BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018911
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%)
Query: 96 FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
+ +TG LRP YP+ VP+YI+ PD+A E L+ +IK + + IE MR
Sbjct: 2 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 61
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
CR+AREVLD AA MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEV
Sbjct: 62 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 121
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
ICHGIPD R L++GDIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI
Sbjct: 122 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 181
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVV 300
VKPGVR+RE+G +I +HA +GFSVV
Sbjct: 182 DAVKPGVRYRELGNIIQKHAQANGFSVV 209
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%)
Query: 96 FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
+ +TG LRP YP+ VP+YI+ PD+A E L+ +IK + + IE MR
Sbjct: 1 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 60
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
CR+AREVLD AA MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEV
Sbjct: 61 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 120
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
ICHGIPD R L++GDIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI
Sbjct: 121 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 180
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVV 300
VKPGVR+RE+G +I +HA +GFSVV
Sbjct: 181 DAVKPGVRYRELGNIIQKHAQANGFSVV 208
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/208 (58%), Positives = 151/208 (72%), Gaps = 3/208 (1%)
Query: 96 FDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMR 152
+ +TG LRP YP+ VP+YI+ PD+A E L+ +IK + + IE MR
Sbjct: 26 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR 85
Query: 153 ETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212
CR+AREVLD AA MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEV
Sbjct: 86 LVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEV 145
Query: 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272
ICHGIPD R L++GDIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI
Sbjct: 146 ICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAI 205
Query: 273 SIVKPGVRFREIGEVINRHATMSGFSVV 300
VKPGVR+RE+G +I +HA +GFSVV
Sbjct: 206 DAVKPGVRYRELGNIIQKHAQANGFSVV 233
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 144/209 (68%), Gaps = 3/209 (1%)
Query: 95 HFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRET 154
+F +TG +RP+P+S VP++IE PD+A+ P+ E + + + ++I+R+RE
Sbjct: 56 NFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREA 115
Query: 155 CRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214
C + R+ LD A ++ PGVTTDEIDR VHE I YPS LNY+ FPKSCCTSVNE++C
Sbjct: 116 CILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVC 175
Query: 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA---SRQLVQCTYECLEKA 271
HGIPD R L+ GDI+NID++V+YKGVH DLNETYFVG+ ++ ++LV+ Y L +A
Sbjct: 176 HGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEA 235
Query: 272 ISIVKPGVRFREIGEVINRHATMSGFSVV 300
I KPG+ ++ IG +I+ + + FSVV
Sbjct: 236 IKKCKPGMFYKNIGTLIDAYVSKKNFSVV 264
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 140/216 (64%), Gaps = 11/216 (5%)
Query: 96 FDWTGTLRPYPISSKLTVPAYIELPDWA-LDGTPKVEPNSDLQHVVEI----------KT 144
FD+TG LRP I+ + VP++I PD+A G D V++ K
Sbjct: 6 FDFTGPLRPGKITPRRAVPSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKK 65
Query: 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS 204
+I+R++ C+++REVLD A +PG+TTDE+DR+VHEAT+ YPSPLNY+ FPKS
Sbjct: 66 TAEIQRIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKS 125
Query: 205 CCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
CTSVNEVICHGIPDSR+LE+GDI+NIDV+ Y G HGDLNET F+G D+ S +LV
Sbjct: 126 VCTSVNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAA 185
Query: 265 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
YECL I +VKP ++++G+ I A+ SVV
Sbjct: 186 YECLCAGIGVVKPEALYKQVGDAIEACASQYQCSVV 221
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 120/199 (60%), Gaps = 6/199 (3%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 10 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 63
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIPDS
Sbjct: 64 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDST 123
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 124 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 183
Query: 282 REIGEVINRHATMSGFSVV 300
IG VI +A G++VV
Sbjct: 184 SVIGRVIESYANRFGYNVV 202
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 120/199 (60%), Gaps = 6/199 (3%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 13 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 66
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIPDS
Sbjct: 67 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDST 126
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 127 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 186
Query: 282 REIGEVINRHATMSGFSVV 300
IG VI +A G++VV
Sbjct: 187 SVIGRVIESYANRFGYNVV 205
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 120/199 (60%), Gaps = 6/199 (3%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 7 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 60
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIPDS
Sbjct: 61 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDST 120
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 121 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 180
Query: 282 REIGEVINRHATMSGFSVV 300
IG VI +A G++VV
Sbjct: 181 SVIGRVIESYANRFGYNVV 199
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 119/199 (59%), Gaps = 6/199 (3%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREV 161
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 13 LSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSEPW----VQTPEVIEKMRVAGRIAAGA 66
Query: 162 LDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSR 221
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSC TS+NEVICHGIPDS
Sbjct: 67 LAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDST 126
Query: 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRF 281
+ DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 127 VITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRAL 186
Query: 282 REIGEVINRHATMSGFSVV 300
IG VI +A G++VV
Sbjct: 187 SVIGRVIESYANRFGYNVV 205
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 165
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 165
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 165
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 165
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 3 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 62
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 63 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 122
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 165
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 164
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 164
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 164
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 164
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHF 200
IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L YH
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 201 FPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
+PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG +
Sbjct: 64 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 123
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 124 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 164
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHF 200
IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + S L YH
Sbjct: 2 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 61
Query: 201 FPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
+PKS C S+NEV+CHGIPD KL +DGDIVNIDVTV G HGD ++ + VG +
Sbjct: 62 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 121
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 122 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 162
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
+++I T +MR ++A E LD ++P VTT+ ++ + H + P+PLNY
Sbjct: 5 MIKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNY 64
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
FPKS CTS+N V+CHGIP+ + L++GDIVNIDVTV G +GD + Y+VG+ +
Sbjct: 65 KGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPK 124
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L+Q TY+ + K I +V+PG + +IG I +A +SVV
Sbjct: 125 RLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVV 166
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
+++I T +MR ++A E LD ++P VTT+ ++ + H + P+PLNY
Sbjct: 5 MIKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNY 64
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
FPKS CTS+N V+CHGIP+ + L++GDIVNIDVTV G +GD + Y+VG+ +
Sbjct: 65 KGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPK 124
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L+Q TY+ + K I +V+PG + +IG I +A +SVV
Sbjct: 125 RLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVV 166
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 1/171 (0%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ IKTP +IE+M++ + L ++I PG T +++ +V E P+ Y
Sbjct: 13 MIRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGY 72
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKL-EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
+ + C SVNE + HG+P K+ ++GDIV++DV Y+G++GD TY VG DE
Sbjct: 73 GGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERG 132
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAI 308
++LV+ T E LEKAI ++KPG+R ++ I GF+V+ V +
Sbjct: 133 KELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGV 183
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
+KT ++++ ++E I +V + +PG+TT E+D + E G +P++ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
P C SVNE + HGIP R + +GD+VNIDV+ G + D ++ VG +D+ +Q V
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 262 -QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
E AI+ VKPG + IG+ ++ A + V+
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVI 162
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 1/154 (0%)
Query: 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL 196
+ VE +TP +++ M I L A + GV+T E+D+V AG PS L
Sbjct: 29 KKTVEQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFL 88
Query: 197 NYHFFPKSCCTSVNEVICHGIPDSRK-LEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE 255
YH FP S C+SVN+ + HGIP + L DGD+V+ID G HGD T+ VG
Sbjct: 89 GYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIP 148
Query: 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVIN 289
+ L + T +E I+ + PG R ++ I
Sbjct: 149 SDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIE 182
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 87/170 (51%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ +K+P +IE M E+ + +V I+PG+T+ +I+ V + + GG + + Y
Sbjct: 1 MITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGY 60
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
+ + C S+N+ ICHG P + L+DGD++ +D+ V KG D +Y VG +
Sbjct: 61 EGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEID 120
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAI 308
+L++ T + L I + G R +IG I + G+ VV V I
Sbjct: 121 RLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGI 170
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTS 208
E++ + IA++V + A ++ RPG+ E+ + + + GG P+ FP S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 209 VNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTY 265
+NE+ H P D+ L++GD + IDV V+ G D T VG ++ +L++
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAK 112
Query: 266 ECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMH 302
E L AIS+ + GV +E+G+ I GF +++
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVN 149
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTS 208
E++ + IA++V + A ++ RPG+ E+ + + + GG P+ FP S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 209 VNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTY 265
+NE+ H P D+ L++GD + IDV V+ G D T VG ++ +L++
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAK 112
Query: 266 ECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMH 302
E L AIS+ + GV +E+G+ I GF +++
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVN 149
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
IKT ++IE + + C IA + + AA I G E+ V E + G P F
Sbjct: 124 IKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKV-EYLMKMNGAEKPA----F 178
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
+ + HG+ +++E GD+V ID+ Y + D+ T VG+ +E R++
Sbjct: 179 DTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIY 238
Query: 262 QCTYECLEKAISIVKPGVRFREI 284
+ E ++A+ KPG+ +E+
Sbjct: 239 EIVLEAQKRAVEAAKPGMTAKEL 261
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
NSD+ + + +P+ E+ RE I E A +PG+T E+D + E I GY
Sbjct: 218 NSDITRTIVVGSPN--EKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIARE-IIKEYGY 274
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
IKT +I+ ++E +IA + IRPGV+ E+ + G S F
Sbjct: 130 IKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----F 184
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
+ + + HG+ + +E GD V +D YYKG D+ T VG + +++
Sbjct: 185 DIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIY 244
Query: 262 QCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297
E + ++ +K G+ RE + + T G+
Sbjct: 245 NIVLEAQLRGVNGIKAGLTGREADALTRDYITEKGY 280
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
IK+ +I+ + + C IA + + AA I G E+ V E + G P F
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKV-EYLMKMNGAEKPA----F 181
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLV 261
+ + HG+ +++E GD+V ID+ Y+ + D+ T VG+ +E +++
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 262 QCTYECLEKAISIVKPGVRFREIGEV 287
+ E +KA+ KPG+ +E+ +
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSI 267
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I + ++ DGD+V ID YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 10/151 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDS-RKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASR 258
+ + N I H + ++ DGD+V ID YKG GD+ T+ V G +A R
Sbjct: 229 YNTIVGSGENGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 288
Query: 259 QLVQCTYECLEKAISIVKPGVRFREI-GEVI 288
++ E LE ++ + +PG E+ GEV+
Sbjct: 289 EIYDIVLESLETSLRLYRPGTSILEVTGEVV 319
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V I YKG GD+ T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I A RPG+ ++ + HE YPS
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------ 228
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
+ + N I H + ++ DGD+V ID YKG G + T+ V G +A R+
Sbjct: 229 YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQRE 288
Query: 260 LVQCTYECLEKAISIVKPGVRFREI-GEVI 288
+ E LE ++ + +PG E+ GEV+
Sbjct: 289 IYDIVLESLETSLRLYRPGTSILEVTGEVV 318
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Query: 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
+ +++ + +K +IE++++ I+ + IR G+T EI ++ E T+ G
Sbjct: 124 DDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALL-EYTMRKEG- 181
Query: 193 PSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN 252
+ + S C S + HG + +E GD++ ID Y+ D+ +G
Sbjct: 182 AEGVAFDTIVASGCRSA---LPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGE 238
Query: 253 ADEASRQLVQCTYECLEKAISIVKPGV 279
+ +++ E E+A+ I K GV
Sbjct: 239 PSDEVKEVHSIVLEAQERALKIAKAGV 265
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S SVN +CH P L++GD+V ID+ V+ G ++ T+ +G A
Sbjct: 69 FPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGT 126
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
+++ + C E A+ +VKPG + ++ E N+ A
Sbjct: 127 QVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 167
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S SVN +CH P L++GD+V ID+ V+ G ++ T+ V A
Sbjct: 76 FPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGT 133
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
+++ + C E A+ +VKPG + ++ E N+ A
Sbjct: 134 QVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 174
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S SVN +CH P L++GD+V ID+ V+ G ++ T+ V A
Sbjct: 83 FPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGT 140
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
+++ + C E A+ +VKPG + ++ E N+ A
Sbjct: 141 QVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 181
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ +N H +RK+ GDI++++ G + L T F+ + + +L Q E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 267 CLEKAISIVKPGVR----FREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTE 316
E + ++KPG R RE+ E+ +H + + + F + H Y E
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQ-YRTFGYGHSFGTLSHYYGRE 335
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ +N H +RK+ GDI++++ G + L T F+ + + +L Q E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 267 CLEKAISIVKPGVR----FREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTE 316
E + ++KPG R RE+ E+ +H + + + F + H Y E
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQ-YRTFGYGHSFGTLSHYYGRE 335
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 25/201 (12%)
Query: 121 DWALD----GTPKVEPNSDL-QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTT 175
DW + G +P S L + + IK ++++ M RIA +V + +T
Sbjct: 105 DWLIGIMKLGKFTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEI-------LTW 157
Query: 176 DEIDRVVHEATITAGGYPSPLNYHF-FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVT 234
D I E + L+ F + N H P RK+ GDI+ +D
Sbjct: 158 DLIGMKERELALKIELLIRELSDGIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYG 217
Query: 235 VYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIG----EVINR 290
+KG D+ T +G DE ++ + + E A V+ G++ +++ EVI++
Sbjct: 218 ARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISK 277
Query: 291 --------HATMSGFSVVMHN 303
H T G + +H
Sbjct: 278 AGYGEYFIHRTGHGLGLDVHE 298
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 194 SPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNA 253
S + +H F + N + H + ++++GD+V +D+ + D++ T F N
Sbjct: 218 SGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYT-FPANG 276
Query: 254 DEASR--QLVQCTYECLEKAISIVKPGVRFREIGE 286
+SR Q+ L++ I+KPG++F + E
Sbjct: 277 TFSSRQKQIYNIVLNALKETTEIIKPGLKFAALNE 311
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 215 HGIPDSRKLEDGDIVNIDVT-VYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAIS 273
HG D RKL+ GDIV +D+ Y G + D TY +G+ Q A+
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 274 IVKPGVRFREI 284
V+PGV ++
Sbjct: 277 AVRPGVTAAQV 287
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%)
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQL 260
F + N H P RK+ GD+V D Y G D+ T VG E +++
Sbjct: 205 FEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKV 264
Query: 261 VQCTYECLEKAISIVKPGV 279
+ E E A+ V G+
Sbjct: 265 YEIVKEAQETAVQKVAEGI 283
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ +N H R + GDI++++ G + L T F+ +AS +
Sbjct: 223 SGINTDGAHNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVXDASLXIWXKNTA 282
Query: 267 CLEKAISIVKPGVRFREIGEVIN---RHATMSGFSVVMHNVWFAIVIHCYSTE 316
+ + ++KPG R ++I +N R + + + F ++ H Y E
Sbjct: 283 VHRRGLXLIKPGARCKDIASELNXMYRXWDLLRYRTFGYGHSFGVLXHYYGRE 335
>pdb|3ES5|A Chain A, Crystal Structure Of Partitivirus (Psv-F)
pdb|3ES5|B Chain B, Crystal Structure Of Partitivirus (Psv-F)
Length = 420
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 45 DCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP 104
DC K W H S+ + +L++ S LV + +R +G + +P
Sbjct: 202 DCSKLVWADHSSLSMIKRLASEKI---SQLVKQRYRVTDAQGHVYSVSMP---------- 248
Query: 105 YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVV 140
+LT A LPD+ D P V PNSD V+
Sbjct: 249 -----QLTDQA---LPDY-YDSIPDVAPNSDQLRVL 275
>pdb|1IBV|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBV|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBV|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At-170 C
pdb|1IBW|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
pdb|1IBW|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
pdb|1IBW|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
Bound With Histidine Methyl Ester At 25 C
Length = 228
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM 151
+ P I + +TV Y+ LP ++ G + P+ D++ + + P+ +E+M
Sbjct: 166 MEPGQIGNAITVAPYVSLPIDSIPGGSILTPDKDMEIMENLTMPEWLEKM 215
>pdb|1HQ6|B Chain B, Structure Of Pyruvoyl-dependent Histidine Decarboxylase At
Ph 8
pdb|1HQ6|D Chain D, Structure Of Pyruvoyl-dependent Histidine Decarboxylase At
Ph 8
pdb|1IBT|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBT|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBT|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At-170 C
pdb|1IBU|B Chain B, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1IBU|D Chain D, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1IBU|F Chain F, Structure Of The D53,54n Mutant Of Histidine Decarboxylase
At 25 C
pdb|1PYA|B Chain B, Refined Structure Of The Pyruvoyl-Dependent Histidine
Decarboxylase From Lactobacillus 30a
pdb|1PYA|D Chain D, Refined Structure Of The Pyruvoyl-Dependent Histidine
Decarboxylase From Lactobacillus 30a
pdb|1PYA|F Chain F, Refined Structure Of The Pyruvoyl-Dependent Histidine
Decarboxylase From Lactobacillus 30a
Length = 229
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM 151
+ P I + +TV Y+ LP ++ G + P+ D++ + + P+ +E+M
Sbjct: 167 MEPGQIGNAITVAPYVSLPIDSIPGGSILTPDKDMEIMENLTMPEWLEKM 216
>pdb|2WYB|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq With A Covalently Bound Dodecanoic Acid
pdb|2WYC|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With 3-Oxo-Lauric Acid
pdb|2WYD|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With Dodecanoic Acid
pdb|2WYE|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq Is An Ntn-Hydrolase With An Unusual
Substrate-Binding Pocket
pdb|3L91|B Chain B, Structure Of Pseudomonas Aerugionsa Pvdq Bound To
Octanoate
pdb|3L94|B Chain B, Structure Of Pvdq Covalently Acylated With Myristate
pdb|3SRA|B Chain B, Structure Of Pseudomonas Aerugionsa Pvdq Covalently
Acylated With Myristic Acid From Pvdiq
pdb|3SRB|B Chain B, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Smer28
pdb|3SRC|B Chain B, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Ns2028
Length = 546
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 94 PHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKV 130
PHF W G +R Y + LT+P +++ +L G P V
Sbjct: 22 PHFPWNGAMRFYQM--HLTIPGRLDVMGASLPGLPVV 56
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 43/198 (21%)
Query: 168 MIRPGVTTDEIDRVVHEATIT--------AGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 219
++RPG+T EI R + ++T T G+P+ ++ + SC + + + G D
Sbjct: 65 IVRPGITLLEIVRSIEDSTRTLLKGERNNGIGFPAGMSMN----SC--AAHYTVNPGEQD 118
Query: 220 SRKLEDGDIVNIDVTVYYKGVHGD--LNETYFVGNADEASRQLVQCTYECLEKAISIVKP 277
ED D++ ID G H D + ++ F E L+ E E I +
Sbjct: 119 IVLKED-DVLKIDF-----GTHSDGRIMDSAFTVAFKENLEPLLVAAREGTETGIKSLGV 172
Query: 278 GVRF----REIGEVINRH--------------ATMSGFSVVMHNVWFAIVIHCYSTEDTK 319
VR R+I EVI+ + + + G S+ + I I + DT
Sbjct: 173 DVRVCDIGRDINEVISSYEVEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAVNNRDTT 232
Query: 320 QCLVVSF---SCFAKTGK 334
+ SF FA TGK
Sbjct: 233 RIKGDSFYAVETFATTGK 250
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 149 ERMRETCRIAREVLDAAARMIRPG 172
+++ E ++ RE+L++AAR+++PG
Sbjct: 359 DKINEMSQLQRELLESAARLVKPG 382
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 4 GSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
G+ AE SCV CG+ A +C C ++ +C+ C + W H+ +
Sbjct: 1 GAMDAERKEQSCVNCGREAMSECTGCHKVN-------YCSTFCQRKDWKDHQHI 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,131,130
Number of Sequences: 62578
Number of extensions: 459653
Number of successful extensions: 1307
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 77
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)