Query 018917
Match_columns 349
No_of_seqs 132 out of 404
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.4 1.5E-12 5E-17 128.6 9.9 166 121-298 217-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.1 2.1E-10 7.1E-15 112.5 12.0 169 90-295 165-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 96.2 0.014 4.9E-07 59.9 9.6 142 122-295 273-421 (526)
4 2hhc_A NODZ, nodulation fucosy 90.9 0.24 8.3E-06 46.6 5.2 138 118-288 143-294 (330)
5 1l2m_A REP protein; A+B fold, 33.4 27 0.00094 29.0 3.0 29 197-226 17-45 (118)
6 2fr5_A Cytidine deaminase; tet 31.6 29 0.00099 29.6 2.9 98 145-247 38-142 (146)
7 1p3q_Q VPS9P, vacuolar protein 29.7 6.7 0.00023 28.6 -1.2 38 229-269 14-51 (54)
8 2g7j_A Putative cytoplasmic pr 28.3 23 0.00079 29.4 1.7 19 200-218 3-21 (124)
9 2d30_A Cytidine deaminase; pur 24.9 41 0.0014 28.5 2.7 98 145-247 35-139 (141)
10 2eqr_A N-COR1, N-COR, nuclear 22.1 47 0.0016 23.8 2.2 20 194-213 9-28 (61)
11 1uwz_A Cytidine deaminase; CDD 21.9 57 0.0019 27.2 3.0 100 144-247 25-130 (136)
12 1wgl_A TOLL-interacting protei 21.2 4.2 0.00014 29.8 -3.7 47 228-277 10-56 (59)
13 3i5g_B Myosin regulatory light 20.4 1.5E+02 0.0051 24.0 5.2 41 165-217 9-50 (153)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.36 E-value=1.5e-12 Score=128.64 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=110.1
Q ss_pred cccccchHHHHHHHHHHHh-cCCCceeeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcchhhhhhcCCCCC
Q 018917 121 SALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP 199 (349)
Q Consensus 121 ~ALrF~~~I~~lg~~lv~r-l~g~fiAlHLR~E~Dmla~sgC~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CP 199 (349)
..|+|++.|.+.|++.++. |.++|+++|+|...|+... |...+. +.- .-....||+..+-. .-....+|
T Consensus 217 r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~dw~~~--~~~~~~--~~~-----~~y~~~H~Rr~d~~-~~~~~~~p 286 (408)
T 4ap5_A 217 RSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKM--KVKLGS--ALG-----GPYLGVHLRRKDFI-WGHRQDVP 286 (408)
T ss_dssp HTCCBCHHHHHHHHHHHHHHHCCCTTTTTCCCCSSGGGC--CCCTTC--BCC-----EEEEEEEECCTTTT-TTTCSSSC
T ss_pred HHhhhhHHHHHHHHHHHHHHhCcccceeecccchhHhhh--hccccc--ccC-----CCccccccccccch-hhhhccCC
Confidence 4799999999999998765 6899999999999998764 431110 000 00001122221110 01122344
Q ss_pred CCHHHHHHHHHHcCCCCCceEEEeecCCcchhhHHHHhccccccccCCCChhhhccccCCccceeeEEEeecCceeeecC
Q 018917 200 LTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATY 279 (349)
Q Consensus 200 LtPeEvgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V~~~SDvFv~t~ 279 (349)
-.++-+..+.+.+.=.+-+.||||+-+.+..+.-|++.+|.++.-.. ..+++..+.....|.||-+||.+||+||+|.
T Consensus 287 s~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~d~~~a~idq~Ic~~a~~FiGt~ 364 (408)
T 4ap5_A 287 SLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEP--TWEELELYKDGGVAIIDQWICAHARFFIGTS 364 (408)
T ss_dssp CHHHHHHHHHHHHHHHTCSCEEEEECCCHHHHHHHHHHCTTEECCCC--CHHHHHHHHHHHHHHHHHHHHHTEEEEEBCT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHhCCCcEEecC--cchhhhccCcchhhHHHHHHHHhCCeeEeCC
Confidence 44433333333333224458999987666667889999998654322 2344555555667899999999999999999
Q ss_pred CCchHHHHHHHhhhcCCCe
Q 018917 280 FGNMDKMVAAMRAFKGLYK 298 (349)
Q Consensus 280 ~Gn~a~~v~GhR~~~G~~k 298 (349)
.++|+..|.-.|.+.|+..
T Consensus 365 ~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 365 VSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp TCHHHHHHHHHHHHHTBCG
T ss_pred cCchhHHHHHHHHhcCCCC
Confidence 9999999999999999764
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.14 E-value=2.1e-10 Score=112.52 Aligned_cols=169 Identities=16% Similarity=0.241 Sum_probs=107.9
Q ss_pred hcceEEEccCcccc-ccCChhHHHHHhHHhhccccccchHHHHHHHHHHHh-cCCCceeeecccchhhhhhcccccCCCC
Q 018917 90 EHKYISLTPAMSQR-RDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQGLS 167 (349)
Q Consensus 90 k~~vi~l~~~~~~l-~~~~p~~~q~LRCr~nf~ALrF~~~I~~lg~~lv~r-l~g~fiAlHLR~E~Dmla~sgC~~~g~~ 167 (349)
+|=|+.|++.-..- ...---.||| -|+++++|.+.|++.++. |.+||||+|||-=.|+.-. |.+-..+
T Consensus 165 ~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~a--C~hlk~~ 234 (362)
T 3zy2_A 165 EYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRV--CEHIDTT 234 (362)
T ss_dssp TCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHH--HHTCCTT
T ss_pred cCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHH--Hhhhccc
Confidence 47888887542211 0111122444 589999999999998877 8889999999999999866 8731110
Q ss_pred hhHHHHHHHHhcCCCCCCcch--hhhhhcCCCCCCC-------HHH----HHHHHHHcCCCCCceEEEeecCCcchhhHH
Q 018917 168 PTSMQAIEAARGDRKPWTGEV--AHIWRRRGKCPLT-------PNE----TALILQALSIPTNTNIYLAAGDGLMEIEGL 234 (349)
Q Consensus 168 ~~e~~~l~~~R~~~~~w~~~~--~~~~R~~G~CPLt-------PeE----vgl~L~alGf~~~T~IYlA~g~g~~~l~~L 234 (349)
. . .+.-..- -.-....| ||| -++ +..+++.+|.+ .||||+-. ...++-|
T Consensus 235 ~--------~----~~lfaSPQC~Gy~~~~~--~lt~emClPSle~I~rqIk~~vk~~~lk---sVFIATDa-~~~~~EL 296 (362)
T 3zy2_A 235 T--------N----RPLFASEQCLGEGHHLG--TLTKEICSPSKQQILEQIVEKVGSIGAK---SVFVASDK-DHMIDEI 296 (362)
T ss_dssp T--------C----CCCTTTHHHHCGGGTTC--CCCHHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESS-CCCHHHH
T ss_pred c--------C----cccccCCcccCCcccCc--ccchhccCCCHHHHHHHHHHHHHhcCCc---EEEEecCC-HHHHHHH
Confidence 0 0 0000000 00001111 343 222 44556666544 89999954 4467889
Q ss_pred HHhccccccccCCCChhhhccccCCccceeeEEEeecCceeeecCCCchHHHHHHHhhhcC
Q 018917 235 TSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKG 295 (349)
Q Consensus 235 ~~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V~~~SDvFv~t~~Gn~a~~v~GhR~~~G 295 (349)
+++|+....+ +. .+.. -.|.||.+||.+||+||+|..++|+..|.-.|--.|
T Consensus 297 k~~L~~~~v~--vv------~~~p-e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 297 NEALKPYEIE--AH------RQEP-DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHHGGGTCC--EE------CCSS-CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHhhccCce--EE------EeCC-chhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 9988752111 10 0111 178999999999999999999999999999999988
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=96.24 E-value=0.014 Score=59.91 Aligned_cols=142 Identities=15% Similarity=0.221 Sum_probs=87.5
Q ss_pred ccccchHHHHHHHHHHHhc--CCCceeeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcchhhhhhcCCCCC
Q 018917 122 ALRLTRSLQKKAAELLEAI--PKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP 199 (349)
Q Consensus 122 ALrF~~~I~~lg~~lv~rl--~g~fiAlHLR~E~Dmla~sgC~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CP 199 (349)
-+|++++|++..+++.+.+ ++|.|+||.|-= |-++... .++.. .+..+.++.
T Consensus 273 l~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E~-~~~~~-~~Y~~~v~~----------------------- 326 (526)
T 2de0_X 273 LIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTEA-AFHPI-EEYMVHVEE----------------------- 326 (526)
T ss_dssp HTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------CC-CSCSH-HHHHHHHHH-----------------------
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCcccc-ccCCH-HHHHHHHHH-----------------------
Confidence 3899999999999999886 689999999964 4322110 11111 112211110
Q ss_pred CCHHHHHHHHHHcCCCCCceEEEeecCCcchhhHHHHhcccc--ccccCCCChhhhcc-c--cCCccceeeEEEeecCce
Q 018917 200 LTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNV--VTKSALRTGEDFTR-M--HGNTKAALDYYVSINSDS 274 (349)
Q Consensus 200 LtPeEvgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fPn~--~tKe~L~~~eEl~~-~--~~~~~aAlDy~V~~~SDv 274 (349)
.--.|+....+..+.||||+-+ ....+-+++.||+. ++-........+.. . .+...+.+|.++.+++|+
T Consensus 327 -----~~~~l~~~~~~~~~~ifLATDD-p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~ 400 (526)
T 2de0_X 327 -----HFQLLARRMQVDKKRVYLATDD-PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADF 400 (526)
T ss_dssp -----HHHHHHTTSCCSSCEEEEEESC-HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSE
T ss_pred -----HHHHHHhhcCCCCCeEEEEcCC-HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCe
Confidence 0001233346778899999765 45566778889985 22221111111111 1 112457899999999999
Q ss_pred eeecCCCchHHHHHHHhhhcC
Q 018917 275 YMATYFGNMDKMVAAMRAFKG 295 (349)
Q Consensus 275 Fv~t~~Gn~a~~v~GhR~~~G 295 (349)
||.|.++|++.++...|.-.+
T Consensus 401 ~Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 401 LVCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp EEECTTSHHHHHHHHHHTTSS
T ss_pred eecCCCCHHHHHHHHHhcCcC
Confidence 999999999999888775544
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=90.91 E-value=0.24 Score=46.63 Aligned_cols=138 Identities=9% Similarity=0.225 Sum_probs=75.2
Q ss_pred hhccccccchHHHHHHHHHHHh-cC-CCceeeecccchhhhhhcccccCCC-ChhHHHHHHHHhcCCCCCCcchhhhhhc
Q 018917 118 ACYSALRLTRSLQKKAAELLEA-IP-KPFLSLHLRFEPDMVAYSQCEYQGL-SPTSMQAIEAARGDRKPWTGEVAHIWRR 194 (349)
Q Consensus 118 ~nf~ALrF~~~I~~lg~~lv~r-l~-g~fiAlHLR~E~Dmla~sgC~~~g~-~~~e~~~l~~~R~~~~~w~~~~~~~~R~ 194 (349)
.-|+-|+++++|++..+++.+. +. .++|+||.|.=.+. ..|.. +. ..+..
T Consensus 143 ~i~~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~---~~~~~-~~~~~~~~----------------------- 195 (330)
T 2hhc_A 143 LIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGE---DIMEH-APYWADSE----------------------- 195 (330)
T ss_dssp HHHHHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC----------------CHHHH-----------------------
T ss_pred HHHhcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCCC---ccccc-CcchHHHh-----------------------
Confidence 3357889999999999998865 44 59999999964221 12321 11 11000
Q ss_pred CCCCCCCHHHHHHHHHHc--CCC-CCceEEEeecCCcchhhHHHHhcccccccc-CCCC-h-hhhc----cccCCcccee
Q 018917 195 RGKCPLTPNETALILQAL--SIP-TNTNIYLAAGDGLMEIEGLTSVYTNVVTKS-ALRT-G-EDFT----RMHGNTKAAL 264 (349)
Q Consensus 195 ~G~CPLtPeEvgl~L~al--Gf~-~~T~IYlA~g~g~~~l~~L~~~fPn~~tKe-~L~~-~-eEl~----~~~~~~~aAl 264 (349)
|| -++.-.-++.+ -.+ .+..||||+-+. ...+-|++.||++.+-. .+.. . ..+. ...+...+.+
T Consensus 196 ---~~--l~~~~~~i~~~~~~~~~~~~~vfvaSDd~-~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 269 (330)
T 2hhc_A 196 ---LA--LHQVCMAIRKAKALSYPKPVKVFLCTDSA-QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALI 269 (330)
T ss_dssp ---HH--HHHHHHHHHHHHTSCCSSCEEEEEEESCH-HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHH
T ss_pred ---HH--HHHHHHHHHHHHhccCcCceEEEEEeCCH-HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHH
Confidence 00 01100001100 012 467899988773 46778999999843321 1110 0 0010 0112345889
Q ss_pred eEEEeecCceee-ecCCCchHHHHH
Q 018917 265 DYYVSINSDSYM-ATYFGNMDKMVA 288 (349)
Q Consensus 265 Dy~V~~~SDvFv-~t~~Gn~a~~v~ 288 (349)
|.+..+.+|.+| .+..++|+...+
T Consensus 270 Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 270 DMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred HHHHHHcCCeeEECCCCCCHHHHHH
Confidence 999999999999 444777877655
No 5
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=33.41 E-value=27 Score=29.01 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEeecC
Q 018917 197 KCPLTPNETALILQALSIPTNTNIYLAAGD 226 (349)
Q Consensus 197 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g~ 226 (349)
.||||+||+...|+.|--+. ...||..+.
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPT-NKLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSS-CEEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCc-ceeeeeehh
Confidence 69999999999999998554 356666554
No 6
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=31.58 E-value=29 Score=29.56 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=56.1
Q ss_pred eeeecccchhhhhhcccccCCCC-----hhHHHHHHHHhcCCCCCCcchhhhhhcCCCCC-CCHHHH-HHHHHHcCCCCC
Q 018917 145 LSLHLRFEPDMVAYSQCEYQGLS-----PTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP-LTPNET-ALILQALSIPTN 217 (349)
Q Consensus 145 iAlHLR~E~Dmla~sgC~~~g~~-----~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CP-LtPeEv-gl~L~alGf~~~ 217 (349)
++--++.+.. -.|+||...+.+ =+|.-++.++-.. ..+.-+.-..-...+. | ++|=-. .-+|..+| .+
T Consensus 38 VGAal~~~dG-~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~~-~~~~PCG~Crq~l~E~~--~~ 112 (146)
T 2fr5_A 38 VGAALLTGDG-RIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQE-EFISPCGACRQVMREFG--TD 112 (146)
T ss_dssp EEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCSS-SCCCCCHHHHHHHHHTC--SS
T ss_pred EEEEEEeCCC-cEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCCC-cccCCCHHHHHHHHHhC--CC
Confidence 5555666544 456788743322 1566666554322 2222111000011111 3 444333 44677777 78
Q ss_pred ceEEEeecCCcchhhHHHHhccccccccCC
Q 018917 218 TNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 247 (349)
Q Consensus 218 T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L 247 (349)
+.||++..+|......|+++.|.-++.++|
T Consensus 113 ~~v~~~~~~g~~~~~~l~eLLP~~F~~~~l 142 (146)
T 2fr5_A 113 WAVYMTKPDGTFVVRTVQELLPASFGPEDL 142 (146)
T ss_dssp CEEEEECTTSCEEEEEHHHHSTTCCCGGGG
T ss_pred CEEEEECCCCCEEEEEHHHhCCCCCChHHH
Confidence 999999988865567899999998887776
No 7
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=29.65 E-value=6.7 Score=28.57 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=21.5
Q ss_pred chhhHHHHhccccccccCCCChhhhccccCCccceeeEEEe
Q 018917 229 MEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVS 269 (349)
Q Consensus 229 ~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V~ 269 (349)
..+..|++|||++ ++|.+-+ =+....+...+|||-...
T Consensus 14 ~~~~~L~~MFP~l-D~evI~~--Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLIED--VCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHHHH--HHHHSCC--CGGGC----
T ss_pred HHHHHHHHHcccC-CHHHHHH--HHHHcCCCHHHHHHHHHh
Confidence 4578899999996 4443321 234567788888886543
No 8
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=28.34 E-value=23 Score=29.40 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 018917 200 LTPNETALILQALSIPTNT 218 (349)
Q Consensus 200 LtPeEvgl~L~alGf~~~T 218 (349)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998654
No 9
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=24.94 E-value=41 Score=28.50 Aligned_cols=98 Identities=15% Similarity=0.240 Sum_probs=53.3
Q ss_pred eeeecccchhhhhhcccccCCC-----ChhHHHHHHHHhcCC-CCCCcchhhhhhcCCCCCCCHHHH-HHHHHHcCCCCC
Q 018917 145 LSLHLRFEPDMVAYSQCEYQGL-----SPTSMQAIEAARGDR-KPWTGEVAHIWRRRGKCPLTPNET-ALILQALSIPTN 217 (349)
Q Consensus 145 iAlHLR~E~Dmla~sgC~~~g~-----~~~e~~~l~~~R~~~-~~w~~~~~~~~R~~G~CPLtPeEv-gl~L~alGf~~~ 217 (349)
++-=++.+.. -.|+||...+. -=+|+-+|-++-... ..+..-. .-...+. |++|==+ --+|..++ +.+
T Consensus 35 VGAAll~~dG-~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aia--v~~~~~~-~~~PCG~CRQ~l~E~~-~~~ 109 (141)
T 2d30_A 35 VGAALLTQDG-KVYRGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIA--IVADTKR-PVPPCGACRQVMVELC-KQD 109 (141)
T ss_dssp EEEEEEETTC-CEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEE--EEESCSS-CCCCCHHHHHHHHHHS-CTT
T ss_pred EEEEEEeCCC-CEEEeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEE--EEeCCCC-ccCcCHHHHHHHHHhc-CCC
Confidence 7777787744 66788874321 125666665543211 1111110 0001111 4556443 45666664 368
Q ss_pred ceEEEeecCCcchhhHHHHhccccccccCC
Q 018917 218 TNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 247 (349)
Q Consensus 218 T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L 247 (349)
+.|+++..+|.....+|.++.|.-++.++|
T Consensus 110 ~~V~~~~~~g~~~~~~l~eLLP~~F~~~~l 139 (141)
T 2d30_A 110 TKVYLSNLHGDVQETTVGELLPGAFLAEDL 139 (141)
T ss_dssp CEEEEECSSSCEEEEEHHHHSTTC------
T ss_pred eEEEEECCCCCEEEEEHHHhCCCCCChhhc
Confidence 999999988766667899999998888776
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.09 E-value=47 Score=23.78 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=17.3
Q ss_pred cCCCCCCCHHHHHHHHHHcC
Q 018917 194 RRGKCPLTPNETALILQALS 213 (349)
Q Consensus 194 ~~G~CPLtPeEvgl~L~alG 213 (349)
+....|.||+|..+|++++-
T Consensus 9 r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHH
Confidence 46778999999999999984
No 11
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=21.92 E-value=57 Score=27.19 Aligned_cols=100 Identities=11% Similarity=0.148 Sum_probs=56.8
Q ss_pred ceeeecccchhhhhhcccccCCC-----ChhHHHHHHHHhcCCCCCCcchhhhhhcCCCCCCCHHHH-HHHHHHcCCCCC
Q 018917 144 FLSLHLRFEPDMVAYSQCEYQGL-----SPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNET-ALILQALSIPTN 217 (349)
Q Consensus 144 fiAlHLR~E~Dmla~sgC~~~g~-----~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CPLtPeEv-gl~L~alGf~~~ 217 (349)
.++--++.+.. -.|+||..... --+|+-+|.++-.. ..|.-+....-...+. +++|=-+ .-+|..+| +.+
T Consensus 25 ~VGAal~~~dG-~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~~-~~~PCg~Crq~l~e~~-~~~ 100 (136)
T 1uwz_A 25 QVGAALLTKDG-KVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTPG-PVSPCGACRQVISELC-TKD 100 (136)
T ss_dssp CEEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCSS-SCCCCHHHHHHHHHHS-CTT
T ss_pred CEEEEEEeCCC-eEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCCC-ccCHHHHHHHHHHHcC-CCC
Confidence 46666666533 34477763221 22566666655432 3333221100011111 4555443 33455554 368
Q ss_pred ceEEEeecCCcchhhHHHHhccccccccCC
Q 018917 218 TNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 247 (349)
Q Consensus 218 T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L 247 (349)
+.||++..+|.....+|.++.|.-++.++|
T Consensus 101 ~~v~~~~~~g~~~~~~l~eLLP~~f~~~~l 130 (136)
T 1uwz_A 101 VIVVLTNLQGQIKEMTVEELLPGAFSSEDL 130 (136)
T ss_dssp CEEEEECSSSCEEEEEHHHHSTTCCCGGGC
T ss_pred cEEEEECCCCCEEEEEHHHhCCCCCCchHh
Confidence 999999988876667899999999988887
No 12
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.24 E-value=4.2 Score=29.84 Aligned_cols=47 Identities=13% Similarity=0.347 Sum_probs=28.4
Q ss_pred cchhhHHHHhccccccccCCCChhhhccccCCccceeeEEEeecCceeee
Q 018917 228 LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMA 277 (349)
Q Consensus 228 ~~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V~~~SDvFv~ 277 (349)
+..+.-|++|||++ +++.+-. -|....++..+|||-......+-|=|
T Consensus 10 ee~l~~L~emFP~l-d~~~I~~--vL~a~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIRS--VLEAQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHHH--HHTTTTTCHHHHHHHHHHSSCCCCSC
T ss_pred HHHHHHHHHHCCCC-CHHHHHH--HHHHcCCCHHHHHHHHHcCcCCCCCC
Confidence 56788999999995 3333211 23344567777777666555554433
No 13
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=20.43 E-value=1.5e+02 Score=23.95 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=26.8
Q ss_pred CCChhHHHHHHHH-hcCCCCCCcchhhhhhcCCCCCCCHHHHHHHHHHcCCCCC
Q 018917 165 GLSPTSMQAIEAA-RGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTN 217 (349)
Q Consensus 165 g~~~~e~~~l~~~-R~~~~~w~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~ 217 (349)
.++++++++|+.. +.. =..|.-=++.+|...+|++||+..+
T Consensus 9 ~Lt~~qi~elk~~F~~~------------D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 9 KLSQRQMQELKEAFTMI------------DQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp TCCHHHHHHHHHHHHHH------------CCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred CCCHHHHHHHHHHHHHH------------CCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 6788887777543 110 0122222899999999999998754
Done!