BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018914
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 122/262 (46%), Gaps = 30/262 (11%)
Query: 14 LPLIRVYKDGSVERMMDSPYVPPTLDPDPQFGVSSKDVTISQNPAISARLYLPKLAQPHQ 73
LP++ + D ++ R + P + DP V +KD+ ++ RL+LP+ A +
Sbjct: 22 LPIV-LNPDRTITRPIQIPSTAASPDPTSSSPVLTKDLALNPLHNTFVRLFLPRHALYNS 80
Query: 74 -KLTVLVYFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCW 132
KL ++VYFHG F SA S I H + + + V+ S++YRLAPEH LPAAY+D
Sbjct: 81 AKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHRLPAAYDDAM 140
Query: 133 TAFQWVASHRNRXXXXXXXXXXXXXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNI 192
A QW+ R+ WL N DF FI G+SAGGNI ++
Sbjct: 141 EALQWIKDSRDE----------------------WLTNFADFSNCFIMGESAGGNIAYHA 178
Query: 193 AMKAGEDDQESLLKEGTGVRILGAFLVHPFFWGSGPVGSESDVSDNYDHKKRLEYLIWEF 252
++A E L ++I G L P F GS GSE ++++ + LIWE
Sbjct: 179 GLRAAAVADELL-----PLKIKGLVLDEPGFGGSKRTGSELRLANDSRLPTFVLDLIWEL 233
Query: 253 VYPTAPGGIDNPMINPVGSGKP 274
P D+ NP +P
Sbjct: 234 SLPMG-ADRDHEYCNPTAESEP 254
>pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della
Recognition By The Gibberellin Receptor
pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della
Recognition By The Gibberellin Receptor
Length = 351
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 123/280 (43%), Gaps = 50/280 (17%)
Query: 37 TLDPDPQFGVSSKDVTISQNPAISARLYLPKLAQPHQK--------------LTVLVYFH 82
T + +P GV S DV I + + +R+Y P A Q + V+++FH
Sbjct: 61 TANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFH 120
Query: 83 GSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVASHR 142
G +F SA S I LV + + VS+ YR APE+ P AY+D W A WV
Sbjct: 121 GGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV---- 176
Query: 143 NRXXXXXXXXXXXXXXXVINNKEPWLLNHGDFE-RLFIGGDSAGGNIVHNIAMKAGEDDQ 201
N WL + D + +F+ GDS+GGNI HN+A++AGE
Sbjct: 177 --------------------NSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE--- 213
Query: 202 ESLLKEGTGVRILGAFLVHPFFWGSGPVGSESDVSDNYDHKKRLEYLIWEFVYPTAPGGI 261
+G+ +LG L++P F G+ SE + Y R W+ P
Sbjct: 214 -------SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDR- 265
Query: 262 DNPMINPVGSGKPSLAKLACSRMLVCVAGKDSLRDRGVLY 301
++P NP SL ++ + LV VAG D +RD + Y
Sbjct: 266 EHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAY 305
>pdb|3EBL|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3ED1|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga3
Length = 365
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 135/307 (43%), Gaps = 60/307 (19%)
Query: 22 DGSVERMMDSPYVPPTL--DPDPQFGVSSKDVTISQNPAISARLYL-------------- 65
DG+ ER + Y+ + + P GVSS D I Q+ + R+Y
Sbjct: 37 DGTFERDL-GEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAV 95
Query: 66 --PKL-----AQPHQKLTVLVYFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRL 118
P L A + V+++FHG +F SA S I V S+ + VS+ YR
Sbjct: 96 TRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRR 155
Query: 119 APEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXXXXXXVINNKEPWLLNHGDFE-RL 177
APEH P AY+D WTA +WV S +P++ + GD + R+
Sbjct: 156 APEHRYPCAYDDGWTALKWVMS------------------------QPFMRSGGDAQARV 191
Query: 178 FIGGDSAGGNIVHNIAMKAGEDDQESLLKEGTGVRILGAFLVHPFFWGSGPVGSESDVSD 237
F+ GDS+GGNI H++A++A ++ GV++ G L++ F G+ SE +
Sbjct: 192 FLSGDSSGGNIAHHVAVRAADE----------GVKVCGNILLNAMFGGTERTESERRLDG 241
Query: 238 NYDHKKRLEYLIWEFVYPTAPGGIDNPMINPVGSGKPSLAKLACSRMLVCVAGKDSLRDR 297
Y + W+ P D+P NP G L L ++ L+ V+G D DR
Sbjct: 242 KYFVTLQDRDWYWKAYLPE-DADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDR 300
Query: 298 GVLYVNA 304
+ Y +A
Sbjct: 301 QLAYADA 307
>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
Length = 313
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 47/258 (18%)
Query: 49 KDVTI-SQNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFIDHRYLNILVSQS 107
+D+TI + I AR+Y P+ + +L +VY+HG F S + DH L + S
Sbjct: 52 EDITIPGRGGPIRARVYRPRDGE---RLPAVVYYHGGGFVLGSVETH-DH-VCRRLANLS 106
Query: 108 QVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXXXXXXVINNKEPW 167
+ VS++YRLAPEH PAA ED + A +WVA +N +
Sbjct: 107 GAVVVSVDYRLAPEHKFPAAVEDAYDAAKWVA----------------------DNYDKL 144
Query: 168 LLNHGDFERLFIGGDSAGGNIVHNIAMKAGEDDQESLLKEGTGVRILGAFLVHPFFWGSG 227
+++G ++ + GDSAGGN+ A+ A D ES +K L++P +G
Sbjct: 145 GVDNG---KIAVAGDSAGGNLAAVTAIMA-RDRGESFVKY--------QVLIYPAVNLTG 192
Query: 228 -PVGSESDVSDNYDHKKRLEYLIW-EFVYPTAPGGIDNPMINPVGSGKPSLAKLACSRML 285
P S + S + + W Y + P +P +P+ + +L L
Sbjct: 193 SPTVSRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFADLSNLPP-----AL 247
Query: 286 VCVAGKDSLRDRGVLYVN 303
V A D LRD G LY +
Sbjct: 248 VITAEYDPLRDEGELYAH 265
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 75/160 (46%), Gaps = 36/160 (22%)
Query: 49 KDVTIS-QNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFIDHRYLNILVSQ- 106
+D TI +N I R+Y K P VLVY+HG F S S H L +++
Sbjct: 57 EDRTIKGRNGDIRVRVYQQKPDSP-----VLVYYHGGGFVICSIES---HDALCRRIARL 108
Query: 107 SQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXXXXXXVINNKEP 166
S VS++YRLAPEH PAA DC+ A +WVA N E
Sbjct: 109 SNSTVVSVDYRLAPEHKFPAAVYDCYDATKWVA----------------------ENAEE 146
Query: 167 WLLNHGDFERLFIGGDSAGGNIVHNIAMKAGEDDQESLLK 206
+ D ++F+GGDSAGGN+ +++ A D E +K
Sbjct: 147 LRI---DPSKIFVGGDSAGGNLAAAVSIMA-RDSGEDFIK 182
>pdb|2C7B|A Chain A, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
pdb|2C7B|B Chain B, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
Length = 311
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 110/268 (41%), Gaps = 69/268 (25%)
Query: 48 SKDVTIS-QNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFIDH--RYLNILV 104
++DV I +I AR+Y PK A L ++Y+HG F F S + DH R L+ L
Sbjct: 48 TRDVHIPVSGGSIRARVYFPKKAA---GLPAVLYYHGGGFVFGSIETH-DHICRRLSRL- 102
Query: 105 SQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXXXXXXVINNK 164
S + VS++YRLAPE+ P A ED + A +WVA +
Sbjct: 103 --SDSVVVSVDYRLAPEYKFPTAVEDAYAALKWVADRADELGV----------------- 143
Query: 165 EPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGEDDQESLLKEGTGVRILGA-FLVHPFF 223
D +R+ + GDSAGGN+ + S+L +G +++ L++P
Sbjct: 144 --------DPDRIAVAGDSAGGNLAAVV----------SILDRNSGEKLVKKQVLIYPVV 185
Query: 224 WGSG-PVGSESDVSDNYDHKKRLEYLIW---------EFVYPTAPGGIDNPMINPVGSGK 273
+G P S + +E +W E Y +P++ +G
Sbjct: 186 NXTGVPTASLVEFGVAETTSLPIELXVWFGRQYLKRPEEAYDFKA----SPLLADLGGLP 241
Query: 274 PSLAKLACSRMLVCVAGKDSLRDRGVLY 301
P+ LV A D LRD G LY
Sbjct: 242 PA---------LVVTAEYDPLRDEGELY 260
>pdb|3AIN|A Chain A, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|B Chain B, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|C Chain C, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|D Chain D, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 33/165 (20%)
Query: 37 TLDPDPQFGVSSKDVTI-SQNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFI 95
+L P + G +D+TI I AR+Y PK P+ VLVY+HG F S+
Sbjct: 55 SLTPREEVG-KIEDITIPGSETNIKARVYYPKTQGPY---GVLVYYHGGGFVLGDIESY- 109
Query: 96 DHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXX 155
+ + Q + +S++YRLAPE+ PAA D + A +W
Sbjct: 110 -DPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKW------------------ 150
Query: 156 XXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGEDD 200
V NN E + +G + +GGDSAGGN+ A+ + +++
Sbjct: 151 ----VYNNSEKFNGKYG----IAVGGDSAGGNLAAVTAILSKKEN 187
>pdb|3AIK|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIL|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
Length = 323
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 33/165 (20%)
Query: 37 TLDPDPQFGVSSKDVTI-SQNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFI 95
+L P + G +D+TI I AR+Y PK P+ VLVY+HG F S+
Sbjct: 55 SLTPREEVG-KIEDITIPGSETNIKARVYYPKTQGPY---GVLVYYHGGGFVLGDIESY- 109
Query: 96 DHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXX 155
+ + Q + +S++YRLAPE+ PAA D + A +W
Sbjct: 110 -DPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKW------------------ 150
Query: 156 XXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGEDD 200
V NN E + +G + +GGDSAGGN+ A+ + +++
Sbjct: 151 ----VYNNSEKFNGKYG----IAVGGDSAGGNLAAVTAILSKKEN 187
>pdb|3AIO|A Chain A, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|B Chain B, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|C Chain C, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|D Chain D, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 33/165 (20%)
Query: 37 TLDPDPQFGVSSKDVTI-SQNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFI 95
+L P + G +D+TI I AR+Y PK P+ VLVY+HG F S+
Sbjct: 55 SLTPREEVG-KIEDITIPGSETNIKARVYYPKTQGPY---GVLVYYHGGGFVLGDIESY- 109
Query: 96 DHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXX 155
+ + Q + +S++YRLAPE+ PAA D + A +W
Sbjct: 110 -DPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKW------------------ 150
Query: 156 XXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGEDD 200
V NN E + +G + +GGDSAGGN+ A+ + +++
Sbjct: 151 ----VYNNSEKFNGKYG----IAVGGDSAGGNLAAVTAILSKKEN 187
>pdb|3AIM|A Chain A, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|B Chain B, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|C Chain C, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|D Chain D, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 33/165 (20%)
Query: 37 TLDPDPQFGVSSKDVTI-SQNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFI 95
+L P + G +D+TI I AR+Y PK P+ VLVY+HG F S+
Sbjct: 55 SLTPREEVG-KIEDITIPGSETNIKARVYYPKTQGPY---GVLVYYHGGGFVLGDIESY- 109
Query: 96 DHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXX 155
+ + Q + +S++YRLAPE+ PAA D + A +W
Sbjct: 110 -DPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKW------------------ 150
Query: 156 XXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGEDD 200
V NN E + +G + +GGDSAGGN+ A+ + +++
Sbjct: 151 ----VYNNSEKFNGKYG----IAVGGDSAGGNLAAVTAILSKKEN 187
>pdb|2HM7|A Chain A, Crystal Structure Analysis Of The G84s Est2 Mutant
Length = 310
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 114/287 (39%), Gaps = 46/287 (16%)
Query: 20 YKDGSVERMMDSPYVPPTLDPDPQFGVSSKDVTISQNPAISARLYLPKLAQPHQKLTVLV 79
YK S ++ + P + +P V D+ + + R+Y P+ +P LV
Sbjct: 22 YKHLSAQQFRSQQSLFPPVKKEPVAEVREFDMDLPGR-TLKVRMYRPEGVEP--PYPALV 78
Query: 80 YFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVA 139
Y+HG ++ + +L + + S++YRLAPEH PAA ED + A QW+A
Sbjct: 79 YYHGGSWVVGDLETH--DPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIA 136
Query: 140 SHRNRXXXXXXXXXXXXXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGED 199
H D R+ +GGDSAGGN+ ++
Sbjct: 137 ERAADF-------------------------HLDPARIAVGGDSAGGNLAAVTSI----- 166
Query: 200 DQESLLKEGTGVRILGAFLVHPFFWGSGPVGSESDVSDNYDHKKRLEYLIWEF--VYPTA 257
L KE G + L++P G P + + +N + ++ F Y +
Sbjct: 167 ----LAKERGGPALAFQLLIYPST-GYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNS 221
Query: 258 PGGIDNPMINPVGSGKPSLAKLACSRMLVCVAGKDSLRDRGVLYVNA 304
+ +P +PV P L+ L + + A D LRD G LY A
Sbjct: 222 LEELTHPWFSPVLY--PDLSGLPPA--YIATAQYDPLRDVGKLYAEA 264
>pdb|1QZ3|A Chain A, Crystal Structure Of Mutant M211sR215L OF CARBOXYLESTERASE
Est2 Complexed With Hexadecanesulfonate
pdb|1U4N|A Chain A, Crystal Structure Analysis Of The M211sR215L EST2 MUTANT
Length = 310
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 46/287 (16%)
Query: 20 YKDGSVERMMDSPYVPPTLDPDPQFGVSSKDVTISQNPAISARLYLPKLAQPHQKLTVLV 79
YK S ++ + P + +P V D+ + + R+Y P+ +P LV
Sbjct: 22 YKHLSAQQFRSQQSLFPPVKKEPVAEVREFDMDLPGR-TLKVRMYRPEGVEP--PYPALV 78
Query: 80 YFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVA 139
Y+HG + + +L + + S++YRLAPEH PAA ED + A QW+A
Sbjct: 79 YYHGGGWVVGDLETH--DPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIA 136
Query: 140 SHRNRXXXXXXXXXXXXXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGED 199
H D R+ +GGDSAGGN+ ++
Sbjct: 137 ERAADF-------------------------HLDPARIAVGGDSAGGNLAAVTSI----- 166
Query: 200 DQESLLKEGTGVRILGAFLVHPFFWGSGPVGSESDVSDNYDHKKRLEYLIWEFV--YPTA 257
L KE G + L++P G P + + +N + + F+ Y +
Sbjct: 167 ----LAKERGGPALAFQLLIYPST-GYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNS 221
Query: 258 PGGIDNPMINPVGSGKPSLAKLACSRMLVCVAGKDSLRDRGVLYVNA 304
+ +P +PV P L+ L + + A D LRD G LY A
Sbjct: 222 LEELTHPWFSPVLY--PDLSGLPPA--YIATAQYDPLRDVGKLYAEA 264
>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
Est2 From Alicyclobacillus Acidocaldarius
Length = 310
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 111/296 (37%), Gaps = 64/296 (21%)
Query: 20 YKDGSVERMMDSPYVPPTLDPDPQFGVSSKDVTISQNPAISARLYLPKLAQPHQKLTVLV 79
YK S ++ + P + +P V D + + R Y P+ +P LV
Sbjct: 22 YKHLSAQQFRSQQSLFPPVKKEPVAEVREFDXDLPGR-TLKVRXYRPEGVEP--PYPALV 78
Query: 80 YFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQWVA 139
Y+HG + + +L + + S++YRLAPEH PAA ED + A QW+A
Sbjct: 79 YYHGGGWVVGDLETH--DPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIA 136
Query: 140 SHRNRXXXXXXXXXXXXXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGED 199
H D R+ +GGDSAGGN+ ++
Sbjct: 137 ERAADF-------------------------HLDPARIAVGGDSAGGNLAAVTSI----- 166
Query: 200 DQESLLKEGTGVRILGAFLVHPFFWGSGPVGSESDVSDNYDHKK---------RLEYL-- 248
L KE G + L++P G P + + +N + R +YL
Sbjct: 167 ----LAKERGGPALAFQLLIYPST-GYDPAHPPASIEENAEGYLLTGGXXLWFRDQYLNS 221
Query: 249 IWEFVYPTAPGGIDNPMINPVGSGKPSLAKLACSRMLVCVAGKDSLRDRGVLYVNA 304
+ E +P +P++ P SG P + A D LRD G LY A
Sbjct: 222 LEELTHPWF-----SPVLYPDLSGLPP--------AYIATAQYDPLRDVGKLYAEA 264
>pdb|3DNM|A Chain A, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|B Chain B, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|C Chain C, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|D Chain D, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
Length = 336
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 33/123 (26%)
Query: 78 LVYFHGSAFCFESAFSFIDHRYLNI-LVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQ 136
++YFHG + S + H L L QS S++YRLAPE+ PAA +DC A++
Sbjct: 97 ILYFHGGGYISGSPST---HLVLTTQLAKQSSATLWSLDYRLAPENPFPAAVDDCVAAYR 153
Query: 137 WVASHRNRXXXXXXXXXXXXXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKA 196
+ L G +R+ I GDSAGG + +KA
Sbjct: 154 AL-----------------------------LKTAGSADRIIIAGDSAGGGLTTASMLKA 184
Query: 197 GED 199
ED
Sbjct: 185 KED 187
>pdb|3K6K|A Chain A, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|B Chain B, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|C Chain C, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|D Chain D, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
Length = 322
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 33/123 (26%)
Query: 78 LVYFHGSAFCFESAFSFIDHRYLNI-LVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQ 136
++YFHG + S + H L L QS S++YRLAPE+ PAA +DC A++
Sbjct: 83 ILYFHGGGYISGSPST---HLVLTTQLAKQSSATLWSLDYRLAPENPFPAAVDDCVAAYR 139
Query: 137 WVASHRNRXXXXXXXXXXXXXXXVINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKA 196
+ L G +R+ I GDSAGG + +KA
Sbjct: 140 AL-----------------------------LKTAGSADRIIIAGDSAGGGLTTASMLKA 170
Query: 197 GED 199
ED
Sbjct: 171 KED 173
>pdb|3FAK|A Chain A, Structural And Functional Analysis Of A Hormone-Sensitive
Lipase Like Este5 From A Metagenome Library
pdb|3G9T|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Butyrate For 5sec
pdb|3G9U|A Chain A, Crystal Structure Of Este5, Was Soaked By P-nitrophenyl
Butyrate For 5min
pdb|3G9Z|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Caprylate
pdb|3H17|A Chain A, Crystal Structure Of Este5-Pmsf (I)
pdb|3H18|A Chain A, Crystal Structure Of Este5-pmsf (ii)
pdb|3H19|A Chain A, Crystal Structure Of Este5, Was Soaked By Methyl Alcohol
pdb|3H1A|A Chain A, Crystal Structure Of Este5, Was Soaked By Ethyl Alcohol
pdb|3H1B|A Chain A, Crystal Structure Of Este5, Was Soaked By Isopropyl
Alcohol
pdb|3L1H|A Chain A, Crystal Structure Of Este5, Was Soaked By Fecl3
pdb|3L1I|A Chain A, Crystal Structure Of Este5, Was Soaked By Cuso4
pdb|3L1J|A Chain A, Crystal Structure Of Este5, Was Soaked By Znso4
Length = 322
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 73 QKLTVLVYFHGSAFCFESAFSFIDHRYLNILVSQ-SQVLAVSIEYRLAPEHLLPAAYEDC 131
Q ++Y HG + S + HR + +S+ SQ A+ ++YRLAPEH PAA ED
Sbjct: 78 QAGKAILYLHGGGYVMGSINT---HRSMVGEISRASQAAALLLDYRLAPEHPFPAAVEDG 134
Query: 132 WTAFQWVASHRNRXXXXXXXXXXXXXXXVINNKEPWLLNHG-DFERLFIGGDSAGGNIVH 190
VA++R WLL+ G + L I GDSAGG +V
Sbjct: 135 ------VAAYR------------------------WLLDQGFKPQHLSISGDSAGGGLVL 164
Query: 191 NIAMKA 196
+ + A
Sbjct: 165 AVLVSA 170
>pdb|3V9A|A Chain A, Crystal Structure Of EsteraseLIPASE FROM UNCULTURED
BACTERIUM
Length = 309
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 73 QKLTVLVYFHGSAFCFESAFSFIDHRYLNILVSQ-SQVLAVSIEYRLAPEHLLPAAYEDC 131
Q ++Y HG + S + HR + +S+ SQ A+ ++YRLAPEH PAA ED
Sbjct: 65 QAGKAILYLHGGGYVMGSINT---HRSMVGEISRASQAAALLLDYRLAPEHPFPAAVEDG 121
Query: 132 WTAFQWVASHRNRXXXXXXXXXXXXXXXVINNKEPWLLNHG-DFERLFIGGDSAGGNIVH 190
VA++R WLL+ G + L I GDSAGG +V
Sbjct: 122 ------VAAYR------------------------WLLDQGFKPQHLSISGDSAGGGLVL 151
Query: 191 NIAMKA 196
+ + A
Sbjct: 152 AVLVSA 157
>pdb|3QH4|A Chain A, Crystal Structure Of Esterase Lipw From Mycobacterium
Marinum
Length = 317
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 77 VLVYFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQ 136
V+VY H F + + DHR L +++ VS++YRLAPEH PAA D
Sbjct: 87 VVVYCHAGGFALGNLDT--DHRQCLELARRARCAVVSVDYRLAPEHPYPAALHDAIEVLT 144
Query: 137 WVASHRNR 144
WV + R
Sbjct: 145 WVVGNATR 152
>pdb|1LZK|A Chain A, Bacterial Heroin Esterase Complex With Transition State
Analog Dimethylarsenic Acid
Length = 323
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 36/160 (22%)
Query: 45 GVSSKDVT---ISQNPAISARLYLP-KLAQPHQKLTVLVYFHGSAFCFESAFSFIDHRYL 100
GVS ++++ + +P + R P A P + VL++ HG F +A S
Sbjct: 48 GVSLRELSAPGLDGDPEVKIRFVTPDNTAGP---VPVLLWIHGGGFAIGTAES---SDPF 101
Query: 101 NILVSQSQVLAVS-IEYRLAPEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXXXXXX 159
+ V++ AV+ +EYRLAPE P DC+ A ++ +H
Sbjct: 102 CVEVARELGFAVANVEYRLAPETTFPGPVNDCYAALLYIHAHAEELGI------------ 149
Query: 160 VINNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGED 199
D R+ +GG SAGG + +KA ++
Sbjct: 150 -------------DPSRIAVGGQSAGGGLAAGTVLKARDE 176
>pdb|1LZL|A Chain A, Bacterial Heroin Esterase
Length = 323
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 34/159 (21%)
Query: 45 GVSSKDVT---ISQNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFIDHRYLN 101
GVS ++++ + +P + R P + VL++ HG F +A S
Sbjct: 48 GVSLRELSAPGLDGDPEVKIRFVTPD--NTAGPVPVLLWIHGGGFAIGTAES---SDPFC 102
Query: 102 ILVSQSQVLAVS-IEYRLAPEHLLPAAYEDCWTAFQWVASHRNRXXXXXXXXXXXXXXXV 160
+ V++ AV+ +EYRLAPE P DC+ A ++ +H
Sbjct: 103 VEVARELGFAVANVEYRLAPETTFPGPVNDCYAALLYIHAHAEELGI------------- 149
Query: 161 INNKEPWLLNHGDFERLFIGGDSAGGNIVHNIAMKAGED 199
D R+ +GG SAGG + +KA ++
Sbjct: 150 ------------DPSRIAVGGQSAGGGLAAGTVLKARDE 176
>pdb|1JKM|B Chain B, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
pdb|1JKM|A Chain A, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
Length = 361
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 78 LVYFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLA----PEHLLPAAYEDCWT 133
LVY HG + + + R+ L + V+ V +++R A H P+ EDC
Sbjct: 112 LVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVV-VMVDFRNAWTAEGHHPFPSGVEDCLA 170
Query: 134 AFQWVASHRN 143
A WV HR
Sbjct: 171 AVLWVDEHRE 180
>pdb|3H04|A Chain A, The Crystal Structure Of The Protein With Unknown Function
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 275
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 77 VLVYFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLAPEHLLPAAYEDCWTAFQ 136
V+VY HG F A + + +Y++IL ++ +S YRL PE L ED + +F
Sbjct: 31 VIVYIHGGGLMFGKA-NDLSPQYIDILTEHYDLIQLS--YRLLPEVSLDCIIEDVYASFD 87
Query: 137 WVASH 141
+ S
Sbjct: 88 AIQSQ 92
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 33 YVPPTLDPDPQFGVSSKDVTISQNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAF 92
Y P P +S K++ + ++ P P Q L V+V+ HG AF +
Sbjct: 57 YGPVCPQPSDLLSLSYKELPRQSEDCLYVNVFAPD--TPSQNLPVMVWIHGGAFYLGAGS 114
Query: 93 SFIDHRYLNILVSQSQVLAVSIEYRLAP 120
+ + L +Q +V+ V++ YRL P
Sbjct: 115 EPLYDG--SKLAAQGEVIVVTLNYRLGP 140
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 71 PHQKLTVLVYFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLAP 120
P Q L V+V+ HG AF + + + L +Q +V+ V++ YRL P
Sbjct: 93 PSQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGP 140
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 71 PHQKLTVLVYFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRLAP 120
P Q L V+V+ HG AF + + + L +Q +V+ V++ YRL P
Sbjct: 93 PSQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGP 140
>pdb|3GA7|A Chain A, 1.55 Angstrom Crystal Structure Of An Acetyl Esterase From
Salmonella Typhimurium
Length = 326
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 59 ISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFIDHRYLNILVSQSQVLAVSIEYRL 118
++ RLY P QP + T L Y HG F + + R +L + + I+Y L
Sbjct: 75 VTTRLYSP---QPTSQAT-LYYLHGGGFILGNLDTH--DRIXRLLARYTGCTVIGIDYSL 128
Query: 119 APEHLLPAAYEDCWTAFQWVASH 141
+P+ P A E+ + + H
Sbjct: 129 SPQARYPQAIEETVAVCSYFSQH 151
>pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1GKL|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1WB4|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Sinapinate
pdb|1WB4|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Sinapinate
pdb|1WB5|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Syringate
pdb|1WB5|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Syringate
pdb|1WB6|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Vanillate
pdb|1WB6|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Vanillate
Length = 297
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 38 LDPDPQFGVSSKDVTISQNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFS---- 93
L+P PQ G K+ N S +YLP P++K + HG + FS
Sbjct: 32 LNPCPQAGRIVKETYTGINGTKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVK 91
Query: 94 ---FIDHRYLN 101
+DH +N
Sbjct: 92 LQNILDHAIMN 102
>pdb|3C7A|A Chain A, A Structural Basis For Substrate And Stereo Selectivity In
Octopine Dehydrogenase (Odh-Nadh)
pdb|3C7D|B Chain B, A Structural Basis For Substrate And Stereo Selectivity In
Octopine Dehydrogenase (Odh-Nadh-Pyruvate)
pdb|3C7C|B Chain B, A Structural Basis For Substrate And Stereo Selectivity In
Octopine Dehydrogenase (Odh-Nadh-L-Arginine)
Length = 404
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 6 NKEVAKELLPLIRVYKDGSVERMMDSPYVPPTLDPDPQFGVSSKDVTISQNPAISARLYL 65
K + + L +I KDG+ + P V + DP+ +S DV I PA + Y
Sbjct: 43 TKALGADELTVIVNEKDGTQTEVKSRPKV---ITKDPEIAISGADVVILTVPAFAHEGYF 99
Query: 66 PKLAQPHQKLTVLVYFHGSAFCFE 89
+A P+ + + L+ S FE
Sbjct: 100 QAMA-PYVQDSALIVGLPSQAGFE 122
>pdb|3IQD|B Chain B, Structure Of Octopine-Dehydrogenase In Complex With Nadh
And Agmatine
Length = 404
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 6 NKEVAKELLPLIRVYKDGSVERMMDSPYVPPTLDPDPQFGVSSKDVTISQNPAISARLYL 65
K + + L +I KDG+ + P V + DP+ +S DV I PA + Y
Sbjct: 43 TKALGADELTVIVNEKDGTQTEVKSRPKV---ITKDPEIAISGADVVILTVPAFAHEGYF 99
Query: 66 PKLAQPHQKLTVLVYFHGSAFCFE 89
+A P+ + + L+ S FE
Sbjct: 100 QAMA-PYVQDSALIVGLPSQAGFE 122
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 225 GSGPVGSE-SDVSDNYDHKKRLEYLIWEFVYPTAPGGIDNPMINPVGSGKPSLAKLACSR 283
G P+ SE +D D+ D LEY W+F + G +D P+I + G CS
Sbjct: 32 GHIPLRSEDADEQDSSD----LEYFFWKFTNNDSNGNVDRPLIIWLNGGP------GCSS 81
Query: 284 M--LVCVAGKDSLRDRGVLYVN 303
M + +G + G LY+N
Sbjct: 82 MDGALVESGPFRVNSDGKLYLN 103
>pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|1GKK|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|4H35|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum Before Exposure To 266nm Uv Laser
pdb|4H35|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum Before Exposure To 266nm Uv Laser
Length = 297
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 38 LDPDPQFGVSSKDVTISQNPAISARLYLPKLAQPHQKLTVLVYFHGSAFCFESAFSFIDH 97
L+P PQ G K+ N S +YLP P++K + HG + FS D
Sbjct: 32 LNPCPQAGRIVKETYTGINGTKSLNVYLPYGYDPNKKYNIFYLXHGGGENENTIFS-NDV 90
Query: 98 RYLNIL 103
+ NIL
Sbjct: 91 KLQNIL 96
>pdb|2FJ0|A Chain A, Crystal Structure Of Juvenile Hormone Esterase From
Manduca Sexta, With Otfp Covalently Attached
Length = 551
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 20/98 (20%)
Query: 58 AISARLYLPKLAQPHQK--------LTVLVYFHGSAFCFESAFSFIDHRYLNILVSQSQV 109
I A +++P A P L VLV+ HG F F S S D LVS+ V
Sbjct: 90 CIHANIHVPYYALPRDAADKNRFAGLPVLVFIHGGGFAFGSGDS--DLHGPEYLVSK-DV 146
Query: 110 LAVSIEYRLAPEHLLP---------AAYEDCWTAFQWV 138
+ ++ YRL L A D T +WV
Sbjct: 147 IVITFNYRLNVYGFLSLNSTSVPGNAGLRDMVTLLKWV 184
>pdb|1P85|A Chain A, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P86|A Chain A, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2I2T|C Chain C, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2V|C Chain C, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOV|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The First 70s Ribosome.
The Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|2QOX|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOZ|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
First 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QP1|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QAM|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAO|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBA|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBC|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBE|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBG|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBI|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The First 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBK|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The Second 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4L|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2Z4N|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2RDO|C Chain C, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|3J01|6 Chain 6, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3J0T|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
Length = 272
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 186 GNIVHNIAMKAGEDDQESLLKEGTGVRIL---GAFLVHPFFWGSGPVGS-ESDVSDNYDH 241
G+ VHN+ MK G+ Q + GT V+I+ GA++ SG + E+D
Sbjct: 137 GSTVHNVEMKPGKGGQLAR-SAGTYVQIVARDGAYVT--LRLRSGEMRKVEADCRATLGE 193
Query: 242 KKRLEYLI----------WEFVYPTAPGGIDNPMINPVGSGK 273
E+++ W V PT G NP+ +P G G+
Sbjct: 194 VGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGE 235
>pdb|2AW4|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AWB|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|1VS6|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS8|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2VHM|C Chain C, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 1 Of 4)
pdb|2VHN|C Chain C, Structure Of Pdf Binding Helix In Complex With The
Ribosome. (Part 2 Of 4)
pdb|3DF2|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The First 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3DF4|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The Second 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3BBX|C Chain C, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em
Map 50s.Nc-Trna.Hsp15 Complex
pdb|3I1N|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1P|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1R|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1T|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I20|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I22|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KCR|6 Chain 6, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
In Pdb Entry 3kc4
pdb|1VT2|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3ORB|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The First
70s Ribosome Bound To Cem-101.
pdb|3IZT|D Chain D, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|D Chain D, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3SGF|C Chain C, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOS|C Chain C, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAR|C Chain C, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAU|C Chain C, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 273
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 186 GNIVHNIAMKAGEDDQESLLKEGTGVRIL---GAFLVHPFFWGSGPVGS-ESDVSDNYDH 241
G+ VHN+ MK G+ Q + GT V+I+ GA++ SG + E+D
Sbjct: 138 GSTVHNVEMKPGKGGQLAR-SAGTYVQIVARDGAYVT--LRLRSGEMRKVEADCRATLGE 194
Query: 242 KKRLEYLI----------WEFVYPTAPGGIDNPMINPVGSGK 273
E+++ W V PT G NP+ +P G G+
Sbjct: 195 VGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGE 236
>pdb|3FIK|C Chain C, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|2WWQ|C Chain C, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|3OFQ|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OFR|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Erthromycin Bound.
pdb|3OFC|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The First 70s Ribosome With Chloramphenicol Bound.
pdb|3OFD|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OFZ|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Clindamycin.
pdb|3OG0|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAS|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAT|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Telithromycin Bound.
pdb|3R8S|C Chain C, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3R8T|C Chain C, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3J19|C Chain C, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(50s Subunit)
Length = 271
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 186 GNIVHNIAMKAGEDDQESLLKEGTGVRIL---GAFLVHPFFWGSGPVGS-ESDVSDNYDH 241
G+ VHN+ MK G+ Q + GT V+I+ GA++ SG + E+D
Sbjct: 137 GSTVHNVEMKPGKGGQLAR-SAGTYVQIVARDGAYVT--LRLRSGEMRKVEADCRATLGE 193
Query: 242 KKRLEYLI----------WEFVYPTAPGGIDNPMINPVGSGK 273
E+++ W V PT G NP+ +P G G+
Sbjct: 194 VGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGE 235
>pdb|3E1B|N Chain N, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|N Chain N, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
Length = 270
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 186 GNIVHNIAMKAGEDDQESLLKEGTGVRIL---GAFLVHPFFWGSGPVGS-ESDVSDNYDH 241
G+ VHN+ MK G+ Q + GT V+I+ GA++ SG + E+D
Sbjct: 138 GSTVHNVEMKPGKGGQLAR-SAGTYVQIVARDGAYVT--LRLRSGEMRKVEADCRATLGE 194
Query: 242 KKRLEYLI----------WEFVYPTAPGGIDNPMINPVGSGK 273
E+++ W V PT G NP+ +P G G+
Sbjct: 195 VGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGE 236
>pdb|2J28|C Chain C, Model Of E. Coli Srp Bound To 70s Rncs
Length = 267
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 186 GNIVHNIAMKAGEDDQESLLKEGTGVRIL---GAFLVHPFFWGSGPVGS-ESDVSDNYDH 241
G+ VHN+ MK G+ Q + GT V+I+ GA++ SG + E+D
Sbjct: 135 GSTVHNVEMKPGKGGQLAR-SAGTYVQIVARDGAYVT--LRLRSGEMRKVEADCRATLGE 191
Query: 242 KKRLEYLI----------WEFVYPTAPGGIDNPMINPVGSGK 273
E+++ W V PT G NP+ +P G G+
Sbjct: 192 VGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGE 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,972,289
Number of Sequences: 62578
Number of extensions: 402854
Number of successful extensions: 754
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 54
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)