RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018911
(349 letters)
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 384 bits (989), Expect = e-133
Identities = 108/280 (38%), Positives = 155/280 (55%), Gaps = 19/280 (6%)
Query: 24 LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCI 83
+ F+ H +K LS + W Y
Sbjct: 1 MHHHHHHSSGRE--------NLYFQGEKEDHLKTIVKKHLSPE---NFDPTNRKYWVY-- 47
Query: 84 KKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK 143
+F +TG +RP+P+S VP++IE PD+A+ P+ E + + +
Sbjct: 48 ---DDHLKNFVNFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVN 104
Query: 144 TPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPK 203
++I+R+RE C + R+ LD A ++ PGVTTDEIDR VHE I YPS LNY+ FPK
Sbjct: 105 NEEEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPK 164
Query: 204 SCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA---SRQL 260
SCCTSVNE++CHGIPD R L+ GDI+NID++V+YKGVH DLNETYFVG+ ++ ++L
Sbjct: 165 SCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKEL 224
Query: 261 VQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
V+ Y L +AI KPG+ ++ IG +I+ + + FSVV
Sbjct: 225 VETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVV 264
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 359 bits (923), Expect = e-124
Identities = 122/254 (48%), Positives = 155/254 (61%), Gaps = 25/254 (9%)
Query: 50 SWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPIS 108
+ H H + + +TG LRP YP+
Sbjct: 2 GSSHHHHHHSSGL----------------------VPRGSHMLEDPYRYTGKLRPHYPLM 39
Query: 109 SKLTVPAYIELPDWALD--GTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAA 166
VP+YI+ PD+A G + E +++ + + IE MR CR+AREVLD AA
Sbjct: 40 PTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAA 99
Query: 167 RMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDG 226
MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEVICHGIPD R L++G
Sbjct: 100 GMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEG 159
Query: 227 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGE 286
DIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI VKPGVR+RE+G
Sbjct: 160 DIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGN 219
Query: 287 VINRHATMSGFSVV 300
+I +HA +GFSVV
Sbjct: 220 IIQKHAQANGFSVV 233
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 349 bits (897), Expect = e-121
Identities = 95/202 (47%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 99 TGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIA 158
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSE----PWVQTPEVIEKMRVAGRIA 57
Query: 159 REVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 218
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIP
Sbjct: 58 AGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIP 117
Query: 219 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPG 278
DS + DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 118 DSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPG 177
Query: 279 VRFREIGEVINRHATMSGFSVV 300
IG VI +A G++VV
Sbjct: 178 RALSVIGRVIESYANRFGYNVV 199
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 275 bits (707), Expect = 2e-92
Identities = 65/161 (40%), Positives = 99/161 (61%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
++I T +MR ++A E LD ++P VTT+ ++ + H + P+PLNY
Sbjct: 6 IKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYK 65
Query: 200 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
FPKS CTS+N V+CHGIP+ + L++GDIVNIDVTV G +GD + Y+VG+ ++
Sbjct: 66 GFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKR 125
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
L+Q TY+ + K I +V+PG + +IG I +A +SVV
Sbjct: 126 LIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVV 166
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 270 bits (692), Expect = 3e-90
Identities = 74/163 (45%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA-GGYPSPLNY 198
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + + L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 257
H +PKS C S+NEV+CHGIP D++ L+DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 258 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L A+ +VKPG+ REIG I + GFSVV
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVV 164
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 251 bits (644), Expect = 5e-83
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+ +KT ++++ ++E I +V + +PG+TT E+D + E G +P++
Sbjct: 1 MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDE 60
Query: 200 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-ADEASR 258
FP C SVNE + HGIP R + +GD+VNIDV+ G + D ++ VG D +
Sbjct: 61 NFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQ 120
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
++ E AI+ VKPG + IG+ ++ A + V+
Sbjct: 121 KVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVI 162
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 232 bits (594), Expect = 2e-75
Identities = 48/161 (29%), Positives = 84/161 (52%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+ +K+P +IE M E+ + +V I+PG+T+ +I+ V + + GG + + Y
Sbjct: 2 ITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYE 61
Query: 200 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
+ + C S+N+ ICHG P + L+DGD++ +D+ V KG D +Y VG + +
Sbjct: 62 GYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDR 121
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
L++ T + L I + G R +IG I + G+ VV
Sbjct: 122 LMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVV 162
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 231 bits (591), Expect = 6e-75
Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 1/171 (0%)
Query: 131 EPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG 190
+ + H++ IKTP +IE+M++ + L ++I PG T +++ +V E
Sbjct: 5 KIHHHHHHMIRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLR 64
Query: 191 GYPSPLNYHFFPKSCCTSVNEVICHGIPDSRK-LEDGDIVNIDVTVYYKGVHGDLNETYF 249
P+ Y + + C SVNE + HG+P K ++GDIV++DV Y+G++GD TY
Sbjct: 65 VKPAFKGYGGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYI 124
Query: 250 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
VG DE ++LV+ T E LEKAI ++KPG+R ++ I GF+V+
Sbjct: 125 VGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVI 175
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 220 bits (562), Expect = 2e-70
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
VE +TP +++ M I L A + GV+T E+D+V AG PS L YH
Sbjct: 32 VEQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYH 91
Query: 200 FFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
FP S C+SVN+ + HGIP + L DGD+V+ID G HGD T+ VG +
Sbjct: 92 GFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDE 151
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHA------TMSGFSVV 300
L + T +E I+ + PG R ++ I F +V
Sbjct: 152 ALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIV 199
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 161 bits (410), Expect = 2e-47
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 14/156 (8%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
E++ + IA++V + A ++ RPG+ E+ + + + GG P+ FP
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNL 54
Query: 208 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
S+NE+ H P D+ L++GD + IDV V+ G D T VG ++ +L++
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAA 111
Query: 265 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
E L AIS+ + GV +E+G+ I GF +
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEIRKRGFKPI 147
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 163 bits (413), Expect = 6e-47
Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 12/189 (6%)
Query: 124 LDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVH 183
+ D Q I + + + IA VL + GV+ +
Sbjct: 1 MGHHHHHHSGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGD 60
Query: 184 EATITAGG---YPSPLNYHFFPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVY 236
+ G SVN +CH P L++GD+V ID+ V+
Sbjct: 61 AMIMEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVH 120
Query: 237 YKGVHGDLNETYFVGNADEA-----SRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH 291
G ++ T+ V A +++ + C E A+ +VKPG + ++ E N+
Sbjct: 121 VDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKV 180
Query: 292 ATMSGFSVV 300
A + +
Sbjct: 181 AHSFNCTPI 189
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 143 bits (361), Expect = 6e-39
Identities = 32/164 (19%), Positives = 52/164 (31%), Gaps = 8/164 (4%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
++ + + RE R+V I+PG+T EI + + +
Sbjct: 158 LDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGL 217
Query: 200 FFPKSCCTSVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP S+N H P D+ L+ DI ID + G D T
Sbjct: 218 AFP--TGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFN---PK 272
Query: 257 SRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
L++ + I VR ++GE I +
Sbjct: 273 YDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEID 316
Score = 36.1 bits (83), Expect = 0.014
Identities = 13/124 (10%), Positives = 39/124 (31%), Gaps = 24/124 (19%)
Query: 155 CRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVIC 214
+ ++ + + V ++ + E + Y + +
Sbjct: 277 LKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQ------VKPIRNLNG 330
Query: 215 HGI----------------PDSRKLEDGDIVNID--VTVYYKGVHGDLNETYFVGNADEA 256
H I ++ ++E+G++ I+ + VH D+ ++++ N D
Sbjct: 331 HSIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVG 390
Query: 257 SRQL 260
+
Sbjct: 391 HVPI 394
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 138 bits (349), Expect = 4e-38
Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 10/175 (5%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
+ D ++ R R ++RPG+T EI R + ++T T
Sbjct: 38 IENFTESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNGI 97
Query: 199 HFFPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD 254
FP S+N H L++ D++ ID + G D T
Sbjct: 98 G-FP--AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFKENL 154
Query: 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVMHNVWFAIV 309
E L+ E E I + VR +IG IN + + +
Sbjct: 155 E---PLLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIRPI 206
Score = 36.3 bits (84), Expect = 0.012
Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 22/92 (23%)
Query: 158 AREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI 217
ARE + + + V +I R ++E + + P ++++ H I
Sbjct: 161 AREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIRP------ISDLHGHSI 214
Query: 218 ----------------PDSRKLEDGDIVNIDV 233
D+ +++ ++
Sbjct: 215 SQFRIHGGISIPAVNNRDTTRIKGDSFYAVET 246
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 104 bits (262), Expect = 2e-25
Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 2/188 (1%)
Query: 111 LTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIR 170
+T+ ZL AL GT V+ + IK+ ++ + +RZ RI+ A A I
Sbjct: 127 VTLBHRRZLZK-ALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAIS 185
Query: 171 PGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIV 229
GV E+ +A + + + +N H R +Z GDI+
Sbjct: 186 AGVPEYEVAIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDGAHNPVTBRVVZRGDIL 245
Query: 230 NIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVIN 289
+++ G + L T F+ B+AS Z+ Z + + ++KPG R ++I +N
Sbjct: 246 SLNCFPMIFGYYTALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELN 305
Query: 290 RHATMSGF 297
Sbjct: 306 BMYRZWDL 313
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 100 bits (251), Expect = 7e-24
Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 5/168 (2%)
Query: 135 DLQHVVE----IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG 190
D+ IK+ ++ +R RIA A + V E+ +A + A
Sbjct: 146 DVAAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAI 205
Query: 191 GYPSPLNYHF-FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYF 249
+ +N H +RK+ GDI++++ G + L T F
Sbjct: 206 ADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLF 265
Query: 250 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF 297
+ + + +L Q E E + ++KPG R +I +N
Sbjct: 266 LDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDV 313
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 96.1 bits (240), Expect = 1e-22
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 8/179 (4%)
Query: 107 ISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAA 166
I S L EL + + + ++ + IK+ +I+ + + C IA + + AA
Sbjct: 93 IESSLPYGFIEELKK-KANIKEFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAI 151
Query: 167 RMIRPGVTTDEIDRVVHEATITAGG-YPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLED 225
I G E+ V G P+ F + + HG+ +++E
Sbjct: 152 EEITEGKKEREVAAKVEYLMKMNGAEKPA------FDTIIASGYRSALPHGVASDKRIER 205
Query: 226 GDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREI 284
GD+V ID+ Y+ + D+ T VG+ +E +++ + E +KA+ KPG+ +E+
Sbjct: 206 GDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKEL 264
Score = 39.1 bits (92), Expect = 0.001
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
NSD+ + + +P+ E+ +E I E A +PG+T E+D + I GY
Sbjct: 221 NSDITRTIVVGSPN--EKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNI-IAEYGY 277
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 95.4 bits (238), Expect = 3e-22
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
Query: 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYH 199
IK ++++ M RIA +V + G+ E+ + E I +
Sbjct: 130 MIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKI-ELLIRELSDGIA----- 183
Query: 200 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
F + N H P RK+ GDI+ +D +KG D+ T +G DE +
Sbjct: 184 -FEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVK 242
Query: 260 LVQCTYECLEKAISIVKPGVRFREI 284
+ + + E A V+ G++ +++
Sbjct: 243 IYEVVKDAQESAFKAVREGIKAKDV 267
Score = 37.2 bits (87), Expect = 0.006
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
SD+ + + D ER+ + + ++ ++A + +R G+ ++D E I+ GY
Sbjct: 224 CSDITRTIGLGELD--ERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRARE-VISKAGY 280
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 95.0 bits (237), Expect = 4e-22
Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 8/178 (4%)
Query: 108 SSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAAR 167
++++ + + A + + +++ + +K +IE++++ I+ +
Sbjct: 100 EERVSLSLFRRISS-AFGDRKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQ 158
Query: 168 MIRPGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDG 226
IR G+T EI ++ G + F + + HG + +E G
Sbjct: 159 QIRAGMTEKEIAALLEYTMRKEGAEGVA------FDTIVASGCRSALPHGKASDKVVERG 212
Query: 227 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREI 284
D++ ID Y+ D+ +G + +++ E E+A+ I K GV + +
Sbjct: 213 DVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLL 270
Score = 38.0 bits (89), Expect = 0.004
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 134 SDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
+D+ VV I P + ++E I E + A ++ + GVT +D V E I GY
Sbjct: 228 ADITRVVSIGEPS--DEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREF-IREKGY 283
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 95.0 bits (237), Expect = 4e-22
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 7/145 (4%)
Query: 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYH 199
IKT +I+ ++E +IA + IRPGV+ E+ + G S
Sbjct: 129 LIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS----- 183
Query: 200 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
F + + + HG+ + +E GD V +D YYKG D+ T VG + ++
Sbjct: 184 -FDIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKE 242
Query: 260 LVQCTYECLEKAISIVKPGVRFREI 284
+ E + ++ +K G+ RE
Sbjct: 243 IYNIVLEAQLRGVNGIKAGLTGREA 267
Score = 38.3 bits (90), Expect = 0.003
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
SD+ + + P ++++E I E I+ G+T E D + + IT GY
Sbjct: 224 CSDITRTIAVGEPS--DKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTRDY-ITEKGY 280
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 92.7 bits (231), Expect = 2e-21
Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 7/145 (4%)
Query: 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHF 200
+K +++ + + V + PG T ++ + EA + G
Sbjct: 149 MVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSAV-----A 203
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYK-GVHGDLNETYFVGNADEASRQ 259
F + + H RKL+ GDIV +D+ Y+ G + D TY +G+ Q
Sbjct: 204 FV-IVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQ 262
Query: 260 LVQCTYECLEKAISIVKPGVRFREI 284
A+ V+PGV ++
Sbjct: 263 QYSALQRAQRAAVDAVRPGVTAAQV 287
Score = 37.3 bits (87), Expect = 0.006
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
SD I P + + + AA +RPGVT ++D + + G
Sbjct: 244 YSDSTRTYSIGDPS--PDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAARD-VLADAGL 300
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 82.0 bits (202), Expect = 2e-17
Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 18/162 (11%)
Query: 135 DLQHVVE----IKTPDQIERMRETCRIAREVLDAAARMIRPGV-----TTDEIDRVVHEA 185
D + V E +K PD+I MR + R V ++I ++H
Sbjct: 218 DGEEVTEKARSVKGPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSE 277
Query: 186 TITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDV-TVYYKGVHGDL 244
+ G + + R + +I++ D V G+ D+
Sbjct: 278 NVRRG------GEWIETRLLASGPRSNPWFQECGPRVCQRNEIISFDTDLVGAYGICTDI 331
Query: 245 NETYFVGNADEASRQ--LVQCTYECLEKAISIVKPGVRFREI 284
+ ++++G+ + +Q E + + ++KPGV E+
Sbjct: 332 SRSWWIGDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPEL 373
Score = 43.8 bits (103), Expect = 6e-05
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 133 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
+D+ I M + E + M++PGV E+ H + +
Sbjct: 328 CTDISRSWWIGDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPELSANTH---VLDAKF 384
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 73.5 bits (180), Expect = 1e-14
Identities = 25/210 (11%), Positives = 68/210 (32%), Gaps = 33/210 (15%)
Query: 129 KVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVH----- 183
++ + L V E+K ++ + + + + + +D + + V DE ++ +
Sbjct: 164 VIDISLGLSKVWEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAV--DEELKITNAKLSD 221
Query: 184 --EATITAGGYPSPLNYH-------------------FFPKSCCTSVNEVICHGIPDSRK 222
E I + L+ + P ++ + +
Sbjct: 222 KIENKIDDVKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQ 281
Query: 223 LEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI-SIVKPGVRF 281
L + + Y ++ T+ + + E ++ + +I+KPG
Sbjct: 282 LYGNGCILASCGIRYNNYCSNITRTFLI-DPSEEMANNYDFLLTLQKEIVTNILKPGRTP 340
Query: 282 REIGEVINRHATMSGFSVV---MHNVWFAI 308
+E+ E + + + +V N+ I
Sbjct: 341 KEVYESVIEYIEKTKPELVPNFTKNIGSLI 370
Score = 34.2 bits (78), Expect = 0.057
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 149 ERMRETCRIAREVLDAAAR-MIRPGVTTDEIDRVVHEATITAGGYPSPLNY-HFFPKSCC 206
E M + +++PG T E+ V E I F K+
Sbjct: 313 EEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIE-YIEKTKP----ELVPNFTKNIG 367
Query: 207 TSV------NEVICHGIPDSRKLEDGDIVNIDVTVY 236
+ + + I + D RK++ GD NI
Sbjct: 368 SLIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFN 403
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 72.3 bits (177), Expect = 3e-14
Identities = 22/189 (11%), Positives = 56/189 (29%), Gaps = 18/189 (9%)
Query: 113 VPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVL-----DAAAR 167
+ + + + V+ + L + IK ++ ++ R++ V+ D +
Sbjct: 148 INEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELST 207
Query: 168 MIRPG--VTTDEI----------DRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215
I G +T + + ++ G + + + +
Sbjct: 208 YIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKP 267
Query: 216 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIV 275
+ GD+V + YK ++ TY E ++ +K
Sbjct: 268 SAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQ-QKNYSFLVALQKKLFEYC 326
Query: 276 KPGVRFREI 284
+ G +I
Sbjct: 327 RDGAVIGDI 335
Score = 33.8 bits (77), Expect = 0.086
Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 29/98 (29%)
Query: 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA--GGYPSPLNYHFFPKSCC 206
++ + R G +I + I A F ++
Sbjct: 306 SEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILG-LIRAKRPDLEP-----NFVRN-- 357
Query: 207 TSVNEVICHGI-------------PDSRKLEDGDIVNI 231
+ GI + R L+ G +N+
Sbjct: 358 ------LGAGIGIEFRESSLLVNAKNPRVLQAGMTLNL 389
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 65.9 bits (161), Expect = 5e-12
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 11/163 (6%)
Query: 126 GTPKVEPNSDLQHVVE---IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVV 182
G + P + KT ++ MRE +IA + AA G + EI +
Sbjct: 140 GFELMNPEPVMNFYHYHRAYKTQYELACMREANKIAVQGHKAARDAFFQGKSEFEIQQAY 199
Query: 183 HEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI-PDSRKLEDGDIVNIDVTVYYKGVH 241
AT + + + N I H D ID + G
Sbjct: 200 LLATQHSENDNP------YGNIVALNENCAILHYTHFDRVAPATHRSFLIDAGANFNGYA 253
Query: 242 GDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREI 284
D+ TY E +LV + ++ + PG + E+
Sbjct: 254 ADITRTYDFTGEGE-FAELVATMKQHQIALMNQLAPGKLYGEL 295
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 61.7 bits (150), Expect = 1e-10
Identities = 33/171 (19%), Positives = 70/171 (40%), Gaps = 14/171 (8%)
Query: 124 LDGTPKVEPNS-DLQHVVE----IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEI 178
DG K E N+ L + KT ++E +R T +I+ E + ++ G+ E+
Sbjct: 164 FDGISKFEVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEL 223
Query: 179 DRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH----GIPDSRKLEDGDIVNIDVT 234
+ + + GG + + + C + N + H G P+ R +++GD+ D+
Sbjct: 224 ESLFEHYCYSRGG----MRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMG 279
Query: 235 VYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREI 284
Y D+ ++ G + + + + +KPGV + ++
Sbjct: 280 GEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDM 330
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 61.1 bits (149), Expect = 1e-10
Identities = 25/144 (17%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 201
KT ++IE ++E + ++ + + + + E++ ++G +H F
Sbjct: 171 FKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGI-----KHHAF 225
Query: 202 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQL 260
+ N + H + ++++GD+V +D+ + D++ T+ G +Q+
Sbjct: 226 NTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQI 285
Query: 261 VQCTYECLEKAISIVKPGVRFREI 284
L++ I+KPG++F +
Sbjct: 286 YNIVLNALKETTEIIKPGLKFAAL 309
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 60.4 bits (147), Expect = 2e-10
Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 12/165 (7%)
Query: 126 GTPKVEPNSDLQHVVE---IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVV 182
G V P+ L ++ KT +++ MRE ++A AA + R G + +I+
Sbjct: 140 GFDNVNPDRVLHYLHYQRAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAY 199
Query: 183 HEATITAGGYPSPLNYHFFPKSCCTSVNEVICH-GIPDSRKLEDGDIVNIDVTVYYKGVH 241
A+ + + + I H D+ ++ ID Y G
Sbjct: 200 AAASRQGDNDVP------YTSIVALNEHASILHYMQCDTVAPKESRSFLIDAGANYHGYA 253
Query: 242 GDLNETYFVGN--ADEASRQLVQCTYECLEKAISIVKPGVRFREI 284
D+ TY R L+Q + + +KPGV + +I
Sbjct: 254 ADITRTYAQEGVHNSAMFRDLIQAVDKVTLTLVDSLKPGVAYTDI 298
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 60.3 bits (147), Expect = 2e-10
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 10/172 (5%)
Query: 118 ELPDWALDGTPKVEPNSDLQHVVE----IKTPDQIERMRETCRIAREVLDAAARMIRPGV 173
+L + D + VV K+P++I +R I A RPG+
Sbjct: 147 KLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM 206
Query: 174 TTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDV 233
++ +H G Y + + N I H + ++ DGD+V ID
Sbjct: 207 FEYHLEGEIHHEFNRHGA-----RYPSYNTIVGSGENGCILHYTENECEMRDGDLVLIDA 261
Query: 234 TVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREI 284
YKG GD+ T+ V G +A R++ E LE ++ + +PG E+
Sbjct: 262 GCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 40/232 (17%), Positives = 74/232 (31%), Gaps = 59/232 (25%)
Query: 147 QIERM----RETCRIAREVLDAAARMIRP--GVTTDEIDRVVHEATITAGGYPSPLNYHF 200
Q + M +T + A++V + A + G + +I P L HF
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI----------NNPVNLTIHF 1676
Query: 201 F-PKSCCTSVN--EVICHGIPDSRKLEDG--DIVNIDVTVY-YKGVHGDLNETYF----- 249
K N +I I D + + +N T Y ++ G L+ T F
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 250 --VGNA---DEASRQLVQCTY--------E-----C------LEKAISIVKPGVRFREIG 285
+ A D S+ L+ E +E + +V R +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF--YRGMTMQ 1794
Query: 286 EVINRHAT-MSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIV 336
+ R S + ++ N + +++ Q +V +TG +V
Sbjct: 1795 VAVPRDELGRSNYGMIAINPG-RVAASF--SQEALQYVVERVG--KRTGWLV 1841
Score = 28.5 bits (63), Expect = 4.2
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 32/106 (30%)
Query: 160 EVLDAAARM--IRPG-----VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE- 211
E+ + M I PG + + + VV G +NY N
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-----------NVE 1849
Query: 212 ---VICHG----------IPDSRKLEDGDIVNIDVTVYYKGVHGDL 244
+ G + + KL+ DI+ + ++ + V G L
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.85.1.1
Length = 60
Score = 40.7 bits (95), Expect = 2e-05
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 2 AGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
+ G + E +S SC CG+ A C C A +C C W H +
Sbjct: 5 SSGINQQEDSSESCWNCGRKASETCSGC-------NTARYCGSFCQHKDWEKHHHI 53
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 52
Score = 40.2 bits (94), Expect = 3e-05
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 4 GSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
G+ AE SCV CG+ A +C C + +C+ C + W H+ +
Sbjct: 1 GAMDAERKEQSCVNCGREAMSECTGCHK-------VNYCSTFCQRKDWKDHQHI 47
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 39.6 bits (92), Expect = 7e-05
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 2 AGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
+ G +A C C A +C +C +C ++C W H
Sbjct: 5 SSGLEAVAPERPRCAYCSAEASKRCSRCQN-------EWYCCRECQVKHWEKHGKT 53
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal
binding protein; NMR {Homo sapiens}
Length = 60
Score = 39.1 bits (91), Expect = 8e-05
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 5 SDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
+S SC CG+ A C C A +C C W H +
Sbjct: 6 GSPNSDSSESCWNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHHI 51
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 39.2 bits (91), Expect = 9e-05
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 5 SDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSV 57
+S SC CG+ A C C A +C C W H +
Sbjct: 10 LYFQGDSSESCWNCGRKASETCSGCNT-------ARYCGSFCQHKDWEKHHHI 55
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 35.9 bits (84), Expect = 0.018
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 27/88 (30%)
Query: 128 PKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAA------RMIRPG--VTTDEID 179
++P LQ ER R +R + R + PG + E+D
Sbjct: 398 LIIDPAY-LQT------GRDRERFRRALEASRTIGHRDELAGWRERELLPGTPNSAAEMD 450
Query: 180 RVVHEATITAGGYPSPLNYHFFPKSCCT 207
+ + IT +H P C T
Sbjct: 451 DFIARSVITH--------HH--P--CGT 466
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 34.8 bits (81), Expect = 0.043
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 30/91 (32%)
Query: 128 PKVEPN--SDLQHVVEIKTPDQIERMRETCRIAREVLDAAA------RMIRPG--VTTD- 176
P V+P +D + D + M R ARE+ A R + PG TD
Sbjct: 399 PMVDPRYFTDPE------GHD-MRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDE 451
Query: 177 EIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
E+ + + T YH P T
Sbjct: 452 ELQDYIRKTHNTV--------YH--P--VGT 470
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.080
Identities = 51/343 (14%), Positives = 94/343 (27%), Gaps = 115/343 (33%)
Query: 1 MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH-- 58
+ G GK + L + C D FK W + K+ +
Sbjct: 158 VLG--------------SGK-------TWVALDVCLSYKVQCKMD-FKIFWLNLKNCNSP 195
Query: 59 ---------LKAKLSAPGTGENSSLVSEGWRYCIKKGQAR----TPKLPH----FD--WT 99
L ++ T + + R + + R + +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 100 G-TLRPYPISSK-LTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM------ 151
+ +S K L + ++ D L L H TPD+++ +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLD 312
Query: 152 -------RETCRIAREVLDAAARMIRPGVTT---------DEIDRVVHEATITAGGYPSP 195
RE L A IR G+ T D++ ++ E+++ P+
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNV-LEPAE 370
Query: 196 LNYHF-----FPKSCCTSVNEVICHGIP---------DSRKLEDGDIVNIDV-------- 233
F FP S + IP D K + +VN
Sbjct: 371 YRKMFDRLSVFPP----SAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 234 ----TVYYKGVHGDLNETYFVGNADEAS--RQLVQCTYECLEK 270
T+ ++ +L +E + R +V Y +
Sbjct: 421 PKESTISIPSIYLELKVK----LENEYALHRSIVDH-YNIPKT 458
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 32.9 bits (76), Expect = 0.16
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 22/74 (29%)
Query: 144 TPDQIERMRETCRIAREVLDAA-------ARMIRPG--VTTDE-IDRVVHEATITAGGYP 193
I MRE R + ++L + +D+ + R V + TA
Sbjct: 453 NDLDIIAMREGIRFSYDLLFKGEGFKDLVESEYPWEMPLDSDKEMHRAVLDRCQTA---- 508
Query: 194 SPLNYHFFPKSCCT 207
+H P T
Sbjct: 509 ----FH--P--TGT 514
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 32.5 bits (75), Expect = 0.20
Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 22/74 (29%)
Query: 144 TPDQIERMRETCRIAREVLDAAA------RMIRPG---VTTDE-IDRVVHEATITAGGYP 193
T I M + + L A R P T D I+ + + T
Sbjct: 445 TEFDIFTMIQAVKSNLRFLSGQAWADFVIRPFDPRLRDPTDDAAIESYIRDNANTI---- 500
Query: 194 SPLNYHFFPKSCCT 207
+H P T
Sbjct: 501 ----FH--P--VGT 506
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 29.3 bits (66), Expect = 0.42
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 21/67 (31%)
Query: 4 GSDAAETTSLSCVRCGKPA-------------HLQCPKCME----LKL----PREGAAFC 42
GS + + C +C K H C KC L +G FC
Sbjct: 1 GSSGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFC 60
Query: 43 TQDCFKA 49
+ C+
Sbjct: 61 HKPCYAT 67
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 30.9 bits (69), Expect = 0.55
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 5 SDAAETTSLSCVRCGKPAHLQCPKCMELKL--PREGAAFCTQDCFKASWTSHKSV-HLKA 61
+D E T C CG A +C +C + + FC + C K + H
Sbjct: 196 TDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFC-KTCNTQVHLHPKRLNHKYN 254
Query: 62 KLSAP 66
+S P
Sbjct: 255 PVSLP 259
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural
genomics, transferase; 2.35A {Neisseria gonorrhoeae}
SCOP: c.68.1.13 PDB: 1vgz_A
Length = 231
Score = 30.2 bits (69), Expect = 0.71
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 161 VL--DAAARMIRPGVTTDEIDRVVHEATITAGG 191
+L DAA R + ++ + R++ +A A G
Sbjct: 107 ILVHDAA----RCCLPSEALARLIEQAGNAAEG 135
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase;
cytidylyltransferase, deoxyxylulose-5-phosphate pathway
(DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A
{Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A
1vgt_A 1vgu_A 3n9w_A 1h3m_A
Length = 236
Score = 30.2 bits (69), Expect = 0.76
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 161 VL--DAAARMIRPGVTTDEIDRVVHEATITAGG 191
VL DAA RP + D++ R++ + + G
Sbjct: 102 VLVHDAA----RPCLHQDDLARLLALSETSRTG 130
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 28.1 bits (62), Expect = 0.76
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 2 AGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKS 56
+ GS + +++ CV C + +CP C +C+ CF+ HK
Sbjct: 2 SSGSSGLKCSTVVCVICLEKPKYRCPAC--------RVPYCSVVCFR----KHKE 44
>3qww_A SET and MYND domain-containing protein 2; methyltransferase,
HSP90, transferase-transferase inhibitor; HET: SFG;
1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A*
3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 30.2 bits (67), Expect = 1.0
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 9 ETTSLSCVRCGKP--AHLQCPKCMELKLPREGAAFCTQDCFKASWTSHK 55
C C +C +C + A +C +C K W HK
Sbjct: 46 GERGHHCECCFARKEGLSKCGRC-------KQAFYCDVECQKEDWPLHK 87
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB:
1zkh_A
Length = 115
Score = 29.0 bits (65), Expect = 1.0
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 93 LPHFDWTGTLRPYPISSKLTVPAYIELPDWALDG---TPKVEPNSDLQHV 139
+P ++ P+S K+ VP + +W L+G + + +
Sbjct: 13 MPEEEFLRRN-KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVI 61
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP
pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB:
2xwm_A*
Length = 223
Score = 29.4 bits (67), Expect = 1.5
Identities = 10/33 (30%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 161 VL--DAAARMIRPGVTTDEIDRVVHEATITAGG 191
VL DAA R I RVV
Sbjct: 96 VLVHDAA----RALTPPALIARVVAALKEGHSA 124
>3gv2_A Ca, fusion protein consisting of capsid protein P24, linker and
carbon dioxide-concentrating...; hexameric retroviral
capsid; 7.00A {Human immunodeficiency virus type 1}
Length = 342
Score = 29.5 bits (66), Expect = 1.5
Identities = 13/94 (13%), Positives = 21/94 (22%), Gaps = 16/94 (17%)
Query: 1 MAGGSDAAETTSLSCVRCGKPAHLQCPKC----------MELKLPREGAAFCTQ---DCF 47
G AA + R +++ E+K
Sbjct: 242 GFPGILAAADAMVKAGRITIVGYIRAGSARFTLNIRGDVQEVKTAMAAGIDAINRTEGAD 301
Query: 48 KASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRY 81
+W H P + S E +RY
Sbjct: 302 VKTWVIIPRPHENVVAVLP---IDFSPEVEPFRY 332
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 29.9 bits (66), Expect = 1.5
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 9 ETTSLSCVRCGKP--AHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKS 56
+ C C K +C +C + A +C + C K +W +HK+
Sbjct: 46 SLINFVCHTCFKRQEKLHRCGQC-------KFAHYCDRTCQKDAWLNHKN 88
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural
genomics consortium, TBSGC, rossman fold; HET: CDM;
2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A
2xwn_A*
Length = 231
Score = 29.0 bits (66), Expect = 1.7
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 161 VL--DAAARMIRPGVTTDEIDRVVHEATITAGG 191
VL DAA R + RVV
Sbjct: 103 VLVHDAA----RALTPPALVARVVEALRDGYAA 131
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 29.1 bits (66), Expect = 2.3
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 144 TPDQIERMRETCRIAREVLDAAA------RMIRPG--VTTDE 177
+ ++AR + ++ A PG + D
Sbjct: 457 NELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDA 498
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA
motif, APKC, cell polarity, transferase/cell cycle
complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Length = 86
Score = 27.0 bits (60), Expect = 2.4
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 15/54 (27%)
Query: 227 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVR 280
I +DV + Y HGDL + N D L +A++ P +R
Sbjct: 42 QIPGLDVLLGYTDAHGDLLP---LTNDDS------------LHRALASGPPPLR 80
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional
regulato PSI-2, regulatory protein, structural genomics,
protein STR initiative; 1.90A {Rhodococcus SP} SCOP:
a.4.1.9 a.121.1.1
Length = 209
Score = 28.5 bits (64), Expect = 2.8
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 159 REVLDAAARMIR----PGVTTDEIDRVVHEATITAGGYPSPLNYHF 200
R + DA +I VTT + E+ + G LN++F
Sbjct: 12 RALADAVLALIAREGISAVTTRAVAE---ESGWSTGV----LNHYF 50
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 28.8 bits (64), Expect = 3.2
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 169 IRPGVTTDEIDRVVHEATITAGGY 192
R E++R + A G
Sbjct: 404 HRETSMVHELNRYIPTAAAFGGLC 427
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 26.5 bits (59), Expect = 3.4
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 21/56 (37%)
Query: 15 CVRCGKPA-------------HLQCPKCMELKLP--------REGAAFCTQDCFKA 49
C +C K H C KC + EG +C C+ A
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSA 58
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic;
transferase, non-mevalonate-pathway, herbicide,
allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana}
PDB: 2yc5_A* 1w77_A* 2ycm_A*
Length = 228
Score = 28.2 bits (64), Expect = 3.4
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 161 VL--DAAARMIRPGVTTDEIDRVVHEATITAGGYP 193
V D+A RP V T+++++V+ + +
Sbjct: 101 VCIHDSA----RPLVNTEDVEKVLKDGSAVGAAVL 131
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.5
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 29/55 (52%)
Query: 83 IKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQ 137
+KK QA L+ Y D A P + + ++
Sbjct: 22 LKKLQAS------------LKLYA-------------DDSA----PALAIKATME 47
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 28.3 bits (64), Expect = 3.8
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 143 KTPDQIERMRETCRIAREVLDAAARMIRPG 172
+T D I+ + +L+ +++PG
Sbjct: 213 RTMDDIKFC---QGLQMRLLEKGLEVLKPG 239
>2ibd_A Possible transcriptional regulator; probable transcriptional
regulatory protein, rhodococcus SP. structural genomics,
PSI-2; 1.50A {Rhodococcus SP}
Length = 204
Score = 28.1 bits (63), Expect = 3.9
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 16/50 (32%)
Query: 159 REVLDAAARMIR----PGVTTDEI-DRV-VHEATITAGGYPSPLNYHFFP 202
E+LD AA + T +I D + ++ YH F
Sbjct: 17 TELLDIAATLFAERGLRATTVRDIADAAGILSGSL----------YHHFD 56
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 27.9 bits (63), Expect = 4.1
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 123 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
ALD + L +V+ IK + ++R+ R C+
Sbjct: 95 ALDSLLT-DLGKKLDYVLNIKVEQEELMKRLTGRWICK 131
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding
3-helical bundle FO turn helix motif, HTH motif; HET:
UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9
a.121.1.1
Length = 199
Score = 27.8 bits (62), Expect = 4.3
Identities = 5/42 (11%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 145 PDQIERMRETCR-IAREVLDAAAR--MIRPGVTTDEIDRVVH 183
PD++ +R T +++ A + ++ + +
Sbjct: 114 PDEVSALRRTTEKNTTTLINLAKQHGLVHHDIAPGTYIVGLI 155
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 27.5 bits (62), Expect = 4.6
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 123 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
ALD + + + HV+ + PD+ IER+ R
Sbjct: 92 ALDEMLE-KKGLKVDHVLLFEVPDEVVIERLSGRRINP 128
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 27.9 bits (63), Expect = 4.6
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 16/56 (28%)
Query: 117 IELPDWA----LDGTPK--------VEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
I D LDG P+ E ++ +V+E PD+ ++R+ R
Sbjct: 72 IAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHA 127
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 28.0 bits (63), Expect = 4.7
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 16/60 (26%)
Query: 113 VPAYIELPDWA----LDGTPK--------VEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
V ++ D A DG P+ E + +V+EI P IERM R T
Sbjct: 76 VKERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHP 135
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 28.1 bits (63), Expect = 4.9
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 143 KTPDQIERMRETCRIAREVLDAAARMIRPG 172
P +RM + + +L A+R++ PG
Sbjct: 196 WGPSAPKRM---AEVQKALLAQASRLLGPG 222
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 27.5 bits (62), Expect = 5.2
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 123 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
AL+ + E + +V+ I+ +ER+ R C
Sbjct: 95 ALEEILE-EMGKPIDYVINIQVDKDVLMERLTGRRICS 131
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport,
vesicular trafficking, GTPase, LOWE syndr immunoglobulin
fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Length = 140
Score = 27.1 bits (60), Expect = 5.2
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 149 ERMRETCR-IAREVLDAAARMIRPGVT--TDEID--------RVVHEATITAGGYPSPLN 197
R R+ R +D P + E + I+ G P +
Sbjct: 3 RRYRKVFEDSVRI-MDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNG-QVPCH 60
Query: 198 YHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVY 236
+ F PK + + P LE + V+I + VY
Sbjct: 61 FSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 2.0A
{Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Length = 186
Score = 27.6 bits (62), Expect = 5.5
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 268 LEKAISIVK-PGVRFREI---GEVINRHATMSG 296
L+ AI + K + R GE+I+ ++G
Sbjct: 139 LDDAIRMKKKYRLNTRIATLDGELISGRGAITG 171
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 213
Score = 27.7 bits (62), Expect = 5.5
Identities = 4/32 (12%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 268 LEKAISIVKPGVRFREI---GEVINRHATMSG 296
+E + + + I G+ ++ ++G
Sbjct: 153 MEVSTQLAR-AFTMDCITLEGDQVSHRGALTG 183
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 27.6 bits (62), Expect = 6.2
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 123 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
L+ + + + L V PD+ + R+ R +
Sbjct: 124 DLNKLLQ-KNQTKLDGVFYFNVPDEVLVNRISGRLIHK 160
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 27.5 bits (62), Expect = 6.3
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 123 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
LD K E + L+ +E+K D+ + R+ R
Sbjct: 100 KLDQMLK-EQGTPLEKAIELKVDDELLVARITGRLIHP 136
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 27.5 bits (60), Expect = 6.6
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 136 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG 191
L + P+Q + E + + L+A GV +D++
Sbjct: 279 LGEMAAAPVPEQYLVLEELMDMNQHHLNA------LGVGHASLDQLCQVTAAHGLH 328
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 27.7 bits (62), Expect = 6.6
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 143 KTPDQIERMRETCRIAREVLDAAARMIRPG 172
+P+ + + RE++D+A +RPG
Sbjct: 213 WSPESNQEI---AATQRELIDSAFHALRPG 239
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 27.2 bits (61), Expect = 6.7
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 12/47 (25%)
Query: 122 WALDGTPK--------VEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
W LDG P+ + + PD+ +ER+ R
Sbjct: 87 WLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDP 133
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 27.6 bits (62), Expect = 6.8
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 6/35 (17%)
Query: 141 EIK---TPDQIERMRETCRIAREVLDAAARMIRPG 172
E++ D+I M + + RE+L++AAR+++PG
Sbjct: 351 ELRWRLREDKINEMSQ---LQRELLESAARLVKPG 382
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 27.1 bits (61), Expect = 6.8
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 123 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
L E L V+ + D IER+ R T
Sbjct: 100 GLAKILS-EIGDSLTSVIYFEIDDSEIIERISGRCTHP 136
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 27.6 bits (62), Expect = 6.8
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 20/68 (29%)
Query: 144 TPDQIERMRETCRIAREVLDAAA------RMIRPGV------TTDEIDRVVHEATITAGG 191
+ ++AR++ A PG T + V +
Sbjct: 461 NEFDLLGQAAASKLARDLTSQGAMKEYFAGETLPGYNLVQNATLSQWSDYVLQNFRPN-- 518
Query: 192 YPSPLNYH 199
+H
Sbjct: 519 ------WH 520
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 27.7 bits (62), Expect = 6.9
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 143 KTPDQIERMRETCRIAREVLDAAARMIRPG 172
T + + +E+L +A +M++
Sbjct: 201 WTEESPLYC---QKRQQEILSSAIKMLKNK 227
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 27.2 bits (61), Expect = 7.1
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 123 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
L + E + V+EI P + R+ R C+
Sbjct: 94 KLFEALQ-EKGMKINFVIEILLPREVAKNRIMGRRICK 130
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 27.2 bits (61), Expect = 7.1
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 113 VPAYIELPD---WALDGTP-------KVEPNSDLQHVVEIKTPDQ--IERM--RETCR 156
+ + +E W LDG P ++ ++ V+ + P + +R+ R
Sbjct: 95 MMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 27.3 bits (61), Expect = 7.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 211 EVICHGIPDSRKLEDGDIVNIDVTV 235
E + SR L++G+I +
Sbjct: 33 EALAFSSVKSRGLDEGEIKDAIAFK 57
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171,
ISPD_THET8, ISPD, structural genomics PSI; 2.20A
{Thermus thermophilus HB8}
Length = 236
Score = 27.2 bits (61), Expect = 7.4
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 161 VLDAAARMIRPGVTTDEIDRVVHEATITAGGYP 193
V D A RP V+ + RV+ A + P
Sbjct: 111 VHDVA----RPFVSRGLVARVLEAAQRSGAAVP 139
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 27.5 bits (62), Expect = 8.2
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 146 DQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEAT 186
D +R+RE ++ VT D+I VV T
Sbjct: 427 DTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWT 467
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 27.5 bits (62), Expect = 8.3
Identities = 10/100 (10%), Positives = 20/100 (20%), Gaps = 39/100 (39%)
Query: 128 PKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAA------RMIRPG--------- 172
P V+ N + + + E+L A +
Sbjct: 383 PNVKFNY-YSN------LTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP 435
Query: 173 ----VTTDE-IDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
T D + E+ + +H
Sbjct: 436 LPKDQTDDAAFETFCRESVASY--------WH--Y--HGG 463
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2; structural genomics, PSI-2, protein structure
initiative; 2.30A {Listeria monocytogenes str}
Length = 246
Score = 26.8 bits (60), Expect = 9.5
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 9/32 (28%)
Query: 163 DAAARMIRPGVTTDEIDRVV-----HEATITA 189
DA RP +T I+ + A T
Sbjct: 112 DAV----RPFLTHRIIEENIDAALETGAVDTV 139
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 27.3 bits (61), Expect = 9.9
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 126 GTPKVEPNSDLQHVVEIK--------TPDQIERMRETCRIAREVLDAAARMIRPGVTTDE 177
TP H++ TP+ ++ ++E I ++ A RM G+T
Sbjct: 372 KTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSI--YLVKAGGRMSMCGLTESN 429
Query: 178 IDRVVH 183
D V
Sbjct: 430 CDYVAE 435
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.434
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,549,763
Number of extensions: 333454
Number of successful extensions: 1190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1114
Number of HSP's successfully gapped: 119
Length of query: 349
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 255
Effective length of database: 4,077,219
Effective search space: 1039690845
Effective search space used: 1039690845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)