342 (511)
T 4djk_A 302 LAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK-NGVPVTLV 342 (511)
T ss_dssp HHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCCS-SSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCcccHHHHhcCC-CCCcHHHH
Confidence 333445566678888887643 345555 45677654
Done!