Query 018911
Match_columns 349
No_of_seqs 389 out of 1862
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:04:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2738 Putative methionine am 100.0 9.7E-94 2.1E-98 654.8 25.7 315 11-347 5-335 (369)
2 PLN03158 methionine aminopepti 100.0 3.9E-88 8.5E-93 663.5 34.0 334 6-341 3-336 (396)
3 COG0024 Map Methionine aminope 100.0 1.7E-47 3.7E-52 352.8 22.9 201 141-341 4-206 (255)
4 PRK12897 methionine aminopepti 100.0 7.7E-46 1.7E-50 345.3 23.7 204 140-343 2-205 (248)
5 PRK07281 methionine aminopepti 100.0 2.6E-45 5.6E-50 347.6 23.8 205 139-343 1-236 (286)
6 PRK12318 methionine aminopepti 100.0 1E-44 2.2E-49 344.9 24.2 204 140-344 41-246 (291)
7 TIGR00500 met_pdase_I methioni 100.0 2.2E-44 4.7E-49 334.9 24.2 203 141-343 2-204 (247)
8 PRK12896 methionine aminopepti 100.0 2.8E-43 6.1E-48 328.6 23.9 206 138-343 6-212 (255)
9 PRK05716 methionine aminopepti 100.0 6.2E-43 1.4E-47 325.7 24.0 205 139-343 2-206 (252)
10 PRK09795 aminopeptidase; Provi 100.0 1.1E-41 2.3E-46 333.6 23.1 200 136-344 121-326 (361)
11 COG0006 PepP Xaa-Pro aminopept 100.0 3.1E-41 6.7E-46 332.9 21.0 206 131-345 143-352 (384)
12 cd01086 MetAP1 Methionine Amin 100.0 6.4E-40 1.4E-44 303.0 22.8 196 148-343 1-196 (238)
13 cd01090 Creatinase Creatine am 100.0 1.5E-39 3.3E-44 299.4 22.4 197 148-344 1-200 (228)
14 PRK15173 peptidase; Provisiona 100.0 1.3E-39 2.7E-44 314.5 22.3 202 133-344 86-290 (323)
15 TIGR02993 ectoine_eutD ectoine 100.0 5.9E-40 1.3E-44 324.6 20.2 203 132-344 148-359 (391)
16 PRK10879 proline aminopeptidas 100.0 5.1E-39 1.1E-43 321.8 23.3 200 136-344 167-386 (438)
17 cd01087 Prolidase Prolidase. E 100.0 5.6E-39 1.2E-43 297.8 21.5 189 148-344 1-209 (243)
18 PRK14575 putative peptidase; P 100.0 5.7E-39 1.2E-43 318.9 22.7 203 132-344 168-373 (406)
19 PRK14576 putative endopeptidas 100.0 6.7E-39 1.5E-43 318.3 22.7 201 134-344 169-372 (405)
20 cd01092 APP-like Similar to Pr 100.0 1.1E-37 2.4E-42 281.3 22.4 187 148-343 1-188 (208)
21 PF00557 Peptidase_M24: Metall 100.0 7.4E-37 1.6E-41 276.3 18.6 186 149-343 1-189 (207)
22 PRK13607 proline dipeptidase; 100.0 1.1E-36 2.3E-41 304.9 21.4 203 136-345 155-390 (443)
23 TIGR00495 crvDNA_42K 42K curve 100.0 2E-36 4.3E-41 297.9 22.5 201 140-343 11-232 (389)
24 PTZ00053 methionine aminopepti 100.0 1.4E-35 3E-40 294.7 24.9 195 139-343 149-360 (470)
25 cd01085 APP X-Prolyl Aminopept 100.0 1.1E-35 2.4E-40 273.1 21.3 188 149-344 5-200 (224)
26 cd01066 APP_MetAP A family inc 100.0 3E-35 6.4E-40 262.9 21.3 187 148-344 1-188 (207)
27 PRK08671 methionine aminopepti 100.0 2.9E-35 6.4E-40 280.2 21.8 185 147-343 1-189 (291)
28 TIGR00501 met_pdase_II methion 100.0 4.8E-35 1E-39 279.2 21.9 186 145-342 2-191 (295)
29 cd01088 MetAP2 Methionine Amin 100.0 1.3E-34 2.9E-39 275.7 21.3 183 148-342 1-187 (291)
30 cd01091 CDC68-like Related to 100.0 2.1E-34 4.5E-39 267.6 19.4 193 148-345 1-209 (243)
31 cd01089 PA2G4-like Related to 100.0 1.4E-33 3E-38 259.7 20.2 190 148-344 1-204 (228)
32 KOG2414 Putative Xaa-Pro amino 100.0 6E-30 1.3E-34 243.9 16.4 198 137-345 223-439 (488)
33 KOG2737 Putative metallopeptid 100.0 8.1E-29 1.7E-33 234.1 15.7 204 136-343 179-415 (492)
34 KOG1189 Global transcriptional 99.9 1.1E-21 2.3E-26 198.5 16.1 214 125-346 120-348 (960)
35 KOG2413 Xaa-Pro aminopeptidase 99.8 1E-18 2.3E-23 174.6 15.0 203 136-343 301-516 (606)
36 KOG2775 Metallopeptidase [Gene 99.7 3.7E-16 8E-21 144.6 14.8 188 143-340 80-284 (397)
37 COG5406 Nucleosome binding fac 99.7 5.6E-16 1.2E-20 154.7 14.2 212 129-346 157-389 (1001)
38 KOG2776 Metallopeptidase [Gene 99.6 7.8E-15 1.7E-19 138.9 15.4 170 141-312 14-197 (398)
39 PLN03144 Carbon catabolite rep 99.4 2E-13 4.4E-18 140.4 3.3 48 14-61 64-112 (606)
40 PF01753 zf-MYND: MYND finger; 97.9 5.9E-06 1.3E-10 54.1 1.5 36 15-57 1-36 (37)
41 cd01066 APP_MetAP A family inc 97.5 0.0016 3.6E-08 57.5 12.2 102 149-252 102-204 (207)
42 cd01092 APP-like Similar to Pr 97.2 0.0057 1.2E-07 54.7 12.0 100 149-251 103-204 (208)
43 KOG1710 MYND Zn-finger and ank 97.2 0.00014 3E-09 68.2 1.0 40 13-59 320-360 (396)
44 PLN03158 methionine aminopepti 97.1 0.0034 7.5E-08 62.5 10.3 101 239-343 126-231 (396)
45 PRK05716 methionine aminopepti 97.0 0.0074 1.6E-07 56.0 11.5 100 150-252 119-240 (252)
46 TIGR00500 met_pdase_I methioni 96.9 0.011 2.5E-07 54.7 11.8 100 150-252 117-238 (247)
47 cd01086 MetAP1 Methionine Amin 96.9 0.014 3E-07 53.6 12.0 100 150-252 109-230 (238)
48 PRK15173 peptidase; Provisiona 96.9 0.013 2.9E-07 56.8 11.9 103 149-251 202-305 (323)
49 cd01090 Creatinase Creatine am 96.8 0.02 4.4E-07 52.7 11.9 100 150-252 110-220 (228)
50 PRK09795 aminopeptidase; Provi 96.8 0.021 4.5E-07 56.1 12.6 105 144-251 235-341 (361)
51 cd01088 MetAP2 Methionine Amin 96.7 0.008 1.7E-07 57.5 9.1 82 255-343 2-84 (291)
52 PRK14575 putative peptidase; P 96.7 0.018 3.8E-07 57.7 11.9 101 150-252 286-389 (406)
53 PRK12897 methionine aminopepti 96.7 0.016 3.4E-07 53.9 10.8 100 150-252 118-239 (248)
54 cd01091 CDC68-like Related to 96.6 0.022 4.7E-07 53.1 10.8 100 149-252 119-234 (243)
55 PRK14576 putative endopeptidas 96.6 0.028 6.2E-07 56.2 12.2 100 149-251 284-387 (405)
56 TIGR02993 ectoine_eutD ectoine 96.6 0.02 4.4E-07 56.9 11.1 99 150-252 271-374 (391)
57 PRK12318 methionine aminopepti 96.5 0.032 6.9E-07 53.4 11.5 86 150-238 159-247 (291)
58 PRK12896 methionine aminopepti 96.5 0.038 8.3E-07 51.3 11.7 100 150-252 124-246 (255)
59 cd01087 Prolidase Prolidase. E 96.5 0.033 7.1E-07 51.4 11.1 102 150-252 104-235 (243)
60 PRK08671 methionine aminopepti 96.5 0.054 1.2E-06 51.8 12.8 97 150-251 102-205 (291)
61 PRK07281 methionine aminopepti 96.4 0.037 8.1E-07 52.8 11.1 99 150-251 149-270 (286)
62 PF00557 Peptidase_M24: Metall 96.1 0.033 7.1E-07 49.9 9.0 98 151-251 104-206 (207)
63 cd01089 PA2G4-like Related to 96.1 0.052 1.1E-06 49.8 10.4 99 149-252 120-220 (228)
64 COG0024 Map Methionine aminope 96.1 0.025 5.5E-07 52.9 8.1 84 255-341 12-98 (255)
65 TIGR00495 crvDNA_42K 42K curve 95.6 0.096 2.1E-06 52.2 10.6 101 150-250 139-248 (389)
66 TIGR00501 met_pdase_II methion 95.6 0.11 2.4E-06 49.7 10.4 97 151-250 106-207 (295)
67 COG0006 PepP Xaa-Pro aminopept 95.5 0.17 3.6E-06 50.1 11.7 98 150-252 263-367 (384)
68 KOG2738 Putative methionine am 95.4 0.062 1.3E-06 51.0 7.8 81 256-340 124-207 (369)
69 PRK10879 proline aminopeptidas 94.3 0.5 1.1E-05 47.8 11.8 100 151-251 284-410 (438)
70 PTZ00053 methionine aminopepti 94.1 0.43 9.3E-06 48.6 10.5 99 150-251 264-376 (470)
71 PF04438 zf-HIT: HIT zinc fing 92.8 0.056 1.2E-06 33.7 1.2 28 13-48 3-30 (30)
72 cd01085 APP X-Prolyl Aminopept 91.6 3.5 7.7E-05 37.7 12.1 96 152-251 114-215 (224)
73 PF09889 DUF2116: Uncharacteri 90.7 0.18 3.8E-06 36.6 2.0 34 25-60 5-38 (59)
74 PRK13607 proline dipeptidase; 90.6 2.7 5.8E-05 42.7 11.1 88 152-239 271-391 (443)
75 PRK00418 DNA gyrase inhibitor; 87.4 0.34 7.4E-06 35.4 1.5 28 23-50 6-36 (62)
76 KOG2857 Predicted MYND Zn-fing 87.0 2 4.3E-05 36.5 6.0 28 14-49 7-35 (157)
77 COG3024 Uncharacterized protei 85.5 0.52 1.1E-05 34.5 1.6 13 38-50 25-37 (65)
78 PRK01343 zinc-binding protein; 84.9 0.51 1.1E-05 33.8 1.4 26 24-50 10-35 (57)
79 KOG2775 Metallopeptidase [Gene 81.2 9 0.0002 36.8 8.4 82 255-341 86-172 (397)
80 PF03884 DUF329: Domain of unk 80.8 0.54 1.2E-05 33.8 0.1 26 25-50 4-32 (57)
81 KOG1189 Global transcriptional 71.7 16 0.00036 39.2 8.0 99 150-252 258-368 (960)
82 cd02249 ZZ Zinc finger, ZZ typ 71.0 1.2 2.7E-05 30.2 -0.2 37 14-58 2-41 (46)
83 COG3350 Uncharacterized conser 70.8 1.8 4E-05 30.4 0.7 10 39-48 28-37 (53)
84 cd01666 TGS_DRG_C TGS_DRG_C: 68.9 17 0.00036 27.6 5.6 52 169-231 21-73 (75)
85 PF06467 zf-FCS: MYM-type Zinc 65.9 4 8.7E-05 26.9 1.5 35 13-49 7-42 (43)
86 PF13824 zf-Mss51: Zinc-finger 64.4 7.3 0.00016 27.8 2.6 38 15-59 2-43 (55)
87 KOG3612 PHD Zn-finger protein 63.6 2.6 5.6E-05 43.3 0.3 38 15-61 530-567 (588)
88 COG4306 Uncharacterized protei 58.9 1.7 3.6E-05 36.2 -1.6 20 12-31 28-47 (160)
89 PF10571 UPF0547: Uncharacteri 55.5 6 0.00013 23.7 0.8 17 14-30 2-21 (26)
90 PRK04023 DNA polymerase II lar 54.0 7.5 0.00016 43.0 1.8 35 7-44 621-656 (1121)
91 KOG2858 Uncharacterized conser 52.8 5.8 0.00013 38.7 0.7 34 8-49 13-47 (390)
92 PF02069 Metallothio_Pro: Prok 52.8 7.4 0.00016 27.4 1.0 20 31-50 20-39 (52)
93 KOG2776 Metallopeptidase [Gene 51.9 38 0.00083 33.4 6.1 81 256-341 23-114 (398)
94 PF13248 zf-ribbon_3: zinc-rib 51.4 8.3 0.00018 22.9 1.0 17 13-29 3-22 (26)
95 cd02335 ZZ_ADA2 Zinc finger, Z 49.6 4.1 8.9E-05 28.1 -0.6 37 14-58 2-44 (49)
96 PF00254 FKBP_C: FKBP-type pep 47.2 23 0.00049 27.2 3.2 51 220-279 2-59 (94)
97 cd02345 ZZ_dah Zinc finger, ZZ 46.9 5.3 0.00011 27.6 -0.4 37 14-58 2-44 (49)
98 COG5406 Nucleosome binding fac 45.4 72 0.0016 33.9 7.2 72 159-234 308-384 (1001)
99 cd02334 ZZ_dystrophin Zinc fin 43.8 7 0.00015 27.1 -0.2 37 14-58 2-44 (49)
100 PF11023 DUF2614: Protein of u 43.7 10 0.00022 31.0 0.7 22 12-33 69-95 (114)
101 PRK00398 rpoP DNA-directed RNA 43.1 11 0.00023 25.5 0.6 21 11-31 2-29 (46)
102 COG1996 RPC10 DNA-directed RNA 42.1 9.5 0.00021 26.5 0.2 22 9-30 3-31 (49)
103 PF09297 zf-NADH-PPase: NADH p 40.9 10 0.00022 23.5 0.3 20 12-31 3-29 (32)
104 cd02341 ZZ_ZZZ3 Zinc finger, Z 40.1 11 0.00025 26.0 0.4 39 14-59 2-44 (48)
105 COG2888 Predicted Zn-ribbon RN 39.9 16 0.00034 26.5 1.1 21 14-34 29-49 (61)
106 PF12773 DZR: Double zinc ribb 39.8 19 0.00041 24.5 1.5 31 11-43 11-47 (50)
107 PF05184 SapB_1: Saposin-like 39.5 71 0.0015 20.1 4.2 34 154-187 3-36 (39)
108 PRK14890 putative Zn-ribbon RN 39.3 17 0.00036 26.3 1.2 21 14-34 27-47 (59)
109 cd02338 ZZ_PCMF_like Zinc fing 39.2 8.3 0.00018 26.6 -0.4 29 14-50 2-34 (49)
110 TIGR00115 tig trigger factor. 38.1 1.4E+02 0.003 29.7 8.0 75 173-279 120-198 (408)
111 COG4068 Uncharacterized protei 38.1 13 0.00029 26.7 0.5 23 24-48 9-31 (64)
112 PRK01490 tig trigger factor; P 37.0 1E+02 0.0023 30.9 7.0 56 173-252 132-191 (435)
113 PF09538 FYDLN_acid: Protein o 36.6 16 0.00036 29.7 0.9 22 11-32 8-35 (108)
114 cd04938 TGS_Obg-like TGS_Obg-l 35.1 69 0.0015 24.1 4.1 47 169-231 28-74 (76)
115 PF04181 RPAP2_Rtr1: Rtr1/RPAP 34.1 19 0.00041 27.3 0.8 12 39-50 59-70 (79)
116 PF12631 GTPase_Cys_C: Catalyt 33.6 1E+02 0.0022 22.8 4.8 42 253-294 10-51 (73)
117 PRK14559 putative protein seri 33.5 26 0.00056 37.5 1.9 31 12-44 15-46 (645)
118 PF13717 zinc_ribbon_4: zinc-r 32.4 20 0.00044 23.0 0.6 19 13-31 3-33 (36)
119 PF13240 zinc_ribbon_2: zinc-r 32.3 22 0.00047 20.6 0.7 8 15-22 2-9 (23)
120 smart00659 RPOLCX RNA polymera 32.3 20 0.00043 24.3 0.6 18 13-30 3-26 (44)
121 PF12855 Ecl1: Life-span regul 32.1 25 0.00055 23.7 1.1 17 36-52 20-36 (43)
122 PF09506 Salt_tol_Pase: Glucos 31.9 1.6E+02 0.0035 29.0 6.8 129 143-272 97-281 (381)
123 PRK14714 DNA polymerase II lar 31.4 22 0.00048 40.5 1.1 26 141-166 837-862 (1337)
124 PF04945 YHS: YHS domain; Int 30.9 20 0.00044 24.2 0.5 11 39-49 25-35 (47)
125 TIGR02399 salt_tol_Pase glucos 30.1 1.7E+02 0.0038 28.8 6.7 129 143-272 103-286 (389)
126 PF14446 Prok-RING_1: Prokaryo 30.0 24 0.00053 25.0 0.7 20 12-31 5-29 (54)
127 PRK00420 hypothetical protein; 29.9 19 0.00041 29.6 0.2 26 8-33 19-50 (112)
128 PRK12495 hypothetical protein; 29.8 23 0.00049 32.5 0.7 27 8-34 38-69 (226)
129 PF10122 Mu-like_Com: Mu-like 29.5 17 0.00038 25.4 -0.1 22 13-34 5-35 (51)
130 cd02340 ZZ_NBR1_like Zinc fing 28.3 21 0.00045 23.9 0.1 34 14-58 2-38 (43)
131 PRK14891 50S ribosomal protein 28.1 30 0.00064 29.0 1.1 36 12-50 4-41 (131)
132 PF03833 PolC_DP2: DNA polymer 27.8 20 0.00043 39.1 0.0 37 5-44 648-685 (900)
133 TIGR02300 FYDLN_acid conserved 27.7 29 0.00063 29.1 0.9 22 11-32 8-35 (129)
134 PF03604 DNA_RNApol_7kD: DNA d 27.5 32 0.00069 21.7 0.9 17 14-30 2-24 (32)
135 TIGR02098 MJ0042_CXXC MJ0042 f 27.2 28 0.00061 22.2 0.6 8 24-31 26-33 (38)
136 PF07754 DUF1610: Domain of un 27.1 29 0.00064 20.4 0.6 7 24-30 17-23 (24)
137 PF10415 FumaraseC_C: Fumarase 26.1 95 0.002 21.9 3.2 34 150-183 10-48 (55)
138 COG4416 Com Mu-like prophage p 25.8 19 0.00041 25.5 -0.4 22 13-34 5-35 (60)
139 COG3001 Uncharacterized protei 25.6 1.3E+02 0.0028 28.4 4.9 42 222-264 201-242 (286)
140 PF08394 Arc_trans_TRASH: Arch 25.5 32 0.0007 22.4 0.7 33 15-50 1-33 (37)
141 PF02829 3H: 3H domain; Inter 24.5 1.4E+02 0.003 23.9 4.3 68 229-298 23-97 (98)
142 PRK12380 hydrogenase nickel in 23.7 38 0.00083 27.6 0.9 22 13-34 71-97 (113)
143 PF14205 Cys_rich_KTR: Cystein 23.7 32 0.00069 24.5 0.4 11 24-34 29-39 (55)
144 PF13719 zinc_ribbon_5: zinc-r 23.4 37 0.0008 21.9 0.6 8 24-31 26-33 (37)
145 PF03477 ATP-cone: ATP cone do 23.0 56 0.0012 24.9 1.7 34 158-191 41-74 (90)
146 PF01155 HypA: Hydrogenase exp 22.7 24 0.00052 28.7 -0.4 23 12-34 70-97 (113)
147 TIGR00100 hypA hydrogenase nic 22.3 43 0.00093 27.4 1.0 22 13-34 71-97 (115)
148 PRK13130 H/ACA RNA-protein com 22.2 60 0.0013 23.2 1.6 29 13-41 6-35 (56)
149 cd01669 TGS_Ygr210_C TGS_Ygr21 22.1 2.2E+02 0.0048 21.4 4.8 48 169-231 27-74 (76)
150 KOG2737 Putative metallopeptid 22.1 2.4E+02 0.0051 28.4 6.1 29 160-188 310-338 (492)
151 KOG2611 Neurochondrin/leucine- 22.1 45 0.00098 34.3 1.3 69 226-294 584-662 (698)
152 smart00834 CxxC_CXXC_SSSS Puta 22.1 45 0.00098 21.3 0.9 19 13-31 6-34 (41)
153 TIGR03516 ppisom_GldI peptidyl 22.0 1.7E+02 0.0038 25.7 4.9 53 219-280 82-140 (177)
154 PF02824 TGS: TGS domain; Int 21.9 1.1E+02 0.0024 21.7 3.0 46 169-231 13-58 (60)
155 PF10013 DUF2256: Uncharacteri 21.8 40 0.00087 22.6 0.6 33 10-48 6-40 (42)
156 smart00739 KOW KOW (Kyprides, 21.6 1.4E+02 0.003 17.0 2.9 22 223-245 2-23 (28)
157 PRK05423 hypothetical protein; 21.0 1.4E+02 0.003 23.8 3.5 27 160-186 43-69 (104)
158 TIGR00354 polC DNA polymerase, 20.9 44 0.00096 37.1 1.0 34 7-43 620-654 (1095)
159 PF04363 DUF496: Protein of un 20.8 3.9E+02 0.0084 21.0 5.8 36 149-185 26-61 (95)
160 PRK07440 hypothetical protein; 20.6 1.6E+02 0.0035 21.7 3.7 32 203-235 34-66 (70)
161 PF09723 Zn-ribbon_8: Zinc rib 20.5 49 0.0011 21.9 0.8 22 13-34 6-37 (42)
162 PF00096 zf-C2H2: Zinc finger, 20.5 49 0.0011 18.2 0.7 11 48-58 13-23 (23)
163 COG0544 Tig FKBP-type peptidyl 20.3 1.8E+02 0.0038 29.7 5.1 44 173-240 132-175 (441)
No 1
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-94 Score=654.78 Aligned_cols=315 Identities=53% Similarity=0.867 Sum_probs=297.9
Q ss_pred ccccccc--cCcccccccchhhhcCCCCCCccccChhhhhhchhHHHHHhhhhccCCCCCCCCCCccccccchhcccCCC
Q 018911 11 TSLSCVR--CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQA 88 (349)
Q Consensus 11 ~~~~c~~--c~~~~~l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (349)
....|.+ |+++|+||||+|+|++|+ .+|||+|+|||.+|..||++|.++. .....+
T Consensus 5 ~~~~c~~~~c~~~a~l~Cp~c~~~~i~--~~~fc~q~cf~~~w~~hK~~h~~~~--------------------~~~~~g 62 (369)
T KOG2738|consen 5 AKISCEGLQCGSEASLQCPTCLKLGIK--SAYFCAQECFKNSWLSHKKLHRKAL--------------------RIRKEG 62 (369)
T ss_pred hhceeeccccCChhhccCchhhhcCCC--cccccCchhhhcchhhhhhhcccch--------------------hhhhhc
Confidence 3457966 999999999999999997 6899999999999999999997540 013456
Q ss_pred CCCCCCCCCcCCCccccCCCCCcccCCcCCCcccccCCCCCcCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018911 89 RTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARM 168 (349)
Q Consensus 89 ~~~~~~~~~~~g~~~p~~~s~~~~vp~~i~~p~ya~~g~~~~e~~~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~ 168 (349)
.++|||.|.|+|+||||++||+|.||++|+||||+++|++.+|+.+.......|++++||+.||+||+|++++|+++..+
T Consensus 63 ~~~p~p~~~~~g~Lr~~pvsprr~VP~hI~rPdya~~g~s~se~~~~~s~~i~i~~~e~ie~mR~ac~LarevLd~Aa~~ 142 (369)
T KOG2738|consen 63 QYNPWPKFRFTGPLRPGPVSPRRPVPDHIPRPDYADSGVSLSEQPEISSNEIKILDPEGIEGMRKACRLAREVLDYAATL 142 (369)
T ss_pred cCCCCccccccCCccccCCCCCCcCCccCCCCchhhcCCcccccccccccceeccCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 78899999999999999999999999999999999999999999888776789999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEEeeeceeCcEEeceeeeE
Q 018911 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETY 248 (349)
Q Consensus 169 i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~ 248 (349)
++||+|++||++++|++++++|+|||||||++||+++|+|+|+++|||+|+.|+|++|||||||++++++|||+|+++||
T Consensus 143 v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGIPD~RpLedGDIvNiDVtvY~~GyHGDlneTf 222 (369)
T KOG2738|consen 143 VRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNETF 222 (369)
T ss_pred cCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheeecCCCCcCcCCCCCEEeEEEEEEeccccCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeeccccccccccCcCCCCcccccccCCCc
Q 018911 249 FVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSC 328 (349)
Q Consensus 249 ~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~~~GHGIG~~~he~P~v~~~~~~~~~~ 328 (349)
+||+++++.++|+++++||++.||+++|||++++||++.|++++.++||+|++.|+|||||..||..|.|++|++|...+
T Consensus 223 fvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~~g~sVVr~ycGHGig~~FH~~PnipHya~n~a~G 302 (369)
T KOG2738|consen 223 FVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSVVRSYCGHGIGRVFHCAPNIPHYAKNKAPG 302 (369)
T ss_pred EeeccCHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhcCceeehhhhccccccccccCCCchhhcccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred ccCCCcEEE--------------EcCCceeeec
Q 018911 329 FAKTGKIVL--------------WSWYWRAVSL 347 (349)
Q Consensus 329 ~Le~Gmv~~--------------le~g~~~~t~ 347 (349)
+|++||+|+ |.|+||.+|.
T Consensus 303 vM~~G~tFTIEPmit~G~~~d~tWPD~WT~vTa 335 (369)
T KOG2738|consen 303 VMKPGQTFTIEPMITIGTWEDITWPDDWTAVTA 335 (369)
T ss_pred eeecCceEEeeeeecccccccccCCCCceEEec
Confidence 999999976 5578888874
No 2
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=3.9e-88 Score=663.46 Aligned_cols=334 Identities=73% Similarity=1.205 Sum_probs=308.9
Q ss_pred CccccccccccccCcccccccchhhhcCCCCCCccccChhhhhhchhHHHHHhhhhccCCCCCCCCCCccccccchhccc
Q 018911 6 DAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKK 85 (349)
Q Consensus 6 ~~~~~~~~~c~~c~~~~~l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (349)
++.++..+.|++|+|+|+||||+|+|+|+|...||||||+|||.+|++||.+|+..+.... .+......+.|.||...
T Consensus 3 ~~~~~~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (396)
T PLN03158 3 EALTTSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKLSSI--GQNSDAPAEGWLYCLKK 80 (396)
T ss_pred cccCCCcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHHHHHHHHhhhhccc--ccccccccccccccccc
Confidence 3456667789999999999999999999987789999999999999999999976432111 11223345579999988
Q ss_pred CCCCCCCCCCCCcCCCccccCCCCCcccCCcCCCcccccCCCCCcCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 018911 86 GQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAA 165 (349)
Q Consensus 86 ~~~~~~~~~~~~~~g~~~p~~~s~~~~vp~~i~~p~ya~~g~~~~e~~~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~ 165 (349)
+...+++||+|.|||+||||++||++.||++|++|+|+.+|.|..+....+++.|.|||++||+.||+|+++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~p~y~~~~~~~~~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a 160 (396)
T PLN03158 81 GQARTSKLPDFDWTGPLRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAA 160 (396)
T ss_pred cccccCCCCCCCCCcccccCCCCCCCCCCccCCCCccccCCCCccccccccccceeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999998877667778899999999999999999999999999
Q ss_pred HHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEEeeeceeCcEEecee
Q 018911 166 ARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLN 245 (349)
Q Consensus 166 ~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~ 245 (349)
.+.++||+||.||+++++++++++|++|+++||.+||+++|+|.|++++|++|++++|++||+|+||++++++||++|++
T Consensus 161 ~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N~~i~Hgip~~r~L~~GDiV~iDvg~~~~GY~aD~t 240 (396)
T PLN03158 161 ARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLN 240 (396)
T ss_pred HHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeecccccccCCCCCCccCCCCCEEEEEEeEEECCEEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeeccccccccccCcCCCCcccccccC
Q 018911 246 ETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVS 325 (349)
Q Consensus 246 RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~~~GHGIG~~~he~P~v~~~~~~~ 325 (349)
|||+||++++++++++++++++++++|+++|||++++||+++++++++++||+++++++|||||+.+||.|.|.++..++
T Consensus 241 RT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~~G~~~v~~~~GHGIG~~~He~P~i~~~~~~~ 320 (396)
T PLN03158 241 ETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYARNK 320 (396)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCccCCccCCccccccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876666
Q ss_pred CCcccCCCcEEEEcCC
Q 018911 326 FSCFAKTGKIVLWSWY 341 (349)
Q Consensus 326 ~~~~Le~Gmv~~le~g 341 (349)
..++|+|||||++||+
T Consensus 321 ~~~~l~~GMVfTIEP~ 336 (396)
T PLN03158 321 AVGVMKAGQVFTIEPM 336 (396)
T ss_pred CCCEecCCcEEEECCe
Confidence 6789999999999976
No 3
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-47 Score=352.82 Aligned_cols=201 Identities=37% Similarity=0.546 Sum_probs=191.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCC-
Q 018911 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD- 219 (349)
Q Consensus 141 ~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~- 219 (349)
.+|+++||+.||+|++|++++++++.+.++||+|+.||+.++++++.++|++|++++|.+||..+|+|.|+.++|++|+
T Consensus 4 ~ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~d 83 (255)
T COG0024 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPGD 83 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccCCCCCeEEEeeeceeCcEEeceeeeEEecCCC-HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCc
Q 018911 220 SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD-EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298 (349)
Q Consensus 220 ~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~-~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~ 298 (349)
+++|++||+|+||+|+.++||++|.++||.||+.+ +..++|.+++++|++++|+.+|||++.+||+++|+++++++||+
T Consensus 84 ~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~~ 163 (255)
T COG0024 84 KKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFS 163 (255)
T ss_pred CcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCE
Confidence 67899999999999999999999999999999766 57778999999999999999999999999999999999999999
Q ss_pred eeeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCC
Q 018911 299 VVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWY 341 (349)
Q Consensus 299 ~v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g 341 (349)
+++.|+|||||..+|+.|.|.+|...+....|+|||||++||.
T Consensus 164 vVr~~~GHgig~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPm 206 (255)
T COG0024 164 VVRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPM 206 (255)
T ss_pred EeecccCCccCcccCCCCeeccccCCCCCcccCCCCEEEEeeE
Confidence 9999999999999999999999866555689999999999864
No 4
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=7.7e-46 Score=345.30 Aligned_cols=204 Identities=26% Similarity=0.354 Sum_probs=193.0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCC
Q 018911 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD 219 (349)
Q Consensus 140 r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~ 219 (349)
..|||++||+.||+|+++++++++++.+.++||+||.||++.++..+.++|+.....+|.+||.++++|+|+.++|+.|+
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n~~~~H~~p~ 81 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFPA 81 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccCCEeecCCCC
Confidence 47999999999999999999999999999999999999999999999999998765556779888999999999999999
Q ss_pred CccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCce
Q 018911 220 SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299 (349)
Q Consensus 220 ~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~ 299 (349)
+++|++||+|++|+++.++||++|++|||++|++++++++++++++++++++++++|||++++||++++++++++.||..
T Consensus 82 ~~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~ 161 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSV 161 (248)
T ss_pred CcccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 300 VMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 300 v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
.++++|||||+.+||.|.+.++.+.++..+|+|||||++||++.
T Consensus 162 ~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~ 205 (248)
T PRK12897 162 ARDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVN 205 (248)
T ss_pred CCCeEECccCCcccCCCccCCCCCCCCCCCcCCCCEEEECCeEe
Confidence 89999999999999999997654455678999999999999986
No 5
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=2.6e-45 Score=347.64 Aligned_cols=205 Identities=20% Similarity=0.313 Sum_probs=192.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCC----ccCCceeeecCCCccc
Q 018911 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY----HFFPKSCCTSVNEVIC 214 (349)
Q Consensus 139 ~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y----~~fp~~v~~g~n~~~~ 214 (349)
|+.|||++||+.||+|++|++++++++.+.++||+||.||++.++..+.++|+.|..+++ .+||.++|+|.|..++
T Consensus 1 m~~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~ 80 (286)
T PRK07281 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVA 80 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEecccccc
Confidence 357999999999999999999999999999999999999999999999999998877654 4699999999999999
Q ss_pred ccCCCCccCCCCCeEEEeeec---------------------------eeCcEEeceeeeEEecCCCHHHHHHHHHHHHH
Q 018911 215 HGIPDSRKLEDGDIVNIDVTV---------------------------YYKGVHGDLNETYFVGNADEASRQLVQCTYEC 267 (349)
Q Consensus 215 H~~p~~r~L~~GDiV~iD~g~---------------------------~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea 267 (349)
|+.|++++|++||+|+||+++ .|+||++|++|||++|++++++++++++++++
T Consensus 81 H~~p~~~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~~l~~~~~ea 160 (286)
T PRK07281 81 HAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEA 160 (286)
T ss_pred CCCCCCcCcCCCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 48999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 268 LEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 268 ~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
++++++++|||++++||+++++++++++||..+++++|||||+.+||.|.+.++...+.+.+|+|||||++||++.
T Consensus 161 ~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~~~~~~GHGIGl~~hE~P~i~~~~~~~~~~~Le~GMV~tiEPgiy 236 (286)
T PRK07281 161 MYRGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMIN 236 (286)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCccCCCeeeeeCCCccCCCCcCCCcccCCCCCEECCCCEEEECCeeE
Confidence 9999999999999999999999999999999888999999999999999987553345678999999999999874
No 6
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1e-44 Score=344.93 Aligned_cols=204 Identities=39% Similarity=0.614 Sum_probs=191.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCc--cCCceeeecCCCcccccC
Q 018911 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH--FFPKSCCTSVNEVICHGI 217 (349)
Q Consensus 140 r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~--~fp~~v~~g~n~~~~H~~ 217 (349)
+.|||++||+.||+|++|++++++++.+.++||+||.||+++++..+.+.|+.|+.++|. +||.++++|.|+.++|+.
T Consensus 41 i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~~g~n~~~~H~~ 120 (291)
T PRK12318 41 IIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGI 120 (291)
T ss_pred eEECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceEeeccceeecCC
Confidence 469999999999999999999999999999999999999999999999999988877764 599899999999999999
Q ss_pred CCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCC
Q 018911 218 PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (349)
Q Consensus 218 p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~ 297 (349)
|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++++||
T Consensus 121 p~~~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~ 200 (291)
T PRK12318 121 PNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGF 200 (291)
T ss_pred CCCCccCCCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 298 SVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 298 ~~v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
..+.+++|||||+.+||.|.+..+ .++.+.+|++||||++||+++.
T Consensus 201 ~~~~~~~GHgIGl~~hE~P~i~~~-~~~~~~~L~~GMV~~iEP~i~~ 246 (291)
T PRK12318 201 SVVDQFVGHGVGIKFHENPYVPHH-RNSSKIPLAPGMIFTIEPMINV 246 (291)
T ss_pred ccCCCcccCCcCccccCCCcccCc-CCCCCCEeCCCCEEEECCEEEc
Confidence 988899999999999999999754 3455789999999999987753
No 7
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=2.2e-44 Score=334.90 Aligned_cols=203 Identities=40% Similarity=0.600 Sum_probs=192.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCC
Q 018911 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDS 220 (349)
Q Consensus 141 ~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~ 220 (349)
+|||++||++||+|++|++++++.+.+.++||+||.||++.++..+.++|+.+...++.+||.++++|.|..++|+.|++
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~H~~~~~ 81 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCISVNEVVIHGIPDK 81 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEeccccEEEecCCCC
Confidence 78999999999999999999999999999999999999999999999999988777778899999999999999999999
Q ss_pred ccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCcee
Q 018911 221 RKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300 (349)
Q Consensus 221 r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v 300 (349)
++|++||+|++|+++.|+||++|++|||++|+++++++++++++.++++++++.+|||++++||++++++++++.||...
T Consensus 82 ~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~ 161 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV 161 (247)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 301 MHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 301 ~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
.+++|||||+.+||.|.+..+...+++.+|++||||++||++.
T Consensus 162 ~~~~GHgiG~~~~e~p~i~~~~~~~~~~~l~~gmv~~iEp~i~ 204 (247)
T TIGR00500 162 REYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVN 204 (247)
T ss_pred cCccCCccCcccCCCCccCCcCcCCCCCEecCCCEEEEeeEEE
Confidence 8899999999999999886543345678999999999999864
No 8
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=2.8e-43 Score=328.61 Aligned_cols=206 Identities=33% Similarity=0.506 Sum_probs=192.1
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccC
Q 018911 138 HVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI 217 (349)
Q Consensus 138 ~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~ 217 (349)
+++.|||++||+.||+|+++++++++.+.+.++||+||.||++.+++.+.++|+.+++..+.+||.++++|.|..++|+.
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~h~~ 85 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVNEEVAHGI 85 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCCCeeEecC
Confidence 35789999999999999999999999999999999999999999999999999998877788899999999999999999
Q ss_pred CCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCC
Q 018911 218 PDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297 (349)
Q Consensus 218 p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~ 297 (349)
|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||++++++++++.||
T Consensus 86 p~~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~ 165 (255)
T PRK12896 86 PGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGY 165 (255)
T ss_pred CCCccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccccccccCcCCCCccc-ccccCCCcccCCCcEEEEcCCce
Q 018911 298 SVVMHNVWFAIVIHCYSTEDTKQ-CLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 298 ~~v~~~~GHGIG~~~he~P~v~~-~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
...++++|||||+.+||.|.+.. +...+.+.+|++||||++||+.+
T Consensus 166 ~~~~~~~GHgiG~~~he~p~~~~~~~~~~~~~~le~GmV~~iEp~i~ 212 (255)
T PRK12896 166 SVVRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLN 212 (255)
T ss_pred EeccCcccCCcCcccccCCCccccCCCCCCCCEecCCcEEEEeceEE
Confidence 98889999999999999996542 22344578999999999887653
No 9
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=6.2e-43 Score=325.71 Aligned_cols=205 Identities=41% Similarity=0.623 Sum_probs=193.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCC
Q 018911 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (349)
Q Consensus 139 ~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p 218 (349)
+.+|||++||+.||+|++|++++++.+.+.++||+||.||++.+...+.++|+.+.+.++..||.++++|.|+.++|+.|
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~h~~~ 81 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTSVNEVVCHGIP 81 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEecccceeecCCC
Confidence 35799999999999999999999999999999999999999999999999999877666778888899999999999999
Q ss_pred CCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCc
Q 018911 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 298 (349)
Q Consensus 219 ~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~ 298 (349)
++++|++||+|.+|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++++|+.
T Consensus 82 ~~~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~ 161 (252)
T PRK05716 82 SDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFS 161 (252)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 299 VVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 299 ~v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
..++++|||||+.+||.|.+..+.+.+++.+|||||||++||++.
T Consensus 162 ~~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~vEp~i~ 206 (252)
T PRK05716 162 VVREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMIN 206 (252)
T ss_pred eecCccccccCCccCCCCccCcCCCCCCCCEecCCCEEEEccEEE
Confidence 888999999999999999886554456688999999999998875
No 10
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=1.1e-41 Score=333.65 Aligned_cols=200 Identities=22% Similarity=0.301 Sum_probs=185.4
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccc
Q 018911 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (349)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H 215 (349)
...+|+|||++||+.||+|++|++++++.+.+.++||+||.||++.++..+.++|+.+. +|+++|++|.|...+|
T Consensus 121 ~~~lR~iKs~~Ei~~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~-----~f~~iv~sG~~~~~ph 195 (361)
T PRK09795 121 PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVASGWRGALPH 195 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcC-----CCCeEEEEeccccccC
Confidence 45699999999999999999999999999999999999999999999999999998763 5889999999999999
Q ss_pred cCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEecC--CCH---HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 018911 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN--ADE---ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINR 290 (349)
Q Consensus 216 ~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~--~~~---e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~ 290 (349)
+.|++++|++||+|++|+++.|+||++|++|||++|. +++ +++++|+++.++++++++++|||++++||++++++
T Consensus 196 ~~~~~~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~ 275 (361)
T PRK09795 196 GKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARR 275 (361)
T ss_pred CCCCCceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999963 333 37899999999999999999999999999999999
Q ss_pred HHHHcCCce-eeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 291 HATMSGFSV-VMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 291 ~~~~~G~~~-v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
++++.||.. +.|.+|||||+.+||.|.+. .+++.+|+|||||++|||+..
T Consensus 276 ~~~~~g~~~~~~h~~GHgiGl~~he~p~i~----~~~~~~l~~gmv~~iEpgiy~ 326 (361)
T PRK09795 276 VITEAGYGDYFGHNTGHAIGIEVHEDPRFS----PRDTTTLQPGMLLTVEPGIYL 326 (361)
T ss_pred HHHHcCCCccCCCCCCccCCccccCCCCcC----CCCCCCcCCCCEEEECCEEEe
Confidence 999999985 57899999999999999886 345789999999999998753
No 11
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-41 Score=332.95 Aligned_cols=206 Identities=24% Similarity=0.363 Sum_probs=190.8
Q ss_pred CCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCC
Q 018911 131 EPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVN 210 (349)
Q Consensus 131 e~~~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n 210 (349)
+.....+++|+|||+.||+.||+|+++++.++..+++.++||+||.||.+.++.++.+.|+... +|+++|++|.|
T Consensus 143 ~~~~~i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~~-----sf~~iv~~G~n 217 (384)
T COG0006 143 DASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGP-----SFDTIVASGEN 217 (384)
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCcc-----CcCcEEecccc
Confidence 3344456799999999999999999999999999999999999999999999999999996642 48999999999
Q ss_pred CcccccCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 018911 211 EVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINR 290 (349)
Q Consensus 211 ~~~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~ 290 (349)
.+++|+.|+++.+++||+|+||+|+.|+||++|+||||++|+++++++++|+.++++++++++++|||++++||+.++++
T Consensus 218 ~a~pH~~~~~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~ 297 (384)
T COG0006 218 AALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQ 297 (384)
T ss_pred ccCcCCCCCcccccCCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCce-eecccccccc--ccCcCCCC-cccccccCCCcccCCCcEEEEcCCceee
Q 018911 291 HATMSGFSV-VMHNVWFAIV--IHCYSTED-TKQCLVVSFSCFAKTGKIVLWSWYWRAV 345 (349)
Q Consensus 291 ~~~~~G~~~-v~~~~GHGIG--~~~he~P~-v~~~~~~~~~~~Le~Gmv~~le~g~~~~ 345 (349)
++.+.|+.. +.+.+|||+| +..||.|. +. .+.+.+|+|||||++|||+...
T Consensus 298 ~i~~~g~~~~~~h~~GHgvG~~l~vhE~p~~~~----~~~~~~L~~GMv~t~Epg~y~~ 352 (384)
T COG0006 298 VLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYLS----PGSDTTLEPGMVFSIEPGIYIP 352 (384)
T ss_pred HHHhcCCcccccCCccccCCCCcccCcCccccC----CCCCccccCCcEEEeccccccC
Confidence 999998875 5678999999 99999995 44 4568999999999999986543
No 12
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=6.4e-40 Score=302.98 Aligned_cols=196 Identities=45% Similarity=0.639 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCC
Q 018911 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 148 Ie~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|+.||+|+++++++++++.+.++||+||.||++.+.+.+.++|+.+..+++..||..+++|.|+.++|+.|++++|++||
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~l~~Gd 80 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD 80 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCCCCCcccCCCC
Confidence 68999999999999999999999999999999999999999999988777888998899999999999999999999999
Q ss_pred eEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeecccccc
Q 018911 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFA 307 (349)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~~~GHG 307 (349)
+|.+|+++.++||++|++|||++|+++++++++++.+.++++++++++|||++++||++++++++++.|+....+++|||
T Consensus 81 ~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~~~~~GHg 160 (238)
T cd01086 81 IVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHG 160 (238)
T ss_pred EEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcceecCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred ccccCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 308 IVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 308 IG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
||+.+||.|.+..+...+++.+|++||||++||+..
T Consensus 161 iG~~~~e~p~~~~~~~~~~~~~le~Gmv~~iep~i~ 196 (238)
T cd01086 161 IGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMIN 196 (238)
T ss_pred CCCccccCCCcCCccCCCCCCEecCCCEEEEeeEEE
Confidence 999999999886444456789999999999998764
No 13
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=1.5e-39 Score=299.44 Aligned_cols=197 Identities=18% Similarity=0.163 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCC-CCccCCceeeecCCCcccccCCCCccCCCC
Q 018911 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL-NYHFFPKSCCTSVNEVICHGIPDSRKLEDG 226 (349)
Q Consensus 148 Ie~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l-~y~~fp~~v~~g~n~~~~H~~p~~r~L~~G 226 (349)
|++||+|++|++++++++.+.++||+||.||++.+++++.+.|+...+. .+..+.+++.+|.|+..+|+.|++++|++|
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G~~~~~~H~~~~~r~l~~G 80 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRG 80 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEeeccccccCCCCCCcccCCC
Confidence 6899999999999999999999999999999999999999998753222 233333578999999999999999999999
Q ss_pred CeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCcee-ecccc
Q 018911 227 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV-MHNVW 305 (349)
Q Consensus 227 DiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v-~~~~G 305 (349)
|+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++++||..+ .+.+|
T Consensus 81 D~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~~~~G 160 (228)
T cd01090 81 DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTFGYG 160 (228)
T ss_pred CEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865 56799
Q ss_pred ccccccCcCCCCcc-cccccCCCcccCCCcEEEEcCCcee
Q 018911 306 FAIVIHCYSTEDTK-QCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 306 HGIG~~~he~P~v~-~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
||||+.+|+.|.-. .....+.+.+|+|||||++||++..
T Consensus 161 HgiGl~~he~~~~~g~~~~~~~~~~Le~GMV~~iEP~i~~ 200 (228)
T cd01090 161 HSFGVLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIML 200 (228)
T ss_pred cccccccccCCCccccccCCCCCCccCCCCEEEECCEEee
Confidence 99999999876311 0112455789999999999998864
No 14
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=1.3e-39 Score=314.45 Aligned_cols=202 Identities=20% Similarity=0.274 Sum_probs=180.6
Q ss_pred CCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCc
Q 018911 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV 212 (349)
Q Consensus 133 ~~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~ 212 (349)
...++++|+|||++||+.||+|+++++++++.+.+.++||+||.||++.++.++.+.|... +..|+ ++.+|.+ .
T Consensus 86 ~~~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~~----~~~~~-~i~~G~~-~ 159 (323)
T PRK15173 86 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETH----FSRFH-LISVGAD-F 159 (323)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCC----CCCCc-EEEECCC-C
Confidence 3445679999999999999999999999999999999999999999999998888876532 11233 5666766 5
Q ss_pred ccccCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 018911 213 ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292 (349)
Q Consensus 213 ~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~ 292 (349)
.+|+.|++++|++||+|++|+++.|+||++|++|||++|+++++++++|+++.++++++++++|||++++||++++++++
T Consensus 160 ~~h~~~~~~~l~~Gd~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~ 239 (323)
T PRK15173 160 SPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVI 239 (323)
T ss_pred ccCCCCCCCccCCCCEEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCc-eeeccccccccc--cCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 293 TMSGFS-VVMHNVWFAIVI--HCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 293 ~~~G~~-~v~~~~GHGIG~--~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
++.|+. ..++++|||||+ .+||.|.+.. +++.+|+|||||++||++..
T Consensus 240 ~~~G~~~~~~~~~GHGiG~~lg~~E~P~i~~----~~~~~Le~GMV~tiEPgiy~ 290 (323)
T PRK15173 240 KKSGLPNYNRGHLGHGNGVFLGLEESPFVST----HATESFTSGMVLSLETPYYG 290 (323)
T ss_pred HHcCCccccCCCCCCcCCCCCCcCCCCCCCC----CCCCccCCCCEEEECCEEEc
Confidence 999997 456899999996 8899998863 35789999999999998653
No 15
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=5.9e-40 Score=324.57 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=178.4
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH----cCCCCCCCCCccCCceeee
Q 018911 132 PNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATIT----AGGYPSPLNYHFFPKSCCT 207 (349)
Q Consensus 132 ~~~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~----~G~~ps~l~y~~fp~~v~~ 207 (349)
....+.++|+|||++||+.||+|++|++.+++.+.+.++||+||.||++.+...... .|+. +..|..++.+
T Consensus 148 ~~~~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~~~~~g~~-----~~~~~~iv~s 222 (391)
T TIGR02993 148 ATALVNWQRAVKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIRGVDGFGGD-----YPAIVPLLPS 222 (391)
T ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhcccCcCCC-----cCCccccccc
Confidence 334456799999999999999999999999999999999999999999988655432 1221 1235567889
Q ss_pred cCCCcccccCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 018911 208 SVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEV 287 (349)
Q Consensus 208 g~n~~~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~ 287 (349)
|.|...+|+.|++++|++||+|+||+++.|+||++|++|||++|+++++++++++++.++++++++++|||++++||+++
T Consensus 223 G~~~a~pH~~~~~~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~ 302 (391)
T TIGR02993 223 GADASAPHLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANA 302 (391)
T ss_pred CccccCCCCCCCCCcccCCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeeccccccccccCcCC-----CCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 288 INRHATMSGFSVVMHNVWFAIVIHCYST-----EDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 288 i~~~~~~~G~~~v~~~~GHGIG~~~he~-----P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
++++++++||.. .|++|||||+.+|+. |.+. .+++.+|++||||++|||...
T Consensus 303 ~~~~~~~~G~~~-~h~~GhgiGl~~~~~~~e~~~~l~----~~~~~~L~~GMv~tvEpgiy~ 359 (391)
T TIGR02993 303 FFAVLKKYGIHK-DSRTGYPIGLSYPPDWGERTMSLR----PGDNTVLKPGMTFHFMTGLWM 359 (391)
T ss_pred HHHHHHHcCCcc-CCCceeeeccCcCCCCCCcccccc----CCCCceecCCCEEEEcceeEe
Confidence 999999999975 588999999998742 2343 456789999999999998753
No 16
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=5.1e-39 Score=321.82 Aligned_cols=200 Identities=21% Similarity=0.292 Sum_probs=181.0
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccc
Q 018911 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (349)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H 215 (349)
+..+|+|||++||+.||+|++++..++.++++.++||+||.||++.+...+.++|+... .|+.+|++|.|..++|
T Consensus 167 l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~~-----~~~~iv~~G~na~~~H 241 (438)
T PRK10879 167 VHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYP-----SYNTIVGSGENGCILH 241 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCCC-----CCCcEEEEcCcccccc
Confidence 45689999999999999999999999999999999999999999999999999997632 4788999999999999
Q ss_pred cCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEe-cCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-
Q 018911 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT- 293 (349)
Q Consensus 216 ~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~- 293 (349)
+.|++++|++||+|+||+|+.++||++|++|||+| |+++++++++|++++++++++++++|||+++++|++++.+++.
T Consensus 242 ~~~~~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~ 321 (438)
T PRK10879 242 YTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVS 321 (438)
T ss_pred CCCCccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999999999987654
Q ss_pred -----------------HcCCc-eeeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 294 -----------------MSGFS-VVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 294 -----------------~~G~~-~v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
+.++. .+.|.+|||||+.+|+.|.+. .+.+.+|+|||||++|||+..
T Consensus 322 ~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~~~~~----~~~~~~L~~GmV~tvEPgiY~ 386 (438)
T PRK10879 322 GLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDVGVYG----QDRSRILEPGMVLTVEPGLYI 386 (438)
T ss_pred HHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcCCCcC----CCCCCcCCCCCEEEECCEEEE
Confidence 33443 256789999999999988764 235689999999999999864
No 17
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=5.6e-39 Score=297.82 Aligned_cols=189 Identities=22% Similarity=0.291 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCC
Q 018911 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 148 Ie~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|++||+|+++++++++++.+.++||+||.||++.++..+.+.|+.+ .|+.++++|.|...+|+.|++++|++||
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~~------~~~~~v~~g~~~~~~H~~~~~~~l~~Gd 74 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL------AYSYIVAAGSNAAILHYVHNDQPLKDGD 74 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCCc------CCCCeEEECCCccccCCCcCCCcCCCCC
Confidence 6899999999999999999999999999999999999999999873 3788899999999999999999999999
Q ss_pred eEEEeeeceeCcEEeceeeeEEe-cCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCC---------
Q 018911 228 IVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF--------- 297 (349)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~v-G~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~--------- 297 (349)
+|+||+++.|+||++|++|||++ |+++++++++++++.++++++++++|||++++||++++++++++.|+
T Consensus 75 ~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~ 154 (243)
T cd01087 75 LVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDV 154 (243)
T ss_pred EEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCch
Confidence 99999999999999999999999 68999999999999999999999999999999999999999987633
Q ss_pred ----------ceeeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 298 ----------SVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 298 ----------~~v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
..+.|.+|||||+.+||.|.+.. ..+.+.+|++||||++||++..
T Consensus 155 ~~~~~~~~~~~~~~h~~GhgiGl~~~e~p~~~~--~~~~~~~l~~GMv~~iEp~iy~ 209 (243)
T cd01087 155 DEIVESGAYAKFFPHGLGHYLGLDVHDVGGYLR--YLRRARPLEPGMVITIEPGIYF 209 (243)
T ss_pred HhhhhhhhhhhhcCCCCccccCcccccCccccc--cCCCCCCCCCCCEEEECCEEEe
Confidence 23567899999999999997721 2346789999999999998864
No 18
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=5.7e-39 Score=318.87 Aligned_cols=203 Identities=20% Similarity=0.261 Sum_probs=182.1
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCC
Q 018911 132 PNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE 211 (349)
Q Consensus 132 ~~~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~ 211 (349)
....+.++|+|||++||+.||+|+++++++++++.+.++||+||.||++.++.++.+.|.... ..| .++.+|.+
T Consensus 168 ~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~----~~~-~~v~~G~~- 241 (406)
T PRK14575 168 SSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHF----SRF-HLISVGAD- 241 (406)
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcC----CcC-ceEEECCC-
Confidence 334456799999999999999999999999999999999999999999999999888776431 112 35677776
Q ss_pred cccccCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 018911 212 VICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH 291 (349)
Q Consensus 212 ~~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~ 291 (349)
..+|+.|++++|++||+|++|+++.|+||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++
T Consensus 242 ~~~h~~~~~~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~ 321 (406)
T PRK14575 242 FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEV 321 (406)
T ss_pred cccCCCCCCCcCCCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCce-eeccccccccc--cCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 292 ATMSGFSV-VMHNVWFAIVI--HCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 292 ~~~~G~~~-v~~~~GHGIG~--~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
+++.||.. .++++|||||+ .+||.|.+.. +++.+|+|||||++||++..
T Consensus 322 ~~~~G~~~~~~~~~GHGiG~~lg~~e~P~i~~----~~~~~Le~GMv~tiEpgiy~ 373 (406)
T PRK14575 322 IKKSGLPNYNRGHLGHGNGVFLGLEESPFVST----HATESFTSGMVLSLETPYYG 373 (406)
T ss_pred HHHcCCccccCCCCCCcccCCCCCccCCCCCC----CCCCCcCCCCEEEECCeeec
Confidence 99999974 56899999995 8999998873 45789999999999998654
No 19
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=6.7e-39 Score=318.27 Aligned_cols=201 Identities=19% Similarity=0.233 Sum_probs=182.2
Q ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcc
Q 018911 134 SDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVI 213 (349)
Q Consensus 134 ~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~ 213 (349)
..+.++|+|||++||+.||+|++++++++..+.+.++||+||.||++.++..+.+.|... +..| .++++|.| ..
T Consensus 169 ~~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~----~~~~-~~v~~G~~-~~ 242 (405)
T PRK14576 169 ALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETN----FSRF-NLISVGDN-FS 242 (405)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCc----CCCC-CEEEECCc-cc
Confidence 345679999999999999999999999999999999999999999999999999887531 1113 47888888 56
Q ss_pred cccCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 018911 214 CHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (349)
Q Consensus 214 ~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~ 293 (349)
+|+.|++++|++||+|++|+++.++||++|++|||++|+++++++++++++.++++++++++|||++++||+++++++++
T Consensus 243 ~h~~~~~~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~ 322 (405)
T PRK14576 243 PKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIK 322 (405)
T ss_pred CCCCCCCcccCCCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCce-eecccccccc--ccCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 294 MSGFSV-VMHNVWFAIV--IHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 294 ~~G~~~-v~~~~GHGIG--~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
+.||.. ..+++||||| +.+||.|.+. .+++.+|++||||+|||++..
T Consensus 323 ~~G~~~~~~~~~GHgiG~~l~~~e~P~i~----~~~~~~Le~GMv~~vEp~~y~ 372 (405)
T PRK14576 323 TSGLPHYNRGHLGHGDGVFLGLEEVPFVS----TQATETFCPGMVLSLETPYYG 372 (405)
T ss_pred HcCCccccCCCCCCCCCCCCCcCcCCCcC----CCCCCccCCCCEEEECCceee
Confidence 999974 4678999999 7899999875 345789999999999998654
No 20
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=1.1e-37 Score=281.31 Aligned_cols=187 Identities=23% Similarity=0.358 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCC
Q 018911 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 148 Ie~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|++||+|+++++.++.++.+.++||+||.||++.++..+.++|+++ ..||+++++|.|...+|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~-----~~~~~~v~~g~~~~~~h~~~~~~~l~~gd 75 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEG-----PSFDTIVASGPNSALPHGVPSDRKIEEGD 75 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC-----CCCCcEEEECccccccCCCCCCcCcCCCC
Confidence 6899999999999999999999999999999999999999999874 25899999999999999999999999999
Q ss_pred eEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCce-eeccccc
Q 018911 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-VMHNVWF 306 (349)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~-v~~~~GH 306 (349)
+|+||+++.++||++|++|||++|+++++++++++.+.++++.+++.+|||++++||+++++++++++|+.. ..+.+||
T Consensus 76 ~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~~~Gh 155 (208)
T cd01092 76 LVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGH 155 (208)
T ss_pred EEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 4678999
Q ss_pred cccccCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 307 AIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 307 GIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
|||+.+||.|.+. .+++.+|++||||++++++.
T Consensus 156 ~iG~~~~e~p~i~----~~~~~~l~~gmv~~iep~~~ 188 (208)
T cd01092 156 GVGLEVHEAPYIS----PGSDDVLEEGMVFTIEPGIY 188 (208)
T ss_pred ccCcccCcCCCcC----CCCCCCcCCCCEEEECCeEE
Confidence 9999999999875 34578999999999999985
No 21
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=100.00 E-value=7.4e-37 Score=276.32 Aligned_cols=186 Identities=27% Similarity=0.383 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH-HHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCC
Q 018911 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA-TITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 149 e~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~-~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|+||+|++|++++++++.+.++||+||.||.+.+.++ +.++|... .+||.++++|.|..++|+.|++++|++||
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~l~~gd 75 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEE-----PAFPPIVGSGPNTDLPHYTPTDRRLQEGD 75 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTE-----ESSESEEEECCCCGETTTBCCSSBESTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCc-----ccCCceEecCCcceecceeccceeeecCC
Confidence 6899999999999999999999999999999999998 56667432 35788999999999999999999999999
Q ss_pred eEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCC-ceeeccccc
Q 018911 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVMHNVWF 306 (349)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~-~~v~~~~GH 306 (349)
+|+||+++.|+||++|++|||++| ++++++++++.++++++.+++.+|||++++||+++++++++++|| ..+.+.+||
T Consensus 76 ~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~~~~GH 154 (207)
T PF00557_consen 76 IVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYPHGLGH 154 (207)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBTSSSEE
T ss_pred cceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceeeecccc
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999 667889999
Q ss_pred cccccCcCC-CCcccccccCCCcccCCCcEEEEcCCce
Q 018911 307 AIVIHCYST-EDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 307 GIG~~~he~-P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
|||+.+|+. |.+.. .+.+.+|++||||++++++.
T Consensus 155 ~iG~~~~~~~P~i~~---~~~~~~l~~gmv~~iep~~~ 189 (207)
T PF00557_consen 155 GIGLEFHEPGPNIAR---PGDDTVLEPGMVFAIEPGLY 189 (207)
T ss_dssp EESSSSSEEEEEESS---TTTSSB--TTBEEEEEEEEE
T ss_pred cccccccccceeeec---ccccceecCCCceeEeeeEE
Confidence 999999997 88752 45688999999999999654
No 22
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=1.1e-36 Score=304.91 Aligned_cols=203 Identities=16% Similarity=0.132 Sum_probs=171.7
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccc
Q 018911 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (349)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H 215 (349)
+..+|+|||++||+.||+|++++.++++.+++.++||+||.||++.+.... ..++ . ...|+.++++|.|..++|
T Consensus 155 l~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~--~---~~~y~~iva~G~naa~~H 228 (443)
T PRK13607 155 LHYHRAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRD--N---DVPYGNIVALNEHAAVLH 228 (443)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCC--c---CCCCCcEEEecCcceEec
Confidence 356899999999999999999999999999999999999999998654332 2222 1 135889999999999999
Q ss_pred cCCCCc-cCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH--
Q 018911 216 GIPDSR-KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA-- 292 (349)
Q Consensus 216 ~~p~~r-~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~-- 292 (349)
+.++++ ++++||+|+||+|+.++||++|++|||+ |+++++++++++++.+|++++++++|||++++||+.++++++
T Consensus 229 ~~~~~~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~ 307 (443)
T PRK13607 229 YTKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAK 307 (443)
T ss_pred CCccCCCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999875 6899999999999999999999999999 888999999999999999999999999999999999998766
Q ss_pred --HHcCCc----------------eeeccccccccccCcCCCCcccc------------cccCCCcccCCCcEEEEcCCc
Q 018911 293 --TMSGFS----------------VVMHNVWFAIVIHCYSTEDTKQC------------LVVSFSCFAKTGKIVLWSWYW 342 (349)
Q Consensus 293 --~~~G~~----------------~v~~~~GHGIG~~~he~P~v~~~------------~~~~~~~~Le~Gmv~~le~g~ 342 (349)
.+.|+. .+.|.+|||||+.+|+.+.+... +.-....+|+|||||++|||.
T Consensus 308 ~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGi 387 (443)
T PRK13607 308 LLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGL 387 (443)
T ss_pred HHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCCcccccccccccccccccccccCCcCCCCcEEEECCee
Confidence 445443 35688999999999998543210 001235799999999999998
Q ss_pred eee
Q 018911 343 RAV 345 (349)
Q Consensus 343 ~~~ 345 (349)
...
T Consensus 388 Y~~ 390 (443)
T PRK13607 388 YFI 390 (443)
T ss_pred eeC
Confidence 763
No 23
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=100.00 E-value=2e-36 Score=297.93 Aligned_cols=201 Identities=19% Similarity=0.232 Sum_probs=177.0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCC------CccCCceeeecCCCcc
Q 018911 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLN------YHFFPKSCCTSVNEVI 213 (349)
Q Consensus 140 r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~------y~~fp~~v~~g~n~~~ 213 (349)
-.+|+++||+.||+|++|++++++.+.+.++||+|+.||++.+++++.++++. .+.+ ...|| +|+++|+.+
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~-~~~~~~~~~~g~afp--t~vSvN~~v 87 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAK-IFKKEKEMEKGIAFP--TCISVNNCV 87 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh-hhcccccccCCCCCC--eEEecCCee
Confidence 37899999999999999999999999999999999999999999999887653 2111 23455 667799999
Q ss_pred cccCC--C--CccCCCCCeEEEeeeceeCcEEeceeeeEEecC-----CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Q 018911 214 CHGIP--D--SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREI 284 (349)
Q Consensus 214 ~H~~p--~--~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~-----~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI 284 (349)
+|++| + ++.|++||+|+||+|+.++||++|++|||+||+ ++++++++++++++|++++|+++|||++.+||
T Consensus 88 ~H~~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~dI 167 (389)
T TIGR00495 88 GHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQV 167 (389)
T ss_pred eCCCCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 99999 2 488999999999999999999999999999995 56789999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceeeccccccccccCcC-CCCc-cccc----ccCCCcccCCCcEEEEcCCce
Q 018911 285 GEVINRHATMSGFSVVMHNVWFAIVIHCYS-TEDT-KQCL----VVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 285 ~~~i~~~~~~~G~~~v~~~~GHGIG~~~he-~P~v-~~~~----~~~~~~~Le~Gmv~~le~g~~ 343 (349)
+++++++++++||.++++++|||||..+|+ .|.| .++. .......|++||||++|+..+
T Consensus 168 ~~ai~~v~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs 232 (389)
T TIGR00495 168 TEAINKVAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVS 232 (389)
T ss_pred HHHHHHHHHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeec
Confidence 999999999999999999999999999998 6775 4331 112357899999999999765
No 24
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=100.00 E-value=1.4e-35 Score=294.74 Aligned_cols=195 Identities=18% Similarity=0.151 Sum_probs=173.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHc----CCCCCCCCCccCCceeeecCCCccc
Q 018911 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA----GGYPSPLNYHFFPKSCCTSVNEVIC 214 (349)
Q Consensus 139 ~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~----G~~ps~l~y~~fp~~v~~g~n~~~~ 214 (349)
.+..+|++||+.||+|++|++++++.+.+.++||+|+.||+..++..+.+. |+.. ..+||+ ++|.|++.+
T Consensus 149 ~~~~~s~~EI~~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~----g~aFPt--~vS~N~~aa 222 (470)
T PTZ00053 149 ELEKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKC----GWAFPT--GCSLNHCAA 222 (470)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcc----cCCCCc--eeecCcccc
Confidence 345589999999999999999999999999999999999999888876554 5432 246996 558999999
Q ss_pred ccCCC---CccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 018911 215 HGIPD---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH 291 (349)
Q Consensus 215 H~~p~---~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~ 291 (349)
|++|+ +++|++||+|+||+|+.++||++|++|||++| ++++++++++++|++++|++++||++++||+++++++
T Consensus 223 H~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqev 299 (470)
T PTZ00053 223 HYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEV 299 (470)
T ss_pred CCCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99996 68899999999999999999999999999997 6899999999999999999999999999999999999
Q ss_pred HHHcCCc---------eeeccccccccc-cCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 292 ATMSGFS---------VVMHNVWFAIVI-HCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 292 ~~~~G~~---------~v~~~~GHGIG~-~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
++++||. ++++++|||||+ .+|+.|.++.+ ..+...+|++||||++|+..+
T Consensus 300 ies~G~e~~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v-~~~~~~~LeeGmVfaIEPf~s 360 (470)
T PTZ00053 300 IESYEVEIKGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIV-KGGENTRMEEGELFAIETFAS 360 (470)
T ss_pred HHHcCCcccCcccccccccCCcccCCCCccccCCCcCCee-CCCCCCEecCCCEEEEcceee
Confidence 9999974 468999999997 89998777765 345678999999999998754
No 25
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00 E-value=1.1e-35 Score=273.09 Aligned_cols=188 Identities=14% Similarity=0.108 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCC---CccC
Q 018911 149 ERMRETCRIAREVLDAAARMIRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (349)
Q Consensus 149 e~~R~Aa~ia~~al~~~~~~i~pG--~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~---~r~L 223 (349)
+.||.+..+ .++++.+.+.++|| +||.||++.+++++.+.|.++. ..||.+|++|+|+.++|+.|+ +++|
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~----~~f~~~v~~g~n~~~~H~~p~~~~~r~l 79 (224)
T cd01085 5 AHIRDGVAL-VEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVG----LSFDTISGFGPNGAIVHYSPTEESNRKI 79 (224)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcC----CCcceEEEecCccCcCCCCcCcccCccc
Confidence 456666666 49999999999999 9999999999988877765432 258999999999999999999 9999
Q ss_pred CCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHcCCceeec
Q 018911 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVK-PGVRFREIGEVINRHATMSGFSVVMH 302 (349)
Q Consensus 224 ~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lk-PG~~~~eI~~~i~~~~~~~G~~~v~~ 302 (349)
++||+|+||+++.++||++|++|||++|+++++++++++.+++++.++++.++ ||+++++|++++++++.+.|+. +.+
T Consensus 80 ~~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~-~~h 158 (224)
T cd01085 80 SPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLD-YGH 158 (224)
T ss_pred CCCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC-CCC
Confidence 99999999999999999999999999999999999999999999999999884 9999999999999999999986 567
Q ss_pred ccccccc--ccCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 303 NVWFAIV--IHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 303 ~~GHGIG--~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
++||||| +.+||.|.+. + ..+.+.+|+|||||++||++..
T Consensus 159 ~~GHgIG~~l~~hE~P~i~-~-~~~~~~~L~~GmvftiEP~iy~ 200 (224)
T cd01085 159 GTGHGVGSFLNVHEGPQSI-S-PAPNNVPLKAGMILSNEPGYYK 200 (224)
T ss_pred CCCCCCCCCCcCCCCCCcC-C-cCCCCCCcCCCCEEEECCEeEe
Confidence 8999999 5889999874 1 2345789999999999999875
No 26
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00 E-value=3e-35 Score=262.89 Aligned_cols=187 Identities=28% Similarity=0.426 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCC
Q 018911 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 148 Ie~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
|+.||+|+++++.+++.+.+.++||+||.||.+.+++.+.++|+++ .|+.++.+|.|..++|+.|++++|++||
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~------~~~~~v~~g~~~~~~h~~~~~~~i~~gd 74 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP------AGPTIVGSGARTALPHYRPDDRRLQEGD 74 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCC------CCCcEEEECccccCcCCCCCCCCcCCCC
Confidence 5789999999999999999999999999999999999999999843 3777888888889999999999999999
Q ss_pred eEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCC-ceeeccccc
Q 018911 228 IVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVMHNVWF 306 (349)
Q Consensus 228 iV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~-~~v~~~~GH 306 (349)
+|++|+++.++||++|++|||++|+++++++++++.+.++++.+++.+|||+++.||++++++++++.|+ ....+++||
T Consensus 75 ~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~~~~Gh 154 (207)
T cd01066 75 LVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGH 154 (207)
T ss_pred EEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 567899999
Q ss_pred cccccCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 307 AIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 307 GIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
|||+.+|+.|.+. ...+.+|++||||++++++..
T Consensus 155 ~iG~~~~e~~~~~----~~~~~~l~~gmv~~iep~~~~ 188 (207)
T cd01066 155 GIGLEIHEPPVLK----AGDDTVLEPGMVFAVEPGLYL 188 (207)
T ss_pred ccCcccCCCCCcC----CCCCCCcCCCCEEEECCEEEE
Confidence 9999999999854 345789999999999999865
No 27
>PRK08671 methionine aminopeptidase; Provisional
Probab=100.00 E-value=2.9e-35 Score=280.21 Aligned_cols=185 Identities=26% Similarity=0.379 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCC---CccC
Q 018911 147 QIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SRKL 223 (349)
Q Consensus 147 EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~---~r~L 223 (349)
+|++||+|++|++++++.+.+.++||+||.||++.+++.+.++|+.++ ||..+ +.|+..+|+.|. +++|
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g~~~a------fp~~v--s~n~~~~H~~p~~~d~~~l 72 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FPCNI--SINEVAAHYTPSPGDERVF 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCccC------CCCEE--eeCCCccCCCCCCCCCccc
Confidence 589999999999999999999999999999999999999999998765 88554 568888999986 6889
Q ss_pred CCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeecc
Q 018911 224 EDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHN 303 (349)
Q Consensus 224 ~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~~ 303 (349)
++||+|+||+|+.++||++|++||+++| ++++++++++.+|++++++.+|||++++||+++++++++++||..+.++
T Consensus 73 ~~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~~~~ 149 (291)
T PRK08671 73 PEGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNL 149 (291)
T ss_pred CCCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccCCC
Confidence 9999999999999999999999999999 4788999999999999999999999999999999999999999988899
Q ss_pred ccccccc-cCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 304 VWFAIVI-HCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 304 ~GHGIG~-~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
+|||||+ .+|+.|.++.. ..+.+.+|++||||++||..+
T Consensus 150 ~GHgiG~~~~he~p~ip~~-~~~~~~~le~GmV~aIEp~~t 189 (291)
T PRK08671 150 TGHGLERYELHAGPSIPNY-DEGGGVKLEEGDVYAIEPFAT 189 (291)
T ss_pred cccCcCCCcccCCCccCcc-CCCCCceeCCCCEEEEcceEE
Confidence 9999996 89999988754 345678999999999999643
No 28
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=100.00 E-value=4.8e-35 Score=279.16 Aligned_cols=186 Identities=24% Similarity=0.309 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCC---Cc
Q 018911 145 PDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPD---SR 221 (349)
Q Consensus 145 ~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~---~r 221 (349)
-+||++||+|++|++++++.+.+.++||+|+.||++.++..+.++|+.++ ||..+ +.|+..+|+.|. ++
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~~a------Fp~~v--s~n~~~~H~~p~~~d~~ 73 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEPA------FPCNI--SINECAAHFTPKAGDKT 73 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCCC------CCcce--ecCCEeeCCCCCCCcCc
Confidence 47899999999999999999999999999999999999999999999864 88764 579999999985 67
Q ss_pred cCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceee
Q 018911 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVM 301 (349)
Q Consensus 222 ~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~ 301 (349)
.|++||+|+||+|+.++||++|++|||++|+ .++++++++.+|++++++.+|||++++||+++++++++++||..+.
T Consensus 74 ~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~---~~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i~ 150 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPIS 150 (295)
T ss_pred cCCCCCEEEEEEeEEECCEEEEEEEEEEeCc---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeeec
Confidence 8999999999999999999999999999995 3789999999999999999999999999999999999999999999
Q ss_pred cccccccc-ccCcCCCCcccccccCCCcccCCCcEEEEcCCc
Q 018911 302 HNVWFAIV-IHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYW 342 (349)
Q Consensus 302 ~~~GHGIG-~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~ 342 (349)
+++||||| +..|+.+.++.. ..+.+.+|++||||++||..
T Consensus 151 ~~~GHgig~~~~h~g~~ip~i-~~~~~~~le~GmV~aIEP~~ 191 (295)
T TIGR00501 151 NLTGHSMAPYRLHGGKSIPNV-KERDTTKLEEGDVVAIEPFA 191 (295)
T ss_pred CCCCcceecccccCCCccCee-cCCCCCEeCCCCEEEEceeE
Confidence 99999999 588888766544 34457899999999999954
No 29
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=1.3e-34 Score=275.71 Aligned_cols=183 Identities=26% Similarity=0.328 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCC---ccCC
Q 018911 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDS---RKLE 224 (349)
Q Consensus 148 Ie~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~---r~L~ 224 (349)
++.||+|++|++++++++.+.++||+||.||++.+++.+.++|+.++ ||. ++|.|+..+|+.|+. ++|+
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~a------fp~--~is~n~~~~H~~p~~~d~~~l~ 72 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPA------FPV--NLSINECAAHYTPNAGDDTVLK 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCCC------CCc--eeccCCEeeCCCCCCCCCcccC
Confidence 36899999999999999999999999999999999999999998764 774 468899999999964 8899
Q ss_pred CCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeeccc
Q 018911 225 DGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNV 304 (349)
Q Consensus 225 ~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~~~ 304 (349)
+||+|+||+|+.++||++|++|||++|+ +++++++++++|++++++.+|||++++||+++++++++++||..+.+++
T Consensus 73 ~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~G~~~~~~~~ 149 (291)
T cd01088 73 EGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLT 149 (291)
T ss_pred CCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCEEeecCC
Confidence 9999999999999999999999999985 7889999999999999999999999999999999999999999999999
Q ss_pred ccccc-ccCcCCCCcccccccCCCcccCCCcEEEEcCCc
Q 018911 305 WFAIV-IHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYW 342 (349)
Q Consensus 305 GHGIG-~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~ 342 (349)
||||| +.+|+.|.++.+ ..+.+.+|+|||||++||..
T Consensus 150 GHgig~~~~h~~~~ip~~-~~~~~~~le~gmV~aIEp~~ 187 (291)
T cd01088 150 GHSIERYRLHAGKSIPNV-KGGEGTRLEEGDVYAIEPFA 187 (291)
T ss_pred ccCccCccccCCCccCcc-CCCCCCEeCCCCEEEEceeE
Confidence 99999 589998877654 23457899999999999964
No 30
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00 E-value=2.1e-34 Score=267.64 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hccCC--CcHHHHHHHHHHHHHHcCCC-----CCCCCCccCCceeeecCCC-ccc
Q 018911 148 IERMRETCRIAREVLDAAAR-----MIRPG--VTTDEIDRVVHEATITAGGY-----PSPLNYHFFPKSCCTSVNE-VIC 214 (349)
Q Consensus 148 Ie~~R~Aa~ia~~al~~~~~-----~i~pG--~Te~Ei~~~v~~~~~~~G~~-----ps~l~y~~fp~~v~~g~n~-~~~ 214 (349)
++.||+|++++..+|...+. .|.+| +|+.+|+..++..+.+.+.. |..+ -..||+++++|.|. ..+
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~-~~~y~~iv~sG~~~~~l~ 79 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQL-DWCYPPIIQSGGNYDLLK 79 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHc-CcccCCeEeECcCcccCC
Confidence 46899999999999976666 89999 99999999999999987744 2222 24699999999999 899
Q ss_pred ccCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Q 018911 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (349)
Q Consensus 215 H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~ 294 (349)
|+.++++.++.|++|++|+|++|+||++|++|||++| ++++++++|++++++++++++++|||++++||++++++++++
T Consensus 80 h~~~s~~~~~~~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~ 158 (243)
T cd01091 80 SSSSSDKLLYHFGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKK 158 (243)
T ss_pred CCCCCccccCCCCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred cCCce---eeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCceee
Q 018911 295 SGFSV---VMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAV 345 (349)
Q Consensus 295 ~G~~~---v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~~ 345 (349)
.|... ..+.+|||||+++||.|.+. ..+++.+|++||||++++||.++
T Consensus 159 ~~~~~~~~~~~~~GHgiGle~hE~~~~l---~~~~~~~L~~GMvf~vepGi~~~ 209 (243)
T cd01091 159 KKPELEPNFTKNLGFGIGLEFRESSLII---NAKNDRKLKKGMVFNLSIGFSNL 209 (243)
T ss_pred hChhHHHhCcCCcccccCcccccCcccc---CCCCCCCcCCCCEEEEeCCcccc
Confidence 88544 34579999999999988654 23457899999999999999854
No 31
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=100.00 E-value=1.4e-33 Score=259.69 Aligned_cols=190 Identities=22% Similarity=0.318 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCC--CCC-CCC--CccCCceeeecCCCcccccCC----
Q 018911 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG--YPS-PLN--YHFFPKSCCTSVNEVICHGIP---- 218 (349)
Q Consensus 148 Ie~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~--~ps-~l~--y~~fp~~v~~g~n~~~~H~~p---- 218 (349)
+++||+|++|++++++.+.+.++||+||.||+..+++++.+... ++. ..+ ...||.+ ++.|+..+|+.|
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~--v~~n~~~~H~~p~~~~ 78 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTC--ISVNNCVCHFSPLKSD 78 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeE--eccCceeecCCCCCCC
Confidence 36899999999999999999999999999999888877777322 221 111 2346644 457999999996
Q ss_pred CCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCH-----HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 018911 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADE-----ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 293 (349)
Q Consensus 219 ~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~-----e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~ 293 (349)
++++|++||+|+||+|+.|+||++|++|||++|++++ +++++++++.++++++++++|||++++||+++++++++
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~ 158 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIV 158 (228)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999998875 89999999999999999999999999999999999999
Q ss_pred HcCCceeeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCcee
Q 018911 294 MSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRA 344 (349)
Q Consensus 294 ~~G~~~v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~ 344 (349)
++||.++..++||++|..+...|.-. ....+|++||||+++|+++.
T Consensus 159 ~~G~~~~~~~~~h~~g~~~~~~~~~~-----~~~~~l~~gmvf~~ep~~~~ 204 (228)
T cd01089 159 DYGCTPVEGVLSHQLKRVVSSGEGKA-----KLVECVKHGLLFPYPVLYEK 204 (228)
T ss_pred HcCCEEecCccccCcCceEecCCCCc-----cchhhccCCcccccceeEcc
Confidence 99999999999999988655444221 12678999999999999864
No 32
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.97 E-value=6e-30 Score=243.93 Aligned_cols=198 Identities=19% Similarity=0.235 Sum_probs=180.9
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCccccc
Q 018911 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG 216 (349)
Q Consensus 137 ~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~ 216 (349)
.++|.||||.|++.||+||.|+.+++-..+..-|++..|..|.+.++..++.+|+.-. .||+.|+.|.|....|+
T Consensus 223 ~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rGad~~-----AYpPVVAgG~na~tIHY 297 (488)
T KOG2414|consen 223 ERLRLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRGADRL-----AYPPVVAGGKNANTIHY 297 (488)
T ss_pred HHHHccCCHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhhHhhhhhhheeecCcccc-----ccCCeeecCcccceEEE
Confidence 4689999999999999999999999999999999999999999999999999999753 69999999999999999
Q ss_pred CCCCccCCCCCeEEEeeeceeCcEEeceeeeEEe-cCCCHHHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHH--
Q 018911 217 IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKP--GVRFREIGEVINRH-- 291 (349)
Q Consensus 217 ~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~e~~~l~~~~~ea~~~ai~~lkP--G~~~~eI~~~i~~~-- 291 (349)
.-++..|.++|.|++|.|+.++||.+|+||||.+ |+.++-|++||+++.+.++..|+.++| |.+.++|+....+.
T Consensus 298 ~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~ 377 (488)
T KOG2414|consen 298 VRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLG 377 (488)
T ss_pred eecccccCCCcEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999 99999999876554
Q ss_pred --HHHcCCc------------eeeccccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCceee
Q 018911 292 --ATMSGFS------------VVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAV 345 (349)
Q Consensus 292 --~~~~G~~------------~v~~~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~~ 345 (349)
+++.|.. .++|..||=+|+++|+.|.+. .+..|+|||||++|||..+.
T Consensus 378 ~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLGmDVHD~p~v~------r~~pL~pg~ViTIEPGvYIP 439 (488)
T KOG2414|consen 378 QELKELGIRKTDREEMIQAEKLCPHHVGHYLGMDVHDCPTVS------RDIPLQPGMVITIEPGVYIP 439 (488)
T ss_pred HHHHHhCcccchHHHHHhhhhcCCcccchhcCcccccCCCCC------CCccCCCCceEEecCceecC
Confidence 4445542 356789999999999999887 35789999999999997653
No 33
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=99.96 E-value=8.1e-29 Score=234.11 Aligned_cols=204 Identities=17% Similarity=0.273 Sum_probs=174.7
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccc
Q 018911 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215 (349)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H 215 (349)
..+.|.|||+.||+.||.|++|+++++.+++++++||+.|.++...+......+|+-.. .+|..++|+|.|..+.|
T Consensus 179 m~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcRh----~sYtcIc~sG~ns~vLH 254 (492)
T KOG2737|consen 179 LAECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCRH----LSYTCICASGDNSAVLH 254 (492)
T ss_pred HhhheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCccc----cccceeeecCCCcceee
Confidence 34689999999999999999999999999999999999999999999988888887443 35788999999999999
Q ss_pred c----CCCCccCCCCCeEEEeeeceeCcEEeceeeeEEe-cCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 018911 216 G----IPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINR 290 (349)
Q Consensus 216 ~----~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~v-G~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~ 290 (349)
+ .|+++.+++||.+++|+|+.|.+|.+|+|++|.+ |+.+++|+.+|++++.++.++++++|||+...|++....+
T Consensus 255 Ygha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a~KpGv~W~Dmh~La~k 334 (492)
T KOG2737|consen 255 YGHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGVWWVDMHKLAEK 334 (492)
T ss_pred ccccCCCCCcccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 8 8999999999999999999999999999999999 8999999999999999999999999999999999987766
Q ss_pred HHH----HcCC---------------ceeeccccccccccCcCC---C-Ccc-----cccccCCCcccCCCcEEEEcCCc
Q 018911 291 HAT----MSGF---------------SVVMHNVWFAIVIHCYST---E-DTK-----QCLVVSFSCFAKTGKIVLWSWYW 342 (349)
Q Consensus 291 ~~~----~~G~---------------~~v~~~~GHGIG~~~he~---P-~v~-----~~~~~~~~~~Le~Gmv~~le~g~ 342 (349)
++- +.|. -..+|..||=+|+.+|+- | .+. ....-...+.|++|||+++|||-
T Consensus 335 vlle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~lGlDvHDvGGyp~~~~rp~~P~l~~LR~aR~L~e~MviTvEPGc 414 (492)
T KOG2737|consen 335 VLLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFLGLDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGC 414 (492)
T ss_pred HHHHHHHhcCceeccHHHHHHhccCeeeccccccccccccccccCCCCCCCCCCCcchhhhhhhhhhhhcCcEEEecCCh
Confidence 543 3333 134678899999999963 2 111 11011236789999999999985
Q ss_pred e
Q 018911 343 R 343 (349)
Q Consensus 343 ~ 343 (349)
.
T Consensus 415 Y 415 (492)
T KOG2737|consen 415 Y 415 (492)
T ss_pred h
Confidence 3
No 34
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.87 E-value=1.1e-21 Score=198.49 Aligned_cols=214 Identities=15% Similarity=0.233 Sum_probs=177.4
Q ss_pred CCCCCcCCCCccccccccCCHHHHHHHHHHHHHHHHHHHH-----HHHhccCC--CcHHHHHHHHHHHHHHc----CCCC
Q 018911 125 DGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDA-----AARMIRPG--VTTDEIDRVVHEATITA----GGYP 193 (349)
Q Consensus 125 ~g~~~~e~~~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~-----~~~~i~pG--~Te~Ei~~~v~~~~~~~----G~~p 193 (349)
.++...++...+..+..+|++.||+.+|+|++++..+|.. +..++..| +|..-+...+..++.+. |..|
T Consensus 120 ~~fn~vDis~~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~ 199 (960)
T KOG1189|consen 120 GGFNKVDISLGLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDP 199 (960)
T ss_pred cCCceeehhhhhhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhccccCcccCc
Confidence 4555555656667789999999999999999999999973 33455555 56677777777776653 4444
Q ss_pred CCCCCccCCceeeecCCCc-ccccCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHH
Q 018911 194 SPLNYHFFPKSCCTSVNEV-ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI 272 (349)
Q Consensus 194 s~l~y~~fp~~v~~g~n~~-~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai 272 (349)
..+. ..||+++.+|.+.. -+....+++.| | +|+..+|++|++||+.++|||+|. |+.++++.|+..+.++++++
T Consensus 200 ~~~d-~cY~PIiqSGg~ydlk~sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT~Lid-pssemq~nY~fLl~aqe~il 274 (960)
T KOG1189|consen 200 DLLD-MCYPPIIQSGGKYDLKPSAVSDDNHL--H-VILCSLGIRYNSYCSNVSRTYLID-PSSEMQENYEFLLAAQEEIL 274 (960)
T ss_pred cccc-cccChhhhcCCccccccccccccccc--c-eEEeeccchhhhhhccccceeeec-chHHHHHHHHHHHHHHHHHH
Confidence 3343 34899999998854 45566778888 4 888999999999999999999995 79999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHHHcCCceeec---cccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCceeee
Q 018911 273 SIVKPGVRFREIGEVINRHATMSGFSVVMH---NVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVS 346 (349)
Q Consensus 273 ~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~---~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~~t 346 (349)
+.||||++.++|+.++.+++++.+...+.. ..|.|||++|.|...+.+ ..++.+|++||||+++.||.+|+
T Consensus 275 ~~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~k~lG~~iGlEFREssl~in---aKnd~~lk~gmvFni~lGf~nl~ 348 (960)
T KOG1189|consen 275 KLLRPGTKIGDVYEKALDYVEKNKPELVPNFTKNLGFGIGLEFRESSLVIN---AKNDRVLKKGMVFNISLGFSNLT 348 (960)
T ss_pred HhhcCCCchhHHHHHHHHHHHhcCcchhhhhhhhcccccceeeeccccccc---ccchhhhccCcEEEEeecccccc
Confidence 999999999999999999999999886554 479999999999999884 45679999999999999999987
No 35
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.79 E-value=1e-18 Score=174.58 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=170.5
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHH----hccCC--CcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeee-c
Q 018911 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAAR----MIRPG--VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT-S 208 (349)
Q Consensus 136 ~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~----~i~pG--~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~-g 208 (349)
...++++|++.|++.||.+----..|+-+.+. .+.-| +||.+++..++++=.+...+.. .+|+++.++ |
T Consensus 301 i~~~kAiKN~~E~~gmr~shirD~~Alve~~~wle~~~~~g~~itE~~~A~kle~fR~~~~~fmg----lSFeTIS~s~G 376 (606)
T KOG2413|consen 301 ISRAKAIKNDDELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFRSRQDHFMG----LSFETISSSVG 376 (606)
T ss_pred HHHHHHhcChHHhhhhhhcchhhHHHHHHHHHHHhhhhhcCcccchhhHHHHHHHHHHhhccccC----cCcceeeccCC
Confidence 35678999999999998876444444544444 34456 8999999999988777665532 359999866 9
Q ss_pred CCCcccccCCCC---ccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHH
Q 018911 209 VNEVICHGIPDS---RKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKP-GVRFREI 284 (349)
Q Consensus 209 ~n~~~~H~~p~~---r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkP-G~~~~eI 284 (349)
+|.++.|+.|.. +.+-+..+.++|-|+.|.-=.+|+|||+.+|+|+++.++.+..+....-+..+++-| |+....+
T Consensus 377 ~NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vFP~~t~g~~l 456 (606)
T KOG2413|consen 377 PNGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVFPKGTKGSVL 456 (606)
T ss_pred CCceeeecCCCccccceecCceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHHHhhhHhhhcccCCCCCcchh
Confidence 999999999964 589999999999999998889999999999999999999999999999988888877 8889999
Q ss_pred HHHHHHHHHHcCCceeeccccccccc--cCcCCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 285 GEVINRHATMSGFSVVMHNVWFAIVI--HCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 285 ~~~i~~~~~~~G~~~v~~~~GHGIG~--~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
+..++..+.+.|.. +.|-+|||||. -+||+|....+....+...|++||+++.|||+.
T Consensus 457 D~laR~~LW~~gLD-y~HgTGHGVG~fLnVhE~P~~is~r~~~~~~~l~ag~~~s~EPGYY 516 (606)
T KOG2413|consen 457 DALARSALWKAGLD-YGHGTGHGVGSFLNVHEGPIGIGYRPYSSNFPLQAGMVFSIEPGYY 516 (606)
T ss_pred HHHHHHHHHhhccc-cCCCCCcccccceEeccCCceeeeeecCCCchhcCceEeccCCccc
Confidence 99999999999996 68999999995 678999776654345677899999999999985
No 36
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=99.69 E-value=3.7e-16 Score=144.59 Aligned_cols=188 Identities=20% Similarity=0.171 Sum_probs=159.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH----HcCCCCCCCCCccCCceeeecCCCcccccCC
Q 018911 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218 (349)
Q Consensus 143 Ks~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~----~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p 218 (349)
...+...-+|+|+.+.+++-.++.+.|+||||..||+..++...+ +.|... ..+||+- .|-|.+..|++|
T Consensus 80 ~~~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~a----Gi~FPtG--~SlN~cAAHyTp 153 (397)
T KOG2775|consen 80 TESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNA----GIGFPTG--CSLNHCAAHYTP 153 (397)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhccccc----cccCCCc--ccccchhhhcCC
Confidence 345667889999999999999999999999999999999886554 333322 3579954 578999999999
Q ss_pred C---CccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHc
Q 018911 219 D---SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMS 295 (349)
Q Consensus 219 ~---~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~ 295 (349)
+ ..+|+.+|+..||+|...+|-..|.+.|+.+. +....|+.++++|...+|+...-.++..||+++|+++++++
T Consensus 154 NaGd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F~---p~~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~aiqEVmeSy 230 (397)
T KOG2775|consen 154 NAGDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAFN---PKYDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEVMESY 230 (397)
T ss_pred CCCCceeeeecceEEEeccccccCeEeeeeeEEeeC---ccccHHHHHHHHHHhhhhhhcCceeeehhhhHHHHHHhhhe
Confidence 6 46899999999999999999999999999984 57778999999999999999999999999999999999997
Q ss_pred CCc---------eeeccccccccc-cCcCCCCcccccccCCCcccCCCcEEEEcC
Q 018911 296 GFS---------VVMHNVWFAIVI-HCYSTEDTKQCLVVSFSCFAKTGKIVLWSW 340 (349)
Q Consensus 296 G~~---------~v~~~~GHGIG~-~~he~P~v~~~~~~~~~~~Le~Gmv~~le~ 340 (349)
-.. .++.+.||+|+. -+|..-.|+.. +++....|++|-++++|-
T Consensus 231 EvEi~Gk~~~VKpIrnLnGHSI~~yrIH~gksVPiV-kgge~trmee~e~yAIET 284 (397)
T KOG2775|consen 231 EVEINGKTYQVKPIRNLNGHSIAQYRIHGGKSVPIV-KGGEQTRMEEGEIYAIET 284 (397)
T ss_pred EEEeCCceecceeccccCCCcccceEeecCccccee-cCCcceeecCCeeEEEEe
Confidence 533 367899999994 67777666655 577889999999999873
No 37
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.67 E-value=5.6e-16 Score=154.70 Aligned_cols=212 Identities=14% Similarity=0.178 Sum_probs=160.2
Q ss_pred CcCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh----ccCC--CcHHHHHHHHHHHHH----------HcCCC
Q 018911 129 KVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARM----IRPG--VTTDEIDRVVHEATI----------TAGGY 192 (349)
Q Consensus 129 ~~e~~~~~~~~r~iKs~~EIe~~R~Aa~ia~~al~~~~~~----i~pG--~Te~Ei~~~v~~~~~----------~~G~~ 192 (349)
.+++...+..+-.+|+.+||+.+|.+++.....|...... +..+ +|...+...+...+- +.|-.
T Consensus 157 ~~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~ 236 (1001)
T COG5406 157 ASDVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDI 236 (1001)
T ss_pred hhhhhhhhhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcCcccccc
Confidence 3344455667889999999999999999999988844332 2222 333333333332111 11110
Q ss_pred -CCCCCCccCCceeeecCC-CcccccCCCCccCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHH
Q 018911 193 -PSPLNYHFFPKSCCTSVN-EVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEK 270 (349)
Q Consensus 193 -ps~l~y~~fp~~v~~g~n-~~~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ 270 (349)
-..|.| -|.+++.+|.. ...+.....++.| -||+|++.+|.+|+||++.++|||++. |+.++++.|+.++.++..
T Consensus 237 ~~d~lew-~ytpiiqsg~~~Dl~psa~s~~~~l-~gd~vl~s~GiRYn~YCSn~~RT~l~d-p~~e~~~Ny~fl~~lQk~ 313 (1001)
T COG5406 237 DLDQLEW-CYTPIIQSGGSIDLTPSAFSFPMEL-TGDVVLLSIGIRYNGYCSNMSRTILTD-PDSEQQKNYEFLYMLQKY 313 (1001)
T ss_pred chhhhhh-hcchhhccCceeecccccccCchhh-cCceEEEEeeeeeccccccccceEEeC-CchHhhhhHHHHHHHHHH
Confidence 011223 36667777764 3334445555666 488999999999999999999999995 799999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHHHcCCceeec---cccccccccCcCCCCcccccccCCCcccCCCcEEEEcCCceeee
Q 018911 271 AISIVKPGVRFREIGEVINRHATMSGFSVVMH---NVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLWSWYWRAVS 346 (349)
Q Consensus 271 ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~---~~GHGIG~~~he~P~v~~~~~~~~~~~Le~Gmv~~le~g~~~~t 346 (349)
.+..+|||....+|+..+.+++.+.|....+. ..|-+||++|.+...+.+. .+.++||.||+|+++.||.+|-
T Consensus 314 i~~~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~nv---kn~r~lq~g~~fnis~gf~nl~ 389 (1001)
T COG5406 314 ILGLVRPGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPFNV---KNGRVLQAGCIFNISLGFGNLI 389 (1001)
T ss_pred HHhhcCCCCCchhHHHHHHHHHHhcCCccCchHhhhhhhhccccccccccceec---cCCceeccccEEEEeecccccC
Confidence 99999999999999999999999999987665 4799999999998888753 4569999999999999998873
No 38
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.62 E-value=7.8e-15 Score=138.87 Aligned_cols=170 Identities=22% Similarity=0.311 Sum_probs=141.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcC--CCCC---CCCCccCCceeeecCCCcccc
Q 018911 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG--GYPS---PLNYHFFPKSCCTSVNEVICH 215 (349)
Q Consensus 141 ~iKs~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G--~~ps---~l~y~~fp~~v~~g~n~~~~H 215 (349)
.|-++.-+..+|.|+.|+..+|..+.+.++||.+..||+..-..++.++- .|-. .--...|| .|+++|..+||
T Consensus 14 tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfP--T~Isvnncv~h 91 (398)
T KOG2776|consen 14 TIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFP--TSISVNNCVCH 91 (398)
T ss_pred ccccHHHHhhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhcccccc--ceecccceeec
Confidence 56789999999999999999999999999999999999877666665431 1111 00123588 46789999999
Q ss_pred cCCC----CccCCCCCeEEEeeeceeCcEEeceeeeEEecC-----CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 018911 216 GIPD----SRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-----ADEASRQLVQCTYECLEKAISIVKPGVRFREIGE 286 (349)
Q Consensus 216 ~~p~----~r~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~-----~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~ 286 (349)
+.|- +..|++||+|.||+|+.++||.+-++.|++|+. ++....+++.++.-|.+++++.++||.+-.+|-+
T Consensus 92 ~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rllkpgn~n~~vT~ 171 (398)
T KOG2776|consen 92 FSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLLKPGNTNTQVTR 171 (398)
T ss_pred cCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHHhCCCCCCchhhH
Confidence 9883 567999999999999999999999999999985 4467889999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeccccccccccC
Q 018911 287 VINRHATMSGFSVVMHNVWFAIVIHC 312 (349)
Q Consensus 287 ~i~~~~~~~G~~~v~~~~GHGIG~~~ 312 (349)
+|.+.+.++++-.+-...-|-.=..+
T Consensus 172 ~i~k~aas~~c~pVegmlshql~~~~ 197 (398)
T KOG2776|consen 172 AIVKTAASYGCKPVEGMLSHQLKQHV 197 (398)
T ss_pred HHHHHHHHhCCcccccchhHHHHhhh
Confidence 99999999999866655555444333
No 39
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.37 E-value=2e-13 Score=140.43 Aligned_cols=48 Identities=35% Similarity=0.827 Sum_probs=42.8
Q ss_pred cccc-cCcccccccchhhhcCCCCCCccccChhhhhhchhHHHHHhhhh
Q 018911 14 SCVR-CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKA 61 (349)
Q Consensus 14 ~c~~-c~~~~~l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~ 61 (349)
+|+- =+|+|+||||+|+|+|||+..||||||+|||.+|++||.+|+.+
T Consensus 64 ~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~ 112 (606)
T PLN03144 64 VCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERA 112 (606)
T ss_pred eEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHHHHHHHHHh
Confidence 3544 48899999999999999877899999999999999999999764
No 40
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=97.87 E-value=5.9e-06 Score=54.15 Aligned_cols=36 Identities=39% Similarity=1.066 Sum_probs=30.1
Q ss_pred ccccCcccccccchhhhcCCCCCCccccChhhhhhchhHHHHH
Q 018911 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57 (349)
Q Consensus 15 c~~c~~~~~l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~ 57 (349)
|..|++++...|+.|. ..+|||.+|.+.+|..||..
T Consensus 1 C~~C~~~~~~~C~~C~-------~~~YCs~~Cq~~~w~~Hk~~ 36 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCK-------SVYYCSEECQRADWPYHKFE 36 (37)
T ss_dssp -TTTSSCSSEEETTTS-------SSEESSHHHHHHHHHHHCCT
T ss_pred CcCCCCCcCCcCCCCC-------CEEecCHHHHHHHHHHHhhh
Confidence 6678998878999996 46899999999999999853
No 41
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=97.51 E-value=0.0016 Score=57.47 Aligned_cols=102 Identities=25% Similarity=0.291 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCe
Q 018911 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (349)
Q Consensus 149 e~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDi 228 (349)
+.+|++.+.+.++++.+.+.++||++..||.+.+.+.+.+.|.........+ ..+.....+...-...++.+|++|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~~~~G--h~iG~~~~e~~~~~~~~~~~l~~gmv 179 (207)
T cd01066 102 DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTG--HGIGLEIHEPPVLKAGDDTVLEPGMV 179 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCCCCCc--cccCcccCCCCCcCCCCCCCcCCCCE
Confidence 5788899999999999999999999999999999999999986421111111 11211111111111124578999999
Q ss_pred EEEeeeceeC-cEEeceeeeEEecC
Q 018911 229 VNIDVTVYYK-GVHGDLNETYFVGN 252 (349)
Q Consensus 229 V~iD~g~~~~-GY~~D~~RT~~vG~ 252 (349)
+.|+.+.+.. ++..-+..|++|.+
T Consensus 180 ~~iep~~~~~~~~g~~~ed~v~vt~ 204 (207)
T cd01066 180 FAVEPGLYLPGGGGVRIEDTVLVTE 204 (207)
T ss_pred EEECCEEEECCCcEEEeeeEEEEeC
Confidence 9999999876 58889999999863
No 42
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=97.20 E-value=0.0057 Score=54.72 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCC-CCccCCCCC
Q 018911 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP-DSRKLEDGD 227 (349)
Q Consensus 149 e~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p-~~r~L~~GD 227 (349)
+.+|++.+.+.++++.+.+.++||++-.||.+.+++.+.+.|..+......++. +.....+. +...+ ++++|++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~~~~Gh~--iG~~~~e~-p~i~~~~~~~l~~gm 179 (208)
T cd01092 103 DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGHG--VGLEVHEA-PYISPGSDDVLEEGM 179 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCCCCCccc--cCcccCcC-CCcCCCCCCCcCCCC
Confidence 466788889999999999999999999999999999999998643211111111 11111111 11112 467899999
Q ss_pred eEEEeeeceeCcE-EeceeeeEEec
Q 018911 228 IVNIDVTVYYKGV-HGDLNETYFVG 251 (349)
Q Consensus 228 iV~iD~g~~~~GY-~~D~~RT~~vG 251 (349)
++.|+.+.+..|+ ..-+..|++|.
T Consensus 180 v~~iep~~~~~~~~g~~~ed~v~vt 204 (208)
T cd01092 180 VFTIEPGIYIPGKGGVRIEDDVLVT 204 (208)
T ss_pred EEEECCeEEecCCCEEEeeeEEEEC
Confidence 9999998876443 44467788874
No 43
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.15 E-value=0.00014 Score=68.20 Aligned_cols=40 Identities=38% Similarity=0.917 Sum_probs=34.3
Q ss_pred ccccccCcccc-cccchhhhcCCCCCCccccChhhhhhchhHHHHHhh
Q 018911 13 LSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (349)
Q Consensus 13 ~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 59 (349)
..|+.||.+.. .+|..|+.. -+|||+|.|-+|-.||++.+
T Consensus 320 ~fCstCG~~ga~KrCs~CKav-------~YCdqeCQk~hWf~HKK~C~ 360 (396)
T KOG1710|consen 320 QFCSTCGHPGAKKRCSQCKAV-------AYCDQECQKFHWFIHKKVCS 360 (396)
T ss_pred ccccccCCCCccchhhhhHHH-------HHHHHHHHHhhhHHHHHHHH
Confidence 35888998766 999999853 37999999999999999886
No 44
>PLN03158 methionine aminopeptidase; Provisional
Probab=97.10 E-value=0.0034 Score=62.55 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=69.6
Q ss_pred cEEeceeeeEEecCCC--HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCce-eeccccc--cccccCc
Q 018911 239 GVHGDLNETYFVGNAD--EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-VMHNVWF--AIVIHCY 313 (349)
Q Consensus 239 GY~~D~~RT~~vG~~~--~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~-v~~~~GH--GIG~~~h 313 (349)
..+.++.++..|..+. +.++++.+.+.++++++++++|||++-.||.+++++.+.++|... ...+.+. ++.....
T Consensus 126 ~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N 205 (396)
T PLN03158 126 EPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVN 205 (396)
T ss_pred ccccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeeccc
Confidence 3456777888887655 567899999999999999999999999999999999988776321 1112111 1111111
Q ss_pred CCCCcccccccCCCcccCCCcEEEEcCCce
Q 018911 314 STEDTKQCLVVSFSCFAKTGKIVLWSWYWR 343 (349)
Q Consensus 314 e~P~v~~~~~~~~~~~Le~Gmv~~le~g~~ 343 (349)
..+.|. ..++.+|++|+++.++.+-.
T Consensus 206 --~~i~Hg--ip~~r~L~~GDiV~iDvg~~ 231 (396)
T PLN03158 206 --EVICHG--IPDARKLEDGDIVNVDVTVY 231 (396)
T ss_pred --ccccCC--CCCCccCCCCCEEEEEEeEE
Confidence 122222 12467899999999987754
No 45
>PRK05716 methionine aminopeptidase; Validated
Probab=97.04 E-value=0.0074 Score=55.99 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCc--cccc-C-CCCccCCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG-I-PDSRKLED 225 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~--~~H~-~-p~~r~L~~ 225 (349)
..|++..++.++++.+.+.++||++-.||.+.+++.+.+.|..+. .++.++. +.....+. +.++ . .++.+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~~~-~~~~GHg--iG~~~~e~p~~~~~~~~~~~~~le~ 195 (252)
T PRK05716 119 EDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVV-REYCGHG--IGRKFHEEPQIPHYGAPGDGPVLKE 195 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCccccc--cCCccCCCCccCcCCCCCCCCEecC
Confidence 456677788899999999999999999999999999999887542 2222222 22121111 1111 1 24678999
Q ss_pred CCeEEEeeecee------------------CcEEeceeeeEEecC
Q 018911 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (349)
Q Consensus 226 GDiV~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (349)
|.++.|+.+.+. +++..-+..|++|.+
T Consensus 196 Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~ 240 (252)
T PRK05716 196 GMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTE 240 (252)
T ss_pred CCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcC
Confidence 999999988764 346667788888864
No 46
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=96.95 E-value=0.011 Score=54.67 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCc--ccccC--CCCccCCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHGI--PDSRKLED 225 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~--~~H~~--p~~r~L~~ 225 (349)
..|++..++.++++.+++.++||++-.||...+.+.+.+.|..+. ..+.++. +.....+. ++.+. .++.+|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~-~~~~GHg--iG~~~~e~p~i~~~~~~~~~~~l~~ 193 (247)
T TIGR00500 117 EAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV-REYCGHG--IGRKFHEEPQIPNYGKKFTNVRLKE 193 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCccCCc--cCcccCCCCccCCcCcCCCCCEecC
Confidence 456777788899999999999999999999999999999886542 1222221 22222221 12111 23678999
Q ss_pred CCeEEEeeecee------------------CcEEeceeeeEEecC
Q 018911 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (349)
Q Consensus 226 GDiV~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (349)
|.++.|+.+.+. +++..-+..|++|.+
T Consensus 194 gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~ 238 (247)
T TIGR00500 194 GMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITD 238 (247)
T ss_pred CCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcC
Confidence 999999988765 245666788888853
No 47
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.91 E-value=0.014 Score=53.65 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCc--cc-ccCC-CCccCCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--IC-HGIP-DSRKLED 225 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~--~~-H~~p-~~r~L~~ 225 (349)
.+|++..++.++++.+.+.++||++-.||.+.+++.+.+.|.... ..+.++. +.....+. +. +..+ ++.+|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~-~~~~GHg--iG~~~~e~p~~~~~~~~~~~~~le~ 185 (238)
T cd01086 109 EAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVV-REFGGHG--IGRKFHEEPQIPNYGRPGTGPKLKP 185 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCccee-cCccccC--CCCccccCCCcCCccCCCCCCEecC
Confidence 456788888999999999999999999999999999999987542 2222222 11111111 11 2223 3678999
Q ss_pred CCeEEEeeecee------------------CcEEeceeeeEEecC
Q 018911 226 GDIVNIDVTVYY------------------KGVHGDLNETYFVGN 252 (349)
Q Consensus 226 GDiV~iD~g~~~------------------~GY~~D~~RT~~vG~ 252 (349)
|.++.++.+.++ +.+..-+..|++|.+
T Consensus 186 Gmv~~iep~i~~~~~~~~~~~~~~~~~~~~g~~g~~~edtv~Vte 230 (238)
T cd01086 186 GMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITE 230 (238)
T ss_pred CCEEEEeeEEECCCCceEECCCCCEEEcCCCCEEEeeeeEEEEcC
Confidence 999999988874 234555677888853
No 48
>PRK15173 peptidase; Provisional
Probab=96.86 E-value=0.013 Score=56.81 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCe
Q 018911 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDI 228 (349)
Q Consensus 149 e~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDi 228 (349)
+..|++.+++.++++.+.+.++||++-.||...+.+.+.+.|.........+.......|.++.-.....++.+|++|.+
T Consensus 202 ~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~E~P~i~~~~~~~Le~GMV 281 (323)
T PRK15173 202 EITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHATESFTSGMV 281 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCCcCCCCCCcCCCCCCCCCCCCccCCCCE
Confidence 34577888899999999999999999999999999999998853221111111111111223221111124578999999
Q ss_pred EEEeeeceeCc-EEeceeeeEEec
Q 018911 229 VNIDVTVYYKG-VHGDLNETYFVG 251 (349)
Q Consensus 229 V~iD~g~~~~G-Y~~D~~RT~~vG 251 (349)
+.|+.+.+..| +-.-+..|++|.
T Consensus 282 ~tiEPgiy~~g~ggvriEDtvlVT 305 (323)
T PRK15173 282 LSLETPYYGYNLGSIMIEDMILIN 305 (323)
T ss_pred EEECCEEEcCCCcEEEEeeEEEEc
Confidence 99999887433 335678999985
No 49
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=96.77 E-value=0.02 Score=52.67 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCccccc------CCCCccC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHG------IPDSRKL 223 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~------~p~~r~L 223 (349)
..|++..++.++++.+.+.++||++-.||++.+.+.+.++|...... +.+...+....++. +|. .-++++|
T Consensus 110 ~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~--~~~GHgiGl~~he~-~~~~g~~~~~~~~~~L 186 (228)
T cd01090 110 AHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRT--FGYGHSFGVLSHYY-GREAGLELREDIDTVL 186 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccc--cccCcccccccccC-CCccccccCCCCCCcc
Confidence 46778888999999999999999999999999999999988543211 11111222222221 111 1135889
Q ss_pred CCCCeEEEeeeceeC----c-EEeceeeeEEecC
Q 018911 224 EDGDIVNIDVTVYYK----G-VHGDLNETYFVGN 252 (349)
Q Consensus 224 ~~GDiV~iD~g~~~~----G-Y~~D~~RT~~vG~ 252 (349)
++|.++.|+.+.++. | .-.-+..|++|.+
T Consensus 187 e~GMV~~iEP~i~~~~~~~g~gG~ried~v~Vt~ 220 (228)
T cd01090 187 EPGMVVSMEPMIMLPEGQPGAGGYREHDILVINE 220 (228)
T ss_pred CCCCEEEECCEEeecccCCCCcEEEeeeEEEECC
Confidence 999999999998862 2 2334788888853
No 50
>PRK09795 aminopeptidase; Provisional
Probab=96.76 E-value=0.021 Score=56.14 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCC-CCcc
Q 018911 144 TPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP-DSRK 222 (349)
Q Consensus 144 s~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p-~~r~ 222 (349)
.+++-+.+|++-+++.++.+.+.+.++||++-.||++.+.+.+.+.|.........+. .+.....+. +...| ++.+
T Consensus 235 ~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~g~~~~~~h~~GH--giGl~~he~-p~i~~~~~~~ 311 (361)
T PRK09795 235 VSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGH--AIGIEVHED-PRFSPRDTTT 311 (361)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCccCCCCCCc--cCCccccCC-CCcCCCCCCC
Confidence 3555567888999999999999999999999999999999999998754321111111 121121121 11112 3678
Q ss_pred CCCCCeEEEeeeceeCcE-EeceeeeEEec
Q 018911 223 LEDGDIVNIDVTVYYKGV-HGDLNETYFVG 251 (349)
Q Consensus 223 L~~GDiV~iD~g~~~~GY-~~D~~RT~~vG 251 (349)
|++|.++.|+.+.+..|. -.-+.-|++|.
T Consensus 312 l~~gmv~~iEpgiy~~~~~gvriEd~v~vt 341 (361)
T PRK09795 312 LQPGMLLTVEPGIYLPGQGGVRIEDVVLVT 341 (361)
T ss_pred cCCCCEEEECCEEEeCCCCEEEEeeEEEEC
Confidence 999999999999987553 35578888884
No 51
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.73 E-value=0.008 Score=57.48 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeeccccccccccCcCCCCccccc-ccCCCcccCCC
Q 018911 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCL-VVSFSCFAKTG 333 (349)
Q Consensus 255 ~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~~~GHGIG~~~he~P~v~~~~-~~~~~~~Le~G 333 (349)
+.++++.+.+.++++++++.++||++..||.+.+++.+.+.|-. .++.++....+ .+.|+. ..+++.+|++|
T Consensus 2 ~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~-----~afp~~is~n~--~~~H~~p~~~d~~~l~~G 74 (291)
T cd01088 2 EKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAG-----PAFPVNLSINE--CAAHYTPNAGDDTVLKEG 74 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCC-----CCCCceeccCC--EeeCCCCCCCCCcccCCC
Confidence 46788999999999999999999999999999999999999843 22223332222 222332 22346789999
Q ss_pred cEEEEcCCce
Q 018911 334 KIVLWSWYWR 343 (349)
Q Consensus 334 mv~~le~g~~ 343 (349)
+++.++.|..
T Consensus 75 DvV~iD~G~~ 84 (291)
T cd01088 75 DVVKLDFGAH 84 (291)
T ss_pred CEEEEEEEEE
Confidence 9999988753
No 52
>PRK14575 putative peptidase; Provisional
Probab=96.72 E-value=0.018 Score=57.73 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceee--ecCCCcccccCCCCccCCCCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~--~g~n~~~~H~~p~~r~L~~GD 227 (349)
..|++.+++.++++.+++.++||++-.||++.+.+.+.+.|........ +...+. .|..+.-.-..-++.+|++|.
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHGiG~~lg~~e~P~i~~~~~~~Le~GM 363 (406)
T PRK14575 286 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGH--LGHGNGVFLGLEESPFVSTHATESFTSGM 363 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCcccCCCCCccCCCCCCCCCCCcCCCC
Confidence 4567778889999999999999999999999999999988753221111 111122 122221100112457899999
Q ss_pred eEEEeeeceeCc-EEeceeeeEEecC
Q 018911 228 IVNIDVTVYYKG-VHGDLNETYFVGN 252 (349)
Q Consensus 228 iV~iD~g~~~~G-Y~~D~~RT~~vG~ 252 (349)
++.|+.+.+..| +-.-+..|++|.+
T Consensus 364 v~tiEpgiy~~g~gGvriEDtvlVT~ 389 (406)
T PRK14575 364 VLSLETPYYGYNLGSIMIEDMILINK 389 (406)
T ss_pred EEEECCeeecCCCcEEEEEeEEEEcC
Confidence 999999987544 3457889999953
No 53
>PRK12897 methionine aminopeptidase; Reviewed
Probab=96.71 E-value=0.016 Score=53.94 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCc--ccccC-C-CCccCCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHGI-P-DSRKLED 225 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~--~~H~~-p-~~r~L~~ 225 (349)
..|++.+++.++++.+++.++||++..||+..+.+.+.+.|.... .++.++. +..+..+. +.+.. + +..+|++
T Consensus 118 ~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~~-~~~~GHg--iGl~~hE~P~i~~~~~~~~~~~l~~ 194 (248)
T PRK12897 118 EAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVA-RDFTGHG--IGKEIHEEPAIFHFGKQGQGPELQE 194 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCccC-CCeEECc--cCCcccCCCccCCCCCCCCCCCcCC
Confidence 456666788999999999999999999999999999999886432 2222221 22222221 12211 1 3468999
Q ss_pred CCeEEEeeece-----------------eCc-EEeceeeeEEecC
Q 018911 226 GDIVNIDVTVY-----------------YKG-VHGDLNETYFVGN 252 (349)
Q Consensus 226 GDiV~iD~g~~-----------------~~G-Y~~D~~RT~~vG~ 252 (349)
|.++.|..+.+ .+| +..-+..|++|.+
T Consensus 195 Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~ 239 (248)
T PRK12897 195 GMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITK 239 (248)
T ss_pred CCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeC
Confidence 99999999887 244 6778888888853
No 54
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=96.59 E-value=0.022 Score=53.09 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCce----eeecCCCcccccCC-CCccC
Q 018911 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS----CCTSVNEVICHGIP-DSRKL 223 (349)
Q Consensus 149 e~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~----v~~g~n~~~~H~~p-~~r~L 223 (349)
+..|++.+++.++.+++.+.++||++-.||...+.+.+.+.+..-. . .|+.. +.....+.-....+ ++++|
T Consensus 119 ~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~--~--~~~~~~GHgiGle~hE~~~~l~~~~~~~L 194 (243)
T cd01091 119 SEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELE--P--NFTKNLGFGIGLEFRESSLIINAKNDRKL 194 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHH--H--hCcCCcccccCcccccCccccCCCCCCCc
Confidence 4567788889999999999999999999999999999888752111 0 12222 22222221111112 35789
Q ss_pred CCCCeEEEeeece-e----------CcEEeceeeeEEecC
Q 018911 224 EDGDIVNIDVTVY-Y----------KGVHGDLNETYFVGN 252 (349)
Q Consensus 224 ~~GDiV~iD~g~~-~----------~GY~~D~~RT~~vG~ 252 (349)
++|.++.|..|.+ + +.|-.-++.|++|.+
T Consensus 195 ~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 195 KKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTE 234 (243)
T ss_pred CCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcC
Confidence 9999999999987 3 257888999999964
No 55
>PRK14576 putative endopeptidase; Provisional
Probab=96.57 E-value=0.028 Score=56.21 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceee--ecCCCcccccCC-CCccCCC
Q 018911 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEVICHGIP-DSRKLED 225 (349)
Q Consensus 149 e~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~--~g~n~~~~H~~p-~~r~L~~ 225 (349)
+..|++.+++.+++++++++++||++-.||+..+.+.+.+.|.........++ .+. .|..+. +...+ ++.+|++
T Consensus 284 ~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G~~~~~~~~~GH--giG~~l~~~e~-P~i~~~~~~~Le~ 360 (405)
T PRK14576 284 KLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLGH--GDGVFLGLEEV-PFVSTQATETFCP 360 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCC--CCCCCCCcCcC-CCcCCCCCCccCC
Confidence 35667788889999999999999999999999999999998863221111111 222 232322 22222 4678999
Q ss_pred CCeEEEeeeceeCc-EEeceeeeEEec
Q 018911 226 GDIVNIDVTVYYKG-VHGDLNETYFVG 251 (349)
Q Consensus 226 GDiV~iD~g~~~~G-Y~~D~~RT~~vG 251 (349)
|.++.++.+.+..| .-.-+..|++|.
T Consensus 361 GMv~~vEp~~y~~g~ggvriEDtvlVT 387 (405)
T PRK14576 361 GMVLSLETPYYGIGVGSIMLEDMILIT 387 (405)
T ss_pred CCEEEECCceeecCCCEEEEeeEEEEC
Confidence 99999998776544 334478899985
No 56
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=96.56 E-value=0.02 Score=56.93 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCC----cccccCC-CCccCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE----VICHGIP-DSRKLE 224 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~----~~~H~~p-~~r~L~ 224 (349)
.+|++.+++.+++++++++++||+|-.||++.+.+.+.+.|... ....+++ +..+... ..+.-.+ ++.+|+
T Consensus 271 ~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G~~~--~h~~Ghg--iGl~~~~~~~e~~~~l~~~~~~~L~ 346 (391)
T TIGR02993 271 AFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLKKYGIHK--DSRTGYP--IGLSYPPDWGERTMSLRPGDNTVLK 346 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCcc--CCCceee--eccCcCCCCCCccccccCCCCceec
Confidence 46678889999999999999999999999999999999988643 1122232 1111110 0011112 357899
Q ss_pred CCCeEEEeeeceeCcEEeceeeeEEecC
Q 018911 225 DGDIVNIDVTVYYKGVHGDLNETYFVGN 252 (349)
Q Consensus 225 ~GDiV~iD~g~~~~GY~~D~~RT~~vG~ 252 (349)
+|.++.|+.+.+..|+..-+..|++|.+
T Consensus 347 ~GMv~tvEpgiy~~~~Gvried~v~VT~ 374 (391)
T TIGR02993 347 PGMTFHFMTGLWMEDWGLEITESILITE 374 (391)
T ss_pred CCCEEEEcceeEeCCCCeEEeeEEEECC
Confidence 9999999999998877677889999853
No 57
>PRK12318 methionine aminopeptidase; Provisional
Probab=96.49 E-value=0.032 Score=53.39 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCc--ccccCC-CCccCCCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHGIP-DSRKLEDG 226 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~--~~H~~p-~~r~L~~G 226 (349)
.+|++..++.++++.+++.++||++-.||...+.+.+.+.|.... ..+.++. +.....+. +.+..+ ++.+|++|
T Consensus 159 ~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~~~~-~~~~GHg--IGl~~hE~P~i~~~~~~~~~~L~~G 235 (291)
T PRK12318 159 IKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVV-DQFVGHG--VGIKFHENPYVPHHRNSSKIPLAPG 235 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccC-CCcccCC--cCccccCCCcccCcCCCCCCEeCCC
Confidence 457788889999999999999999999999999999999886431 1122221 22222221 122222 24679999
Q ss_pred CeEEEeeeceeC
Q 018911 227 DIVNIDVTVYYK 238 (349)
Q Consensus 227 DiV~iD~g~~~~ 238 (349)
.++.|+.+.+..
T Consensus 236 MV~~iEP~i~~~ 247 (291)
T PRK12318 236 MIFTIEPMINVG 247 (291)
T ss_pred CEEEECCEEEcC
Confidence 999999887754
No 58
>PRK12896 methionine aminopeptidase; Reviewed
Probab=96.48 E-value=0.038 Score=51.29 Aligned_cols=100 Identities=21% Similarity=0.272 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCC---ccccc-CC-CCccCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE---VICHG-IP-DSRKLE 224 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~---~~~H~-~p-~~r~L~ 224 (349)
..+++...+.++++.+.+.++||++-.||...+.+.+.+.|.... .++.++. +.....+ .+.++ .+ ++.+|+
T Consensus 124 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~~~~-~~~~GHg--iG~~~he~p~~~~~~~~~~~~~~le 200 (255)
T PRK12896 124 EAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVV-RDLTGHG--VGRSLHEEPSVILTYTDPLPNRLLR 200 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec-cCcccCC--cCcccccCCCccccCCCCCCCCEec
Confidence 356677778889999999999999999999999999999886431 2222222 1111111 11111 12 357899
Q ss_pred CCCeEEEeeece------------------eCcEEeceeeeEEecC
Q 018911 225 DGDIVNIDVTVY------------------YKGVHGDLNETYFVGN 252 (349)
Q Consensus 225 ~GDiV~iD~g~~------------------~~GY~~D~~RT~~vG~ 252 (349)
+|.++.|+.+.+ .+++..-+..|++|.+
T Consensus 201 ~GmV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt~ 246 (255)
T PRK12896 201 PGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTR 246 (255)
T ss_pred CCcEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEcC
Confidence 999999998775 2455666889999864
No 59
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=96.45 E-value=0.033 Score=51.44 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcC----CCC------------CCCCCccCCceeeecCCCcc
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG----GYP------------SPLNYHFFPKSCCTSVNEVI 213 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G----~~p------------s~l~y~~fp~~v~~g~n~~~ 213 (349)
..+++..++.++++.+++.++||++-.||.+.+.+.+.+.+ ..+ ..+..+.+...+.....+.
T Consensus 104 ~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e~- 182 (243)
T cd01087 104 EQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDV- 182 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCcccccC-
Confidence 45677788899999999999999999999999988887653 211 0110011111122222221
Q ss_pred ccc--CC-CCccCCCCCeEEEeeeceeCc-----------EEeceeeeEEecC
Q 018911 214 CHG--IP-DSRKLEDGDIVNIDVTVYYKG-----------VHGDLNETYFVGN 252 (349)
Q Consensus 214 ~H~--~p-~~r~L~~GDiV~iD~g~~~~G-----------Y~~D~~RT~~vG~ 252 (349)
+.. .+ ++.+|++|.++.|..+.+..| +-.-+..|++|.+
T Consensus 183 p~~~~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~ 235 (243)
T cd01087 183 GGYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTE 235 (243)
T ss_pred ccccccCCCCCCCCCCCEEEECCEEEeCCcccccccccceeEEEeeeEEEEcC
Confidence 111 22 457899999999999998654 6777888998853
No 60
>PRK08671 methionine aminopeptidase; Provisional
Probab=96.45 E-value=0.054 Score=51.76 Aligned_cols=97 Identities=26% Similarity=0.267 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCC-----Cccccc-CCCCccC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVN-----EVICHG-IPDSRKL 223 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n-----~~~~H~-~p~~r~L 223 (349)
..+++.+.+.++++.+.+.++||++-.||.+.+++.+.+.|..+. .+..+.. .|.+ -.++.. ..++.+|
T Consensus 102 ~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~-~~~~GHg----iG~~~~he~p~ip~~~~~~~~~l 176 (291)
T PRK08671 102 KYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPI-RNLTGHG----LERYELHAGPSIPNYDEGGGVKL 176 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-CCCcccC----cCCCcccCCCccCccCCCCCcee
Confidence 456778888999999999999999999999999999999987663 2222211 1211 011111 1236789
Q ss_pred CCCCeEEEeeece-eCcEEeceeeeEEec
Q 018911 224 EDGDIVNIDVTVY-YKGVHGDLNETYFVG 251 (349)
Q Consensus 224 ~~GDiV~iD~g~~-~~GY~~D~~RT~~vG 251 (349)
++|+++.|+.... -.|+..|..+|-...
T Consensus 177 e~GmV~aIEp~~t~G~G~v~~~~~~~iy~ 205 (291)
T PRK08671 177 EEGDVYAIEPFATDGEGKVVEGPEVEIYS 205 (291)
T ss_pred CCCCEEEEcceEECCCCeEecCCceEEEe
Confidence 9999999998765 378888888877664
No 61
>PRK07281 methionine aminopeptidase; Reviewed
Probab=96.36 E-value=0.037 Score=52.84 Aligned_cols=99 Identities=10% Similarity=0.150 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCc--cccc-CC-CCccCCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEV--ICHG-IP-DSRKLED 225 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~--~~H~-~p-~~r~L~~ 225 (349)
..|++.+++.++++.+++.++||++-.||+..+.+.+.++|... ..++.++. +.....+. +++. .+ .+.+|++
T Consensus 149 ~~~~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~-~~~~~GHG--IGl~~hE~P~i~~~~~~~~~~~Le~ 225 (286)
T PRK07281 149 EVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGV-VRDLVGHG--VGPTMHEEPMVPNYGTAGRGLRLRE 225 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-CCCeeeee--CCCccCCCCcCCCcccCCCCCEECC
Confidence 46788899999999999999999999999999999998877542 11222221 21121221 1221 12 3467999
Q ss_pred CCeEEEeeeceeC-------------------cEEeceeeeEEec
Q 018911 226 GDIVNIDVTVYYK-------------------GVHGDLNETYFVG 251 (349)
Q Consensus 226 GDiV~iD~g~~~~-------------------GY~~D~~RT~~vG 251 (349)
|.++.|..+.+.. +...-+..|++|.
T Consensus 226 GMV~tiEPgiy~~~~~~~~~~~~gw~~~~~~g~~gvr~EdtvlVT 270 (286)
T PRK07281 226 GMVLTIEPMINTGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVIT 270 (286)
T ss_pred CCEEEECCeeEcCCcceecccCCCceEEecCCCcEEEeccEEEEe
Confidence 9999999998752 2335677888874
No 62
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=96.14 E-value=0.033 Score=49.89 Aligned_cols=98 Identities=28% Similarity=0.303 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCC-CCCCCCccCCceeeecCCCcccccC--CCCccCCCCC
Q 018911 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCCTSVNEVICHGI--PDSRKLEDGD 227 (349)
Q Consensus 151 ~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~-ps~l~y~~fp~~v~~g~n~~~~H~~--p~~r~L~~GD 227 (349)
.|++.+.+.++++.+++.++||+|-.||.+.+.+.+.+.|.. +.+. .+..++.....+..+.-. -++.+|++|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~~---~~GH~iG~~~~~~~P~i~~~~~~~~l~~gm 180 (207)
T PF00557_consen 104 QRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYPH---GLGHGIGLEFHEPGPNIARPGDDTVLEPGM 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBTS---SSEEEESSSSSEEEEEESSTTTSSB--TTB
T ss_pred ccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceeee---cccccccccccccceeeecccccceecCCC
Confidence 788888889999999999999999999999999999999862 2111 111122211111112211 2567899999
Q ss_pred eEEEeeece-eCcE-EeceeeeEEec
Q 018911 228 IVNIDVTVY-YKGV-HGDLNETYFVG 251 (349)
Q Consensus 228 iV~iD~g~~-~~GY-~~D~~RT~~vG 251 (349)
++.|+.+.. ..|. ..-+..|++|.
T Consensus 181 v~~iep~~~~~~~~~g~~~ed~v~Vt 206 (207)
T PF00557_consen 181 VFAIEPGLYFIPGWGGVRFEDTVLVT 206 (207)
T ss_dssp EEEEEEEEEEETTSEEEEEBEEEEEE
T ss_pred ceeEeeeEEccCCCcEEEEEEEEEEC
Confidence 999999876 3343 66666777663
No 63
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=96.13 E-value=0.052 Score=49.84 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCC-CCCccCCceeeecCCCcccccCCCCccCCCCC
Q 018911 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHFFPKSCCTSVNEVICHGIPDSRKLEDGD 227 (349)
Q Consensus 149 e~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~-l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GD 227 (349)
...+++.+.+.++++++++.++||++-.||+..+.+.+.+.|..+.. +..+.+...+.++.+.. .-...|++|.
T Consensus 120 ~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~~~~~~~-----~~~~~l~~gm 194 (228)
T cd01089 120 GKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEGKA-----KLVECVKHGL 194 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCEEecCccccCcCceEecCCCCc-----cchhhccCCc
Confidence 46778888899999999999999999999999999999999953211 00011111223322211 0146799999
Q ss_pred eEEEeeeceeCc-EEeceeeeEEecC
Q 018911 228 IVNIDVTVYYKG-VHGDLNETYFVGN 252 (349)
Q Consensus 228 iV~iD~g~~~~G-Y~~D~~RT~~vG~ 252 (349)
++.+....+..| +..-+..|++|.+
T Consensus 195 vf~~ep~~~~~g~~~~~~~~Tv~vt~ 220 (228)
T cd01089 195 LFPYPVLYEKEGEVVAQFKLTVLLTP 220 (228)
T ss_pred ccccceeEccCCCeEEEEEEEEEEcC
Confidence 999999998755 8889999999964
No 64
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.025 Score=52.95 Aligned_cols=84 Identities=23% Similarity=0.184 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCce-eecccc--ccccccCcCCCCcccccccCCCcccC
Q 018911 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-VMHNVW--FAIVIHCYSTEDTKQCLVVSFSCFAK 331 (349)
Q Consensus 255 ~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~-v~~~~G--HGIG~~~he~P~v~~~~~~~~~~~Le 331 (349)
+.++++-+.+.++++.+.+.++||++..||.+.++++++++|.-. ...+-| -.+.+.+. ..+.|+..+ .+.+|+
T Consensus 12 ek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvN--e~v~HgiP~-d~~vlk 88 (255)
T COG0024 12 EKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVN--EVVAHGIPG-DKKVLK 88 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehh--heeeecCCC-CCcccC
Confidence 346778888899999999999999999999999999999865421 111222 12222221 222222111 578999
Q ss_pred CCcEEEEcCC
Q 018911 332 TGKIVLWSWY 341 (349)
Q Consensus 332 ~Gmv~~le~g 341 (349)
+|.++.++.|
T Consensus 89 ~GDiv~IDvg 98 (255)
T COG0024 89 EGDIVKIDVG 98 (255)
T ss_pred CCCEEEEEEE
Confidence 9999988754
No 65
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=95.65 E-value=0.096 Score=52.24 Aligned_cols=101 Identities=19% Similarity=0.327 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCC-CCCccCCceeeecCCCcccccCC------CCcc
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP-LNYHFFPKSCCTSVNEVICHGIP------DSRK 222 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~-l~y~~fp~~v~~g~n~~~~H~~p------~~r~ 222 (349)
..+++...+.++++.+++.++||++-.||..++++.+.+.|..+.. +..+++...+--|...++++..+ ++..
T Consensus 139 ~~~~l~~aa~~A~~aai~~vkPG~~~~dI~~ai~~v~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~ 218 (389)
T TIGR00495 139 RKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAE 218 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCE
Confidence 4566777788999999999999999999999999999999986641 11222222222222223344332 2357
Q ss_pred CCCCCeEEEeeecee-CcEEecee-eeEEe
Q 018911 223 LEDGDIVNIDVTVYY-KGVHGDLN-ETYFV 250 (349)
Q Consensus 223 L~~GDiV~iD~g~~~-~GY~~D~~-RT~~v 250 (349)
|++|+++.||+.+.. .|+.-+.. ||-++
T Consensus 219 le~gev~aIEp~vs~G~g~v~~~~~~~tiy 248 (389)
T TIGR00495 219 FEENEVYAVDILVSTGEGKAKDADQRTTIY 248 (389)
T ss_pred ecCCCEEEEeeeecCCCceEEECCCeeEEE
Confidence 999999999998774 56665554 45444
No 66
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=95.55 E-value=0.11 Score=49.73 Aligned_cols=97 Identities=26% Similarity=0.267 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCce---eeecCCCcccccC-CCCccCCCC
Q 018911 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKS---CCTSVNEVICHGI-PDSRKLEDG 226 (349)
Q Consensus 151 ~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~---v~~g~n~~~~H~~-p~~r~L~~G 226 (349)
.++..+.+.++++++.+.++||++-.||.+.+++.+.+.|..+. .+..++..- +-.|. .++... .++.+|++|
T Consensus 106 ~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i-~~~~GHgig~~~~h~g~--~ip~i~~~~~~~le~G 182 (295)
T TIGR00501 106 YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPI-SNLTGHSMAPYRLHGGK--SIPNVKERDTTKLEEG 182 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee-cCCCCcceecccccCCC--ccCeecCCCCCEeCCC
Confidence 47778888999999999999999999999999999999988763 233222210 00010 112111 235789999
Q ss_pred CeEEEeeecee-CcEEeceeeeEEe
Q 018911 227 DIVNIDVTVYY-KGVHGDLNETYFV 250 (349)
Q Consensus 227 DiV~iD~g~~~-~GY~~D~~RT~~v 250 (349)
+++.|+..... .|+..|..+|-..
T Consensus 183 mV~aIEP~~~~G~G~v~~~~~~~iy 207 (295)
T TIGR00501 183 DVVAIEPFATDGVGYVTDGGEVSIY 207 (295)
T ss_pred CEEEEceeEECCcCeEecCCCeEEE
Confidence 99999986553 6888777766544
No 67
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=95.46 E-value=0.17 Score=50.14 Aligned_cols=98 Identities=27% Similarity=0.283 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCC------CCccC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP------DSRKL 223 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p------~~r~L 223 (349)
..|+.-.+..++++++.++++||++-.||+....+.+.+.|....... ++...+ | ...-.|-.| +..+|
T Consensus 263 ~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~g~~~~~~h--~~GHgv--G-~~l~vhE~p~~~~~~~~~~L 337 (384)
T COG0006 263 EQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLH--GTGHGV--G-FVLDVHEHPQYLSPGSDTTL 337 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcCCcccccC--CccccC--C-CCcccCcCccccCCCCCccc
Confidence 345777889999999999999999999999999999999664332111 111111 1 011123223 46789
Q ss_pred CCCCeEEEeeecee-CcEEeceeeeEEecC
Q 018911 224 EDGDIVNIDVTVYY-KGVHGDLNETYFVGN 252 (349)
Q Consensus 224 ~~GDiV~iD~g~~~-~GY~~D~~RT~~vG~ 252 (349)
++|-++.++.+.++ +++-.-+..+++|.+
T Consensus 338 ~~GMv~t~Epg~y~~g~~GirIEd~vlVte 367 (384)
T COG0006 338 EPGMVFSIEPGIYIPGGGGVRIEDTVLVTE 367 (384)
T ss_pred cCCcEEEeccccccCCCceEEEEEEEEEcC
Confidence 99999999999885 668899999999965
No 68
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.062 Score=50.98 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCcee-eccccc--cccccCcCCCCcccccccCCCcccCC
Q 018911 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV-MHNVWF--AIVIHCYSTEDTKQCLVVSFSCFAKT 332 (349)
Q Consensus 256 e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v-~~~~GH--GIG~~~he~P~v~~~~~~~~~~~Le~ 332 (349)
.++++-+.++|.++.|-.++|||++-.||++++.+.+-++|.=.. ..|.|. ++-..+.|- +-| .-.+.+.||.
T Consensus 124 ~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEv--iCH--GIPD~RpLed 199 (369)
T KOG2738|consen 124 GMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEV--ICH--GIPDSRPLED 199 (369)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhhe--eec--CCCCcCcCCC
Confidence 467788889999999999999999999999999998877664211 111111 111111110 000 1123578999
Q ss_pred CcEEEEcC
Q 018911 333 GKIVLWSW 340 (349)
Q Consensus 333 Gmv~~le~ 340 (349)
|.+++++.
T Consensus 200 GDIvNiDV 207 (369)
T KOG2738|consen 200 GDIVNIDV 207 (369)
T ss_pred CCEEeEEE
Confidence 99998864
No 69
>PRK10879 proline aminopeptidase P II; Provisional
Probab=94.34 E-value=0.5 Score=47.82 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH----HcCCCCCC-------CCC-ccCCcee----eecCCCccc
Q 018911 151 MRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI----TAGGYPSP-------LNY-HFFPKSC----CTSVNEVIC 214 (349)
Q Consensus 151 ~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~----~~G~~ps~-------l~y-~~fp~~v----~~g~n~~~~ 214 (349)
.|++..++.++++++.+.++||++-.+|...+.+.+. +.|.-+.. -.+ ..|+..+ ...+.+. +
T Consensus 284 q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~-~ 362 (438)
T PRK10879 284 QREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDV-G 362 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcC-C
Confidence 4667778888999999999999999999887775543 33332100 000 0123222 1111211 1
Q ss_pred ccCC-CCccCCCCCeEEEeeeceeC----------cEEeceeeeEEec
Q 018911 215 HGIP-DSRKLEDGDIVNIDVTVYYK----------GVHGDLNETYFVG 251 (349)
Q Consensus 215 H~~p-~~r~L~~GDiV~iD~g~~~~----------GY~~D~~RT~~vG 251 (349)
+..+ ++++|++|.++.|+.+.+.. |+-.-+.-|++|.
T Consensus 363 ~~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT 410 (438)
T PRK10879 363 VYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVIT 410 (438)
T ss_pred CcCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEEC
Confidence 1112 35789999999999999863 5667788999985
No 70
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=94.07 E-value=0.43 Score=48.65 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCC-----ceeeecCCCccccc---CC---
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFP-----KSCCTSVNEVICHG---IP--- 218 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp-----~~v~~g~n~~~~H~---~p--- 218 (349)
..+....++.+|++.+++.++||++-.||++++++.+.+.|..- +...|| ..+.=|..-...|. +|
T Consensus 264 ~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevies~G~e~---~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v~ 340 (470)
T PTZ00053 264 KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEI---KGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVK 340 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc---cCcccccccccCCcccCCCCccccCCCcCCeeC
Confidence 45677788899999999999999999999999999999998520 000011 00110111112333 22
Q ss_pred --CCccCCCCCeEEEeeece-eCcEEeceeeeEEec
Q 018911 219 --DSRKLEDGDIVNIDVTVY-YKGVHGDLNETYFVG 251 (349)
Q Consensus 219 --~~r~L~~GDiV~iD~g~~-~~GY~~D~~RT~~vG 251 (349)
+..+|++|+++.|+..+. -.||..|-.++-...
T Consensus 341 ~~~~~~LeeGmVfaIEPf~stG~G~v~~~~~~siY~ 376 (470)
T PTZ00053 341 GGENTRMEEGELFAIETFASTGRGYVNEDLECSHYM 376 (470)
T ss_pred CCCCCEecCCCEEEEcceeeCCCCeEecCCCceeee
Confidence 346899999999998877 488988877766554
No 71
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=92.81 E-value=0.056 Score=33.67 Aligned_cols=28 Identities=39% Similarity=1.195 Sum_probs=21.6
Q ss_pred ccccccCcccccccchhhhcCCCCCCccccChhhhh
Q 018911 13 LSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFK 48 (349)
Q Consensus 13 ~~c~~c~~~~~l~cp~c~~~~~~~~~~~fc~~~cf~ 48 (349)
..|..|++.++-.||.|.. .+||-+|+|
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~--------~~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGA--------RYCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT----------EESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCC--------ceeCcEeEC
Confidence 4688899988899998873 389999997
No 72
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=91.63 E-value=3.5 Score=37.74 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhc-cCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceee--ecCCCc--ccccCCCCccCCCC
Q 018911 152 RETCRIAREVLDAAARMI-RPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCC--TSVNEV--ICHGIPDSRKLEDG 226 (349)
Q Consensus 152 R~Aa~ia~~al~~~~~~i-~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~--~g~n~~--~~H~~p~~r~L~~G 226 (349)
|++..++.++...+.+.+ +||++-.+|++.+.+.+.+.|.+-. ...++ .+. ....+. +.+...++++|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~~--h~~GH--gIG~~l~~hE~P~i~~~~~~~~~L~~G 189 (224)
T cd01085 114 KRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYG--HGTGH--GVGSFLNVHEGPQSISPAPNNVPLKAG 189 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC--CCCCC--CCCCCCcCCCCCCcCCcCCCCCCcCCC
Confidence 344445566666777666 5899999999999999988875310 00111 121 111221 11011245789999
Q ss_pred CeEEEeeeceeC-cEEeceeeeEEec
Q 018911 227 DIVNIDVTVYYK-GVHGDLNETYFVG 251 (349)
Q Consensus 227 DiV~iD~g~~~~-GY~~D~~RT~~vG 251 (349)
.++.|+-+.+.. .+..-+..|++|.
T Consensus 190 mvftiEP~iy~~g~~gvried~v~Vt 215 (224)
T cd01085 190 MILSNEPGYYKEGKYGIRIENLVLVV 215 (224)
T ss_pred CEEEECCEeEeCCCeEEEeeEEEEEe
Confidence 999999999864 4566788899885
No 73
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=90.71 E-value=0.18 Score=36.56 Aligned_cols=34 Identities=24% Similarity=0.672 Sum_probs=24.5
Q ss_pred ccchhhhcCCCCCCccccChhhhhhchhHHHHHhhh
Q 018911 25 QCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLK 60 (349)
Q Consensus 25 ~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~ 60 (349)
.||.|-+ .||. +.-|||++|-+..++.+|+..+.
T Consensus 5 HC~~CG~-~Ip~-~~~fCS~~C~~~~~k~qk~~~~~ 38 (59)
T PF09889_consen 5 HCPVCGK-PIPP-DESFCSPKCREEYRKRQKRMRKT 38 (59)
T ss_pred cCCcCCC-cCCc-chhhhCHHHHHHHHHHHHHHHHH
Confidence 3555542 2432 56789999999999999988753
No 74
>PRK13607 proline dipeptidase; Provisional
Probab=90.57 E-value=2.7 Score=42.72 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH----HHcCCCCC-------CCCC--ccCCce----eeecCCCccc
Q 018911 152 RETCRIAREVLDAAARMIRPGVTTDEIDRVVHEAT----ITAGGYPS-------PLNY--HFFPKS----CCTSVNEVIC 214 (349)
Q Consensus 152 R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~----~~~G~~ps-------~l~y--~~fp~~----v~~g~n~~~~ 214 (349)
++...++.++++++.+.++||++-.||....++.+ .+.|.... .-++ ..||.. +...+.+.-.
T Consensus 271 ~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~ 350 (443)
T PRK13607 271 AALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAG 350 (443)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCC
Confidence 46777889999999999999999999998877555 34443310 0000 013322 2222222210
Q ss_pred c----------------cCCCCccCCCCCeEEEeeeceeCc
Q 018911 215 H----------------GIPDSRKLEDGDIVNIDVTVYYKG 239 (349)
Q Consensus 215 H----------------~~p~~r~L~~GDiV~iD~g~~~~G 239 (349)
. ..-+.++|++|.++.|+-|+|+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~ 391 (443)
T PRK13607 351 FMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLYFID 391 (443)
T ss_pred cccccccccccccccccccccCCcCCCCcEEEECCeeeeCh
Confidence 0 011357899999999999998764
No 75
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=87.43 E-value=0.34 Score=35.36 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=18.8
Q ss_pred ccccchhhhcCC---CCCCccccChhhhhhc
Q 018911 23 HLQCPKCMELKL---PREGAAFCTQDCFKAS 50 (349)
Q Consensus 23 ~l~cp~c~~~~~---~~~~~~fc~~~cf~~~ 50 (349)
+..||+|.|.-. ...-..|||+-|-.-+
T Consensus 6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~ID 36 (62)
T PRK00418 6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLID 36 (62)
T ss_pred cccCCCCCCcccccCCCCcCCcccHHHHhhh
Confidence 467888888632 0114579999997655
No 76
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=87.02 E-value=2 Score=36.49 Aligned_cols=28 Identities=43% Similarity=1.208 Sum_probs=21.9
Q ss_pred cccccCc-ccccccchhhhcCCCCCCccccChhhhhh
Q 018911 14 SCVRCGK-PAHLQCPKCMELKLPREGAAFCTQDCFKA 49 (349)
Q Consensus 14 ~c~~c~~-~~~l~cp~c~~~~~~~~~~~fc~~~cf~~ 49 (349)
+|.-|.+ +.+-+||.|. .| +||-.|||-
T Consensus 7 tC~ic~e~~~KYKCpkC~---vP-----YCSl~CfKi 35 (157)
T KOG2857|consen 7 TCVICLESEIKYKCPKCS---VP-----YCSLPCFKI 35 (157)
T ss_pred eehhhhcchhhccCCCCC---Cc-----cccchhhhh
Confidence 5666887 4479999997 55 899999874
No 77
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.52 E-value=0.52 Score=34.45 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.1
Q ss_pred CccccChhhhhhc
Q 018911 38 GAAFCTQDCFKAS 50 (349)
Q Consensus 38 ~~~fc~~~cf~~~ 50 (349)
...|||+-|.-=+
T Consensus 25 frPFCSkRCklID 37 (65)
T COG3024 25 FRPFCSKRCKLID 37 (65)
T ss_pred cCcchhHhhhhcc
Confidence 5679999996554
No 78
>PRK01343 zinc-binding protein; Provisional
Probab=84.94 E-value=0.51 Score=33.85 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=17.8
Q ss_pred cccchhhhcCCCCCCccccChhhhhhc
Q 018911 24 LQCPKCMELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 24 l~cp~c~~~~~~~~~~~fc~~~cf~~~ 50 (349)
..||+|.|.-.. ....|||+-|-.-+
T Consensus 10 ~~CP~C~k~~~~-~~rPFCS~RC~~iD 35 (57)
T PRK01343 10 RPCPECGKPSTR-EAYPFCSERCRDID 35 (57)
T ss_pred CcCCCCCCcCcC-CCCcccCHHHhhhh
Confidence 556666665442 35679999997665
No 79
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=81.18 E-value=9 Score=36.79 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH----HHHcCCceeeccccccccccCcCCCCcccc-cccCCCcc
Q 018911 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH----ATMSGFSVVMHNVWFAIVIHCYSTEDTKQC-LVVSFSCF 329 (349)
Q Consensus 255 ~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~----~~~~G~~~v~~~~GHGIG~~~he~P~v~~~-~~~~~~~~ 329 (349)
.+.+++.++-+++...+.+.+|||++.-||-+.+++. +.+.|... ..|...|..+.. -..|| ++.+...+
T Consensus 86 ~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~a---Gi~FPtG~SlN~--cAAHyTpNaGd~tV 160 (397)
T KOG2775|consen 86 QDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNA---GIGFPTGCSLNH--CAAHYTPNAGDKTV 160 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhccccc---cccCCCcccccc--hhhhcCCCCCCcee
Confidence 4567777788888888889999999998888877654 44566542 222222222210 11111 13456788
Q ss_pred cCCCcEEEEcCC
Q 018911 330 AKTGKIVLWSWY 341 (349)
Q Consensus 330 Le~Gmv~~le~g 341 (349)
|+.+.|.-++-|
T Consensus 161 LqydDV~KiDfG 172 (397)
T KOG2775|consen 161 LKYDDVMKIDFG 172 (397)
T ss_pred eeecceEEEecc
Confidence 999888766655
No 80
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=80.76 E-value=0.54 Score=33.80 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=12.5
Q ss_pred ccchhhhcCCC---CCCccccChhhhhhc
Q 018911 25 QCPKCMELKLP---REGAAFCTQDCFKAS 50 (349)
Q Consensus 25 ~cp~c~~~~~~---~~~~~fc~~~cf~~~ 50 (349)
.||+|.|.-.. ..-..|||+-|-.-+
T Consensus 4 ~CP~C~k~~~~~~~n~~rPFCS~RCk~iD 32 (57)
T PF03884_consen 4 KCPICGKPVEWSPENPFRPFCSERCKLID 32 (57)
T ss_dssp E-TTT--EEE-SSSSS--SSSSHHHHHHH
T ss_pred cCCCCCCeecccCCCCcCCcccHhhcccC
Confidence 45666554332 014569999996544
No 81
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=71.67 E-value=16 Score=39.17 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCC----C-cccccCCCCccCC
Q 018911 150 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVN----E-VICHGIPDSRKLE 224 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n----~-~~~H~~p~~r~L~ 224 (349)
.|.+|-..--.+.++++..++||.+-.+|...+...+.+.+-.-.+ .|++.+.+|.. + .+.-..-+++.|+
T Consensus 258 emq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~----~~~k~lG~~iGlEFREssl~inaKnd~~lk 333 (960)
T KOG1189|consen 258 EMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVP----NFTKNLGFGIGLEFRESSLVINAKNDRVLK 333 (960)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhh----hhhhhcccccceeeecccccccccchhhhc
Confidence 3556766777788889999999999999999999999887644221 24444333321 1 1111223568999
Q ss_pred CCCeEEEeeece-------eCcEEeceeeeEEecC
Q 018911 225 DGDIVNIDVTVY-------YKGVHGDLNETYFVGN 252 (349)
Q Consensus 225 ~GDiV~iD~g~~-------~~GY~~D~~RT~~vG~ 252 (349)
.|++++|.+|.. .+-|.--++-|+.||+
T Consensus 334 ~gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e 368 (960)
T KOG1189|consen 334 KGMVFNISLGFSNLTNPESKNSYALLLSDTVLVGE 368 (960)
T ss_pred cCcEEEEeeccccccCcccccchhhhccceeeecC
Confidence 999999999864 2457777899999985
No 82
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=71.02 E-value=1.2 Score=30.21 Aligned_cols=37 Identities=27% Similarity=0.623 Sum_probs=25.7
Q ss_pred cccccCcccc---cccchhhhcCCCCCCccccChhhhhhchhHHHHHh
Q 018911 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~~~~---l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h 58 (349)
.|.+|+++.. .+|-.|.... -=++||......|+.-|
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~d--------LC~~Cf~~~~~~H~~~H 41 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFD--------LCSSCYAKGKKGHPPDH 41 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCc--------CHHHHHCcCcCCCCCCC
Confidence 5888888665 6777776433 34789998876666555
No 83
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=70.84 E-value=1.8 Score=30.44 Aligned_cols=10 Identities=30% Similarity=0.979 Sum_probs=8.0
Q ss_pred ccccChhhhh
Q 018911 39 AAFCTQDCFK 48 (349)
Q Consensus 39 ~~fc~~~cf~ 48 (349)
=|||||+|-.
T Consensus 28 YYFcse~~~~ 37 (53)
T COG3350 28 YYFCSEECKE 37 (53)
T ss_pred EEEeCHHHHH
Confidence 5899999943
No 84
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=68.87 E-value=17 Score=27.57 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=32.7
Q ss_pred ccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCC-cccccCCCCccCCCCCeEEE
Q 018911 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE-VICHGIPDSRKLEDGDIVNI 231 (349)
Q Consensus 169 i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~-~~~H~~p~~r~L~~GDiV~i 231 (349)
++.|.|-.|++..+|..+.++=.+. ...|... .-....+-+.+|++||+|.|
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~A-----------~v~g~s~~~~gq~Vgl~~~L~d~DvVeI 73 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKYA-----------LVWGSSVKHSPQRVGLDHVLEDEDVVQI 73 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCee-----------EEeccCCcCCCeECCCCCEecCCCEEEE
Confidence 4569999999999998876652211 1112111 11223455788999999987
No 85
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=65.91 E-value=4 Score=26.88 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=17.3
Q ss_pred ccccccCcccccccc-hhhhcCCCCCCccccChhhhhh
Q 018911 13 LSCVRCGKPAHLQCP-KCMELKLPREGAAFCTQDCFKA 49 (349)
Q Consensus 13 ~~c~~c~~~~~l~cp-~c~~~~~~~~~~~fc~~~cf~~ 49 (349)
..|..|++.....=- .-+..+- ..-.|||+.|...
T Consensus 7 ~~C~~C~~~~~~~~~~~~~~~~g--~~~~FCS~~C~~~ 42 (43)
T PF06467_consen 7 KTCSYCKKYIPNKPTMIEVQYDG--KMKQFCSQSCLSS 42 (43)
T ss_dssp EE-TTT--EEECCC----EE-TT--TTSCCSSHHHHHH
T ss_pred CcCcccCCcccCCCccccccccC--cccChhCHHHHhh
Confidence 458888887642210 1222222 2568999999875
No 86
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=64.36 E-value=7.3 Score=27.79 Aligned_cols=38 Identities=24% Similarity=0.859 Sum_probs=28.7
Q ss_pred ccccCc----ccccccchhhhcCCCCCCccccChhhhhhchhHHHHHhh
Q 018911 15 CVRCGK----PAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (349)
Q Consensus 15 c~~c~~----~~~l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 59 (349)
|.-|.+ ...+.||.| ||| ++||.+=.+.+...|+++-.
T Consensus 2 Cpv~~~~~~~~v~~~Cp~c---Gip----thcS~ehw~~D~e~H~~~c~ 43 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDC---GIP----THCSEEHWEDDYEEHRQLCE 43 (55)
T ss_pred CCCCccccccccCCcCCCC---CCc----CccCHHHHHHhHHHHHHHHH
Confidence 555666 556889977 475 68999988888888887653
No 87
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=63.56 E-value=2.6 Score=43.25 Aligned_cols=38 Identities=24% Similarity=0.828 Sum_probs=30.0
Q ss_pred ccccCcccccccchhhhcCCCCCCccccChhhhhhchhHHHHHhhhh
Q 018911 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKA 61 (349)
Q Consensus 15 c~~c~~~~~l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~ 61 (349)
|..|.++|-+-| |- ..-|||-+|...+|++|++..+..
T Consensus 530 C~nC~~EAiy~C--CW-------NTSYCsveCQQ~HW~~H~ksCrrk 567 (588)
T KOG3612|consen 530 CYNCLDEAIYHC--CW-------NTSYCSVECQQGHWPEHRKSCRRK 567 (588)
T ss_pred HHhhhHHHHHHh--hc-------cccccCcchhhccchhHhhhhccc
Confidence 888888888665 22 233599999999999999988654
No 88
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.94 E-value=1.7 Score=36.22 Aligned_cols=20 Identities=35% Similarity=0.931 Sum_probs=17.1
Q ss_pred cccccccCcccccccchhhh
Q 018911 12 SLSCVRCGKPAHLQCPKCME 31 (349)
Q Consensus 12 ~~~c~~c~~~~~l~cp~c~~ 31 (349)
...|+.||+.+-+|||.|..
T Consensus 28 eafcskcgeati~qcp~csa 47 (160)
T COG4306 28 EAFCSKCGEATITQCPICSA 47 (160)
T ss_pred HHHHhhhchHHHhcCCccCC
Confidence 45699999998899999975
No 89
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=55.49 E-value=6 Score=23.71 Aligned_cols=17 Identities=35% Similarity=0.995 Sum_probs=12.0
Q ss_pred cccccCcccc---cccchhh
Q 018911 14 SCVRCGKPAH---LQCPKCM 30 (349)
Q Consensus 14 ~c~~c~~~~~---l~cp~c~ 30 (349)
.|..|++... ..||.|-
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG 21 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCG 21 (26)
T ss_pred cCCCCcCCchhhcCcCCCCC
Confidence 5888888776 5677663
No 90
>PRK04023 DNA polymerase II large subunit; Validated
Probab=54.03 E-value=7.5 Score=42.97 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=22.5
Q ss_pred ccccccccccccCcccc-cccchhhhcCCCCCCccccCh
Q 018911 7 AAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (349)
Q Consensus 7 ~~~~~~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~~ 44 (349)
..+...+.|..||+.+. .+||.|-+.-- ..+||..
T Consensus 621 eVEVg~RfCpsCG~~t~~frCP~CG~~Te---~i~fCP~ 656 (1121)
T PRK04023 621 EVEIGRRKCPSCGKETFYRRCPFCGTHTE---PVYRCPR 656 (1121)
T ss_pred eecccCccCCCCCCcCCcccCCCCCCCCC---cceeCcc
Confidence 34445677888888755 77888876522 3556654
No 91
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=52.83 E-value=5.8 Score=38.69 Aligned_cols=34 Identities=32% Similarity=0.758 Sum_probs=26.2
Q ss_pred cccccccccccCcccc-cccchhhhcCCCCCCccccChhhhhh
Q 018911 8 AETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQDCFKA 49 (349)
Q Consensus 8 ~~~~~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~~~cf~~ 49 (349)
.+-+...|..|+++.. -+||.|+ +-|||=+|-|.
T Consensus 13 ~~~~~vlCgVClknE~KYkCPRCl--------~rtCsLeCskk 47 (390)
T KOG2858|consen 13 GGLHSVLCGVCLKNEPKYKCPRCL--------ARTCSLECSKK 47 (390)
T ss_pred cccchhhhhhcccCcccccCcchh--------hhheecccccc
Confidence 3445567988999877 8999998 34799998764
No 92
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=52.81 E-value=7.4 Score=27.42 Aligned_cols=20 Identities=20% Similarity=0.703 Sum_probs=14.9
Q ss_pred hcCCCCCCccccChhhhhhc
Q 018911 31 ELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 31 ~~~~~~~~~~fc~~~cf~~~ 50 (349)
+..|.+++.||||+.|-+..
T Consensus 20 ~~Ai~~dGk~YCS~aCA~gH 39 (52)
T PF02069_consen 20 EEAIQKDGKYYCSEACANGH 39 (52)
T ss_dssp TTSEESSS-EESSHHHHHTS
T ss_pred hHhHHhCCEeeecHHHhccC
Confidence 44566778999999998774
No 93
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=51.90 E-value=38 Score=33.35 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCceeec--ccccccc---------ccCcCCCCccccccc
Q 018911 256 ASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMH--NVWFAIV---------IHCYSTEDTKQCLVV 324 (349)
Q Consensus 256 e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~~G~~~v~~--~~GHGIG---------~~~he~P~v~~~~~~ 324 (349)
..+.+-+.+..++...++.++||++..||-......+.+.-=.+++. ..--||. ...|-.|...
T Consensus 23 KYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT~Isvnncv~h~sPlks----- 97 (398)
T KOG2776|consen 23 KYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPTSISVNNCVCHFSPLKS----- 97 (398)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccceecccceeeccCcCCC-----
Confidence 45566677888888899999999999998776665554322111111 1111221 1223445554
Q ss_pred CCCcccCCCcEEEEcCC
Q 018911 325 SFSCFAKTGKIVLWSWY 341 (349)
Q Consensus 325 ~~~~~Le~Gmv~~le~g 341 (349)
+.+.+|++|.|+-++.|
T Consensus 98 d~~~~Lk~GDvVKIdLG 114 (398)
T KOG2776|consen 98 DADYTLKEGDVVKIDLG 114 (398)
T ss_pred CCcccccCCCEEEEEee
Confidence 34789999999877644
No 94
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=51.37 E-value=8.3 Score=22.86 Aligned_cols=17 Identities=35% Similarity=1.048 Sum_probs=8.7
Q ss_pred ccccccCcccc---cccchh
Q 018911 13 LSCVRCGKPAH---LQCPKC 29 (349)
Q Consensus 13 ~~c~~c~~~~~---l~cp~c 29 (349)
..|..||++.. .-||.|
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~C 22 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNC 22 (26)
T ss_pred CCCcccCCcCCcccccChhh
Confidence 35666666433 445554
No 95
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=49.58 E-value=4.1 Score=28.08 Aligned_cols=37 Identities=27% Similarity=0.722 Sum_probs=23.7
Q ss_pred cccccCcccc----cccchhhhcCCCCCCccccChhhhhhch--hHHHHHh
Q 018911 14 SCVRCGKPAH----LQCPKCMELKLPREGAAFCTQDCFKASW--TSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~~~~----l~cp~c~~~~~~~~~~~fc~~~cf~~~w--~~hk~~h 58 (349)
.|.+|.++.. .+|..|.+.. .-++||...= ..|+.-|
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~d--------LC~~Cf~~g~~~~~H~~~H 44 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFD--------LCLECFSAGAEIGKHRNDH 44 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcc--------hhHHhhhCcCCCCCCCCCC
Confidence 4888888655 6788886433 3468998762 2454444
No 96
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=47.23 E-value=23 Score=27.16 Aligned_cols=51 Identities=27% Similarity=0.272 Sum_probs=38.4
Q ss_pred CccCCCCCeEEEeeecee-CcEEecee------eeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018911 220 SRKLEDGDIVNIDVTVYY-KGVHGDLN------ETYFVGNADEASRQLVQCTYECLEKAISIVKPGV 279 (349)
Q Consensus 220 ~r~L~~GDiV~iD~g~~~-~GY~~D~~------RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~ 279 (349)
++..++||.|.|++.++. +|-.-|-+ .+|.+|.- ....+++.++..+++|-
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~---------~~i~g~e~al~~m~~Ge 59 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSG---------QVIPGLEEALIGMKVGE 59 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSS---------SSSHHHHHHHTTSBTTE
T ss_pred CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccC---------ccccchhhhcccccCCC
Confidence 356889999999999987 78777766 66777741 14457788888888884
No 97
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=46.89 E-value=5.3 Score=27.63 Aligned_cols=37 Identities=27% Similarity=0.689 Sum_probs=24.2
Q ss_pred cccccCc-ccc---cccchhhhcCCCCCCccccChhhhhhch--hHHHHHh
Q 018911 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASW--TSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~-~~~---l~cp~c~~~~~~~~~~~fc~~~cf~~~w--~~hk~~h 58 (349)
.|.+|.+ +.+ .+|-.|.... --++||...= ..|+..|
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dyd--------LC~~Cf~~~~~~~~H~~~H 44 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYS--------LCLGCYTKGRETKRHNSLH 44 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcC--------chHHHHhCCCcCCCCCCCC
Confidence 5888988 665 7788886433 3468998652 4555555
No 98
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=45.39 E-value=72 Score=33.89 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=47.5
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeee--cCCC---cccccCCCCccCCCCCeEEEee
Q 018911 159 REVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT--SVNE---VICHGIPDSRKLEDGDIVNIDV 233 (349)
Q Consensus 159 ~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~--g~n~---~~~H~~p~~r~L~~GDiV~iD~ 233 (349)
-...+.+...++||.+--+|...+...+.+.|-+-.| +|-..+.. |... ..+...-++|+||.|++++|.+
T Consensus 308 ~~lQk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~p----nF~~nvG~~igiefR~s~~~~nvkn~r~lq~g~~fnis~ 383 (1001)
T COG5406 308 YMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGP----NFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAGCIFNISL 383 (1001)
T ss_pred HHHHHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCc----hHhhhhhhhccccccccccceeccCCceeccccEEEEee
Confidence 3444566678999999999999999999988764321 13222222 2111 1223334569999999999998
Q ss_pred e
Q 018911 234 T 234 (349)
Q Consensus 234 g 234 (349)
|
T Consensus 384 g 384 (1001)
T COG5406 384 G 384 (1001)
T ss_pred c
Confidence 5
No 99
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=43.85 E-value=7 Score=27.12 Aligned_cols=37 Identities=35% Similarity=0.770 Sum_probs=22.6
Q ss_pred cccccCc-ccc---cccchhhhcCCCCCCccccChhhhhhc--hhHHHHHh
Q 018911 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKAS--WTSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~-~~~---l~cp~c~~~~~~~~~~~fc~~~cf~~~--w~~hk~~h 58 (349)
.|.+|++ ++. .+|-.|.... --|+||... =..||.-|
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~D--------LC~~Cf~~g~~~~~H~~~H 44 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYD--------LCQSCFFSGRTSKSHKNSH 44 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcC--------chHHHHhCCCcCCCCCCCC
Confidence 4888886 444 6777776433 347888654 23455544
No 100
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=43.75 E-value=10 Score=31.02 Aligned_cols=22 Identities=32% Similarity=0.747 Sum_probs=16.3
Q ss_pred cccccccCcccc-----cccchhhhcC
Q 018911 12 SLSCVRCGKPAH-----LQCPKCMELK 33 (349)
Q Consensus 12 ~~~c~~c~~~~~-----l~cp~c~~~~ 33 (349)
+-.|.+|+|+++ -+|+-|.+.-
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~~pL 95 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCKEPL 95 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCCCcC
Confidence 346999999886 5688877643
No 101
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=43.08 E-value=11 Score=25.51 Aligned_cols=21 Identities=33% Similarity=0.980 Sum_probs=14.8
Q ss_pred ccccccccCccc-------ccccchhhh
Q 018911 11 TSLSCVRCGKPA-------HLQCPKCME 31 (349)
Q Consensus 11 ~~~~c~~c~~~~-------~l~cp~c~~ 31 (349)
+...|..||... .+.||.|-.
T Consensus 2 ~~y~C~~CG~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 2 AEYKCARCGREVELDEYGTGVRCPYCGY 29 (46)
T ss_pred CEEECCCCCCEEEECCCCCceECCCCCC
Confidence 345799998743 378998863
No 102
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=42.12 E-value=9.5 Score=26.55 Aligned_cols=22 Identities=32% Similarity=0.991 Sum_probs=16.6
Q ss_pred ccccccccccCcccc-------cccchhh
Q 018911 9 ETTSLSCVRCGKPAH-------LQCPKCM 30 (349)
Q Consensus 9 ~~~~~~c~~c~~~~~-------l~cp~c~ 30 (349)
+++...|..||+... .+||-|-
T Consensus 3 ~~~~Y~C~~Cg~~~~~~~~~~~irCp~Cg 31 (49)
T COG1996 3 AMMEYKCARCGREVELDQETRGIRCPYCG 31 (49)
T ss_pred ceEEEEhhhcCCeeehhhccCceeCCCCC
Confidence 466778999998554 6799774
No 103
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=40.90 E-value=10 Score=23.54 Aligned_cols=20 Identities=40% Similarity=1.017 Sum_probs=11.1
Q ss_pred cccccccCcccc-------cccchhhh
Q 018911 12 SLSCVRCGKPAH-------LQCPKCME 31 (349)
Q Consensus 12 ~~~c~~c~~~~~-------l~cp~c~~ 31 (349)
.+.|..||.++. ++||.|-.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 356888887544 78887753
No 104
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=40.09 E-value=11 Score=25.97 Aligned_cols=39 Identities=31% Similarity=0.578 Sum_probs=26.6
Q ss_pred cccccCc-ccc---cccchhhhcCCCCCCccccChhhhhhchhHHHHHhh
Q 018911 14 SCVRCGK-PAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHL 59 (349)
Q Consensus 14 ~c~~c~~-~~~---l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~ 59 (349)
.|.+|++ ++. .+|..|..- .|=--|+||...= .||..|.
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~------d~DlC~~C~~~~~-~H~~~H~ 44 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDG------DFDLCQDCVVKGE-SHQEDHW 44 (48)
T ss_pred CCCCCCCCccccceEECCCCCCC------CCccCHHHHhCcC-CCCCCCc
Confidence 5888988 655 778888742 2334468998764 6777664
No 105
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=39.90 E-value=16 Score=26.50 Aligned_cols=21 Identities=33% Similarity=0.843 Sum_probs=11.4
Q ss_pred cccccCcccccccchhhhcCC
Q 018911 14 SCVRCGKPAHLQCPKCMELKL 34 (349)
Q Consensus 14 ~c~~c~~~~~l~cp~c~~~~~ 34 (349)
.|..||+..--+|-+|-|+|.
T Consensus 29 ~CPnCGe~~I~Rc~~CRk~g~ 49 (61)
T COG2888 29 PCPNCGEVEIYRCAKCRKLGN 49 (61)
T ss_pred eCCCCCceeeehhhhHHHcCC
Confidence 355555544455556666554
No 106
>PF12773 DZR: Double zinc ribbon
Probab=39.79 E-value=19 Score=24.46 Aligned_cols=31 Identities=35% Similarity=0.840 Sum_probs=22.6
Q ss_pred ccccccccCcccc------cccchhhhcCCCCCCccccC
Q 018911 11 TSLSCVRCGKPAH------LQCPKCMELKLPREGAAFCT 43 (349)
Q Consensus 11 ~~~~c~~c~~~~~------l~cp~c~~~~~~~~~~~fc~ 43 (349)
..+.|..||.+.. +.||.|....-+ ...||.
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~--~~~fC~ 47 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAENPP--NAKFCP 47 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCCcC--CcCccC
Confidence 3567988987654 569999998543 677875
No 107
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=39.48 E-value=71 Score=20.15 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 018911 154 TCRIAREVLDAAARMIRPGVTTDEIDRVVHEATI 187 (349)
Q Consensus 154 Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~ 187 (349)
.+.+...++..+...++...|+.+|...+++.+.
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 3567788899999999999999999999988764
No 108
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=39.35 E-value=17 Score=26.30 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=12.0
Q ss_pred cccccCcccccccchhhhcCC
Q 018911 14 SCVRCGKPAHLQCPKCMELKL 34 (349)
Q Consensus 14 ~c~~c~~~~~l~cp~c~~~~~ 34 (349)
.|..||+..--+|.+|-|++.
T Consensus 27 ~CPnCG~~~I~RC~~CRk~~~ 47 (59)
T PRK14890 27 LCPNCGEVIIYRCEKCRKQSN 47 (59)
T ss_pred eCCCCCCeeEeechhHHhcCC
Confidence 455566553455666666554
No 109
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=39.16 E-value=8.3 Score=26.61 Aligned_cols=29 Identities=28% Similarity=0.789 Sum_probs=19.3
Q ss_pred cccccC-cccc---cccchhhhcCCCCCCccccChhhhhhc
Q 018911 14 SCVRCG-KPAH---LQCPKCMELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 14 ~c~~c~-~~~~---l~cp~c~~~~~~~~~~~fc~~~cf~~~ 50 (349)
.|.+|+ ++.. .+|-.|.... --++||...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~d--------lC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYD--------LCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCc--------cchhHHhCC
Confidence 488888 5555 6677775433 346899865
No 110
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=38.13 E-value=1.4e+02 Score=29.65 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=47.2
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEEeeeceeCcEEecee----eeE
Q 018911 173 VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLN----ETY 248 (349)
Q Consensus 173 ~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D~~----RT~ 248 (349)
+|+.+|+..+.+....++-+- + -.+++++.||.|.+|+....+|=..+-+ .+|
T Consensus 120 vtde~vd~~i~~l~~~~a~~~--------~---------------~~~~~~~~gD~V~v~~~~~~dg~~~~~~~~~~~~~ 176 (408)
T TIGR00115 120 VTDEDVDEELEKLREQNATLV--------P---------------VERRAAEKGDRVTIDFEGFIDGEAFEGGKAENFSL 176 (408)
T ss_pred CCHHHHHHHHHHHHHhCCccc--------c---------------ccccccCCCCEEEEEEEEEECCEECcCCCCCCeEE
Confidence 578888888887776655321 0 1235789999999999987776554432 367
Q ss_pred EecCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Q 018911 249 FVGNADEASRQLVQCTYECLEKAISIVKPGV 279 (349)
Q Consensus 249 ~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~ 279 (349)
.+|.. .+...++.++.-++.|-
T Consensus 177 ~lg~~---------~~~~~~ee~L~G~k~Gd 198 (408)
T TIGR00115 177 ELGSG---------QFIPGFEEQLVGMKAGE 198 (408)
T ss_pred EECCC---------CcchhHHHHhCCCCCCC
Confidence 77741 12234555566666663
No 111
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=38.08 E-value=13 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.716 Sum_probs=15.2
Q ss_pred cccchhhhcCCCCCCccccChhhhh
Q 018911 24 LQCPKCMELKLPREGAAFCTQDCFK 48 (349)
Q Consensus 24 l~cp~c~~~~~~~~~~~fc~~~cf~ 48 (349)
-.|+.|-|. ||. +--|||.+|-.
T Consensus 9 ~HC~VCg~a-Ip~-de~~CSe~C~e 31 (64)
T COG4068 9 RHCVVCGKA-IPP-DEQVCSEECGE 31 (64)
T ss_pred ccccccCCc-CCC-ccchHHHHHHH
Confidence 346666553 432 77899999973
No 112
>PRK01490 tig trigger factor; Provisional
Probab=37.02 E-value=1e+02 Score=30.89 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEEeeeceeCcEEec----eeeeE
Q 018911 173 VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGD----LNETY 248 (349)
Q Consensus 173 ~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~iD~g~~~~GY~~D----~~RT~ 248 (349)
+|+.+|+..+.+....++-+ .+.+++++.||.|.||+....+|=.-+ -..+|
T Consensus 132 vtde~vd~~i~~l~~~~a~~------------------------~~~~~~~~~gD~V~vd~~~~~~g~~~~~~~~~~~~~ 187 (435)
T PRK01490 132 VTDEDVDEELERLRKQFATL------------------------VPVERPAENGDRVTIDFVGSIDGEEFEGGKAEDFSL 187 (435)
T ss_pred CCHHHHHHHHHHHHHhCCcc------------------------ccccccCCCCCEEEEEEEEEECCEECcCCCCCceEE
Confidence 57777777777666554422 122367899999999999887774432 23566
Q ss_pred EecC
Q 018911 249 FVGN 252 (349)
Q Consensus 249 ~vG~ 252 (349)
.+|.
T Consensus 188 ~lg~ 191 (435)
T PRK01490 188 ELGS 191 (435)
T ss_pred EEcC
Confidence 6764
No 113
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=36.64 E-value=16 Score=29.68 Aligned_cols=22 Identities=36% Similarity=0.845 Sum_probs=15.4
Q ss_pred ccccccccCc------ccccccchhhhc
Q 018911 11 TSLSCVRCGK------PAHLQCPKCMEL 32 (349)
Q Consensus 11 ~~~~c~~c~~------~~~l~cp~c~~~ 32 (349)
.+|+|..||+ --...||.|-..
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG~~ 35 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCGTE 35 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCCCc
Confidence 3689999986 122679988754
No 114
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=35.13 E-value=69 Score=24.15 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=29.9
Q ss_pred ccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEE
Q 018911 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (349)
Q Consensus 169 i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~i 231 (349)
++.|.|-.|++..+|..+.+.=.+. .-.| ......+..|++||+|.|
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~F~~A-----------~v~~-----~~~vg~d~~l~d~DVv~i 74 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKGFIEA-----------VGGR-----RRLEGKDVILGKNDILKF 74 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhccEEE-----------EEcc-----CEEECCCEEecCCCEEEE
Confidence 4558899999999998776542211 1111 122234667999999987
No 115
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=34.15 E-value=19 Score=27.33 Aligned_cols=12 Identities=58% Similarity=1.423 Sum_probs=10.6
Q ss_pred ccccChhhhhhc
Q 018911 39 AAFCTQDCFKAS 50 (349)
Q Consensus 39 ~~fc~~~cf~~~ 50 (349)
+.|||..||+++
T Consensus 59 ~~fCS~~C~~~s 70 (79)
T PF04181_consen 59 SKFCSKDCYKAS 70 (79)
T ss_pred cCcCCHHHHHHH
Confidence 479999999986
No 116
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=33.62 E-value=1e+02 Score=22.83 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Q 018911 253 ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (349)
Q Consensus 253 ~~~e~~~l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~ 294 (349)
.+.+++.+.+.+.+.++.+++.++.|.+..=+...++...+.
T Consensus 10 ~~~Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~ 51 (73)
T PF12631_consen 10 TNARQRQLLEQALEHLEDALEALENGLPLDLVAEDLREALES 51 (73)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999997765555555554444
No 117
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=33.46 E-value=26 Score=37.46 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=24.5
Q ss_pred cccccccCcccc-cccchhhhcCCCCCCccccCh
Q 018911 12 SLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (349)
Q Consensus 12 ~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~~ 44 (349)
.+.|..||.+.. ..||.|-+..-+ +.-||.+
T Consensus 15 akFC~~CG~~l~~~~Cp~CG~~~~~--~~~fC~~ 46 (645)
T PRK14559 15 NRFCQKCGTSLTHKPCPQCGTEVPV--DEAHCPN 46 (645)
T ss_pred CccccccCCCCCCCcCCCCCCCCCc--ccccccc
Confidence 457999999865 789999998654 7789865
No 118
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=32.41 E-value=20 Score=23.02 Aligned_cols=19 Identities=26% Similarity=0.870 Sum_probs=12.5
Q ss_pred ccccccCc------------ccccccchhhh
Q 018911 13 LSCVRCGK------------PAHLQCPKCME 31 (349)
Q Consensus 13 ~~c~~c~~------------~~~l~cp~c~~ 31 (349)
-.|..|+. ..+++|+.|..
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 45777765 22388998864
No 119
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=32.33 E-value=22 Score=20.56 Aligned_cols=8 Identities=38% Similarity=1.099 Sum_probs=3.7
Q ss_pred ccccCccc
Q 018911 15 CVRCGKPA 22 (349)
Q Consensus 15 c~~c~~~~ 22 (349)
|..||++.
T Consensus 2 Cp~CG~~~ 9 (23)
T PF13240_consen 2 CPNCGAEI 9 (23)
T ss_pred CcccCCCC
Confidence 44455543
No 120
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=32.31 E-value=20 Score=24.28 Aligned_cols=18 Identities=28% Similarity=0.931 Sum_probs=12.7
Q ss_pred ccccccCcccc------cccchhh
Q 018911 13 LSCVRCGKPAH------LQCPKCM 30 (349)
Q Consensus 13 ~~c~~c~~~~~------l~cp~c~ 30 (349)
..|..||.+.. ++||.|-
T Consensus 3 Y~C~~Cg~~~~~~~~~~irC~~CG 26 (44)
T smart00659 3 YICGECGRENEIKSKDVVRCRECG 26 (44)
T ss_pred EECCCCCCEeecCCCCceECCCCC
Confidence 46888988544 7788774
No 121
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=32.11 E-value=25 Score=23.72 Aligned_cols=17 Identities=18% Similarity=0.685 Sum_probs=13.3
Q ss_pred CCCccccChhhhhhchh
Q 018911 36 REGAAFCTQDCFKASWT 52 (349)
Q Consensus 36 ~~~~~fc~~~cf~~~w~ 52 (349)
.+.+-+||++|-..++.
T Consensus 20 ~~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 20 DDGSLYCSEECRLKDQE 36 (43)
T ss_pred CCCccccCHHHHhHhhh
Confidence 34788999999887754
No 122
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=31.95 E-value=1.6e+02 Score=28.98 Aligned_cols=129 Identities=15% Similarity=0.251 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCcc-C---Cce--------------
Q 018911 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHF-F---PKS-------------- 204 (349)
Q Consensus 143 Ks~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~-f---p~~-------------- 204 (349)
-|+.||+.+-++-..-+..+......+-|..++.||...++.++.+.-..|. +|..+ | +.-
T Consensus 97 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~sVldt~~SPT-iNlN~lf~~~~~d~~~~~~LQ~~~~~l 175 (381)
T PF09506_consen 97 VSDAELAFLAAVPERMEALLKEFLPAILPELSQEEIEKLIEASVLDTRVSPT-INLNSLFDLVPDDVERQQQLQQMMQEL 175 (381)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc-cchHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998877764 33111 1 100
Q ss_pred --------eeec-CCCcccccCCCC----------ccCCCCCeEEEeeece-------------eCcEEeceeeeEEec-
Q 018911 205 --------CCTS-VNEVICHGIPDS----------RKLEDGDIVNIDVTVY-------------YKGVHGDLNETYFVG- 251 (349)
Q Consensus 205 --------v~~g-~n~~~~H~~p~~----------r~L~~GDiV~iD~g~~-------------~~GY~~D~~RT~~vG- 251 (349)
.+-| .|+...|..|+- ++-..||+=.-|+--. .+-|..+-+-++.+|
T Consensus 176 M~~Ll~~A~~~GL~~SFFlH~aPNLGrd~~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~ 255 (381)
T PF09506_consen 176 MNELLEKAEAQGLENSFFLHYAPNLGRDANGREILKPATAGDVGTTDIQFMLRGAIKEAGLLVLLNRYIAQRTGKAPLGE 255 (381)
T ss_pred HHHHHHHHHhCCcccceEEEeCCCCCCCCCcceeecccccCCCCchhhhhhhhhhhhhcchhHHHHHHHHhhcCCCCccC
Confidence 1223 356778888851 2345677666665332 244666666666666
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHH
Q 018911 252 -----NADEASRQLVQCTYECLEKAI 272 (349)
Q Consensus 252 -----~~~~e~~~l~~~~~ea~~~ai 272 (349)
..+.....+++.+.+......
T Consensus 256 ~FNvR~AP~~h~~Ll~L~~~~i~~~~ 281 (381)
T PF09506_consen 256 DFNVRQAPKSHQELLDLCKENIPPEQ 281 (381)
T ss_pred ccccccCchhHHHHHHHHHhhCCHHH
Confidence 467778888888877766544
No 123
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=31.38 E-value=22 Score=40.47 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=18.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHH
Q 018911 141 EIKTPDQIERMRETCRIAREVLDAAA 166 (349)
Q Consensus 141 ~iKs~~EIe~~R~Aa~ia~~al~~~~ 166 (349)
.|.+..--+.|-+.++..+.-|+...
T Consensus 837 iil~~~aa~yl~~va~fiDdLL~k~Y 862 (1337)
T PRK14714 837 IVLSDGAAEYLLKVAKFVDDLLEKFY 862 (1337)
T ss_pred EEcchHHHHHHHHHHHHHHHHHHHhh
Confidence 45666667778888888777776554
No 124
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=30.90 E-value=20 Score=24.17 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=8.6
Q ss_pred ccccChhhhhh
Q 018911 39 AAFCTQDCFKA 49 (349)
Q Consensus 39 ~~fc~~~cf~~ 49 (349)
=+|||+.|-..
T Consensus 25 Y~FCS~~C~~~ 35 (47)
T PF04945_consen 25 YYFCSEGCKEK 35 (47)
T ss_dssp EEESSHHHHHH
T ss_pred EEEcCHHHHHH
Confidence 47999999544
No 125
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=30.10 E-value=1.7e+02 Score=28.81 Aligned_cols=129 Identities=16% Similarity=0.239 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCCCCCCCcc-C---Cce--------------
Q 018911 143 KTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHF-F---PKS-------------- 204 (349)
Q Consensus 143 Ks~~EIe~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~-f---p~~-------------- 204 (349)
-|+.||+.+-++-..-+..+..-...+-|..++.||...++.++.+.-..|. +|..+ | +.-
T Consensus 103 Vs~~El~FLa~vP~~m~~~L~~~l~~~~p~l~~~~i~~~~~~aVldt~~SPT-iNlN~lf~~v~~d~~~~~~LQ~~~~~l 181 (389)
T TIGR02399 103 VSKEEVDFLAAVPDLMRPSLEQIVKKIFPNLVQEEIQTHASKSVLDTRFSPT-INLNSLFDLVKDDSEIRKILQKSFEDL 181 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCcccCHHHHHHHHHHHHhcCCCCCc-cchHHHHHHccchHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998877664 22111 1 100
Q ss_pred --------eeec-CCCcccccCCCC---------ccCCCCCeEEEeeecee-------------CcEEeceeeeEEec--
Q 018911 205 --------CCTS-VNEVICHGIPDS---------RKLEDGDIVNIDVTVYY-------------KGVHGDLNETYFVG-- 251 (349)
Q Consensus 205 --------v~~g-~n~~~~H~~p~~---------r~L~~GDiV~iD~g~~~-------------~GY~~D~~RT~~vG-- 251 (349)
.+-| .|+...|..|+- ++-..||+=.-|+--.. |-|..+-+-++.+|
T Consensus 182 M~~Ll~~A~~~GL~~SFFlH~aPNLG~d~G~E~lk~A~~~d~GTTDiQfml~GaiKEaGlL~LlN~~i~~rtG~~PlG~~ 261 (389)
T TIGR02399 182 MNELMYKAKTQGLENSFFLHIAPNLGSDNGNEIIKLASKGDIGTTDIQFMLKGAVKEAGVLFLLNKFIYDSTGIAPLGRN 261 (389)
T ss_pred HHHHHHHHHhCCcccceEEEeCCcCCCccccEeecccCCCCCCchhhHHHhcchhhhhhHHHHHHHHHHhccCCCCCCCC
Confidence 1223 356778888851 24456777776664332 34555555555555
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHH
Q 018911 252 ----NADEASRQLVQCTYECLEKAI 272 (349)
Q Consensus 252 ----~~~~e~~~l~~~~~ea~~~ai 272 (349)
+.+..+..+++.+.+......
T Consensus 262 FNvR~AP~~h~~Ll~L~~~~i~~~~ 286 (389)
T TIGR02399 262 FNFRDAPKSHQELLNLCKKHIKPED 286 (389)
T ss_pred CccccCCccHHHHHHHHHhcCCHHH
Confidence 467778888888877766554
No 126
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=29.95 E-value=24 Score=25.03 Aligned_cols=20 Identities=35% Similarity=0.904 Sum_probs=16.0
Q ss_pred cccccccCcccc-----cccchhhh
Q 018911 12 SLSCVRCGKPAH-----LQCPKCME 31 (349)
Q Consensus 12 ~~~c~~c~~~~~-----l~cp~c~~ 31 (349)
..+|..||+..+ .+||.|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~Cga 29 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGA 29 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCC
Confidence 457999999874 88999973
No 127
>PRK00420 hypothetical protein; Validated
Probab=29.88 E-value=19 Score=29.58 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=18.6
Q ss_pred cccccccccccCc------ccccccchhhhcC
Q 018911 8 AETTSLSCVRCGK------PAHLQCPKCMELK 33 (349)
Q Consensus 8 ~~~~~~~c~~c~~------~~~l~cp~c~~~~ 33 (349)
+.|.+..|..||- ....+||.|.+.-
T Consensus 19 a~ml~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 19 AKMLSKHCPVCGLPLFELKDGEVVCPVHGKVY 50 (112)
T ss_pred HHHccCCCCCCCCcceecCCCceECCCCCCee
Confidence 4556678998985 4448899998743
No 128
>PRK12495 hypothetical protein; Provisional
Probab=29.77 E-value=23 Score=32.50 Aligned_cols=27 Identities=33% Similarity=0.725 Sum_probs=20.5
Q ss_pred cccccccccccCcccc-----cccchhhhcCC
Q 018911 8 AETTSLSCVRCGKPAH-----LQCPKCMELKL 34 (349)
Q Consensus 8 ~~~~~~~c~~c~~~~~-----l~cp~c~~~~~ 34 (349)
+.|....|..||.++. ..||.|.+..-
T Consensus 38 atmsa~hC~~CG~PIpa~pG~~~Cp~CQ~~~~ 69 (226)
T PRK12495 38 ATMTNAHCDECGDPIFRHDGQEFCPTCQQPVT 69 (226)
T ss_pred cccchhhcccccCcccCCCCeeECCCCCCccc
Confidence 4556678999999765 56999998744
No 129
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=29.52 E-value=17 Score=25.41 Aligned_cols=22 Identities=27% Similarity=0.954 Sum_probs=15.6
Q ss_pred ccccccCc---------ccccccchhhhcCC
Q 018911 13 LSCVRCGK---------PAHLQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~---------~~~l~cp~c~~~~~ 34 (349)
-.|..|+| ....+||.|..++.
T Consensus 5 iRC~~CnklLa~~g~~~~leIKCpRC~tiN~ 35 (51)
T PF10122_consen 5 IRCGHCNKLLAKAGEVIELEIKCPRCKTINH 35 (51)
T ss_pred eeccchhHHHhhhcCccEEEEECCCCCccce
Confidence 35877876 12278999998775
No 130
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=28.26 E-value=21 Score=23.94 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=22.6
Q ss_pred cccccCcccc---cccchhhhcCCCCCCccccChhhhhhchhHHHHHh
Q 018911 14 SCVRCGKPAH---LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58 (349)
Q Consensus 14 ~c~~c~~~~~---l~cp~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h 58 (349)
.|.+|+++.. .+|-.|.. |.--++||... .| ..|
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d--------~dLC~~C~~~~--~H-~~H 38 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPD--------YDLCESCEAKG--VH-PEH 38 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCC--------ccchHHhhCcC--CC-CCC
Confidence 4888988766 56777653 34457888876 55 444
No 131
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=28.11 E-value=30 Score=29.03 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=20.4
Q ss_pred cccccccCcccccccch--hhhcCCCCCCccccChhhhhhc
Q 018911 12 SLSCVRCGKPAHLQCPK--CMELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 12 ~~~c~~c~~~~~l~cp~--c~~~~~~~~~~~fc~~~cf~~~ 50 (349)
...|..||..+---.-+ -.+-|. .-+|||..|.|..
T Consensus 4 ~e~CsFcG~kIyPG~G~~fVR~DGk---vf~FcssKC~k~f 41 (131)
T PRK14891 4 TRTCDYTGEEIEPGTGTMFVRKDGT---VLHFVDSKCEKNY 41 (131)
T ss_pred eeeecCcCCcccCCCCcEEEecCCC---EEEEecHHHHHHH
Confidence 46798898865411110 011121 4679999997654
No 132
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=27.77 E-value=20 Score=39.09 Aligned_cols=37 Identities=24% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCccccccccccccCcccc-cccchhhhcCCCCCCccccCh
Q 018911 5 SDAAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCTQ 44 (349)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~~ 44 (349)
....+...|.|..||+.+- ..||.|-..-. .-|+|.+
T Consensus 648 ~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~---~~~~Cp~ 685 (900)
T PF03833_consen 648 TIEVEIGRRRCPKCGKETFYNRCPECGSHTE---PVYVCPD 685 (900)
T ss_dssp -----------------------------------------
T ss_pred eeEEeeecccCcccCCcchhhcCcccCCccc---cceeccc
Confidence 3455666788999999876 88998876433 4677753
No 133
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.74 E-value=29 Score=29.08 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=15.7
Q ss_pred ccccccccCc------ccccccchhhhc
Q 018911 11 TSLSCVRCGK------PAHLQCPKCMEL 32 (349)
Q Consensus 11 ~~~~c~~c~~------~~~l~cp~c~~~ 32 (349)
.+|+|..||+ .-...||.|-..
T Consensus 8 tKr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred ccccCCCcCccccccCCCCccCCCcCCc
Confidence 3688999987 222778888765
No 134
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=27.49 E-value=32 Score=21.68 Aligned_cols=17 Identities=35% Similarity=1.118 Sum_probs=10.9
Q ss_pred cccccCcccc------cccchhh
Q 018911 14 SCVRCGKPAH------LQCPKCM 30 (349)
Q Consensus 14 ~c~~c~~~~~------l~cp~c~ 30 (349)
.|..||.+.. ++||.|-
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG 24 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECG 24 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS
T ss_pred CCCcCCCeeEcCCCCcEECCcCC
Confidence 4777887544 6787764
No 135
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=27.22 E-value=28 Score=22.21 Aligned_cols=8 Identities=38% Similarity=1.032 Sum_probs=5.9
Q ss_pred cccchhhh
Q 018911 24 LQCPKCME 31 (349)
Q Consensus 24 l~cp~c~~ 31 (349)
++||.|..
T Consensus 26 v~C~~C~~ 33 (38)
T TIGR02098 26 VRCGKCGH 33 (38)
T ss_pred EECCCCCC
Confidence 67888864
No 136
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=27.08 E-value=29 Score=20.42 Aligned_cols=7 Identities=43% Similarity=1.412 Sum_probs=5.1
Q ss_pred cccchhh
Q 018911 24 LQCPKCM 30 (349)
Q Consensus 24 l~cp~c~ 30 (349)
..||.|-
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 7788774
No 137
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=26.05 E-value=95 Score=21.94 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHH---HH-hccCC-CcHHHHHHHHH
Q 018911 150 RMRETCRIAREVLDAA---AR-MIRPG-VTTDEIDRVVH 183 (349)
Q Consensus 150 ~~R~Aa~ia~~al~~~---~~-~i~pG-~Te~Ei~~~v~ 183 (349)
.+.+|++|+.++++.- .+ .++-| +|+.|++.++.
T Consensus 10 GYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~ 48 (55)
T PF10415_consen 10 GYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLD 48 (55)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTS
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcC
Confidence 5778889998888652 22 23456 78999988765
No 138
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=25.76 E-value=19 Score=25.51 Aligned_cols=22 Identities=36% Similarity=1.044 Sum_probs=15.6
Q ss_pred ccccccCc---ccc------cccchhhhcCC
Q 018911 13 LSCVRCGK---PAH------LQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~---~~~------l~cp~c~~~~~ 34 (349)
-.|..|+| .+. ..||.|+.++-
T Consensus 5 iRC~~CnKlLa~a~~~~yle~KCPrCK~vN~ 35 (60)
T COG4416 5 IRCAKCNKLLAEAEGQAYLEKKCPRCKEVNE 35 (60)
T ss_pred eehHHHhHHHHhcccceeeeecCCccceeee
Confidence 45888988 222 67999998764
No 139
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.61 E-value=1.3e+02 Score=28.44 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=35.5
Q ss_pred cCCCCCeEEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHH
Q 018911 222 KLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264 (349)
Q Consensus 222 ~L~~GDiV~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~ 264 (349)
.+.+| +|++|-.++++.-..|++-|=++|..+++..+-|+.+
T Consensus 201 ~~~~G-Pv~fDPA~y~GDrE~Dlam~elFggfp~efy~gY~sv 242 (286)
T COG3001 201 FGKDG-PVIFDPACYWGDRECDLAMLELFGGFPPEFYDGYQSV 242 (286)
T ss_pred ccCCC-CeeeccccccCCcccceehhhhhcCCcHHHHHhhhcc
Confidence 46677 9999999999999999999999988888877766543
No 140
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=25.45 E-value=32 Score=22.45 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=21.0
Q ss_pred ccccCcccccccchhhhcCCCCCCccccChhhhhhc
Q 018911 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKAS 50 (349)
Q Consensus 15 c~~c~~~~~l~cp~c~~~~~~~~~~~fc~~~cf~~~ 50 (349)
|.-||+++.- =|.=.|.+-. .-|||...|.++.
T Consensus 1 Cd~CG~~I~~-eP~~~k~~~~--~y~fCC~tC~~~f 33 (37)
T PF08394_consen 1 CDYCGGEITG-EPIVVKIGNK--VYYFCCPTCLSQF 33 (37)
T ss_pred CCccCCcccC-CEEEEEECCe--EEEEECHHHHHHH
Confidence 5557776642 2555555543 6789999997653
No 141
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=24.53 E-value=1.4e+02 Score=23.85 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=48.5
Q ss_pred EEEeeeceeCcEEeceeeeEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHHHcCCc
Q 018911 229 VNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGV-------RFREIGEVINRHATMSGFS 298 (349)
Q Consensus 229 V~iD~g~~~~GY~~D~~RT~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~-------~~~eI~~~i~~~~~~~G~~ 298 (349)
..+|+.+...+|- .+++.+.+-. ..+.++.++.+.+.....+..+--|+ +-.+..+.|.+.+++.||-
T Consensus 23 ~V~DV~veHp~YG-~i~~~L~i~s-r~Dv~~Fi~~l~~~~~~~Ls~LT~GvH~HtI~a~~~e~l~~I~~~L~~~G~L 97 (98)
T PF02829_consen 23 RVLDVIVEHPVYG-EITGNLNISS-RRDVDKFIEKLEKSKAKPLSSLTGGVHYHTIEAPDEEDLDKIEEALKKKGFL 97 (98)
T ss_dssp EEEEEEEEETTTE-EEEEEEEE-S-HHHHHHHHHHHHH--S--STTGGGGEEEEEEEESSHHHHHHHHHHHHHTT-B
T ss_pred EEEEEEEeCCCCc-EEEEEEecCC-HHHHHHHHHHHhccCCcchHHhcCCEeeEEEEECCHHHHHHHHHHHHHCCCc
Confidence 4458999999998 9999999864 45666677777776666777776663 4578889999999999983
No 142
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=23.72 E-value=38 Score=27.64 Aligned_cols=22 Identities=32% Similarity=0.768 Sum_probs=15.3
Q ss_pred ccccccCcccc-----cccchhhhcCC
Q 018911 13 LSCVRCGKPAH-----LQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~~~~-----l~cp~c~~~~~ 34 (349)
-.|..||+... +.||.|...++
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 71 AWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EEcccCCCEEecCCcCccCcCCCCCCc
Confidence 45888987433 56999986544
No 143
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=23.70 E-value=32 Score=24.47 Aligned_cols=11 Identities=55% Similarity=1.141 Sum_probs=8.9
Q ss_pred cccchhhhcCC
Q 018911 24 LQCPKCMELKL 34 (349)
Q Consensus 24 l~cp~c~~~~~ 34 (349)
|-||.|+++-+
T Consensus 29 lyCpKCK~Etl 39 (55)
T PF14205_consen 29 LYCPKCKQETL 39 (55)
T ss_pred ccCCCCCceEE
Confidence 77999988765
No 144
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.35 E-value=37 Score=21.86 Aligned_cols=8 Identities=50% Similarity=1.414 Sum_probs=6.0
Q ss_pred cccchhhh
Q 018911 24 LQCPKCME 31 (349)
Q Consensus 24 l~cp~c~~ 31 (349)
++||.|..
T Consensus 26 vrC~~C~~ 33 (37)
T PF13719_consen 26 VRCPKCGH 33 (37)
T ss_pred EECCCCCc
Confidence 78888863
No 145
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=22.98 E-value=56 Score=24.88 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCC
Q 018911 158 AREVLDAAARMIRPGVTTDEIDRVVHEATITAGG 191 (349)
Q Consensus 158 a~~al~~~~~~i~pG~Te~Ei~~~v~~~~~~~G~ 191 (349)
+.++...+.+..+.++|+.||..++...+.+.|.
T Consensus 41 ~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~ 74 (90)
T PF03477_consen 41 ASEVENKLYDSGKEEISTEEIQDIVENALMEEGF 74 (90)
T ss_dssp HHHHHTC-ST----TEEHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCCh
Confidence 3333333333333399999999999999997663
No 146
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.67 E-value=24 Score=28.74 Aligned_cols=23 Identities=26% Similarity=0.813 Sum_probs=14.5
Q ss_pred cccccccCcccc-----cccchhhhcCC
Q 018911 12 SLSCVRCGKPAH-----LQCPKCMELKL 34 (349)
Q Consensus 12 ~~~c~~c~~~~~-----l~cp~c~~~~~ 34 (349)
...|..||+.-. ..||.|....+
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 346989998554 67999987653
No 147
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.28 E-value=43 Score=27.41 Aligned_cols=22 Identities=32% Similarity=0.895 Sum_probs=15.8
Q ss_pred ccccccCcccc-----cccchhhhcCC
Q 018911 13 LSCVRCGKPAH-----LQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~~~~-----l~cp~c~~~~~ 34 (349)
..|..|++... ..||.|....+
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 71 CECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EEcccCCCEEecCCcCccCcCCcCCCc
Confidence 45888998543 56999987553
No 148
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=22.23 E-value=60 Score=23.22 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=19.4
Q ss_pred ccccccCcccc-cccchhhhcCCCCCCccc
Q 018911 13 LSCVRCGKPAH-LQCPKCMELKLPREGAAF 41 (349)
Q Consensus 13 ~~c~~c~~~~~-l~cp~c~~~~~~~~~~~f 41 (349)
++|..||.-+- .+||.|-..-....+.-|
T Consensus 6 r~C~~CgvYTLk~~CP~CG~~t~~~~P~rf 35 (56)
T PRK13130 6 RKCPKCGVYTLKEICPVCGGKTKNPHPPRF 35 (56)
T ss_pred eECCCCCCEEccccCcCCCCCCCCCCCCCC
Confidence 67999998665 779999766443333334
No 149
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=22.09 E-value=2.2e+02 Score=21.43 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=30.3
Q ss_pred ccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEE
Q 018911 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (349)
Q Consensus 169 i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~i 231 (349)
++.|.|-.|++..+|..+.+.=.+ . ..+ .| ....+-+.+|++||+|.|
T Consensus 27 l~~GaTv~D~A~~IHtdi~~~f~~---------A-i~~--k~---~~~vg~~~~L~dgDvV~I 74 (76)
T cd01669 27 LPKGSTARDLAYAIHTDIGDGFLH---------A-IDA--RT---GRRVGEDYELKHRDVIKI 74 (76)
T ss_pred ECCCCCHHHHHHHHHHHHHhccee---------e-EEe--eC---CEEeCCCcEecCCCEEEE
Confidence 456889999999999777643100 0 011 11 223345678999999987
No 150
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=22.09 E-value=2.4e+02 Score=28.38 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=21.5
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHH
Q 018911 160 EVLDAAARMIRPGVTTDEIDRVVHEATIT 188 (349)
Q Consensus 160 ~al~~~~~~i~pG~Te~Ei~~~v~~~~~~ 188 (349)
.+-.+++++++||+.-.++..+.++.+++
T Consensus 310 da~navm~a~KpGv~W~Dmh~La~kvlle 338 (492)
T KOG2737|consen 310 DASNAVMEAMKPGVWWVDMHKLAEKVLLE 338 (492)
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 34455778899999998888777666654
No 151
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=22.07 E-value=45 Score=34.33 Aligned_cols=69 Identities=23% Similarity=0.255 Sum_probs=46.3
Q ss_pred CCeEEEeeeceeCcEEeceeeeEEecC--------CCHHHHH--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Q 018911 226 GDIVNIDVTVYYKGVHGDLNETYFVGN--------ADEASRQ--LVQCTYECLEKAISIVKPGVRFREIGEVINRHATM 294 (349)
Q Consensus 226 GDiV~iD~g~~~~GY~~D~~RT~~vG~--------~~~e~~~--l~~~~~ea~~~ai~~lkPG~~~~eI~~~i~~~~~~ 294 (349)
+|.-.+-+++.|.||++|+++-++.|- .-+...+ +-...-+.+-..++.++||.--.++-.+-++++.+
T Consensus 584 nD~taLvvS~aYkG~WsDLsELWFLGMQt~~G~lPLvPWLs~~AL~S~W~e~ivk~L~kVk~~tl~~nv~sAYe~~L~q 662 (698)
T KOG2611|consen 584 NDPTALVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVKTLKKVKIGTLPANVKSAYEDFLSQ 662 (698)
T ss_pred CCCceEEeehhhhhhhhhHHHHHHHhHHHHcCcccchhhhcHHHHhcccHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 677777799999999999999999871 1222221 11222344556678889998777776666655543
No 152
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.07 E-value=45 Score=21.33 Aligned_cols=19 Identities=32% Similarity=0.908 Sum_probs=13.3
Q ss_pred ccccccCc----------ccccccchhhh
Q 018911 13 LSCVRCGK----------PAHLQCPKCME 31 (349)
Q Consensus 13 ~~c~~c~~----------~~~l~cp~c~~ 31 (349)
..|..||+ .....||.|..
T Consensus 6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 6 YRCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 45888887 22367998886
No 153
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=22.04 E-value=1.7e+02 Score=25.73 Aligned_cols=53 Identities=25% Similarity=0.326 Sum_probs=37.7
Q ss_pred CCccCCCCCeEEEeeece-eCcEEeceee-----eEEecCCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 018911 219 DSRKLEDGDIVNIDVTVY-YKGVHGDLNE-----TYFVGNADEASRQLVQCTYECLEKAISIVKPGVR 280 (349)
Q Consensus 219 ~~r~L~~GDiV~iD~g~~-~~GY~~D~~R-----T~~vG~~~~e~~~l~~~~~ea~~~ai~~lkPG~~ 280 (349)
+....+.||.|.++..+. .+|-.-|-++ +|.+|. ..+..+++.++..+++|-+
T Consensus 82 ~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~---------~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 82 EGTTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQ---------QDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CCCcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCC---------cchhHHHHHHHcCCCCCCE
Confidence 334568999999998777 4675555543 667764 1356778888999999964
No 154
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=21.92 E-value=1.1e+02 Score=21.72 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=30.6
Q ss_pred ccCCCcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEE
Q 018911 169 IRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNI 231 (349)
Q Consensus 169 i~pG~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~i 231 (349)
+..|.|-.|++..++..+.++- +..-+|. ....-+++|++||.|.|
T Consensus 13 ~~~g~T~~d~A~~I~~~l~~~~--------------~~A~Vng---~~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 13 LPEGSTVLDVAYSIHSSLAKRA--------------VAAKVNG---QLVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EETTBBHHHHHHHHSHHHHHCE--------------EEEEETT---EEEETTSBB-SSEEEEE
T ss_pred CCCCCCHHHHHHHHCHHHHhhe--------------eEEEEcC---EECCCCCCcCCCCEEEE
Confidence 5679999999999999988752 1111232 11234578999999876
No 155
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.76 E-value=40 Score=22.64 Aligned_cols=33 Identities=24% Similarity=0.745 Sum_probs=18.0
Q ss_pred cccccccccCcccc--cccchhhhcCCCCCCccccChhhhh
Q 018911 10 TTSLSCVRCGKPAH--LQCPKCMELKLPREGAAFCTQDCFK 48 (349)
Q Consensus 10 ~~~~~c~~c~~~~~--l~cp~c~~~~~~~~~~~fc~~~cf~ 48 (349)
-++..|..||++-+ ..=-.|-. ..-|||+-|-+
T Consensus 6 lp~K~C~~C~rpf~WRKKW~~~Wd------~VkYCS~rCR~ 40 (42)
T PF10013_consen 6 LPSKICPVCGRPFTWRKKWARCWD------EVKYCSDRCRR 40 (42)
T ss_pred CCCCcCcccCCcchHHHHHHHhch------hhccHHHHhcc
Confidence 34566777777665 11112222 23478888843
No 156
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=21.58 E-value=1.4e+02 Score=17.05 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=15.3
Q ss_pred CCCCCeEEEeeeceeCcEEecee
Q 018911 223 LEDGDIVNIDVTVYYKGVHGDLN 245 (349)
Q Consensus 223 L~~GDiV~iD~g~~~~GY~~D~~ 245 (349)
+++||.|.|- ...+.|..+-+.
T Consensus 2 ~~~G~~V~I~-~G~~~g~~g~i~ 23 (28)
T smart00739 2 FEVGDTVRVI-AGPFKGKVGKVL 23 (28)
T ss_pred CCCCCEEEEe-ECCCCCcEEEEE
Confidence 6789999994 455777665543
No 157
>PRK05423 hypothetical protein; Provisional
Probab=20.95 E-value=1.4e+02 Score=23.80 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=22.0
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHH
Q 018911 160 EVLDAAARMIRPGVTTDEIDRVVHEAT 186 (349)
Q Consensus 160 ~al~~~~~~i~pG~Te~Ei~~~v~~~~ 186 (349)
.-|+...+.|+||||..||.+++...-
T Consensus 43 lLLdNL~~YIk~~Ms~e~i~~II~nMr 69 (104)
T PRK05423 43 LLLDNLSDYIKPGMSIEEIQGIIANMK 69 (104)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 356778889999999999998887543
No 158
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=20.91 E-value=44 Score=37.07 Aligned_cols=34 Identities=32% Similarity=0.661 Sum_probs=26.3
Q ss_pred ccccccccccccCcccc-cccchhhhcCCCCCCccccC
Q 018911 7 AAETTSLSCVRCGKPAH-LQCPKCMELKLPREGAAFCT 43 (349)
Q Consensus 7 ~~~~~~~~c~~c~~~~~-l~cp~c~~~~~~~~~~~fc~ 43 (349)
..+...|+|..||+.+- ..||.|-..-. ..++|.
T Consensus 620 ~vev~~RKCPkCG~yTlk~rCP~CG~~Te---~~~pc~ 654 (1095)
T TIGR00354 620 EVEIAIRKCPQCGKESFWLKCPVCGELTE---QLYYGK 654 (1095)
T ss_pred EEEEEEEECCCCCcccccccCCCCCCccc---ccccee
Confidence 34556689999999877 89999987644 478893
No 159
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=20.81 E-value=3.9e+02 Score=21.03 Aligned_cols=36 Identities=17% Similarity=0.481 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 018911 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA 185 (349)
Q Consensus 149 e~~R~Aa~ia~~al~~~~~~i~pG~Te~Ei~~~v~~~ 185 (349)
..+|.-.+-.. -|+.+.+.|+|+||..||.+++...
T Consensus 26 kKIRDNqKRV~-LLdNL~~YI~~~Ms~edi~~II~nM 61 (95)
T PF04363_consen 26 KKIRDNQKRVL-LLDNLSDYIKPDMSIEDIRAIIENM 61 (95)
T ss_pred HHHhhhHHHHH-HHHHHHHHccCCCCHHHHHHHHHHH
Confidence 34555554443 3788899999999999999887754
No 160
>PRK07440 hypothetical protein; Provisional
Probab=20.56 E-value=1.6e+02 Score=21.67 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=22.5
Q ss_pred ceeeecCCCcc-cccCCCCccCCCCCeEEEeeec
Q 018911 203 KSCCTSVNEVI-CHGIPDSRKLEDGDIVNIDVTV 235 (349)
Q Consensus 203 ~~v~~g~n~~~-~H~~p~~r~L~~GDiV~iD~g~ 235 (349)
..++.-.|..+ +...+.+..|++||.|-| +..
T Consensus 34 ~~vav~~N~~iv~r~~w~~~~L~~gD~IEI-v~~ 66 (70)
T PRK07440 34 RLVAVEYNGEILHRQFWEQTQVQPGDRLEI-VTI 66 (70)
T ss_pred CeEEEEECCEEeCHHHcCceecCCCCEEEE-EEE
Confidence 35667777544 445667889999999887 443
No 161
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.47 E-value=49 Score=21.89 Aligned_cols=22 Identities=27% Similarity=0.881 Sum_probs=15.2
Q ss_pred ccccccCc----------ccccccchhhhcCC
Q 018911 13 LSCVRCGK----------PAHLQCPKCMELKL 34 (349)
Q Consensus 13 ~~c~~c~~----------~~~l~cp~c~~~~~ 34 (349)
..|..||. .....||.|....+
T Consensus 6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~~~ 37 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSISEDDPVPCPECGSTEV 37 (42)
T ss_pred EEeCCCCCEEEEEEEcCCCCCCcCCCCCCCce
Confidence 46888884 23488999987544
No 162
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=20.45 E-value=49 Score=18.19 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=6.7
Q ss_pred hhchhHHHHHh
Q 018911 48 KASWTSHKSVH 58 (349)
Q Consensus 48 ~~~w~~hk~~h 58 (349)
+.++..|.+.|
T Consensus 13 ~~~l~~H~~~H 23 (23)
T PF00096_consen 13 KSNLKRHMRRH 23 (23)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHC
Confidence 35566776655
No 163
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=20.29 E-value=1.8e+02 Score=29.69 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCCCccCCceeeecCCCcccccCCCCccCCCCCeEEEeeeceeCcE
Q 018911 173 VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGV 240 (349)
Q Consensus 173 ~Te~Ei~~~v~~~~~~~G~~ps~l~y~~fp~~v~~g~n~~~~H~~p~~r~L~~GDiV~iD~g~~~~GY 240 (349)
+|+.||+..+......+.-+ .|.++.++.||.|.||+.+..+|=
T Consensus 132 v~d~dvd~~L~~l~~~~a~~------------------------~~~e~~a~~gD~v~IDf~g~iDg~ 175 (441)
T COG0544 132 VTDEDVDEELEKLRKRFATL------------------------EPVEGAAENGDRVTIDFEGSVDGE 175 (441)
T ss_pred cCHHHHHHHHHHHHHhcCcc------------------------cccccccccCCEEEEEEEEEEcCe
Confidence 57778887777555443221 122222899999999998876654
Done!