Query 018910
Match_columns 349
No_of_seqs 229 out of 1567
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 07:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018910.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018910hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkma1 a.4.5.33 (A:1-75) Tran 7.6 74 0.0054 21.6 1.5 29 238-266 24-52 (75)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.0 4.5E+02 0.033 18.6 6.6 56 280-343 37-102 (107)
3 d2outa1 a.140.3.2 (A:94-131) U 6.0 63 0.0046 19.7 0.3 13 61-73 25-37 (38)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 5.8 4.5E+02 0.033 18.3 6.6 21 323-343 76-96 (100)
5 d2vv5a3 f.34.1.1 (A:27-112) Me 5.7 4.1E+02 0.03 17.7 7.4 27 236-263 55-81 (86)
6 d2nysa1 b.136.1.2 (A:3-119) Un 5.7 56 0.0041 25.2 -0.2 21 50-70 89-109 (117)
7 d2axth1 f.23.33.1 (H:2-65) Pho 5.3 1.2E+02 0.0091 20.8 1.5 28 274-301 15-42 (64)
8 d2r6gf2 f.58.1.1 (F:261-504) M 4.1 3.8E+02 0.028 21.1 4.2 29 273-301 18-46 (244)
9 d1rh5b_ f.23.28.1 (B:) Preprot 2.9 6.9E+02 0.05 16.3 4.1 33 271-303 18-50 (56)
10 d1ppjd2 f.23.11.1 (D:196-241) 2.8 3.6E+02 0.026 17.0 2.1 16 331-346 16-31 (46)
No 1
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.59 E-value=74 Score=21.62 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=25.8
Q ss_pred HHHHHhhCCccchhhHhhhHHHHHHHhhC
Q 018910 238 LQVASYYGWPVSTTHCIVGSMVGFGLVYG 266 (349)
Q Consensus 238 vliaT~lGiPVSTThaiVGsIiGvGla~~ 266 (349)
-.++..+|+|-||+|=++..+.-.|+..+
T Consensus 24 ~eia~~~~~~~st~~rll~tL~~~g~l~~ 52 (75)
T d1mkma1 24 SEIAEKFNMSVSNAYKYMVVLEEKGFVLR 52 (75)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 44688999999999999999999999864
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.04 E-value=4.5e+02 Score=18.61 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=31.9
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHhhcccccccC----------hhhhhhhcchhHHHHHHHHHHHHHHHHHh
Q 018910 280 TSSWVISPILGALVSFLVYKCIRRVCAFTLWTCTN----------NARCLASNMALPWLVKFLKFICLCLWFLK 343 (349)
Q Consensus 280 v~sWilTPpia~iis~ll~~ll~~i~~~~i~~~~~----------~~~~a~~~~~~P~~~~~~~~~~~~~~~~k 343 (349)
...|+.+.+...+.+..+|...+.- ++++ +.+..- ..+|.++.+.+++-++-.+|+
T Consensus 37 ~v~~i~~~I~~~V~~~~~~~~~~~r------~~~~~~~~~~~~n~~lEi~W--TviP~lIL~~laipSl~~Ly~ 102 (107)
T d3ehbb2 37 FVLYIITAVTIFVCLLLLICIVRFN------RRANPVPARFTHNTPIEVIW--TLVPVLILVAIGAFSLPILFR 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSB------TTTSSSCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh------ccCCccccccccchHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555421 1222 123334 678988888777777777765
No 3
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=5.99 E-value=63 Score=19.73 Aligned_cols=13 Identities=54% Similarity=0.767 Sum_probs=9.8
Q ss_pred chhhhhhccCccc
Q 018910 61 ISSFAEAEGEGEE 73 (349)
Q Consensus 61 ~~~~~~~~~~~~~ 73 (349)
+.-||.+|||+.+
T Consensus 25 ialfapadgekse 37 (38)
T d2outa1 25 IALFAPADGEKSE 37 (38)
T ss_dssp HHHCCSCCSSCCC
T ss_pred HHhccccCccccc
Confidence 4568899998754
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.77 E-value=4.5e+02 Score=18.27 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHHHHHHHh
Q 018910 323 MALPWLVKFLKFICLCLWFLK 343 (349)
Q Consensus 323 ~~~P~~~~~~~~~~~~~~~~k 343 (349)
..+|.++.+.+++-++-.+|.
T Consensus 76 TviP~lILi~l~~pS~~~ly~ 96 (100)
T d3dtub2 76 TIVPIVILVAIGAFSLPVLFN 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888877777777766664
No 5
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=5.74 E-value=4.1e+02 Score=17.69 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=17.6
Q ss_pred HHHHHHHhhCCccchhhHhhhHHHHHHH
Q 018910 236 TWLQVASYYGWPVSTTHCIVGSMVGFGL 263 (349)
Q Consensus 236 i~vliaT~lGiPVSTThaiVGsIiGvGl 263 (349)
..+...+.+|+|++.=-+ ..++.|++.
T Consensus 55 ~~~~~L~~~Gi~~t~l~a-~~G~~gvai 81 (86)
T d2vv5a3 55 TLIAALGRVGVQTASVIA-VLGAAGLVV 81 (86)
T ss_dssp HHHHHHHTTTCCSTTHHH-HHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHH-HHHHHHHHH
Confidence 334556789999886444 555567665
No 6
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.69 E-value=56 Score=25.24 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=16.6
Q ss_pred cccccccccccchhhhhhccC
Q 018910 50 KNSRLTHSFASISSFAEAEGE 70 (349)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~ 70 (349)
+..+|+-||+|+.+|+|..-+
T Consensus 89 ~~e~L~IPf~aI~~F~DPsv~ 109 (117)
T d2nysa1 89 TPEKLVIPYNAIRGFYDPSVN 109 (117)
T ss_dssp EEEEEEEEGGGEEEEEEGGGT
T ss_pred eeEEEEeehHHhheecCCCCC
Confidence 345699999999999987543
No 7
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.26 E-value=1.2e+02 Score=20.79 Aligned_cols=28 Identities=14% Similarity=0.509 Sum_probs=21.7
Q ss_pred HhHhHhhhhhhhchhHHHHHHHHHHHHH
Q 018910 274 SSLARVTSSWVISPILGALVSFLVYKCI 301 (349)
Q Consensus 274 ~~l~~Iv~sWilTPpia~iis~ll~~ll 301 (349)
+..+|++-.|--||+++...+....+++
T Consensus 15 SeyGKVaPGWGTTplMgv~m~Lf~vfl~ 42 (64)
T d2axth1 15 SEYGKVAPGWGTTPLMAVFMGLFLVFLL 42 (64)
T ss_dssp TCSSCCCSTTTTHHHHHHHHHHHHHHHH
T ss_pred cccCcccCCcCccHHHHHHHHHHHHHHH
Confidence 4667899999999999988875554443
No 8
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.14 E-value=3.8e+02 Score=21.08 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=13.4
Q ss_pred HHhHhHhhhhhhhchhHHHHHHHHHHHHH
Q 018910 273 WSSLARVTSSWVISPILGALVSFLVYKCI 301 (349)
Q Consensus 273 w~~l~~Iv~sWilTPpia~iis~ll~~ll 301 (349)
|+.+..-+..-+++.+++..+|+.+-+.+
T Consensus 18 ~~~l~~t~~~~~~~~~~~~~~~~~lA~~l 46 (244)
T d2r6gf2 18 LAIFVWTVVFSLITVFLTVAVGMVLACLV 46 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444434444445555555555444433
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.93 E-value=6.9e+02 Score=16.25 Aligned_cols=33 Identities=6% Similarity=-0.023 Sum_probs=23.6
Q ss_pred ccHHhHhHhhhhhhhchhHHHHHHHHHHHHHHH
Q 018910 271 VFWSSLARVTSSWVISPILGALVSFLVYKCIRR 303 (349)
Q Consensus 271 V~w~~l~~Iv~sWilTPpia~iis~ll~~ll~~ 303 (349)
=+|+...++...=-+-..+=+.++++++.+...
T Consensus 18 P~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~~~ 50 (56)
T d1rh5b_ 18 PTKDEYLAVAKVTALGISLLGIIGYIIHVPATY 50 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888777776777777777777765543
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.83 E-value=3.6e+02 Score=16.97 Aligned_cols=16 Identities=13% Similarity=0.303 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhcce
Q 018910 331 FLKFICLCLWFLKYHI 346 (349)
Q Consensus 331 ~~~~~~~~~~~~k~~~ 346 (349)
++.+...+++.+|.|+
T Consensus 16 ~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 16 MMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4445566677777764
Done!