BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018917
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 181/374 (48%), Gaps = 31/374 (8%)
Query: 3 FCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEIS 62
C+ V A ++NATLVLP+ + ++W++ S F I++ ++FI+ + VK+V ++P
Sbjct: 107 ICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHK 166
Query: 63 SKEPFHVDCSKRKGQFD-----YVESVLPALLEHKYISLTP---AMSQRRDRYPRFAKAA 114
+ + + + + D Y+ + L A+ EH I LTP +++ D P + +
Sbjct: 167 NGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDN-PEYQRLR 225
Query: 115 LCQACYSALRLTRSLQKKAAELLEAIPKP--FLSLHLRFEPDMVAYSQCEYQGLSPTSMQ 172
C+ Y ALR + K + +++ + F+S+HLRFE DM+A++ C + +P +
Sbjct: 226 -CRVNYHALRFKPHIMKLSESIVDKLRSQGHFMSIHLRFEMDMLAFAGC-FDIFNPEEQK 283
Query: 173 AIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD---GLM 229
+ R + + + R GKCPLTP E LIL+A+ +T IYLAAG+ G
Sbjct: 284 ILRKYRKENFADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQ 343
Query: 230 EIEGLTSVYTNVVTKSALRTGEDFTRM-HGNTKAALDYYVSINSDSYMATYFG--NMDKM 286
++ +++ + S++ E+ + G +A+DY V + SD +M TY G N
Sbjct: 344 FMKPFRTLFPRLDNHSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANN 403
Query: 287 VAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKE--LMQALWKVHRDDFLMGR-------- 336
+ R + G T+ RKA A +GK +A+ +V G
Sbjct: 404 LLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPES 463
Query: 337 --GSALPDCFCEFE 348
++ P+CFC+
Sbjct: 464 FYTNSWPECFCQMN 477
>sp|B3PGJ1|AGAL_CELJU Alpha-galactosidase A OS=Cellvibrio japonicus (strain Ueda107)
GN=agaA PE=1 SV=1
Length = 404
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 67/194 (34%), Gaps = 45/194 (23%)
Query: 154 DMVAYSQCEYQGLSPTSMQAI------EAAR---------GDRKPW--TGEVAHIWRRRG 196
D V Y C+ Q ++P S A +A R GD +PW +V H WR G
Sbjct: 147 DYVKYDWCDTQDINPKSAYATMRDAIHKAGRPMLFSICEWGDNQPWEWAQDVGHSWRTTG 206
Query: 197 KC-------------------PLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSV 237
P+ + L A N + G+G+ E E
Sbjct: 207 DIYPCWNCEHNHGSWSSFGVLPILDKQAGLRKYAGPGHWNDMDMMEVGNGMTEEEDRAHF 266
Query: 238 YTNVVTKSALRTGEDFTRMHGNTKAALDY--YVSINSDSYMATYF-----GNMDKMVAAM 290
S L G D M T+A L + ++IN D G+++ + +
Sbjct: 267 SLWAFMASPLIAGNDLRNMSDTTRAILTHKETIAINQDKLGIQAMKWIDEGDLEIYIKPL 326
Query: 291 RAFKGLYKTLFLSR 304
KG Y LFL+R
Sbjct: 327 E--KGHYAVLFLNR 338
>sp|Q5RID7|SNX17_DANRE Sorting nexin-17 OS=Danio rerio GN=snx17 PE=2 SV=1
Length = 473
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 79 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 137
+Y +V+PA K +LTPA + QRR++ ++ +A + + S +KA +
Sbjct: 49 EYGNNVVPAFPPKKIFTLTPAEVDQRREQLEKYMQAVRQDPILGSSEMFNSFLRKAQQET 108
Query: 138 EAIPKPFLSLHL 149
+ IP + L +
Sbjct: 109 QQIPTEEVQLEI 120
>sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA
PE=3 SV=1
Length = 226
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 28/105 (26%)
Query: 162 EYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIP--TNT- 218
E QG++ M K + E HIWRR P E+ + A +IP NT
Sbjct: 117 ELQGINKEEMA---------KKYGAEQVHIWRRSFDVPPPNGESLQMTAARTIPYFENTI 167
Query: 219 --------NIYLAA-GDGL----MEIEGLTSVYTNVVTKSALRTG 250
NI++AA G+ L M+++GLT T+ V K L TG
Sbjct: 168 VPHLKEKKNIFIAAHGNSLRSIIMKLDGLT---TDQVVKLELATG 209
>sp|O74728|YH93_SCHPO Uncharacterized endoplasmic reticulum membrane protein C1709.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1709.03 PE=4 SV=2
Length = 428
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 194 RRGKCPLTPNETALI------LQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 247
R CP + +L+ L +L T+IYL G++ I T VY+ + T +
Sbjct: 117 RISSCPSSNAFASLMCRYERQLDSLDNGKTTDIYLNDIGGVISIHDSTGVYSQITT-TPY 175
Query: 248 RTGEDFTRMHGNTKAALDYYVSINSD 273
++ ED+ ++ G KA++ + +S+ D
Sbjct: 176 KSLEDYEQLFGEDKASM-FDISVKQD 200
>sp|Q5EA77|SNX17_BOVIN Sorting nexin-17 OS=Bos taurus GN=SNX17 PE=2 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 79 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 137
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 138 EAIPKPFLSLHL 149
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
>sp|Q5R4A5|SNX17_PONAB Sorting nexin-17 OS=Pongo abelii GN=SNX17 PE=2 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 79 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 137
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 138 EAIPKPFLSLHL 149
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
>sp|Q6AYS6|SNX17_RAT Sorting nexin-17 OS=Rattus norvegicus GN=Snx17 PE=1 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 79 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 137
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 138 EAIPKPFLSLHL 149
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
>sp|Q15036|SNX17_HUMAN Sorting nexin-17 OS=Homo sapiens GN=SNX17 PE=1 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 79 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 137
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 138 EAIPKPFLSLHL 149
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,958,462
Number of Sequences: 539616
Number of extensions: 4907583
Number of successful extensions: 11212
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 11205
Number of HSP's gapped (non-prelim): 10
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)