Query 018917
Match_columns 349
No_of_seqs 132 out of 404
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:07:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 1.7E-50 3.7E-55 389.7 -2.2 280 1-298 15-346 (351)
2 PF05830 NodZ: Nodulation prot 93.4 0.06 1.3E-06 53.4 3.1 235 2-286 19-290 (321)
3 KOG3849 GDP-fucose protein O-f 91.7 0.27 5.9E-06 48.5 4.9 170 90-296 184-369 (386)
4 PF14771 DUF4476: Domain of un 71.1 1.3 2.9E-05 35.8 0.0 36 199-246 39-74 (95)
5 KOG3705 Glycoprotein 6-alpha-L 58.7 48 0.001 34.8 8.3 141 122-304 340-491 (580)
6 PF00799 Gemini_AL1: Geminivir 48.6 18 0.00039 31.0 3.0 29 197-226 14-42 (114)
7 PF10892 DUF2688: Protein of u 45.1 15 0.00034 28.1 1.8 17 195-212 41-57 (60)
8 TIGR01354 cyt_deam_tetra cytid 39.9 28 0.00061 29.9 2.9 47 200-247 80-127 (127)
9 KOG3849 GDP-fucose protein O-f 38.8 17 0.00037 36.2 1.5 46 6-55 51-99 (386)
10 PRK05578 cytidine deaminase; V 38.0 28 0.0006 30.4 2.6 99 145-248 26-131 (131)
11 PRK11611 enhanced serine sensi 35.6 39 0.00084 32.8 3.4 93 194-298 99-205 (246)
12 smart00874 B5 tRNA synthetase 35.5 36 0.00078 25.6 2.6 24 192-216 12-35 (71)
13 PRK10556 hypothetical protein; 30.0 35 0.00075 29.0 1.8 19 200-218 3-21 (111)
14 PLN02232 ubiquinone biosynthes 29.8 52 0.0011 28.8 3.0 28 199-226 125-152 (160)
15 PF09400 DUF2002: Protein of u 27.5 33 0.00071 29.4 1.2 19 200-218 3-21 (111)
16 PRK15451 tRNA cmo(5)U34 methyl 26.2 74 0.0016 29.8 3.5 28 194-221 203-230 (247)
17 PF03484 B5: tRNA synthetase B 26.2 42 0.00091 25.7 1.5 25 192-217 12-36 (70)
18 PF08924 DUF1906: Domain of un 24.6 83 0.0018 27.4 3.3 21 205-225 82-102 (136)
19 cd06418 GH25_BacA-like BacA is 22.0 99 0.0021 29.0 3.5 22 205-226 94-115 (212)
20 PF12022 DUF3510: Domain of un 21.2 26 0.00056 30.2 -0.6 47 40-91 1-47 (125)
21 PF14401 RLAN: RimK-like ATPgr 20.8 1.7E+02 0.0037 26.1 4.6 42 117-159 89-131 (153)
22 COG0859 RfaF ADP-heptose:LPS h 20.4 1.1E+02 0.0023 30.1 3.5 72 204-291 199-271 (334)
23 PF13756 Stimulus_sens_1: Stim 20.1 1.2E+02 0.0026 25.5 3.3 28 200-227 1-28 (112)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=1.7e-50 Score=389.73 Aligned_cols=280 Identities=28% Similarity=0.421 Sum_probs=191.9
Q ss_pred CchhhHHHHHHHhcceEEccccCcccccCCCCC-----CCccccHHHHHHhccCceEEeccCCccccCCCCc--------
Q 018917 1 MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSD-----FADIFEADYFIQHMDGFVKVVKELPPEISSKEPF-------- 67 (349)
Q Consensus 1 ~~IcdaV~vArlLNATLVlP~l~~~s~w~D~s~-----F~dIfD~dhFI~~L~~dVrIvk~LP~~~~~~~~~-------- 67 (349)
|++++||++|++||+|||||.+.....|++.++ |+++||+++|+++++++|.+.+.+|..+......
T Consensus 15 ~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~~~~~~~~~~ 94 (351)
T PF10250_consen 15 MGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFRLQYCWSPWE 94 (351)
T ss_dssp HHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-EEEESS-B-
T ss_pred HHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccchhhcccccc
Confidence 478999999999999999999999999999988 9999999999999999999999998655432110
Q ss_pred -----------------------eecccC-CCCccchHHhhHHHHHhc------ceEEEccCcccccc-CChhHHHHHhH
Q 018917 68 -----------------------HVDCSK-RKGQFDYVESVLPALLEH------KYISLTPAMSQRRD-RYPRFAKAALC 116 (349)
Q Consensus 68 -----------------------~~~~~~-~~s~~~Y~~~vlp~l~k~------~vi~l~~~~~~l~~-~~p~~~q~LRC 116 (349)
...... +.++.+|+++++|.+.++ +|+.|.++...+.+ ..+.++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r--- 171 (351)
T PF10250_consen 95 SGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR--- 171 (351)
T ss_dssp -------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG---
T ss_pred cccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE---
Confidence 001111 234556788899999886 99999999888764 47777876
Q ss_pred HhhccccccchHHHHHHHHHHHhcC---CCceeeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcc--hhhh
Q 018917 117 QACYSALRLTRSLQKKAAELLEAIP---KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGE--VAHI 191 (349)
Q Consensus 117 r~nf~ALrF~~~I~~lg~~lv~rl~---g~fiAlHLR~E~Dmla~sgC~~~g~~~~e~~~l~~~R~~~~~w~~~--~~~~ 191 (349)
+|+|+++|+++|+++++++. ++|||+|||+|+|| +++|.+ ++ +...|+.+|.. .++ .+..
T Consensus 172 -----~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~-~~---~~~~~~~~~~~----~~~~~~~~~ 236 (351)
T PF10250_consen 172 -----YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEF-KG---ERHLLASPRCW----GKKSINPEK 236 (351)
T ss_dssp -----G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT--T-------TTTHHHH-----GGGTT---
T ss_pred -----EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--Hhhccc-CC---chHHHHHhHhh----ccccccchh
Confidence 99999999999999999987 89999999999999 888997 44 45556666632 111 2346
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCCCceEEEeecC---CcchhhHHHHhccccccccCCCChhhhccccCCccceeeEEE
Q 018917 192 WRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD---GLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYV 268 (349)
Q Consensus 192 ~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~g~---g~~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V 268 (349)
.+..|.||++|++++.+++++|+.+.|.||||+++ |...|++|++.||++++|+++.+.+|++++.+.++|+||++|
T Consensus 237 ~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vD~~i 316 (351)
T PF10250_consen 237 KRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLNDDQLAMVDQEI 316 (351)
T ss_dssp --HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-----S--HHHHHHH
T ss_pred hhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccccchhHHHHHH
Confidence 68899999999999999999999999999999999 678899999999999999999999999999889999999999
Q ss_pred eecCceeeecCCCchHHHHHHHhhhcCCCe
Q 018917 269 SINSDSYMATYFGNMDKMVAAMRAFKGLYK 298 (349)
Q Consensus 269 ~~~SDvFv~t~~Gn~a~~v~GhR~~~G~~k 298 (349)
|++||+||+|..++|+.+|+++|.+.|+.+
T Consensus 317 ~~~s~~Figt~~Stfs~~i~~~R~~~g~~~ 346 (351)
T PF10250_consen 317 CSRSDVFIGTCGSTFSSNIARERHYRGKPK 346 (351)
T ss_dssp HHHSSEEEE-TT-HHHHHHHHHHHHSSSS-
T ss_pred HhcCCEEEecCcchhHHHhhcccCcCCCCC
Confidence 999999999998889999999999999763
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=93.44 E-value=0.06 Score=53.40 Aligned_cols=235 Identities=16% Similarity=0.257 Sum_probs=110.2
Q ss_pred chhhHHHHHHHhcceEEccccCcccccCC----CCCCCccccHHHHHHhcc--CceEEecc-------CCccccCC--CC
Q 018917 2 QFCDGVGVAHLLNATLVLPKFEVAAYWNE----SSDFADIFEADYFIQHMD--GFVKVVKE-------LPPEISSK--EP 66 (349)
Q Consensus 2 ~IcdaV~vArlLNATLVlP~l~~~s~w~D----~s~F~dIfD~dhFI~~L~--~dVrIvk~-------LP~~~~~~--~~ 66 (349)
+++-|-..|+-.|.||||- |++ .-.|...|++ |-+-.+ ..|+|.-. +|-.+... +.
T Consensus 19 ~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d~i~~~~~~g~~fp~~w~~ 89 (321)
T PF05830_consen 19 SLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDDRINQFSFPGPFFPAWWNK 89 (321)
T ss_dssp HHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SGGGGT----SSEESGGGGS
T ss_pred HHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecchhhhhcCCCCcChhHHhC
Confidence 4677889999999999985 655 3456666654 544444 45666522 22211100 00
Q ss_pred ceecccCCCCccchH---HhhHHHHHh-------cceEEEccCccccccCChhHHHHHhHHhhccccccchHHHHHHHHH
Q 018917 67 FHVDCSKRKGQFDYV---ESVLPALLE-------HKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAEL 136 (349)
Q Consensus 67 ~~~~~~~~~s~~~Y~---~~vlp~l~k-------~~vi~l~~~~~~l~~~~p~~~q~LRCr~nf~ALrF~~~I~~lg~~l 136 (349)
..+.+-.+ |..|+ ..-|..|.. ..||+-.=.+-+ -+-+..|| -|..|+-+++|++..+.+
T Consensus 90 p~~~~~~~--pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~------c~~~aeR~--if~slkpR~eIqarID~i 159 (321)
T PF05830_consen 90 PSIDCVYR--PDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWR------CDEEAERE--IFSSLKPRPEIQARIDAI 159 (321)
T ss_dssp -GGGGS-----HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTS------S-HHHHHH--HHHHS-B-HHHHHHHHHH
T ss_pred CCcceecC--ChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCc------chhHHHHH--HHHhCCCCHHHHHHHHHH
Confidence 11111111 22233 234444432 445554322211 22234444 499999999999999998
Q ss_pred HHhc-CC-Cceeeeccc--chhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcchhhhhhcCCCCCCCHHHHHHHHHHc
Q 018917 137 LEAI-PK-PFLSLHLRF--EPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQAL 212 (349)
Q Consensus 137 v~rl-~g-~fiAlHLR~--E~Dmla~sgC~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CPLtPeEvgl~L~al 212 (349)
-++- .| +=|++|-|. .+|.+.+ +|.+ .++...|++.. .....++++
T Consensus 160 y~ehf~g~~~IGVHVRhGngeD~~~h-~~~~----~D~e~~L~~V~-------------------------~ai~~ak~~ 209 (321)
T PF05830_consen 160 YREHFAGYSVIGVHVRHGNGEDIMDH-APYW----ADEERALRQVC-------------------------TAIDKAKAL 209 (321)
T ss_dssp HHHHTTTSEEEEEEE--------------------HHHHHHHHHHH-------------------------HHHHHHHTS
T ss_pred HHHHcCCCceEEEEEeccCCcchhcc-Cccc----cCchHHHHHHH-------------------------HHHHHHHhc
Confidence 7764 44 479999993 1233333 2332 11111121110 011123445
Q ss_pred CCCCCceEEEeecCCcchhhHHHHhccccccccCCCChhhhccccC-------CccceeeEEEeecCceee-ecCCCchH
Q 018917 213 SIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHG-------NTKAALDYYVSINSDSYM-ATYFGNMD 284 (349)
Q Consensus 213 Gf~~~T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~-------~~~aAlDy~V~~~SDvFv-~t~~Gn~a 284 (349)
-...++.|+||+-. ...++-+++.||.+++-++=..+..-.++|+ -..|-+|.+..+.+|+-| .+-.+.|+
T Consensus 210 ~~~k~~~IFLATDS-aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fs 288 (321)
T PF05830_consen 210 APPKPVRIFLATDS-AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFS 288 (321)
T ss_dssp --SS-EEEEEEES--HHHHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGG
T ss_pred cCCCCeeEEEecCc-HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhh
Confidence 55678899999866 5678899999999887755333222112332 245889999999999999 55555555
Q ss_pred HH
Q 018917 285 KM 286 (349)
Q Consensus 285 ~~ 286 (349)
+.
T Consensus 289 r~ 290 (321)
T PF05830_consen 289 RY 290 (321)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 3
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.27 Score=48.46 Aligned_cols=170 Identities=15% Similarity=0.270 Sum_probs=97.4
Q ss_pred hcceEEEccCcccc---ccCChhHHHHHhHHhhccccccchHHHHHHHHHHHh-cCCCceeeecccchhhhhhcccccCC
Q 018917 90 EHKYISLTPAMSQR---RDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQG 165 (349)
Q Consensus 90 k~~vi~l~~~~~~l---~~~~p~~~q~LRCr~nf~ALrF~~~I~~lg~~lv~r-l~g~fiAlHLR~E~Dmla~sgC~~~g 165 (349)
+|-|+.|++.-... -..+| +|+ | ||.+.+|.+.|++.+.. |..||+++|||.-.||+-- |..-.
T Consensus 184 eyPVLAf~gAPA~FPv~~e~~~--lQk------Y--l~WS~r~~e~~k~fI~a~L~rpfvgiHLRng~DWvra--Cehik 251 (386)
T KOG3849|consen 184 EYPVLAFSGAPAPFPVKGEVWS--LQK------Y--LRWSSRITEQAKKFISANLARPFVGIHLRNGADWVRA--CEHIK 251 (386)
T ss_pred cCceeeecCCCCCCcccccccc--HHH------H--HHHHHHHHHHHHHHHHHhcCcceeEEEeecCchHHHH--HHHhc
Confidence 36788876442221 12344 566 3 78999999999997654 7789999999999999864 76311
Q ss_pred CChhHHHHHHHHhcCCCCCCcch--hhhhhc-----CCCCCCCHHHHH----HHHHHcCCCCCceEEEeecCCcchhhHH
Q 018917 166 LSPTSMQAIEAARGDRKPWTGEV--AHIWRR-----RGKCPLTPNETA----LILQALSIPTNTNIYLAAGDGLMEIEGL 234 (349)
Q Consensus 166 ~~~~e~~~l~~~R~~~~~w~~~~--~~~~R~-----~G~CPLtPeEvg----l~L~alGf~~~T~IYlA~g~g~~~l~~L 234 (349)
-+. ..|.-... -...+. ...|-=.-+++- +-.+.+| .--.+|+|+-.. .-+.-|
T Consensus 252 d~~------------~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~--dakSVfVAsDs~-hmi~El 316 (386)
T KOG3849|consen 252 DTT------------NRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIG--DAKSVFVASDSD-HMIDEL 316 (386)
T ss_pred ccC------------CCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhc--ccceEEEeccch-hhhHHH
Confidence 100 00111100 000011 223433333432 2223333 233689887652 212223
Q ss_pred H-HhccccccccCCCChhhhccccCCccceeeEEEeecCceeeecCCCchHHHHHHHhhhcCC
Q 018917 235 T-SVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGL 296 (349)
Q Consensus 235 ~-~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V~~~SDvFv~t~~Gn~a~~v~GhR~~~G~ 296 (349)
. +++|-=..-..| ..--+-+|..|.-+||-||++--++|+..|.-.|-..|+
T Consensus 317 n~aL~~~~i~vh~l----------~pdd~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~Gr 369 (386)
T KOG3849|consen 317 NEALKPYEIEVHRL----------EPDDMYTDLAILGQADHFIGNCVSSFSAFVKRERDHAGR 369 (386)
T ss_pred HHhhcccceeEEec----------CcccchhhhhhhcccchhhhhhHHHHHHHHhhhhcccCC
Confidence 2 233321111110 112355888999999999999999999999999988883
No 4
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=71.08 E-value=1.3 Score=35.81 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHcCCCCCceEEEeecCCcchhhHHHHhccccccccC
Q 018917 199 PLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSA 246 (349)
Q Consensus 199 PLtPeEvgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fPn~~tKe~ 246 (349)
++|-.+++-+|+...|+ ..+|..++-++|++++++.
T Consensus 39 ~~T~~Qv~~il~~f~fd------------~~kl~~lk~l~p~i~D~~n 74 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD------------NDKLKALKLLYPYIVDPQN 74 (95)
T ss_pred ceeHHHHHHHHHHcCCC------------HHHHHHHHHHhhhccCHHH
Confidence 49999999999999999 5789999999999999964
No 5
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.72 E-value=48 Score=34.78 Aligned_cols=141 Identities=18% Similarity=0.263 Sum_probs=83.8
Q ss_pred ccccchHHHHHHHHHHHhcC--CCceeeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcchhhhhhcCCCCC
Q 018917 122 ALRLTRSLQKKAAELLEAIP--KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP 199 (349)
Q Consensus 122 ALrF~~~I~~lg~~lv~rl~--g~fiAlHLR~E~Dmla~sgC~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CP 199 (349)
-+|++|-.++.-++-.+.|+ .|-|.||.|-- |=+.-. -.||- |+.+=. |-+
T Consensus 340 L~Rpqp~t~~~l~~a~k~lg~~~PivGvhvRRT-DKVGTE-AAfH~--------~eEYM~----~vE------------- 392 (580)
T KOG3705|consen 340 LMRPQPATQEKLDKALKSLGLDKPIVGVHVRRT-DKVGTE-AAFHA--------LEEYME----WVE------------- 392 (580)
T ss_pred HhCCChhhHHHHHHHHHhCCCCCceeeEEEEec-ccccch-hhhhh--------HHHHHH----HHH-------------
Confidence 47899999998888888875 79999999975 322211 01112 221111 211
Q ss_pred CCHHHHHHHHHHcCCCCCceEEEeecCCcchhhHHHHhccccccccCCCChhhhcc---c------cCCccceeeEEEee
Q 018917 200 LTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTR---M------HGNTKAALDYYVSI 270 (349)
Q Consensus 200 LtPeEvgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L~~~eEl~~---~------~~~~~aAlDy~V~~ 270 (349)
+--.+|..=|=+-.-+||||+-+. ..+.--+.-|||. .+....|.+. + .+...--+|..+.+
T Consensus 393 ----~~f~~le~rg~~~~rRiflAsDDp-~vv~EAk~kYPnY----e~igd~eia~~A~l~nRYTd~sL~GvIlDIh~LS 463 (580)
T KOG3705|consen 393 ----IWFKVLEKRGKPLERRIFLASDDP-TVVPEAKNKYPNY----EVIGDTEIAKTAQLNNRYTDASLMGVILDIHILS 463 (580)
T ss_pred ----HHHHHHHHhCCchhheEEEecCCc-hhchHhhccCCCc----EEeccHHHHHHhhccccchhhhhhheeeeeeeec
Confidence 112233333445566899999883 3445567789985 4555556543 2 12333557999999
Q ss_pred cCceeeecCCCchHHHHHHHhhhcCCCeeEecch
Q 018917 271 NSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSR 304 (349)
Q Consensus 271 ~SDvFv~t~~Gn~a~~v~GhR~~~G~~kti~Pdr 304 (349)
.+|..|.|+++-.- |.-+--.+|.-||-
T Consensus 464 ~~d~LVCTFSSQVC------RvaYEimQt~~pDa 491 (580)
T KOG3705|consen 464 KVDYLVCTFSSQVC------RVAYEIMQTSGPDA 491 (580)
T ss_pred ccceEEEechHHHH------HHHHHHHhccCCCc
Confidence 99999998876522 33333345566664
No 6
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=48.56 E-value=18 Score=31.03 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEeecC
Q 018917 197 KCPLTPNETALILQALSIPTNTNIYLAAGD 226 (349)
Q Consensus 197 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g~ 226 (349)
.|||+|||+...|+++--+ ....||..+.
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~r 42 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVCR 42 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEeec
Confidence 6999999999999999754 4677876654
No 7
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=45.11 E-value=15 Score=28.07 Aligned_cols=17 Identities=47% Similarity=0.808 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHHc
Q 018917 195 RGKCPLTPNETALILQAL 212 (349)
Q Consensus 195 ~G~CPLtPeEvgl~L~al 212 (349)
=|-| +||||-+.+++++
T Consensus 41 C~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 41 CGDC-ITPEEDREILEAT 57 (60)
T ss_pred hhcc-CCHHHHHHHHHHH
Confidence 3567 9999999999875
No 8
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=39.87 E-value=28 Score=29.89 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=36.5
Q ss_pred CCHHHH-HHHHHHcCCCCCceEEEeecCCcchhhHHHHhccccccccCC
Q 018917 200 LTPNET-ALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 247 (349)
Q Consensus 200 LtPeEv-gl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L 247 (349)
++|--+ -.+|..++ +.++.|++...+|.....+|+++.|.-+.+++|
T Consensus 80 ~sPCG~Crq~l~e~~-~~~~~v~~~~~~~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 80 VSPCGACRQVLAEFA-GPDTPIYMTNNDGTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCcCCcCcC
Confidence 455554 55788887 678999999998876667899999998877654
No 9
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.76 E-value=17 Score=36.20 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=31.4
Q ss_pred HHHHHHHhcceEEcccc---CcccccCCCCCCCccccHHHHHHhccCceEEec
Q 018917 6 GVGVAHLLNATLVLPKF---EVAAYWNESSDFADIFEADYFIQHMDGFVKVVK 55 (349)
Q Consensus 6 aV~vArlLNATLVlP~l---~~~s~w~D~s~F~dIfD~dhFI~~L~~dVrIvk 55 (349)
..|-|+.||.|||+|-. ++-.+-+-.-.|...|.++- |+..-|||.
T Consensus 51 sLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vep----l~~YhRVit 99 (386)
T KOG3849|consen 51 SLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEP----LAKYHRVIT 99 (386)
T ss_pred HHHHHHHhcccccCCcchhccCCcccccccchhheeeccc----Hhhhhhhee
Confidence 35889999999999953 44444444567888888764 444446654
No 10
>PRK05578 cytidine deaminase; Validated
Probab=38.04 E-value=28 Score=30.38 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=56.0
Q ss_pred eeeecccchhhhhhcccccCC-----CChhHHHHHHHHhcC-CCCCCcchhhhhhcCCCCCCCHHHH-HHHHHHcCCCCC
Q 018917 145 LSLHLRFEPDMVAYSQCEYQG-----LSPTSMQAIEAARGD-RKPWTGEVAHIWRRRGKCPLTPNET-ALILQALSIPTN 217 (349)
Q Consensus 145 iAlHLR~E~Dmla~sgC~~~g-----~~~~e~~~l~~~R~~-~~~w~~~~~~~~R~~G~CPLtPeEv-gl~L~alGf~~~ 217 (349)
++-.+|.+ |=-.|.||.... .--+|.-+|-.+-.. ...+..-.-- -+. .-+.+|==. -.+|..++ +.+
T Consensus 26 Vgaa~~~~-~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~G~~~i~~i~vv-~~~--~~~~sPCG~CRQ~l~e~~-~~~ 100 (131)
T PRK05578 26 VGAALLTD-DGRIYTGCNIENASYGLTNCAERTAIFKAISEGGGRLVAIACV-GET--GEPLSPCGRCRQVLAEFG-GPD 100 (131)
T ss_pred eEEEEEeC-CCCEEEEEEeeCccccCCcCHHHHHHHHHHHcCCCceEEEEEE-ecC--CCccCccHHHHHHHHHhC-CCC
Confidence 66777775 555566665322 222566666554211 1111111000 011 113444333 34566664 579
Q ss_pred ceEEEeecCCcchhhHHHHhccccccccCCC
Q 018917 218 TNIYLAAGDGLMEIEGLTSVYTNVVTKSALR 248 (349)
Q Consensus 218 T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L~ 248 (349)
|.||+...+|......|+++.|.-+++++|.
T Consensus 101 ~~v~l~~~~~~~~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 101 LLVTLVAKDGPTGEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred cEEEEEcCCCCEEEEEHHHhCcCcCChhhcC
Confidence 9999999888766689999999999888763
No 11
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=35.61 E-value=39 Score=32.79 Aligned_cols=93 Identities=19% Similarity=0.327 Sum_probs=57.7
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCceEEEeecC----C------cchhhHHHHhccccccccCCCChhhhccccCCccce
Q 018917 194 RRGKCPLTPNETALILQALSIPTNTNIYLAAGD----G------LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAA 263 (349)
Q Consensus 194 ~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~g~----g------~~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~~~~aA 263 (349)
--|++ ++|+||..+|..-|....+..-|-.|. | ..-.+.|+++|.+- .-.-..=|...+......
T Consensus 99 ~~gk~-f~p~EI~~LL~~~~~~~~~~~~i~~g~~v~lg~p~~~P~~lv~~L~~lf~~~----k~V~rAyL~~~~~~~d~~ 173 (246)
T PRK11611 99 PTGKE-FMPREISLLLGEEGNPLSSQEVLEGGESLLLSEVAEPPAQMIDSLTTLFKTI----KPVKRAFLASIKENADAQ 173 (246)
T ss_pred CCCcc-cCHHHHHHHHhccCCCcceeEEeCCCCEEEecCCccchHHHHHHHHHHHhhc----chHHHHHHHHHhccCCCC
Confidence 36777 999999999999999999988888777 3 23345788877642 111111122233322455
Q ss_pred eeEEEeecCceeeecCCCchHHHHHH----HhhhcCCCe
Q 018917 264 LDYYVSINSDSYMATYFGNMDKMVAA----MRAFKGLYK 298 (349)
Q Consensus 264 lDy~V~~~SDvFv~t~~Gn~a~~v~G----hR~~~G~~k 298 (349)
..++|+++.| |+-..++.+ ++-|.+...
T Consensus 174 p~LLI~le~~-------~d~e~ii~~ag~~a~~~l~~d~ 205 (246)
T PRK11611 174 PNLLIGIEAD-------GDIEEIIQAAGSVATDTLPGDE 205 (246)
T ss_pred CceEEEEecC-------CCHHHHHHHHhHHHHHhCCCCC
Confidence 6688888874 554444443 455554443
No 12
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=35.47 E-value=36 Score=25.61 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.3
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCC
Q 018917 192 WRRRGKCPLTPNETALILQALSIPT 216 (349)
Q Consensus 192 ~R~~G~CPLtPeEvgl~L~alGf~~ 216 (349)
.+..|.. ++++|+.-+|+.|||+-
T Consensus 12 ~~llG~~-i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGLD-LSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCCC-CCHHHHHHHHHHCCCeE
Confidence 3567764 99999999999999984
No 13
>PRK10556 hypothetical protein; Provisional
Probab=29.96 E-value=35 Score=29.03 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 018917 200 LTPNETALILQALSIPTNT 218 (349)
Q Consensus 200 LtPeEvgl~L~alGf~~~T 218 (349)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998665
No 14
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=29.78 E-value=52 Score=28.78 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHcCCCCCceEEEeecC
Q 018917 199 PLTPNETALILQALSIPTNTNIYLAAGD 226 (349)
Q Consensus 199 PLtPeEvgl~L~alGf~~~T~IYlA~g~ 226 (349)
+++|+|...+|+..||.+-+.-+++.|-
T Consensus 125 f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 125 YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 4899999999999999998888877664
No 15
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=27.48 E-value=33 Score=29.41 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 018917 200 LTPNETALILQALSIPTNT 218 (349)
Q Consensus 200 LtPeEvgl~L~alGf~~~T 218 (349)
|-|.||+.+|...||..+.
T Consensus 3 lrpdeva~vle~~gf~~d~ 21 (111)
T PF09400_consen 3 LRPDEVARVLEKAGFERDY 21 (111)
T ss_dssp --HHHHHHHHHHTT-EEEE
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998664
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=26.21 E-value=74 Score=29.78 Aligned_cols=28 Identities=4% Similarity=-0.091 Sum_probs=22.7
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCceEE
Q 018917 194 RRGKCPLTPNETALILQALSIPTNTNIY 221 (349)
Q Consensus 194 ~~G~CPLtPeEvgl~L~alGf~~~T~IY 221 (349)
.+-..|+|++|..-+|+.-||..-..+|
T Consensus 203 ~~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 203 ENVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred HhhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 3456789999999999999999765544
No 17
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=26.16 E-value=42 Score=25.71 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=17.2
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCCC
Q 018917 192 WRRRGKCPLTPNETALILQALSIPTN 217 (349)
Q Consensus 192 ~R~~G~CPLtPeEvgl~L~alGf~~~ 217 (349)
.+..|.. ++++|+.-+|+.|||.-.
T Consensus 12 ~~~lG~~-i~~~~i~~~L~~lg~~~~ 36 (70)
T PF03484_consen 12 NKLLGID-ISPEEIIKILKRLGFKVE 36 (70)
T ss_dssp HHHHTS----HHHHHHHHHHTT-EEE
T ss_pred HHHhCCC-CCHHHHHHHHHHCCCEEE
Confidence 3566764 999999999999999843
No 18
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=24.60 E-value=83 Score=27.40 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=13.0
Q ss_pred HHHHHHHcCCCCCceEEEeec
Q 018917 205 TALILQALSIPTNTNIYLAAG 225 (349)
Q Consensus 205 vgl~L~alGf~~~T~IYlA~g 225 (349)
....-++||||..|.||.+.=
T Consensus 82 A~~~A~~lG~p~gt~IYfavD 102 (136)
T PF08924_consen 82 AVAAARALGFPAGTPIYFAVD 102 (136)
T ss_dssp HHHHHHHTT--SS-EEEEE--
T ss_pred HHHHHHHcCCCCCCEEEEEee
Confidence 344568899999999999865
No 19
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=21.96 E-value=99 Score=28.99 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCCCceEEEeecC
Q 018917 205 TALILQALSIPTNTNIYLAAGD 226 (349)
Q Consensus 205 vgl~L~alGf~~~T~IYlA~g~ 226 (349)
.-..-++|||+..|.||+|-=.
T Consensus 94 A~~~A~~lG~p~gs~IYfavD~ 115 (212)
T cd06418 94 AVAAARALGFPPGTIIYFAVDF 115 (212)
T ss_pred HHHHHHHcCCCCCCEEEEEeec
Confidence 3446688999999999999755
No 20
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=21.19 E-value=26 Score=30.19 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=34.1
Q ss_pred HHHHHHhccCceEEeccCCccccCCCCceecccCCCCccchHHhhHHHHHhc
Q 018917 40 ADYFIQHMDGFVKVVKELPPEISSKEPFHVDCSKRKGQFDYVESVLPALLEH 91 (349)
Q Consensus 40 ~dhFI~~L~~dVrIvk~LP~~~~~~~~~~~~~~~~~s~~~Y~~~vlp~l~k~ 91 (349)
++++.+.+....+=|+++|.-+++-+. ..|. .|++|+.+|+-.|+..
T Consensus 1 v~~l~~~c~~~L~~v~~Ip~~YR~Tnk---~~Pt--~~S~yV~~il~Pl~~F 47 (125)
T PF12022_consen 1 VQSLTERCVEPLKQVRSIPRQYRMTNK---PVPT--KPSPYVSSILRPLKSF 47 (125)
T ss_pred CHHHHHHHHHHHHHHhhhHHHhhccCC---CCCC--CccHHHHHHHHHHHHH
Confidence 356777888888889999988875331 1233 3668999999988763
No 21
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=20.77 E-value=1.7e+02 Score=26.14 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=33.1
Q ss_pred HhhccccccchHHHHHHHHHHHhcCCCceeeecccchh-hhhhc
Q 018917 117 QACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPD-MVAYS 159 (349)
Q Consensus 117 r~nf~ALrF~~~I~~lg~~lv~rl~g~fiAlHLR~E~D-mla~s 159 (349)
.+.|+-= =.|+++++|.+|-++.+-|++-+.++.+.+ |-..+
T Consensus 89 ~iyFG~~-~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~ 131 (153)
T PF14401_consen 89 SIYFGQT-PDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISS 131 (153)
T ss_pred EEEECCC-CCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEee
Confidence 4445443 479999999999999999999999999877 44433
No 22
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.45 E-value=1.1e+02 Score=30.14 Aligned_cols=72 Identities=24% Similarity=0.178 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCCCCceEEEeecCCc-chhhHHHHhccccccccCCCChhhhccccCCccceeeEEEeecCceeeecCCCc
Q 018917 204 ETALILQALSIPTNTNIYLAAGDGL-MEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGN 282 (349)
Q Consensus 204 Evgl~L~alGf~~~T~IYlA~g~g~-~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V~~~SDvFv~t~~Gn 282 (349)
|++..|.+-| .+|.|.+|..+ +..+.+.+..++.+. |+....|..+ ++|- ..||.||++.+|-
T Consensus 199 ~l~~~l~~~~----~~Vvl~g~~~e~e~~~~i~~~~~~~~~---l~~k~sL~e~-----~~li----~~a~l~I~~DSg~ 262 (334)
T COG0859 199 ELAELLIAKG----YQVVLFGGPDEEERAEEIAKGLPNAVI---LAGKTSLEEL-----AALI----AGADLVIGNDSGP 262 (334)
T ss_pred HHHHHHHHCC----CEEEEecChHHHHHHHHHHHhcCCccc---cCCCCCHHHH-----HHHH----hcCCEEEccCChH
Confidence 5667777777 68999998843 455678888887554 4444444322 2221 5789999999997
Q ss_pred hHHHHHHHh
Q 018917 283 MDKMVAAMR 291 (349)
Q Consensus 283 ~a~~v~GhR 291 (349)
|.=+-+-++
T Consensus 263 ~HlAaA~~~ 271 (334)
T COG0859 263 MHLAAALGT 271 (334)
T ss_pred HHHHHHcCC
Confidence 665555444
No 23
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.14 E-value=1.2e+02 Score=25.53 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHcCCCCCceEEEeecCC
Q 018917 200 LTPNETALILQALSIPTNTNIYLAAGDG 227 (349)
Q Consensus 200 LtPeEvgl~L~alGf~~~T~IYlA~g~g 227 (349)
|+||-++-+|+-|.-+.+|+.+|=..+|
T Consensus 1 l~pe~a~plLrrL~~Pt~~RARlyd~dG 28 (112)
T PF13756_consen 1 LNPERARPLLRRLISPTRTRARLYDPDG 28 (112)
T ss_pred CCHHHHHHHHHHhCCCCCceEEEECCCC
Confidence 6899999999999999999755544443
Done!