RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 018913
(349 letters)
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 587 bits (1514), Expect = 0.0
Identities = 242/297 (81%), Positives = 267/297 (89%), Gaps = 2/297 (0%)
Query: 4 GSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKL 63
+A T+ L+C RC KPAHLQCPKC+ELKLPREGA+FC+QDCFKA+W+SHKSVH KAKL
Sbjct: 1 MEEALTTSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHTKAKL 60
Query: 64 SAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWA 123
S+ G+NS +EGW YC+KKGQART KLP FDWTG LRPYPIS + VP +I PDWA
Sbjct: 61 SS--IGQNSDAPAEGWLYCLKKGQARTSKLPDFDWTGPLRPYPISPRRVVPDHIPKPDWA 118
Query: 124 LDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVH 183
LDGTPK+EPNSDLQH VEIKTP+QI+RMRETCRIAREVLDAAAR I+PGVTTDEIDRVVH
Sbjct: 119 LDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVH 178
Query: 184 EATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGD 243
EATI AGGYPSPLNYHFFPKSCCTSVNEVICHGIPD+RKLEDGDIVN+DVTVYYKG HGD
Sbjct: 179 EATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGD 238
Query: 244 LNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
LNET+FVGN DEASRQLV+CTYECLEKAI+IVKPGVR+RE+GEVINRHATMSG SVV
Sbjct: 239 LNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVV 295
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 258 bits (662), Expect = 7e-86
Identities = 85/153 (55%), Positives = 104/153 (67%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
IE MRE RI EVLD A+ I+PGVTT E+D++ HE G YP+PL Y+ FPKS CT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 208 SVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYEC 267
SVNEV+CHGIPD R L+DGDIVNIDV V G HGD T+ VG E +++LV+ T E
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEA 120
Query: 268 LEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
L K I VKPG R +IG I ++A +G+SVV
Sbjct: 121 LYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVV 153
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 245 bits (629), Expect = 1e-80
Identities = 82/162 (50%), Positives = 105/162 (64%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
+ IKTP++IE+MR R+A EVLD ++PGVTT E+DR+ E G P+PL Y
Sbjct: 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
H FPKS CTSVNEV+CHGIP + L++GDIVNIDVTV G HGD + T+ VG +
Sbjct: 62 HGFPKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDK 121
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+L + T E L I+ VKPG R +IG I ++A GFSVV
Sbjct: 122 RLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVV 163
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 224 bits (573), Expect = 3e-72
Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ IKTP++IE+MRE +IA + L A +++PGVTT E+D + E G YP+ L Y
Sbjct: 2 MISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGY 61
Query: 199 HFFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-ADEA 256
FP C SVNEV+ HGIP D + L++GDIV IDV + G GD T+ VG +DE
Sbjct: 62 KGFPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDED 121
Query: 257 SRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
+++L++ T E L I VKPG R +IG I +A GFSVV
Sbjct: 122 AKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVV 165
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 211 bits (540), Expect = 3e-67
Identities = 67/161 (41%), Positives = 92/161 (57%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+EIK+P ++E+MR+ RI L + + PG+TT E+DR+ + G PSP Y+
Sbjct: 8 MEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYY 67
Query: 200 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
FP S C SVNE + HGIP R ++DGD+VNIDV+ Y G HGD T+ VG E + +
Sbjct: 68 GFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEK 127
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
L + E L I VK G +IG I A +G+SVV
Sbjct: 128 LCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVV 168
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 208 bits (532), Expect = 3e-66
Identities = 78/161 (48%), Positives = 106/161 (65%)
Query: 140 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 199
+ +K+PD+IE++R+ R+A EVL+ R ++PGV+T E+DR+ + G P+ L Y+
Sbjct: 1 ISLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYY 60
Query: 200 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 259
FP S C SVNEV+ HGIPD + L+DGDIVNIDV V Y G HGD +T+ VG + +
Sbjct: 61 GFPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEK 120
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
L++CT E L KAI KPG R EIG I ++A GFSVV
Sbjct: 121 LLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV 161
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 168 bits (427), Expect = 6e-50
Identities = 75/166 (45%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 137 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL 196
Q+ + IKTP+QIE++R+ C++ +LDA + GVTT+E+D + E P+PL
Sbjct: 38 QYDIIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPL 97
Query: 197 NYHF--FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD 254
NY FPK+ CTS+NEVICHGIP+ L++GDI+NIDV+ G +GD + +G
Sbjct: 98 NYGSPPFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVS 157
Query: 255 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
E +++ Q + ECL AI+I+KPG+ EIGEVI A GFSVV
Sbjct: 158 EIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVV 203
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 157 bits (400), Expect = 7e-47
Identities = 54/157 (34%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 149 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTS 208
E MR+ RIA L+AA IRPGVT E+ + A + GG FP +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA----RGPAFPPIVASG 56
Query: 209 VNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECL 268
N + H IP R L+DGD+V IDV Y G H D+ T+ VG R+L + E
Sbjct: 57 PNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQ 116
Query: 269 EKAISIVKPGVRFREIGEVINRHATMSGFS-VVMHNV 304
E AI+ VKPGV ++ G+ H +
Sbjct: 117 EAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGL 153
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 128 bits (324), Expect = 1e-35
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
I R+R+ IA + AAA IRPGVT E+ + +A AGGYP+
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAG--------PTIV 52
Query: 208 SVNEV--ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTY 265
+ H PD R+L++GD+V +D+ Y G H DL T+ +G + R+L +
Sbjct: 53 GSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVR 112
Query: 266 ECLEKAISIVKPGVRFREIGEVINR 290
E E A++ ++PGV E+
Sbjct: 113 EAQEAALAALRPGVTAEEVDAAARE 137
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 116 bits (292), Expect = 1e-29
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 12/176 (6%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG-YPSPLNYHF 200
IK+P +I ++R+ IA L+AA IRPG+T EI + A G PS F
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGPS-----F 208
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQL 260
+ N + H P RKL DGD+V ID+ Y G D+ T+ +G + R++
Sbjct: 209 DTI-VASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREI 267
Query: 261 VQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVM-----HNVWFAIVIH 311
+ E E AI+ ++PGV E+ + +G+ + H V F + +H
Sbjct: 268 YEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVH 323
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 98.7 bits (247), Expect = 9e-24
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
+E+ E +IA +V + AA++I+PG ++ V G P+ FP C
Sbjct: 2 LEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FP--CNI 53
Query: 208 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
S+NEV H P D R +GD+V +D+ + G D T +G E LV+ +
Sbjct: 54 SINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYE---DLVEAS 110
Query: 265 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
E LE AI +V+PGV EIG VI GF +
Sbjct: 111 EEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPI 146
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 97.4 bits (242), Expect = 1e-23
Identities = 51/161 (31%), Positives = 78/161 (48%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 198
++ IKT ++I+ M E+ ++ A++++PG+TT EI+ V G Y
Sbjct: 1 MITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGY 60
Query: 199 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 258
+ +P + C SVN+ +CH P L +GDIV ID+ V G D TY VG + +
Sbjct: 61 NGYPYAICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAE 120
Query: 259 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV 299
+L+ L K I G R +IG I + GFSV
Sbjct: 121 KLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSV 161
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 93.7 bits (234), Expect = 1e-22
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCC 206
IE +R+ RIA + + I+PG+T E+ + G PS F
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPS------FDTIVA 54
Query: 207 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 266
+ N + HG+P RK+E+GD+V ID Y G D+ T VG + +++ + E
Sbjct: 55 SGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLE 114
Query: 267 CLEKAISIVKPGVRFREI 284
+ AI VKPGV +E+
Sbjct: 115 AQQAAIKAVKPGVTAKEV 132
Score = 35.6 bits (83), Expect = 0.020
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 134 SDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 192
SD+ V + P + ++E I E AA + ++PGVT E+D+ + I GY
Sbjct: 90 SDITRTVAVGEPS--DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARD-VIEEAGY 145
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 80.4 bits (199), Expect = 3e-17
Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
+E+ RE I R+V A +I+PG+T EI V G P+ FP +
Sbjct: 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPA------FPVNL-- 52
Query: 208 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVH--GDLNETYFVGNADEASRQLVQ 262
S+NE H P D L++GD+V +D G H G + ++ F + D L++
Sbjct: 53 SINECAAHYTPNAGDDTVLKEGDVVKLDF-----GAHVDGYIADSAFTVDFDPKYDDLLE 107
Query: 263 CTYECLEKAISIVKPGVRFREIGEVINR 290
E L AI P VR EIGE I
Sbjct: 108 AAKEALNAAIKEAGPDVRLGEIGEAIEE 135
Score = 32.2 bits (74), Expect = 0.34
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 21/85 (24%)
Query: 158 AREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSP---LNYHFFPKSCCTSVNEVIC 214
A+E L+AA + P V EI + E I + G+ P L H S+
Sbjct: 109 AKEALNAAIKEAGPDVRLGEIGEAIEE-VIESYGF-KPIRNLTGH--------SIERYRL 158
Query: 215 HG---IP-----DSRKLEDGDIVNI 231
H IP + +LE+GD+ I
Sbjct: 159 HAGKSIPNVKGGEGTRLEEGDVYAI 183
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 79.4 bits (196), Expect = 7e-17
Identities = 53/201 (26%), Positives = 81/201 (40%), Gaps = 26/201 (12%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
E+ E +I +V AA I PGV E+ V G P+ FP C
Sbjct: 5 AEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEPA------FP--CNI 56
Query: 208 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 264
S+NE H P D +DGD+V +D+ + V G + +T + + LV+
Sbjct: 57 SINECAAHFTPKAGDKTVFKDGDVVKLDLGAH---VDGYIADTAITVDLGDQYDNLVKAA 113
Query: 265 YECLEKAISIVKPGVRFREIGEVI---------NRHATMSGFSVVMHNVWFAIVIHCYST 315
+ L AI ++ GVR EIG+ I + ++G S+ + + I
Sbjct: 114 KDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIPNVKE 173
Query: 316 EDTKQC---LVVSFSCFAKTG 333
DT + VV+ FA G
Sbjct: 174 RDTTKLEEGDVVAIEPFATDG 194
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 64.2 bits (156), Expect = 2e-11
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 35/188 (18%)
Query: 141 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEI---------DRVVHEA---TIT 188
+IKTP+++E++R C IA + R I+ G++ EI + +A TI
Sbjct: 126 QIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIV 185
Query: 189 AGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETY 248
A G+ L HG + + G+ V +D Y+G D+ T
Sbjct: 186 ASGWRGALP-----------------HGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTL 228
Query: 249 FVGNADEASRQ-----LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVM-H 302
V ++ + Q + AIS ++PGVR +++ + R T +G+ H
Sbjct: 229 LVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGH 288
Query: 303 NVWFAIVI 310
N AI I
Sbjct: 289 NTGHAIGI 296
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 61.7 bits (150), Expect = 2e-10
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 200
K+P++I +R I+ A RPG+ +++ + HE YPS Y+
Sbjct: 173 FKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYPS---YNT 229
Query: 201 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 259
S N I H + ++ DGD+V ID YKG GD+ T+ V G A R+
Sbjct: 230 IVGS---GENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQRE 286
Query: 260 LVQCTYECLEKAISIVKPGVRFREIGEVINR 290
+ E LE ++ + +PG RE+ + R
Sbjct: 287 IYDIVLESLETSLRLYRPGTSIREVTGEVVR 317
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 59.7 bits (144), Expect = 4e-10
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 130 VEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA 189
V+ +S + IK+P +I+R+R++ I + A+++IR G T+ E+ A +
Sbjct: 83 VDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVM-- 140
Query: 190 GGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYF 249
S HF + + IP + K GD++ D V G D+ T+
Sbjct: 141 ----SKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFV 196
Query: 250 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREI 284
VG E +R++ Q E +S+V PGV+ +++
Sbjct: 197 VGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDV 231
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 60.1 bits (145), Expect = 4e-10
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 130 VEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA 189
V+ +S + IK+P +I+R+R++ I + A+++IR G T+ E+ A +
Sbjct: 166 VDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVM-- 223
Query: 190 GGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYF 249
S HF + + IP + K GD++ D V G D+ T+
Sbjct: 224 ----SKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFV 279
Query: 250 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREI 284
VG E +R++ Q E +S+V PGV+ +++
Sbjct: 280 VGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDV 314
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 58.3 bits (141), Expect = 9e-10
Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 31/193 (16%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL-- 196
++ +K+ +IE M + +I+PGV E++ V P +
Sbjct: 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGV 60
Query: 197 --NYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDV--------------------- 233
+P + C +N+ + H P L++GD++ +D+
Sbjct: 61 DGAMMDYPYATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNV 120
Query: 234 ------TVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEV 287
T Y+G D Y VG + + L+ T E + + I G R +IG
Sbjct: 121 EQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAA 180
Query: 288 INRHATMSGFSVV 300
I +A G+ VV
Sbjct: 181 IQEYAESRGYGVV 193
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 58.9 bits (142), Expect = 1e-09
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 126 GTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA 185
G V+ + + IK+P +IE +R++ I + +AA+ IR G T E+ A
Sbjct: 161 GLKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAA 220
Query: 186 TITAGGYPSPLNYHFFPKSCCTSVNEVICHG-------IPDSRKLEDGDIVNIDVTVYYK 238
++ FP++ + N +I G I D+ + GD++ D +
Sbjct: 221 VMS------------FPETNFSRFN-LISVGDNFSPKIIADTTPAKVGDLIKFDCGIDVA 267
Query: 239 GVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREI 284
G DL T+ +G D+ ++Q+ E +S+V PGV+ + +
Sbjct: 268 GYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAV 313
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 55.7 bits (135), Expect = 5e-09
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 207
IE MR+ C I+ E AA + RPG++ E++ E + G +Y
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEF-EYEFRSRGARLAYSYI-----VAA 54
Query: 208 SVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYE 266
N I H + + + L+DGD+V ID Y G D+ T+ V G + R+L +
Sbjct: 55 GSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 267 CLEKAISIVKPGVRFREI 284
+ AI+ KPGV + +I
Sbjct: 115 AQKAAIAACKPGVSYEDI 132
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 52.2 bits (125), Expect = 2e-07
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 256
FP C SVN + H P L++GD+V ID+ + G + T+ VG A E
Sbjct: 77 FPT--CISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEE 134
Query: 257 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVV 300
++ + E A+ +VKPG ++ E IN+ A G + V
Sbjct: 135 PVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPV 183
Score = 28.3 bits (63), Expect = 6.4
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 158 AREVLDAAARMIRPGVT----TDEIDRVVH 183
A +AA R+++PG T T+ I++V H
Sbjct: 147 AHLAAEAALRLVKPGNTNTQVTEAINKVAH 176
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog;
Provisional.
Length = 606
Score = 49.3 bits (118), Expect = 2e-06
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSS 73
V +PA LQC C++ KLP + C+ CF +W H+ +H +A A EN +
Sbjct: 66 SVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERA---ASAVRENGN 121
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 46.6 bits (111), Expect = 5e-06
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 30/166 (18%)
Query: 148 IERMRETCRIAREVLDAAARMIRPGVTTDEI----DRVVHEATITAGGYPSPLNYH---F 200
+ + + +IA +VL + PG ++ D+++ E Y
Sbjct: 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEEL--GKVYKKEKKLEKGIA 58
Query: 201 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGD-----LNETYFVG 251
FP C SVN +CH P + L+DGD+V ID+ G H D + T VG
Sbjct: 59 FPT--CISVNNCVCHFSPLKSDATYTLKDGDVVKIDL-----GCHIDGYIAVVAHTIVVG 111
Query: 252 NADEASR-----QLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 292
E ++ + LE A+ +++PG + +I E I +
Sbjct: 112 AEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVI 157
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 39.4 bits (92), Expect = 0.001
Identities = 18/75 (24%), Positives = 38/75 (50%)
Query: 215 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISI 274
H +RK++ GDI++++ G + L T F+ +A ++ + E+ + +
Sbjct: 69 HNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLEL 128
Query: 275 VKPGVRFREIGEVIN 289
+KPG R ++I +N
Sbjct: 129 IKPGARCKDIAAELN 143
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 38.2 bits (89), Expect = 0.005
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 20/152 (13%)
Query: 146 DQIERMRETCRIAREVLDAAARMIRPGVT----TDEIDRVVHEATITAGGYPSPLNYHFF 201
+Q + +R + R+V A +I+PGV + I+ E I A G F
Sbjct: 156 EQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRE-LIEADGLKCGWA---F 211
Query: 202 PKSCCTSVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVH--GDLNETYFVGNADEA 256
P C S+N H P D L D+ +D G H G + + F +
Sbjct: 212 PTGC--SLNHCAAHYTPNTGDKTVLTYDDVCKLDF-----GTHVNGRIIDCAFTVAFNPK 264
Query: 257 SRQLVQCTYECLEKAISIVKPGVRFREIGEVI 288
L+Q T + I VR +IG I
Sbjct: 265 YDPLLQATKDATNTGIKEAGIDVRLSDIGAAI 296
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 36.3 bits (85), Expect = 0.024
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 21/73 (28%)
Query: 144 TPDQIERMRETCRIAREVLDAAA------RMIRPG--VTTD-EIDRVVHEATITAGGYPS 194
T R+ R+ RE++ A R I PG V TD EID V E TA
Sbjct: 417 TEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADVQTDEEIDAFVREHAETA----- 471
Query: 195 PLNYHFFPKSCCT 207
YH P CT
Sbjct: 472 ---YH--P--SCT 477
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger.
Length = 39
Score = 32.0 bits (73), Expect = 0.026
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 15 CVRCGKPAH--LQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVH 58
C CGK A L+C +C +C+++C KA W HK
Sbjct: 1 CAVCGKEALKLLRCSRCK-------SVYYCSKECQKADWPYHKKEC 39
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 35.3 bits (81), Expect = 0.046
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATIT-----AGGYPS-- 194
+K+P +I MR RI + I PG+ ++ +++A I G YP+
Sbjct: 158 VKSPTEIAYMRIAARIVENMHQRIFERIEPGMRKCDLVAEIYDAGIRGADGFGGDYPAIV 217
Query: 195 PLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD 254
PL P + + H D ++ G+ ++ YK H L+ T F+G
Sbjct: 218 PL----LP----SGADASAPHLTWDDSPMKKGEGTFFEIAGCYKRYHCPLSRTVFLGKPT 269
Query: 255 EASRQLVQCTYECLEKAISIVKPG 278
+A + E +E ++ KPG
Sbjct: 270 QAFLDAEKAVLEGMEAGLAAAKPG 293
>gnl|CDD|224842 COG1931, COG1931, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 140
Score = 32.0 bits (73), Expect = 0.21
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 139 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG------GY 192
V E +T +ER+RE R + +LD A ++ G+T +E+ +++ G
Sbjct: 42 VGEGRTLKSLERLRELLR-KQRILDTARMVLEKGLTGNEVTFYLNKQAAYVGRVNFVEED 100
Query: 193 PSPL 196
SPL
Sbjct: 101 ESPL 104
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics].
Length = 132
Score = 30.6 bits (69), Expect = 0.46
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 176 DEIDRVVHEATITAGGYPSPLNYHFFPKS 204
+E+++++ + TI GG +N PKS
Sbjct: 93 EELNKLLGDVTIAQGGVLPNINPGLLPKS 121
>gnl|CDD|178038 PLN02417, PLN02417, dihydrodipicolinate synthase.
Length = 280
Score = 31.2 bits (71), Expect = 0.67
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 290 RHATMSGFSVVMHNVWFAIVIHCYSTEDTKQCLVVSFSCFAKTGKIVLW 338
HAT GF+V MH A+ I+ Y + +++ L+ F G +++
Sbjct: 86 IHATEQGFAVGMHA---ALHINPYYGKTSQEGLIKHFETVLDMGPTIIY 131
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 30.9 bits (70), Expect = 0.96
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 225 DGDIVNIDVTVYYKGVHGDLNETYF-VGNADEASRQLVQ 262
D IV++D V Y+ D + + V NA+ A RQLVQ
Sbjct: 83 DNVIVSVDAVVQYRVT--DPQKAVYNVENAEAALRQLVQ 119
>gnl|CDD|234035 TIGR02860, spore_IV_B, stage IV sporulation protein B. SpoIVB, the
stage IV sporulation protein B of endospore-forming
bacteria such as Bacillus subtilis, is a serine
proteinase, expressed in the spore (rather than mother
cell) compartment, that participates in a proteolytic
activation cascade for Sigma-K. It appears to be
universal among endospore-forming bacteria and occurs
nowhere else [Cellular processes, Sporulation and
germination].
Length = 402
Score = 30.8 bits (70), Expect = 1.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 215 HGI--PDSRK---LEDGDIVNIDVTVYYKGVHG 242
H I D+ K +E+G IVN +T KG G
Sbjct: 220 HVITDIDTGKPISVENGQIVNSSITSIEKGRRG 252
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 30.9 bits (71), Expect = 1.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 217 IPDSRKLEDGDIVNIDVTVYYKGV 240
+P R E+GD V ID G
Sbjct: 152 VPVERPAENGDRVTIDFVGSIDGE 175
>gnl|CDD|217823 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is
required for propionate catabolism. It catalyzes the
third step of the 2-methylcitric acid cycle.
Length = 445
Score = 30.7 bits (70), Expect = 1.2
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 155 CRIAREVLDAAARMIRP-GVTTDEIDRVV---HEATITAGGYPSPLN 197
R A DAA + R G DEI+ + E I P
Sbjct: 267 ERHAHSAADAALALRREEGDRADEIESIEIETFEVAIRIINKRGPPA 313
>gnl|CDD|227872 COG5585, COG5585, NAD+--asparagine ADP-ribosyltransferase [Signal
transduction mechanisms].
Length = 417
Score = 30.2 bits (68), Expect = 1.7
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 13/135 (9%)
Query: 156 RIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 215
+ A +VL A G I R +H T+ + C V +
Sbjct: 177 KYANQVLKA------IGAKLSGITRQLH-GTVAGVKEAEVGEFPPVHPGCRNGFGGVKEN 229
Query: 216 GIPDSRKLED-----GDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEK 270
+ D + L+ D+ D+ Y K D NE + ++L + L+
Sbjct: 230 FVKDPKSLDQNPNIHDDLGKKDLKNYTKDPRADENEKLRQTQDRDLGKKLRKTGMPALKN 289
Query: 271 AISIVKPG-VRFREI 284
++P VR R+
Sbjct: 290 GEGQIRPKEVRIRKK 304
>gnl|CDD|224978 COG2067, FadL, Long-chain fatty acid transport protein [Lipid
metabolism].
Length = 440
Score = 30.1 bits (68), Expect = 1.8
Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 23/107 (21%)
Query: 38 GAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFD 97
G A+ D + + V + K G S ++ G A
Sbjct: 225 GVAYEINDNNRIGLSYRSKVKMDFK------GGYESSLNLGMAGLPIGPLA--------- 269
Query: 98 WTGTLRPYPISSKLTVPAYIEL-------PDWALDGTPKVEPNSDLQ 137
G + P L++PA EL WA+ G+ K S
Sbjct: 270 -LGGVTPGSGKLTLSLPASAELSGQHKVADQWAIHGSVKWTDWSSFD 315
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 28.6 bits (65), Expect = 2.1
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 269 EKAISIVKP-GVRFREIGEVINR 290
E+ + I+KP GV+ IGE+I+R
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISR 23
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 28.5 bits (64), Expect = 3.3
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 125 DGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHE 184
G P ++PN P + +R R+AR +L AA + PG
Sbjct: 15 LGLPVIDPNYL-------SDPADLAALRAALRLARRILAAALVELTPGPVEVVPGAAEAS 67
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 29.3 bits (66), Expect = 3.5
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 149 ERMRETCRIAREVLDAAARM----IRPGVTTDEIDR------VVHEATITAGGYPSPLNY 198
+R R +A+ AA + +RPG + R A + G Y P+N+
Sbjct: 9 DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNW 68
Query: 199 HFFP 202
HF P
Sbjct: 69 HFKP 72
>gnl|CDD|227919 COG5632, COG5632, N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane].
Length = 302
Score = 29.0 bits (65), Expect = 4.1
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 94 PHFDWTGTLRPYPISSKLTVPAY 116
H DW+G L P K A
Sbjct: 139 KHKDWSGKLCPARYLDKGRWDAV 161
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 28.9 bits (65), Expect = 4.4
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 26/68 (38%)
Query: 104 PYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLD 163
P I+ +LTVP + TP I+ +RE +
Sbjct: 338 PEQIAKELTVPERV--------------------------TPWNIDELREYVLNGPDSWP 371
Query: 164 AAARMIRP 171
A +IRP
Sbjct: 372 GANYVIRP 379
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 28.7 bits (65), Expect = 4.5
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 219 DSRKLEDGDIVNIDVTVYYKGV 240
+ R E GD V ID + G
Sbjct: 143 ERRAAEKGDRVTIDFEGFIDGE 164
>gnl|CDD|222530 pfam14082, DUF4263, Domain of unknown function (DUF4263). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, archaea,
eukaryotes and viruses. Proteins in this family are
typically between 244 and 403 amino acids in length.
Length = 162
Score = 28.0 bits (63), Expect = 4.7
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 130 VEPNSDLQHVVEIKTPDQ---IERMRETCRIAREVLDAAARMIR 170
+ +SD +VEIK P+ + R + E+ A ++++
Sbjct: 52 ADKDSDNLVLVEIKRPNTNLFTKTPRGNGAPSAELSGAISQILD 95
>gnl|CDD|129632 TIGR00541, hisDCase_pyru, histidine decarboxylase, pyruvoyl type.
This enzyme converts histadine to histamine in a single
step by catalyzing the release of CO2. This type is
synthesized as an inactive single chain precursor, then
cleaved into two chains. The Ser at the new N-terminus
at the cleavage site is converted to a pyruvoyl group
essential for activity. This type of histidine
decarboxylase appears is known so far only in some
Gram-positive bacteria, where it may play a role in
amino acid catabolism. There is also a pyridoxal
phosphate type histidine decarboxylase, as found in
human, where histamine is a biologically active amine
[Energy metabolism, Amino acids and amines].
Length = 310
Score = 28.4 bits (63), Expect = 5.4
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 102 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM 151
+ P I + +T Y+ L A+ G + P+ D + + I P+ ++ M
Sbjct: 250 MEPGEIGNAITCAPYVSLAIDAIPGGSILTPDEDFEILENISLPEWLDDM 299
>gnl|CDD|233451 TIGR01531, glyc_debranch, glycogen debranching enzymye. glycogen
debranching enzyme possesses two different catalytic
activities; oligo-1,4-->1,4-glucantransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site
directed mutagenesis studies in S. cerevisiae indicate
that the transferase and glucosidase activities are
independent and located in different regions of the
polypeptide chain. Proteins in this model belong to the
larger alpha-amylase family. The model covers eukaryotic
proteins with a seed composed of human, nematode and
yeast sequences. Yeast seed sequence is well
characterized. The model is quite rigorous; either query
sequence yields large bit score or it fails to hit the
model altogether. There doesn't appear to be any middle
ground [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 1464
Score = 28.7 bits (64), Expect = 5.6
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 244 LNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFRE--IGEVINRHATMSGFSVVM 301
++ + A + L + YE L+K G++FRE G I+R T GF+V +
Sbjct: 1123 PDDDSIPVDDGRADQYLFEVIYEALQKHFQ----GIQFRERNAGPQIDRVMTDEGFNVTI 1178
Query: 302 HNVWFAIVIH 311
W I+
Sbjct: 1179 GVDWETGFIY 1188
>gnl|CDD|206093 pfam13922, PHD_3, PHD domain of transcriptional enhancer, Asx.
This is the DNA-binding domain on the additional sex
combs-like 1 proteins. The Asx protein acts as an
enhancer of trithorax and polycomb in displaying
bidirectional homoeotic phenotypes in Drosophila,
suggesting that it is required for maintenance of both
activation and silencing of Hox genes. Asx is required
for normal adult haematopoiesis and its function
depends on its cellular context.
Length = 64
Score = 26.3 bits (58), Expect = 5.7
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 1 MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKAS 50
G + AE T+ C C A + C +C AFC DC S
Sbjct: 17 NFSGENTAEATANKCA-CRLKAMVICQQC---------GAFCHDDCIGPS 56
>gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like
receiver domain and an HD-GYP domain [Transcription /
Signal transduction mechanisms].
Length = 360
Score = 28.5 bits (64), Expect = 6.2
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 131 EPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHE 184
P+S L T ++ E M+ + E+L ++ R+++ EI R HE
Sbjct: 228 IPDSIL-LKPGKLTSEEFEIMKGHPILGAEILKSSERLMQVAA---EIARHHHE 277
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 28.3 bits (63), Expect = 7.1
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 142 IKTPDQIERMRETCRIAREVLDAAA------RMIRPGV---TTDEIDRVVHEATITA 189
+ + RE R+ RE+L A I PG T +EID V TA
Sbjct: 408 MSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGPEVQTDEEIDEFVRRHGETA 464
>gnl|CDD|203013 pfam04438, zf-HIT, HIT zinc finger. This presumed zinc finger
contains up to 6 cysteine residues that could
coordinate zinc. The domain is named after the HIT
protein. This domain is also found in the Thyroid
receptor interacting protein 3 (TRIP-3) that
specifically interacts with the ligand binding domain
of the thyroid receptor.
Length = 30
Score = 24.9 bits (55), Expect = 7.3
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 15 CVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFK 48
C CG P+ +CP+C G +C+ +C+K
Sbjct: 5 CSVCGNPSKYRCPRC--------GVRYCSLECYK 30
>gnl|CDD|143439 cd07121, ALDH_EutE, Ethanolamine utilization protein EutE-like.
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an
NAD+ and CoA-dependent acetaldehyde dehydrogenase,
acetylating (EC=1.2.1.10), converts acetaldehyde into
acetyl-CoA. This CD is limited to such monofunctional
enzymes as the Ethanolamine utilization protein, EutE,
in Salmonella typhimurium. Mutations in eutE abolish
the ability to utilize ethanolamine as a carbon source.
Length = 429
Score = 28.0 bits (63), Expect = 8.9
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 239 GVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGV--RFREIGE 286
GV +++ V A A +Q +CT EK I ++ + E+ E
Sbjct: 1 GVFATVDDA--VAAAKAAQKQYRKCTLADREKIIEAIREALLSNAEELAE 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.434
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,477,217
Number of extensions: 1640730
Number of successful extensions: 1775
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1722
Number of HSP's successfully gapped: 70
Length of query: 349
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 251
Effective length of database: 6,590,910
Effective search space: 1654318410
Effective search space used: 1654318410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)