BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018917
         (349 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XC3|A Chain A, Structure Of A Putative Fructokinase From Bacillus
           Subtilis
          Length = 302

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 134 AELLEAIPKPFLS-LHLRFEPDMVAYSQCEYQG---LSPTSMQAIEAARGDRKPWTGEVA 189
             LL+ +  P +  +++R  PD V   +C Y G       S  AIEA  G +     ++A
Sbjct: 143 GRLLQGLSHPEMGHIYIRRHPDDVYQGKCPYHGDCFEGLASGPAIEARWGKKAADLSDIA 202

Query: 190 HIWRRRG 196
            +W   G
Sbjct: 203 QVWELEG 209


>pdb|3LM9|A Chain A, Crystal Structure Of Fructokinase With Adp And Fructose
           Bound In The Active Site
          Length = 302

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 134 AELLEAIPKPFLS-LHLRFEPDMVAYSQCEYQG---LSPTSMQAIEAARGDRKPWTGEVA 189
             LL+ +  P    +++R  PD V   +C Y G       S  AIEA  G +     ++A
Sbjct: 143 GRLLQGLSHPEXGHIYIRRHPDDVYQGKCPYHGDCFEGLASGPAIEARWGKKAADLSDIA 202

Query: 190 HIWRRRG 196
            +W   G
Sbjct: 203 QVWELEG 209


>pdb|1XT9|A Chain A, Crystal Structure Of Den1 In Complex With Nedd8
          Length = 212

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 197 KCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLT 235
           KC   P E A+ L+ L +P    ++LA  D   +  G T
Sbjct: 63  KCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGT 101


>pdb|2BKQ|A Chain A, Nedd8 Protease
 pdb|2BKQ|B Chain B, Nedd8 Protease
 pdb|2BKQ|C Chain C, Nedd8 Protease
 pdb|2BKQ|D Chain D, Nedd8 Protease
 pdb|2BKR|A Chain A, Nedd8 Nedp1 Complex
          Length = 212

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 197 KCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEG 233
           KC   P E A+ L+ L +P    ++LA  D   +  G
Sbjct: 63  KCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAG 99


>pdb|3LUI|A Chain A, Crystal Structure Of The Snx17 Px Domain With Bound
           Sulphate
 pdb|3LUI|B Chain B, Crystal Structure Of The Snx17 Px Domain With Bound
           Sulphate
 pdb|3LUI|C Chain C, Crystal Structure Of The Snx17 Px Domain With Bound
           Sulphate
          Length = 115

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 79  DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKA 113
           +Y  +VLPA    K  SLTPA + QRR++  ++ +A
Sbjct: 53  EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQA 88


>pdb|3FOG|A Chain A, Crystal Structure Of The Px Domain Of Sorting Nexin-17
           (Snx17)
          Length = 115

 Score = 28.1 bits (61), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 79  DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKA 113
           +Y  +VLPA    K  SLTPA + QRR++  ++ +A
Sbjct: 50  EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQA 85


>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
           3,4,5-Trimethoxy Aniline Containing Pyrimidine
          Length = 309

 Score = 27.7 bits (60), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 280 FGNMDKMVAAMR----AFKGLYKTLFLSRKAFAEFTYQGLEGKELMQALWKVHRD 330
           FGN+   + + R     +K LYK  FL+ +    +++Q  +G E + +   +HRD
Sbjct: 116 FGNLSTYLRSKRNEFVPYKDLYKD-FLTLEHLIXYSFQVAKGMEFLASRKXIHRD 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,976,753
Number of Sequences: 62578
Number of extensions: 394110
Number of successful extensions: 975
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 14
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)