BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018916
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 149/290 (51%), Gaps = 19/290 (6%)
Query: 21 KDNLIKTSHGSLSVTIYG--DQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCI 78
K + ++T +GS++ T+YG +PA++TY D+ LNY SCFQ LF E ++ NF
Sbjct: 2 KTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVR 60
Query: 79 YHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAM 138
H++ PG E GA S+D LAD I VL + ++ +GV AGAYIL +A+
Sbjct: 61 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYAL 120
Query: 139 KYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKQEVRGN 198
+ V GL+L++ A W +W +K+ G+ + E++L FS++E+ GN
Sbjct: 121 NHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN 173
Query: 199 AQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESS 254
S+++Q R ++ + N+ ++ + N R D++ G L+C ++ VG+ +
Sbjct: 174 -----SELIQKYRNIITHAPNLDNIENYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQA 228
Query: 255 PFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 304
P V SK+D ++ +++ G QP + +YFL G G
Sbjct: 229 PHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 278
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 148/290 (51%), Gaps = 19/290 (6%)
Query: 21 KDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCI 78
K + ++T +GS++ T+YG +PA++TY D+ LNY SCFQ LF E ++ NF
Sbjct: 2 KTHSVETPYGSVTFTVYGTPAPARPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVR 60
Query: 79 YHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAM 138
H++ PG E GA S+D LAD I VL + ++ +GV AGAYIL +A+
Sbjct: 61 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYAL 120
Query: 139 KYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKQEVRGN 198
+ V GL+L++ A W +W +K+ G+ + E++L FS++E+ GN
Sbjct: 121 NHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN 173
Query: 199 AQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESS 254
S+++Q R ++ + N+ + + N R D++ G L+C ++ VG+ +
Sbjct: 174 -----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQA 228
Query: 255 PFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 304
P V SK+D ++ +++ G QP + +YFL G G
Sbjct: 229 PHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 278
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 148/290 (51%), Gaps = 19/290 (6%)
Query: 21 KDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCI 78
K + ++T +GS++ T+YG +PA++TY D+ LNY SCFQ LF E ++ NF
Sbjct: 2 KTHSVETPYGSVTFTVYGTPYPYRPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVR 60
Query: 79 YHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAM 138
H++ PG E GA S+D LAD I VL + ++ +GV AGAYIL +A+
Sbjct: 61 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYAL 120
Query: 139 KYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKQEVRGN 198
+ V GL+L++ A W +W +K+ G+ + E++L FS++E+ GN
Sbjct: 121 NHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN 173
Query: 199 AQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESS 254
S+++Q R ++ + N+ + + N R D++ G L+C ++ VG+ +
Sbjct: 174 -----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQA 228
Query: 255 PFHSEAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYG 304
P V SK+D ++ +++ G QP + +YFL G G
Sbjct: 229 PHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 278
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 145/284 (51%), Gaps = 19/284 (6%)
Query: 25 IKTSHGSLSVTIYG--DQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHIN 82
++T +GS++ T+YG +PA+ TY D+ LNY SCFQ LF + ++ NF H++
Sbjct: 16 VETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEII-QNFVRVHVD 74
Query: 83 PPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRH 142
PG E GA S+D LAD I +L + ++ +GV AGAYIL+ +A+ +
Sbjct: 75 APGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPD 134
Query: 143 RVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKQEVRGNAQVP 202
V GL+L++ A W +W +K+ G+ + +++L FS++E+ GN
Sbjct: 135 TVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPDMILGHLFSQEELSGN---- 183
Query: 203 ESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHS 258
S+++Q R ++ + N+ + + N R D++ G L+C ++ VG+ +P
Sbjct: 184 -SELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED 242
Query: 259 EAVHMTSKIDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMG 302
V SK+D ++ +++ G QP + +YFL G
Sbjct: 243 AVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQG 286
>pdb|2A2J|A Chain A, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
pdb|2A2J|B Chain B, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
Length = 246
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 31 SLSVTIYGDQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGA 90
L+VT Y A T+P L + QG P + F + + P G + GA
Sbjct: 121 QLAVTPY------ASATFPWYQLGRQAHVQG----PVSKVSTEEIFTYWSMRPRGAQLGA 170
Query: 91 AAISDDEPVLSVDDLADQIAEVLNHF 116
A PV S L +Q+AEV F
Sbjct: 171 WASQQSRPVGSRAQLDNQLAEVTRRF 196
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 101 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPL 153
S+D AD A +L+ G+ +G A +L F KY RV+ + P+
Sbjct: 81 SLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 133
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 57 SCFQGLFFCPEACS---LLLH-------NFCIYHINPPGHEFGAAAISDDEPVL-SVDDL 105
SCF+ PEACS +++H YH + GH FGA A DE L S +L
Sbjct: 72 SCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGEL 131
Query: 106 ADQIAEVLNHFGLGAVMCMGVTAGA 130
Q V + G + V G+
Sbjct: 132 ELQFRRVKCKYPEGTKVTFHVEKGS 156
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 101 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPL 153
S LA +L G+ +G + G + T +A+ Y +V L+LV+P+
Sbjct: 96 SFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPI 148
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 116 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 157
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 116 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 157
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 116 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 157
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 116 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 157
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 116 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 157
FG V MG + G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 162 WLYNKVMSNLLYYYGMCGVVKELLLKRYFSKQEVRGNAQVPESDIVQACRRL----LDER 217
W Y+ + + L YY GVV +L ++ F + +GN V D RL L +R
Sbjct: 41 WGYDXIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDXTAPIARLVASSLKDR 100
Query: 218 Q-------SSNVWHFLEAINGRP 233
SNV+ + G+P
Sbjct: 101 AYPLRLAYQSNVYRAQQNEGGKP 123
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 116 FGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAP 157
FG V MG G + +A+KY+ + GLI+ L P
Sbjct: 94 FGNEKVFLMGSAYGGALALAYAVKYQDHLKGLIVSGGLSSVP 135
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|2QMW|B Chain B, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 267
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 172 LYYYGMCGVVKELLLKRYFSKQEVRGNAQVPESDIVQACRRLLDERQSSNVWHFLEAING 231
LYY G G L ++YFS+ E P+S++ + + + D+ S V +I G
Sbjct: 6 LYYLGPKGTFSYLACRQYFSENEATFQ---PKSNLFEVIKAVADDDTSIGVVPIENSIEG 62
Query: 232 RPDI 235
+I
Sbjct: 63 TINI 66
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 85 GHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRV 144
GHE A I+ D + D+ Q N +G GA G GA + A R RV
Sbjct: 509 GHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERV 568
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,562,138
Number of Sequences: 62578
Number of extensions: 427533
Number of successful extensions: 892
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 17
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)